AlfalfaGEDB | MS.gene67884

M. sativa cultivar XinJiangDaYe / MS.gene67884

KEGG: K02206
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67884.t1	XP_013463082.1	100	294	0	0	1	294	1	294	1.70E-169	605.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67884.t1	P24923	99.3	290	2	0	5	294	2	291	4.6e-168	591.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67884.t1	A0A072V5L7	100.0	294	0	0	1	294	1	294	1.2e-169	605.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene67884	0.823012	1.74E-53	-1.69E-46
MS.gene049341	MS.gene67884	0.806707	7.22E-50	-1.69E-46
MS.gene049580	MS.gene67884	0.80219	6.31E-49	-1.69E-46
MS.gene049825	MS.gene67884	0.828201	1.03E-54	-1.69E-46
MS.gene049873	MS.gene67884	0.817001	4.13E-52	-1.69E-46
MS.gene050277	MS.gene67884	0.90337	3.72E-79	-1.69E-46
MS.gene050303	MS.gene67884	0.829995	3.77E-55	-1.69E-46
MS.gene050719	MS.gene67884	0.808311	3.30E-50	-1.69E-46
MS.gene050721	MS.gene67884	0.814075	1.85E-51	-1.69E-46
MS.gene050807	MS.gene67884	0.80863	2.82E-50	-1.69E-46

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene001968	MS.gene67884	PPI
MS.gene034184	MS.gene67884	PPI
MS.gene42750	MS.gene67884	PPI
MS.gene65301	MS.gene67884	PPI
MS.gene67884	MS.gene040531	PPI
MS.gene67884	MS.gene71482	PPI
MS.gene67884	MS.gene24450	PPI
MS.gene67884	MS.gene013970	PPI
MS.gene67884	MS.gene00474	PPI
MS.gene67884	MS.gene056047	PPI

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67884.t1	MTR_2g032060	100.000	294	0	0	1	294	1	294	0.0	610
MS.gene67884.t1	MTR_4g094430	92.177	294	23	0	1	294	1	294	0.0	572
MS.gene67884.t1	MTR_4g007750	55.195	308	118	5	1	290	1	306	9.27e-119	343
MS.gene67884.t1	MTR_1g075610	52.525	297	132	4	2	290	16	311	1.08e-115	336
MS.gene67884.t1	MTR_8g461270	46.441	295	153	2	1	290	44	338	1.55e-91	275
MS.gene67884.t1	MTR_3g040520	47.020	302	140	5	4	287	25	324	1.81e-85	265
MS.gene67884.t1	MTR_6g080470	47.552	286	147	3	2	287	12	294	2.23e-85	262
MS.gene67884.t1	MTR_8g080190	47.697	304	139	6	1	290	382	679	3.00e-85	270
MS.gene67884.t1	MTR_4g103810	43.046	302	156	5	1	289	105	403	4.27e-85	261
MS.gene67884.t1	MTR_4g103810	43.046	302	156	5	1	289	215	513	7.92e-84	261

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67884.t1	AT3G48750	83.673	294	48	0	1	294	1	294	0.0	520
MS.gene67884.t1	AT2G38620	55.519	308	117	6	1	290	1	306	7.39e-119	343
MS.gene67884.t1	AT1G20930	55.034	298	125	4	1	290	13	309	1.56e-118	343
MS.gene67884.t1	AT3G54180	53.595	306	124	5	1	290	1	304	1.40e-115	335
MS.gene67884.t1	AT1G76540	52.349	298	133	5	1	290	11	307	2.83e-114	332
MS.gene67884.t1	AT2G38620	47.931	290	105	4	1	290	1	244	3.21e-96	284
MS.gene67884.t1	AT1G66750	50.174	287	140	3	1	287	10	293	1.28e-92	278
MS.gene67884.t1	AT1G18040	48.601	286	144	3	2	287	10	292	1.37e-91	277
MS.gene67884.t1	AT2G38620	58.403	238	80	5	1	220	1	237	2.07e-91	272
MS.gene67884.t1	AT2G38620	58.403	238	80	5	1	220	1	237	2.07e-91	272

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Find 68 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACGGCGTCGTTTACA+AGG	0.470308	2.4:+58028070	MS.gene67884:CDS
AAGATTGGTGAAGGAACATA+CGG	0.575038	2.4:+58028056	MS.gene67884:CDS
AAGCAGCGAAATCTCACGAA+TGG	0.622360	2.4:-58028174	None:intergenic
AAGGTGGAGAAGATTGGTGA+AGG	0.638609	2.4:+58028047	MS.gene67884:CDS
AATCGGCGACCTCTATTCCC+TGG	0.474228	2.4:+58031541	MS.gene67884:CDS
AATTACTGCCAGGAGCGCTG+TGG	0.660367	2.4:+58033215	MS.gene67884:CDS
ACTTACCTTAGATGGCCACC+TGG	0.622989	2.4:-58032185	None:intergenic
AGACATTTACTTACCTTAGA+TGG	0.323829	2.4:-58032193	None:intergenic
AGACCAGCTGGCTCAAGATT+TGG	0.324310	2.4:-58032304	None:intergenic
ATCGGCGACCTCTATTCCCT+GGG	0.499404	2.4:+58031542	MS.gene67884:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAATAGGGACAATGAG+AGG	+	chr2.4:58030620-58030639	MS.gene67884:intron	30.0%
AACAATGAATGGGAAACATT+GGG	+	chr2.4:58030999-58031018	MS.gene67884:intron	30.0%
AATACTCTTTGCTTTCTAAC+AGG	+	chr2.4:58032028-58032047	MS.gene67884:intron	30.0%
ACAAGTGTTCAAAAAAGACA+CGG	-	chr2.4:58032890-58032909	None:intergenic	30.0%
ACATATAAAATCTTGGGGAA+AGG	+	chr2.4:58031348-58031367	MS.gene67884:intron	30.0%
AGACATTTACTTACCTTAGA+TGG	-	chr2.4:58032196-58032215	None:intergenic	30.0%
AGAGAAAAAAACTGATAGAG+AGG	-	chr2.4:58033039-58033058	None:intergenic	30.0%
AGATGTTTGAATTTGTGTGT+CGG	+	chr2.4:58028387-58028406	MS.gene67884:intron	30.0%
AGCATATCTTGATAAGGAAA+TGG	-	chr2.4:58029143-58029162	None:intergenic	30.0%
AGGAAAAAAGAGAAAATGGA+TGG	+	chr2.4:58030575-58030594	MS.gene67884:intron	30.0%

Showing 1 to 10 of 359 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	58027944	58033275	58027944	ID=MS.gene67884
chr2.4	mRNA	58027944	58033275	58027944	ID=MS.gene67884.t1;Parent=MS.gene67884
chr2.4	exon	58027944	58027952	58027944	ID=MS.gene67884.t1.exon1;Parent=MS.gene67884.t1
chr2.4	CDS	58027944	58027952	58027944	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58028041	58028225	58028041	ID=MS.gene67884.t1.exon2;Parent=MS.gene67884.t1
chr2.4	CDS	58028041	58028225	58028041	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58029184	58029304	58029184	ID=MS.gene67884.t1.exon3;Parent=MS.gene67884.t1
chr2.4	CDS	58029184	58029304	58029184	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58030106	58030279	58030106	ID=MS.gene67884.t1.exon4;Parent=MS.gene67884.t1
chr2.4	CDS	58030106	58030279	58030106	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58031436	58031599	58031436	ID=MS.gene67884.t1.exon5;Parent=MS.gene67884.t1
chr2.4	CDS	58031436	58031599	58031436	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58032114	58032201	58032114	ID=MS.gene67884.t1.exon6;Parent=MS.gene67884.t1
chr2.4	CDS	58032114	58032201	58032114	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58032286	58032339	58032286	ID=MS.gene67884.t1.exon7;Parent=MS.gene67884.t1
chr2.4	CDS	58032286	58032339	58032286	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1
chr2.4	exon	58033186	58033275	58033186	ID=MS.gene67884.t1.exon8;Parent=MS.gene67884.t1
chr2.4	CDS	58033186	58033275	58033186	ID=cds.MS.gene67884.t1;Parent=MS.gene67884.t1

Gene Sequence

>MS.gene67884

ATGGAGCAAGTAAGTTCAATGCATCAATTTTCAACTTCGATTTCGATTTTCAGTTCAACACGCTTTGATTTTGATTTTGTGAATTTCGATTTTGCAGTACGAAAAGGTGGAGAAGATTGGTGAAGGAACATACGGCGTCGTTTACAAGGCACGTGACCGTGTTACGAATGAAACCATCGCGTTGAAGAAGATTCGACTTGAACAGGAAGATGAAGGTGTTCCTAGCACCGCCATTCGTGAGATTTCGCTGCTTAAAGAAATGCAGCATAGGAACATCGTTAGGTACTTTTATTCTCTTTTTATTTTTTTTAATTTGAAGTTAATTTTCTGCTGTAGATGATTGAAATTATTTGTTTGACATAGTCAATTGGAAGATTAACGATATTTTTTTAATTTTTCTTGCTTTAGTTCATTTTTTTTATGTGAAGTTAATTTTCTGCGGTAGATGTTTGAATTTGTGTGTCGGTGCAGTGAACCGGAAAGTTCTCTATGATTTTAGTGTTATTTTTTTGGTGAATTGGAATTTTAACTTTGATGTCTAGTGTAATGTTGGATCTGCAAGAGTAACGATGATTATCATTTTAGTCATAATGAATGATGATATTGTTCTTCATGACGTCTTCATGATTGTTTCTTATAGTTTTTATGCTTTGTTTTAAGTTTTAGTAACATTCTGTATGTTTTTTTAGGTCTTGCTAATGCTACCGCCATTGTGCATATGTGTGATTAGTATTGTTTTTTTTTTATCATGTATTCATTTTGTCGATGTTTGGTGCCGGCAACCAATCCTTATCTTGTTTGGTGGGGTTGGATGCGTGGGTCAATTGACAACCTGTTTTGATAGTTTGATTCTATTCAGTTAATGTTTGGTAAACTGGTAGTGTTATTGACAAAGGGTTCTAAAGTACTCATTTGATGAGATGATTGTAGGATGCATTATCAAATGTGTGAACAATTTCATTCGTCTTGCTTTTAGCCTTACTAAATTCCTAAATTTTATGTACTATGATTTTATATGTCCCTCTTAGCTGTTATACAAGCTTTCCCTAAGGCATGTTTTTGCTGTGTTATGCAACTTATGCCATAAAGAAAGGATTGAATTACACGAAAAATATTGACTGTTTTTTTCTTTTTCTTTCAATGTATCAGTTTCTTTGAATTATGTTGCTTTGTTAAATCTTATTCTGCCTCTTTAGCCATTTCCTTATCAAGATATGCTTGGTGGTTGTGTGCATGACAGGTTGCAGGATGTAGTGCACAGTGACAAGCGATTGTATCTGGTTTTTGAGTATCTGGACTTAGATCTGAAGAAGCATATGGATTCATCTCCTGAGTTTATAAAAGATCCGCGACAAGTAAAAGTGAGTGACTTATGTGATTTTCTTATCTCTTCCTCTCTGTTATTTTAAGATCACACGTGTTTTTGTAAGTCAATTATTGTTGAAAGAGTGTGCAAAAAATCTGGTTTGGCAATAAATATTATGGTTTTCTTATCTTGTCCTTCCACAAATCTAATTTAGACAATGATAGTGATTGATGAATGATGATAAACTTATGCTTGGCAACAAATAGTTTGGCTTGCCAAATTGCAGGTATATACAAATGATGCATGTCTCGTGAGTTTCTTGACGAATTGCAGAGTTTAGTGGGTTACAGTTAATTGGTTATTACGATGTTGCCTGATAATTTTCCTGTTTCTGGATCTAAATGATGATTCGATTAAGTTTGACCTATAGCATTTTGATTGGAGCTGTCCTCTATTTATATAGCAAGTTGTTCAAATACTATTTCACGCAGTCAATAAAAAAAAAGCTCCATTGTGTTTGTTCAAGTCGACGTAGGATGGCTATATATATACTGTACTCAGATGCAGCCATTGCTTTGCTTATTTCTTTGGTTATGGTTTCCCTTCATATCGCCTGCTCAACTGCCACGTCATTAATGTTAATAAAGTTCTATCCATGTGTATTTAGTTATGTATGCACTTTTACCTACCACTCCTTTCCTTTGCTTCCCTTCCCATTGTTTGTATGCTAAATTATGGTTTAAGAATTTCCTTTAATATTCATAATTAATATAAAATATCATTAAAAATAGAGCTGCTTATTTTGTGAACTTGACCAGTTAGTTTGGAGTCTGAATTCTTTAATTATCCTTTGCAGATGTTCCTTTATCAAATGCTCTGTGGAATTGCTTACTGTCATTCACACAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACTAATTCACTTAAGCTTGCCGATTTTGGATTGGCCAGGGCATTTGGTATTCCTGTCAGAACATTTACACATGAGGTTTGTGTGCTACCTTATATTTGCTTCTAGTCGCTCATTCACGTAACACCAAACTTACGAAAGGAGTATAGACATAAATTAAATATTTAATCCTCCTCTTGCTCTAATTAGAGAGGAGTCAGGTGACTAAAGTAGTGTCGCTGCATGAACTGAGAGAACAGTGTATAAGAGAATAAAATAACAGAGGTAAAAGACGACACATGGAAACAAGAAGGCAGAATAAGAACAAAAAGAAAAAAGAATCACAAATTATGGAAGACATAATTAGTGTACAGAAAGGGATGAGGTCAGAAAAAGGAAAAAAGAGAAAATGGATGGAAAATAATAGAAAATGAAACAGAAATAAATAGGGACAATGAGAGGTGATAATAGAGAGAATGGAGGTCGCCAGAGATGGGATGTTGCCACTGCTGGAGATGGATGAGGAACGACCTGAATGGAAATGGGAGTAACCAAATGAGTTACGGAGGCCGAGTCCTCTGTGCTTCTGGGTTTCAAACTCTCGTGTCATGGGTCAATACCATCAATTGAATCCAGCTCTCTTTCTCTTTCTGTTCCCCCCCTCCCTTGGTTTCTCAACCATTTCCCTGAGTTGTGCCTTGGGTACCATGAGAATGGTGGCTTCCATGACCTCCACATGAAAACCACCATGCCACAGCATAGCCTTTGTTTTGGGTTTGTCAGATTTCCGCCATTCCATTCTTCCATGGTTGTCATTTAACAATGAATGGGAAACATTGGGAATGCTGAATGATCGTTGGTCACTTTCATATCATGCACCATGTATCATTGCCCATCATTATATAATCTGGCATTGAAGATTGGCTTAACTATAACTAGTTAGATCAAGCTGCGTTAACCAAATGACTTGAGTTTATTTCCTAGTAGTGATCCTTCATTGCTAGGGTCATCTGTATGTGCTACTGTAACCCCTCACTAATTCTTGTATCTAGCCTCAACCTTTGCACGGGAAAACCTCCCCTGCCCCAAACTTTAGTAACCTAGAGAACATATGTATTTATCATTTTGTATTGAAACAATTAAATAAACTAAGAGCAGATTAGGTGTACATATAAAATCTTGGGGAAAGGTGTTATTGAAGATGGCAAACATTTTTATGTAATACTGATTTATCGTCATTGATGATTGTTTGTAGGTAGTTACACTGTGGTACCGAGCTCCGGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGCAAATCGGCGACCTCTATTCCCTGGGGATTCCGAGATTGATGAGTTATTTAAAATATTCAGGTGAATATCTTTATTTCCGTAGGACTTGAACTTCTTGGTAAATCGCTTAATTATCTATCAGCTGAGAAAGCATCTTTTGACTTTAATATTTACAAGGGATTGAACTGTAGAATCTGAATTCTATTTGATAATGAACTTGTTATTCTTATTTATAAGTGGAATCTGAATTCCATGTTGATACCATTTGATGGACATGATCCTTTGAATGCTAGTTTCACAACTAATTGAATTTTGAGATGGCATTTCCTTCTTTTTGCTATTTCCCCTGCTTTAGTTTAGCCTTTCTCTTACTGACTGAAATGGATAGCAAAGGAGTTCTTAATGGGGATTTTTTAATTTAACAATTTCTGTAGCATGCCATGAATTTAGATTTTCCAGTTGACATATAAAATTTGTTAAATATATTTGAAAAACGGTACCATAGGAAAAATACTCTTTGCTTTCTAACAGGGATGTATCTAACAGATAATCAAATCTGCATATAATATATTTACGCGTTGTTCTTTTTATGAAGAATCTTGGGTACACCAAATGAAGATACATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAGGTGGCCATCTAAGGTAAGTAAATGTCTGTCTGTCCTTAATCTGAATTGATGTGATCCTTATTACTCTAATATTTTAACCTTATCTTGAACTTTGCAGGACCTCGCAACCGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTAATGTAAGTGCAACGTGTGATGAAATATTATTTTTCTTTGGCATTATTAAAAATTAGTGCAATAAGTTTATACCTCGATTGTTGCCGGCTTCAATATCTTAGGCTGGGCCTCAGTCTGAATCCTTGTTATTGGGATAAACAAACAATAGTTTATTTTGTTCTTAATTAGGAGGCAGTACTTTCTGTTCTGTTGTAAAATTAACAAAACCAGAGAAATATATTTAGAAGCAAAAATATATTGATAAATATTGGATGGTAGTCATCCTTACTGATCATAGCTTAGAAAACATGGTACTTTTTTTTTTTGAAGGAAGAAAACATGGTACTTCATTAGCTTAAAAATATCATTTATTTGATAATTAAGGACACAGTTTCTTAATAGAAATAACAAGGGCAATGCTTGAGATTTCCAGCCATTAAATTTTCTTTCTTTTTTTGGTGATTGACGTGGCAATTTTTATTTATATCTTCATTCGCAAAAAACACTTCAGTGTTGAGACGTTTCAATGCAAAAGCAATTAAAGGGCGATGCTAGTACAATCCTCAATTGCCGTGTCTTTTTTGAACACTTGTTTGTTCCCTCTTCTGCATCTCAAGCTGGTTTACGCATCCTCTGTATGGTGGGATAATTAGATATCAAATTCATTCTTCTATTCCAGTTATCAAATAATGAAATAGAGCCCATGTATTAATTTTAATCCTCTCTATCAGTTTTTTTCTCTTCTCAATTTGCATGAATTATTTGCATTTTAGAATTTATATACTGAAGTATTTTTTAACACGTCTGCAATTTCCATTAAATTTCTTTGGTGCTGACTGTATTGTATATGTATATCTTTTGTATTCCAGAGCATGCTTTGCTTGGATCCCACCAAAAGAATTACTGCCAGGAGCGCTGTGGAGCATGAATATTTCAAAGACATTAAGTTTGTACCCTAA

Protein sequence

>MS.gene67884.t1

MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSSPEFIKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP