AlfalfaGEDB | MS.gene041271

M. sativa cultivar XinJiangDaYe / MS.gene041271

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041271.t1	KEH22098.1	88.4	640	54	3	1	621	16	654	0.00E+00	1089.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041271.t1	Q9FNE1	52.0	619	262	8	17	606	37	649	4.3e-171	602.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041271.t1	A0A072TZ02	88.4	640	54	3	1	621	16	654	0.0e+00	1089.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene041271	MS.gene62577	PPI
MS.gene041271	MS.gene74963	PPI
MS.gene041271	MS.gene76218	PPI
MS.gene041271	MS.gene060422	PPI
MS.gene041271	MS.gene000889	PPI
MS.gene041271	MS.gene029315	PPI
MS.gene041271	MS.gene040288	PPI
MS.gene041271	MS.gene065046	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041271.t1	MTR_7g033135	92.188	640	30	3	1	621	16	654	0.0	1152
MS.gene041271.t1	MTR_4g105540	42.901	655	325	11	1	611	12	661	1.58e-175	514
MS.gene041271.t1	MTR_5g033690	42.254	639	310	12	4	597	22	646	7.12e-167	491
MS.gene041271.t1	MTR_3g064080	36.573	607	341	12	3	570	16	617	7.07e-118	365
MS.gene041271.t1	MTR_3g064110	37.925	559	293	12	63	574	86	637	8.35e-113	352
MS.gene041271.t1	MTR_3g064090	38.980	549	297	11	61	574	79	624	4.30e-112	350
MS.gene041271.t1	MTR_1g104890	34.336	565	318	11	64	585	91	645	2.37e-101	323
MS.gene041271.t1	MTR_8g041910	34.244	549	311	9	65	565	91	637	1.27e-98	315
MS.gene041271.t1	MTR_8g041660	35.026	571	321	11	58	583	75	640	1.91e-97	312
MS.gene041271.t1	MTR_1g105655	35.935	551	294	12	67	566	89	631	8.57e-96	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041271.t1	AT5G40380	53.255	599	248	6	4	576	24	616	0.0	632
MS.gene041271.t1	AT5G40380	54.297	512	209	4	4	496	24	529	0.0	556
MS.gene041271.t1	AT1G70530	46.330	613	290	12	6	583	16	624	0.0	548
MS.gene041271.t1	AT5G40380	55.385	455	196	3	4	457	24	472	1.47e-179	517
MS.gene041271.t1	AT1G70520	43.573	599	296	10	11	572	30	623	1.36e-163	483
MS.gene041271.t1	AT1G70530	46.857	525	242	10	6	496	16	537	4.25e-160	470
MS.gene041271.t1	AT1G70530	47.650	468	226	9	6	457	16	480	5.46e-145	429
MS.gene041271.t1	AT4G28670	39.535	559	273	10	65	570	79	625	3.43e-128	391
MS.gene041271.t1	AT4G21410	34.708	582	303	14	66	576	83	658	6.13e-96	309
MS.gene041271.t1	AT4G23320	35.861	488	263	9	109	566	4	471	1.53e-95	303

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Find 107 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTACCTTCACTATT+TGG	0.196588	7.2:-66658514	None:intergenic
AAAATAGGGCAAGGAGGATC+AGG	0.447436	7.2:+66659496	MS.gene041271:CDS
AAAGCCGATGTCTATAGTTT+TGG	0.313265	7.2:+66660487	MS.gene041271:CDS
AAATTCTAAATTGGAAGCAG+AGG	0.556995	7.2:+66660041	MS.gene041271:CDS
AAATTGATCTAAACTCTTGT+TGG	0.408048	7.2:-66659713	None:intergenic
AACTATAATTATCGTAACGA+AGG	0.606689	7.2:-66658237	None:intergenic
AAGGAATAATGTCATCAGAG+AGG	0.718762	7.2:+66660540	MS.gene041271:CDS
AAGGATGCTGGTGGTGATGG+TGG	0.464349	7.2:+66658370	MS.gene041271:CDS
AATGAAAGAGGTGGAAAAGA+TGG	0.504380	7.2:+66658580	MS.gene041271:CDS
AATGAAGTAGATTTGATCAG+TGG	0.556797	7.2:+66659610	MS.gene041271:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCAGAGCTCAAAAA+TGG	-	chr7.2:66661201-66661220	None:intergenic	30.0%
AAATTCTAAATTGGAAGCAG+AGG	+	chr7.2:66660041-66660060	MS.gene041271:CDS	30.0%
AATATGTTAGCAGATAGAGA+TGG	+	chr7.2:66659948-66659967	MS.gene041271:intron	30.0%
AATGAAGTAGATTTGATCAG+TGG	+	chr7.2:66659610-66659629	MS.gene041271:CDS	30.0%
ACTACCCAAAATCAAGTAAA+AGG	-	chr7.2:66658926-66658945	None:intergenic	30.0%
ATACATGAAAATCCCAAGAT+AGG	-	chr7.2:66658990-66659009	None:intergenic	30.0%
CAAATTACTTTATCCCTCAA+AGG	-	chr7.2:66658283-66658302	None:intergenic	30.0%
CAAGCAATGACATCAATAAA+AGG	-	chr7.2:66659152-66659171	None:intergenic	30.0%
CCATTTCTTTGATGAAACTT+GGG	-	chr7.2:66658015-66658034	None:intergenic	30.0%
CTTTCTTGATTCTGATATGT+TGG	+	chr7.2:66658626-66658645	MS.gene041271:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	66657914	66661374	66657914	ID=MS.gene041271
chr7.2	mRNA	66657914	66661374	66657914	ID=MS.gene041271.t1;Parent=MS.gene041271
chr7.2	exon	66657914	66658610	66657914	ID=MS.gene041271.t1.exon1;Parent=MS.gene041271.t1
chr7.2	CDS	66657914	66658610	66657914	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1
chr7.2	exon	66659188	66659298	66659188	ID=MS.gene041271.t1.exon2;Parent=MS.gene041271.t1
chr7.2	CDS	66659188	66659298	66659188	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1
chr7.2	exon	66659392	66659742	66659392	ID=MS.gene041271.t1.exon3;Parent=MS.gene041271.t1
chr7.2	CDS	66659392	66659742	66659392	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1
chr7.2	exon	66660026	66660238	66660026	ID=MS.gene041271.t1.exon4;Parent=MS.gene041271.t1
chr7.2	CDS	66660026	66660238	66660026	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1
chr7.2	exon	66660473	66660585	66660473	ID=MS.gene041271.t1.exon5;Parent=MS.gene041271.t1
chr7.2	CDS	66660473	66660585	66660473	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1
chr7.2	exon	66660994	66661374	66660994	ID=MS.gene041271.t1.exon6;Parent=MS.gene041271.t1
chr7.2	CDS	66660994	66661374	66660994	ID=cds.MS.gene041271.t1;Parent=MS.gene041271.t1

Gene Sequence

>MS.gene041271

ATGTCATGTTTATTTTCTCACACAGTTTCAGACCCAAGAATCTCAGAAGCTGGACTCTACTGTGGTAAAGACAAAGCACCACAAAAATCAAACTTCATCCCAAGTTTCATCAAAGAAATGGAGAATCTCTCACAGCTTGTAACTGATCACAATTGGGGAATTCAATCAGTAAATATCTCAGGATCTGTTACAATCTATGGCTTTGCACAATGTTTTCAAGATCTCTCGCATACTGATTGTCTTCTTTGCTATGCTGCAAGTCGAACTAAGCTCCCTCGCTGCCTCCCTTCGCTATCAGCTCGCATATATCTTGATGGTTGCTTCCTTCGTTACGATAATTATAGTTTCTACTCAGAGGAAACTGATCCTTTGAGGGATAAAGTAATTTGCACTTCTTCTGAGAGGTTGGAGGTGCAGATGGAAAGGAGTGTTGAAAGAGTGGTTGATGTTGTGGCCAAGGATGCTGGTGGTGATGGTGGTGGATTTGCTGTTGGAGAAGTTGAGGGTGTTTATGCCTTAGCACAATGCTGGAAAACTCTTGGGATTGATGGGTGTAGAGATTGTTTGAGCAATGCTGTGAAGAAGGTTAGAGGGTGTTTGCCAAATAGTGAAGGTAGGGTTTTGAATGCTGGATGTTATTTGAGATACTCAACACACAAATTTTTCAATGAAAGAGGTGGAAAAGATGGTGGAAATGGTGAGAAACTGTGTTCTTTCTTGATTCTGATATGTTGGTTGTTTTTGAGTAGAACTGATTCTGCCTCAAAAAATGATTCTATCTGAAGCTATGATTTGTAATTTTTCATTCTATAACTTTTACCTTAATATATCCAAACATAAATCAATTTTCTTCGGTGATAATTCAATTTTACAGAATCAATTCACTTAAAATCAATTTTTGTCATACAGAACCAAACATACACAATGAACCTGAAAAACTAATATTTGCTTATAATTGTGACCAGAGCGAGTATATAGGATCACGGAGTAGCTGCTGCAGCAACTTAAACCTTTTACTTGATTTTGGGTAGTTTGTAGTGAGTTAAAATGACAATTGGAATTGAAATTTGAAACCTATCTTGGGATTTTCATGTATTTTGTTTTGATGTTATTGTTTCAAATTTGTTCCTCTTTTAGAAGCAAGATTCTTTCATACTTTTATATTTTCCTAAATAGATCCTGTGATCTCATCTAACACATGCCATTGAGTGAGAAAGTACAATACTTTGTCTTTTCCTTTTATTGATGTCATTGCTTGTGTTTCATTATTTCAGCATCTTTAAGAGGAGTTGTAATAGCAGCAGTGTTAGCAATAGCTGCAATTATTATGCTTGCTCTCTCAGCCTCTTTTGCAGTCTATAAAAAATTGTCAAATCTGAAAAAAGGTTAACATTTCATATTGAAAATGAAATTATTCACACACTATAAATTGTTTGTATGTTAACTTTCTTTCGTTGTTTTTCTTTTTCTTTATTCAGAAAAAAATAACCGGGATCAAATTTCATCGTCCATAACAAAATCTAGTTTGAATTACAAATACGAAACGCTTGAGAAGGCAACAGATTATTTCAACTCTTCAAGAAAAATAGGGCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTCCCTAACGGAAACGTTGTTGCAGTGAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAGATTTGATCAGTGGAATTGAACACAAAAATCTTGTCAAACTATTAGGTTGTAGCATTGAAGGACCCGAGAGCCTACTTGTATATGAGTACTTACCCAACAAGAGTTTAGATCAATTTATCTTTGGTAAGTCCTCTTACATCTCTTTATCTTAACACATACATTACATAGGTTCTAAAACATGTATCATCACAAGTGTTTATGTAAGTAGTAGCGATGACACTCGAGTACTAACAATACGTTTTAGGTGGGAAGAAAAATTATATAGAGATGATACATGTTTGTCGGAACATTTTGTTATTAATGGTAACTAGATAGATACCGACAGGTCAATATGTTAGCAGATAGAGATGGTTAGATAGATAAAGTTTGGGGATTGTGGAAAATAAATCTTTGTTTTCGTTTTCAGAAAAGAGCAGAACTCAAATTCTAAATTGGAAGCAGAGGTTTAACATCATTCGTGGAACAGCCGAAGGGCTTGCATATCTTCATCAAGGTTCTATTAAAAGAATCATCCATAGAGATATCAAAAGCAGTAATGTTCTTCTCGATGATAATCTCTCTCCTAAGATTGCAGATTTCGGCCTTGCGCGTTGTTTTGCTACTGATAAAACACATTTGAGTACTGGAATTGCTGGAACACTCTAAGTCCTTGGCTTTAGGTAGATCATATGATATTTCTAGTAGAACACTTTGTGTGAAAAAGCATTCATTGCATTTATAAAACCATATTAAACAAATGTCTTAGGTGTTACTTGATGCCAGTACAGTGTAATATATTATTCAAAGTCGTATTAACAGTCGCATTTCAATACTTGGAGCAGTGGTTACATGGCTCCGGAGTACCTAATTCGAGGACAGCTTACAGATAAAGCCGATGTCTATAGTTTTGGAGTACTTGTTCTGGAGATTGTATGTGGCAGAAGGAATAATGTCATCAGAGAGGACTCTGGATCACTTCTACAAACTGTAAGACTTTAAAACATGAAACTATACTGATTGGTTAATAATTATCCTTATAAAATTGAAAATATACTGATTTTTTCACCAAAACTTTCACTTTTTAGTCCAAATATATCTTATGGAATCAAAGCTTTATGCTTGTTATTCTCTTCGTTCCACAATATAAGTAACATTAGAAAATAAAATTGTCGATTATATAAGTCGTCTTACACTCTCATCAGAGAAGTATTAAATTTGTATTCCGATTAAATACCTTTCTACTCATCACGCTCATTATCCAATTCTTGAAATCTCTCTTTCCCATACCATTGTTTAAGGATATATTAACTACATTTCTTAATATGTTTGTCATTTGCTCTAGTAACGTATATTAGAGGACCGAGAGAGCACTAAAAATTGTCTTTTTGGCACCAGGTTTGGAAACATTATCGTTCAAAGACATTAGTTGAGACTATCGATTCTAGCGTGGGAGATGATATTCCTGAAGTTGAGGCATCCAGGGTGCTACAAATTGGTTTGCTTTGCACACAAGCTTCTGCTTCCCTTAGACCATCCATGACTCAAGTTGTTAAAATGTTAAGTAATTCAGATTTAGATGTTCCTACACCAAATCAGCCACCATTTTTGAGCTCTGCAATTTTAGACTCAGAAAGTTCCATTAGATCTTATAGTACAAACAGCTTTGTATCCAATGCTTTAAAAACGATTGGAGTTTCACACAGCTATTCAGAGTCCACTTGTTCTCGCAACTCAGACGAGCCATCAAGAAGTGAAGAACCAACTTTCCAAGCTTGA

Protein sequence

>MS.gene041271.t1

MSCLFSHTVSDPRISEAGLYCGKDKAPQKSNFIPSFIKEMENLSQLVTDHNWGIQSVNISGSVTIYGFAQCFQDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEETDPLRDKVICTSSERLEVQMERSVERVVDVVAKDAGGDGGGFAVGEVEGVYALAQCWKTLGIDGCRDCLSNAVKKVRGCLPNSEGRVLNAGCYLRYSTHKFFNERGGKDGGNASLRGVVIAAVLAIAAIIMLALSASFAVYKKLSNLKKEKNNRDQISSSITKSSLNYKYETLEKATDYFNSSRKIGQGGSGSVFKGILPNGNVVAVKRLVFNNRQWVDEFFNEVDLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKSRTQILNWKQRFNIIRGTAEGLAYLHQGSIKRIIHRDIKSSNVLLDDNLSPKIADFGLARCFATDKTHLRQLTDKADVYSFGVLVLEIVCGRRNNVIREDSGSLLQTVWKHYRSKTLVETIDSSVGDDIPEVEASRVLQIGLLCTQASASLRPSMTQVVKMLSNSDLDVPTPNQPPFLSSAILDSESSIRSYSTNSFVSNALKTIGVSHSYSESTCSRNSDEPSRSEEPTFQA