AlfalfaGEDB | MS.gene60623

M. sativa cultivar XinJiangDaYe / MS.gene60623

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60623.t1	XP_024642260.1	96.4	883	27	2	1	882	1	879	0.00E+00	1694.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60623.t1	Q9FLX6	48.1	875	446	6	10	879	15	886	3.7e-245	849.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60623.t1	A0A396K048	96.4	883	27	2	1	882	1	879	0.0e+00	1694.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene60623	0.803156	3.99E-49	-1.69E-46
MS.gene049825	MS.gene60623	0.809829	1.56E-50	-1.69E-46
MS.gene050303	MS.gene60623	0.827432	1.57E-54	-1.69E-46
MS.gene053294	MS.gene60623	0.801318	9.53E-49	-1.69E-46
MS.gene055808	MS.gene60623	0.830779	2.42E-55	-1.69E-46
MS.gene056091	MS.gene60623	0.842026	3.32E-58	-1.69E-46
MS.gene05953	MS.gene60623	0.805429	1.34E-49	-1.69E-46
MS.gene05954	MS.gene60623	0.831187	1.92E-55	-1.69E-46
MS.gene060429	MS.gene60623	0.804728	1.88E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000711	MS.gene60623	PPI
MS.gene003001	MS.gene60623	PPI
MS.gene003372	MS.gene60623	PPI
MS.gene00391	MS.gene60623	PPI
MS.gene007454	MS.gene60623	PPI
MS.gene007491	MS.gene60623	PPI
MS.gene00776	MS.gene60623	PPI
MS.gene015659	MS.gene60623	PPI
MS.gene020514	MS.gene60623	PPI
MS.gene020668	MS.gene60623	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60623.t1	MTR_1g099590	96.364	880	27	2	1	879	1	876	0.0	1758
MS.gene60623.t1	MTR_6g032915	32.905	857	550	9	25	861	188	1039	1.50e-173	533
MS.gene60623.t1	MTR_6g032915	29.604	733	501	11	30	755	93	817	1.22e-95	325
MS.gene60623.t1	MTR_6g032915	25.467	589	428	7	109	692	71	653	4.86e-56	210
MS.gene60623.t1	MTR_1g111020	33.956	857	545	10	40	878	3	856	2.45e-167	509
MS.gene60623.t1	MTR_1g111020	28.025	653	441	11	11	642	64	708	1.49e-70	250
MS.gene60623.t1	MTR_2g086150	34.138	829	515	13	72	878	44	863	1.47e-156	481
MS.gene60623.t1	MTR_2g086150	29.819	607	384	12	14	599	88	673	4.59e-76	266
MS.gene60623.t1	MTR_1g111020	33.096	843	543	10	40	864	3	842	2.12e-155	482
MS.gene60623.t1	MTR_1g111020	28.025	653	441	11	11	642	64	708	4.41e-70	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60623.t1	AT5G52850	48.800	875	440	6	10	879	15	886	0.0	879
MS.gene60623.t1	AT4G13650	33.220	879	566	8	21	881	188	1063	1.56e-174	534
MS.gene60623.t1	AT4G13650	28.488	681	473	8	33	707	100	772	1.69e-82	287
MS.gene60623.t1	AT4G13650	26.667	375	231	10	400	737	67	434	3.55e-22	103
MS.gene60623.t1	AT3G49170	33.333	810	504	13	103	881	45	849	1.20e-148	460
MS.gene60623.t1	AT3G49170	29.958	474	312	11	30	491	178	643	3.21e-48	185
MS.gene60623.t1	AT3G49170	27.237	257	173	5	46	295	401	650	3.82e-22	103
MS.gene60623.t1	AT3G49170	27.647	170	117	3	30	196	486	652	1.24e-12	72.4
MS.gene60623.t1	AT2G27610	33.293	829	527	12	69	878	43	864	3.76e-148	459
MS.gene60623.t1	AT2G27610	29.875	559	376	8	37	588	112	661	1.45e-74	262

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Find 175 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATCTTCATTCTCT+TGG	0.378462	1.2:+69668059	None:intergenic
AAATATATTGCAGGATCAGA+TGG	0.511675	1.2:+69668304	None:intergenic
AACAAAAGTAGACATAGATA+TGG	0.452573	1.2:-69669118	MS.gene60623:CDS
AACAATGGTGTCTTCTTTGG+TGG	0.480088	1.2:-69669901	MS.gene60623:CDS
AACGCTGGACTCTCTGATTT+TGG	0.182191	1.2:-69668259	MS.gene60623:CDS
AACTCAAACTCTCTCAAACA+AGG	0.606462	1.2:-69670386	MS.gene60623:CDS
AAGAATGGCAGACATTGTAA+AGG	0.574399	1.2:+69669203	None:intergenic
AAGGCATTTCATCGAACAAG+TGG	0.641314	1.2:+69670255	None:intergenic
AAGTCCTGGGCAGTGCTGGA+TGG	0.560024	1.2:-69668194	MS.gene60623:CDS
AATACGTAAAATTATTTGGT+AGG	0.484172	1.2:+69669517	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATATTGCAGGATCAGA+TGG	+	chr1.2:69670019-69670038	None:intergenic	30.0%
CAGTTGTTTGATATGATGAT+AGG	-	chr1.2:69668159-69668178	MS.gene60623:CDS	30.0%
CATAAGTACACATCATATTC+AGG	+	chr1.2:69668699-69668718	None:intergenic	30.0%
CATGCACATTTAATCATGTT+TGG	-	chr1.2:69668579-69668598	MS.gene60623:CDS	30.0%
CTAGACAATGTAAACTCATT+CGG	+	chr1.2:69668198-69668217	None:intergenic	30.0%
CTGAATATGATGTGTACTTA+TGG	-	chr1.2:69668697-69668716	MS.gene60623:CDS	30.0%
CTTGAGGATGATCTTTATAT+AGG	-	chr1.2:69668906-69668925	MS.gene60623:CDS	30.0%
TAACTGAATTTAGGAATAGG+CGG	-	chr1.2:69670230-69670249	MS.gene60623:CDS	30.0%
TAAGATGGATGAATTTAGCT+TGG	-	chr1.2:69669409-69669428	MS.gene60623:CDS	30.0%
TCTTTATATAGGAAATGCAC+TGG	-	chr1.2:69668917-69668936	MS.gene60623:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	69667847	69670495	69667847	ID=MS.gene60623
chr1.2	mRNA	69667847	69670495	69667847	ID=MS.gene60623.t1;Parent=MS.gene60623
chr1.2	exon	69667847	69670495	69667847	ID=MS.gene60623.t1.exon1;Parent=MS.gene60623.t1
chr1.2	CDS	69667847	69670495	69667847	ID=cds.MS.gene60623.t1;Parent=MS.gene60623.t1

Gene Sequence

>MS.gene60623

ATGCAAATGCTATGTAGCAAAACTGCTACTCACACTTTTTCACTGTCCCGCTTCCAAGAAACTTGTTCACGTGTTCTTTCATTCTGCAACTCAAACTCTCTCAAACAAGGAATATGCATTCACAGCCCCATAATCAAACTTGGTCTTCAACATGACTTATATTTAACCAACAATTTACTCTCTTTATATGCTAAAACCTTTGGAGTTTATCGAGCACGCCACTTGTTCGATGAAATGCCTTACAGAGACGTCGTATCATGGACAACGATTCTGTCTTCACACACCAAGTCCAAGCATCATTCTGATGCCCTGCAGTTGTTTGATATGATGATAGGTTCTGGTGAGTATCCGAATGAGTTTACATTGTCTAGTGCTTTAAGGTCGTGTTTTGCTTTAGGGGAGTTTGAATGTGGGACGCAGATTCATGGTTCTGCTGTGAAGCTTGGGTTAGAGATGAATCGTTTCGTTGGAACTTCTTTGGTTGAATTTTATACAAAGTGTGGTTGTTGTAGTGTTGAAGCGTGGAAATTGCTTTCTTTGGTGAAGGATGGTGGTGATGTTGTGTCTTGGACAACAATGGTGTCTTCTTTGGTGGAAAATGGTAAATGGGGTGAAGCTTTTGAAATTTATGTCAAAATGATTGAATCGGGTGTTTATCCGAATGAGTTCACGTTTGTTAAACTATTAGGTGCAGTGTCTTCTTTTCTTGGTTTGGATTATGGGAAACTGCTGCATGCACATTTAATCATGTTTGGTGTTGAAATGAATTTGGTGTTGAAGACGGCTGTCATTGATATGTATTCAAAATGCAGACGGATGGACGATGCTATTAAGGTTTCTAATCTGACACCTGAATATGATGTGTACTTATGGACCACCCTTATCTCTGGATTTACTCAAAATTTGCAGGTTAGAGAGGCTATCAGTGTTTTTCGTGATATGGAATTATCTGGCATCCTACCAAATAATTTTACGTATTCTAGTTTATTGAATGCTAGCTCCTCAATTTTATCATTGGACTTAGGGGAACAATTTCATTCGCGGGTTATCACTGTTGGACTTGAGGATGATCTTTATATAGGAAATGCACTGGTTGATATGTACATGAAATGCTCCCACATCACTACAAATGCTGTGAAAGTTTTTAGAGAGATAACATCACCAAATGTCATGTGTTGGACTTCTTTGATTGCTGGTTTTGCAGAAAAAAGATTAGAAGATTCTTTTCAGTTGTTTGCTGAGATGCAAGCAGCAGGAGTAAAACCGAATTCCTTTACAATGTCTGCCATTCTTGGAGCTTGCAGCAAAACGAAGTCTCTTGTTCCAACAATGATGCTCCATGGACATATCATAAAAACAAAAGTAGACATAGATATGGCTGTTGGGAATGCTCTTGTAGATACTTATGCTGGAGTGGGGATGACTGACGAGGCATGGTCTGTAATTGGTACAATGAATCTTAGAGATTCCATCACGTACACATGTTTAGCCGCAAGGCTAAACCAGAAGGGGCATCATGGAATGGCATTAAAAGTTTTGATTCACATGTGCAATGATGGGATTAAGATGGATGAATTTAGCTTGGCAAGTTTCTTATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCAGCTGCATTGTTATTCTGTCAAATCAGGCTTCCAGAGTCACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTATTCACGATGCAAATAGAGCTTTTAAAGATATTAGTGAGCCAGATGCATTTTCATGGAACGGTTTGATATCTGGATTTTCTTGGAATGGTTTGATATCCCATGCTCTTTCTACTTTTGATGACATGAGGTTAGCAGGAGTTAAACCTGATTCTATAACACTGTTGTCGCTGATTTCTGCTTGCAGCCATGGCGGCTTATTAGAACTGGGTCTTGAGTATTTCCATTCTATGCAAAAAGAATACCATATAACCCCAAAACTAGATCACTACGTGTGTTTAGTTGATCTCCTTGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAAAAATGCCTTTCAAGCCAGACTCTTTGATCTGTAAAACTTTATTAAATGCTTGCAATTTACATGGAAATGTTGCTCTAGGAGAAGATATGGCAAGGCGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGTTGCTTGCAAACTTATATGACAACGCTGGACTCTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGATAAGAAGCAGAGTTCATCACTTCTCCGCAGGAGAGAAGATCAATGAAGACGAGATTACTGAAAAGCTGGAGTTTCTTATAACTGAATTTAGGAATAGGCGGTATCAATACCAAGAGAATGAAGATAAGTTTTACCACCCAGAGCAATTGGCAGTTGCATTTGGTGTTCTTAATGCACCATCTACGGCTCCAATACGTATATACAAGAATTCACTGATCTGCTCTCACTGCCATACTTTTATAATGCTTTCCACACAAGTGATTGGTAGGGAGATAATTGTGAGGGATAGGAAACGGTTCCATTTCTTTAAGGACGGACAATGTTCTTGCAGAGGTCACTTGTGA

Protein sequence

>MS.gene60623.t1

MQMLCSKTATHTFSLSRFQETCSRVLSFCNSNSLKQGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVYRARHLFDEMPYRDVVSWTTILSSHTKSKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFECGTQIHGSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMVSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLDYGKLLHAHLIMFGVEMNLVLKTAVIDMYSKCRRMDDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGILPNNFTYSSLLNASSSILSLDLGEQFHSRVITVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLEDSFQLFAEMQAAGVKPNSFTMSAILGACSKTKSLVPTMMLHGHIIKTKVDIDMAVGNALVDTYAGVGMTDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQSHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYVCLVDLLGRGGRLEEAMGVIEKMPFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEKINEDEITEKLEFLITEFRNRRYQYQENEDKFYHPEQLAVAFGVLNAPSTAPIRIYKNSLICSHCHTFIMLSTQVIGREIIVRDRKRFHFFKDGQCSCRGHL