Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041454.t1 | XP_013458178.1 | 95 | 238 | 12 | 0 | 1 | 238 | 1 | 238 | 2.20E-127 | 464.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041454.t1 | Q9ZT66 | 39.2 | 227 | 123 | 5 | 2 | 218 | 25 | 246 | 4.9e-35 | 149.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041454.t1 | A0A072UQU5 | 95.0 | 238 | 12 | 0 | 1 | 238 | 1 | 238 | 1.6e-127 | 464.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061318 | MS.gene041454 | PPI |
| MS.gene66599 | MS.gene041454 | PPI |
| MS.gene041454 | MS.gene61602 | PPI |
| MS.gene070774 | MS.gene041454 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041454.t1 | MTR_4g117380 | 94.958 | 238 | 12 | 0 | 1 | 238 | 1 | 238 | 1.76e-159 | 441 |
| MS.gene041454.t1 | MTR_4g117400 | 66.109 | 239 | 80 | 1 | 1 | 238 | 55 | 293 | 1.81e-120 | 345 |
| MS.gene041454.t1 | MTR_4g117450 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 3.78e-117 | 334 |
| MS.gene041454.t1 | MTR_4g117450 | 61.600 | 250 | 84 | 2 | 1 | 238 | 1 | 250 | 7.20e-114 | 326 |
| MS.gene041454.t1 | MTR_4g117390 | 63.180 | 239 | 77 | 2 | 1 | 238 | 1 | 229 | 1.89e-108 | 312 |
| MS.gene041454.t1 | MTR_4g117450 | 67.403 | 181 | 58 | 1 | 59 | 238 | 2 | 182 | 3.25e-90 | 264 |
| MS.gene041454.t1 | MTR_2g021340 | 53.942 | 241 | 108 | 3 | 1 | 238 | 1 | 241 | 1.57e-85 | 254 |
| MS.gene041454.t1 | MTR_2g021340 | 55.157 | 223 | 98 | 2 | 18 | 238 | 22 | 244 | 1.05e-80 | 242 |
| MS.gene041454.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 115 | 318 | 3.77e-15 | 73.6 |
| MS.gene041454.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 129 | 332 | 5.28e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041454.t1 | AT3G23600 | 68.201 | 239 | 75 | 1 | 1 | 238 | 1 | 239 | 3.36e-125 | 355 |
| MS.gene041454.t1 | AT3G23600 | 66.946 | 239 | 75 | 2 | 1 | 238 | 1 | 236 | 4.44e-121 | 344 |
| MS.gene041454.t1 | AT3G23570 | 64.017 | 239 | 85 | 1 | 1 | 238 | 1 | 239 | 1.72e-116 | 333 |
| MS.gene041454.t1 | AT3G23570 | 64.017 | 239 | 85 | 1 | 1 | 238 | 1 | 239 | 1.72e-116 | 333 |
| MS.gene041454.t1 | AT3G23570 | 64.017 | 239 | 85 | 1 | 1 | 238 | 1 | 239 | 1.72e-116 | 333 |
| MS.gene041454.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 70 | 273 | 4.70e-18 | 81.3 |
| MS.gene041454.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 111 | 314 | 6.24e-18 | 81.6 |
| MS.gene041454.t1 | AT1G35420 | 28.708 | 209 | 136 | 6 | 37 | 237 | 106 | 309 | 6.35e-18 | 81.3 |
Find 60 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAGGCCCTTGCCTATT+TGG | 0.125625 | 8.2:-11961023 | MS.gene041454:CDS |
| CTTCTTGTCTCCGATGTTTA+TGG | 0.143338 | 8.2:-11962564 | MS.gene041454:intron |
| AGAACAGCAGATTTGGAATT+AGG | 0.211464 | 8.2:+11962585 | None:intergenic |
| CAAATAGGCAAGGGCCTATC+AGG | 0.225941 | 8.2:+11961024 | None:intergenic |
| AATTAGCTATACCTTAAATT+TGG | 0.243468 | 8.2:+11961666 | None:intergenic |
| GATATGAAGCGCCAAATTTA+AGG | 0.244805 | 8.2:-11961677 | MS.gene041454:intron |
| TTCACAGCTTCTGCATCTTC+CGG | 0.247248 | 8.2:+11958750 | None:intergenic |
| TCACAGCTTCTGCATCTTCC+GGG | 0.308736 | 8.2:+11958751 | None:intergenic |
| GACAAGAAGAACAGCAGATT+TGG | 0.309087 | 8.2:+11962578 | None:intergenic |
| TCAGCTCCAAGTATAGAAAA+TGG | 0.312128 | 8.2:+11959134 | None:intergenic |
| GTTTCATCTGTCGGGGCTGC+TGG | 0.315874 | 8.2:-11960623 | MS.gene041454:CDS |
| TGTTTCTGTGGACGACATAA+AGG | 0.316271 | 8.2:-11960327 | MS.gene041454:CDS |
| TGAGGCACATCAAGACTTAC+TGG | 0.332421 | 8.2:-11958718 | MS.gene041454:CDS |
| GATTGTAGGGTTCACCATTA+AGG | 0.341648 | 8.2:+11961055 | None:intergenic |
| GTTGTTCCCGACTTCCTTAA+TGG | 0.344085 | 8.2:-11961069 | MS.gene041454:CDS |
| TTCCTAAAGTTTCCCATGGC+TGG | 0.359638 | 8.2:-11958788 | MS.gene041454:CDS |
| TCAAACTGTTTCACAAGCTC+TGG | 0.361384 | 8.2:+11959092 | None:intergenic |
| ATCAGGGTTCTCGGGATTGT+AGG | 0.369856 | 8.2:+11961041 | None:intergenic |
| GTCCAGCCATGGGAAACTTT+AGG | 0.383013 | 8.2:+11958786 | None:intergenic |
| GTAAAGGTGTTTCATCTGTC+GGG | 0.417259 | 8.2:-11960631 | MS.gene041454:CDS |
| CAAGGGCCTATCAGGGTTCT+CGG | 0.443980 | 8.2:+11961032 | None:intergenic |
| GCAGACAAAGTTGCAGCTGC+TGG | 0.444923 | 8.2:-11961102 | MS.gene041454:CDS |
| CACCGCAGCTTGGATAAGTC+TGG | 0.448910 | 8.2:+11960367 | None:intergenic |
| ACAATCCCGAGAACCCTGAT+AGG | 0.450787 | 8.2:-11961038 | MS.gene041454:CDS |
| CCTATTTGGATAAAAGATCA+TGG | 0.453160 | 8.2:-11961009 | MS.gene041454:CDS |
| CTGAATCCGAATGCAGGATC+TGG | 0.456933 | 8.2:-11962654 | MS.gene041454:CDS |
| CATTCGGATTCAGTGTTGGT+GGG | 0.459033 | 8.2:+11962664 | None:intergenic |
| GTTTCTGTGGACGACATAAA+GGG | 0.461542 | 8.2:-11960326 | MS.gene041454:intron |
| ACGTGACCAGATCCTGCATT+CGG | 0.496584 | 8.2:+11962648 | None:intergenic |
| TCAGGGTTCTCGGGATTGTA+GGG | 0.497761 | 8.2:+11961042 | None:intergenic |
| AGAAAGAAAGAAAGAATGGC+AGG | 0.508375 | 8.2:-11962705 | None:intergenic |
| AAGGGCCTATCAGGGTTCTC+GGG | 0.511101 | 8.2:+11961033 | None:intergenic |
| GCATTCGGATTCAGTGTTGG+TGG | 0.513869 | 8.2:+11962663 | None:intergenic |
| GGTTCACCATTAAGGAAGTC+GGG | 0.517776 | 8.2:+11961063 | None:intergenic |
| AGTAAAGGTGTTTCATCTGT+CGG | 0.519087 | 8.2:-11960632 | MS.gene041454:CDS |
| AACTGTTTCACAAGCTCTGG+AGG | 0.526203 | 8.2:+11959095 | None:intergenic |
| GATGCAACAGCACCGCAGCT+TGG | 0.538985 | 8.2:+11960357 | None:intergenic |
| TGTATCTCACAGTCCAGCCA+TGG | 0.544793 | 8.2:+11958775 | None:intergenic |
| GCATCCATCATTTGTTTCTG+TGG | 0.547944 | 8.2:-11960339 | MS.gene041454:CDS |
| TCGTCCACAGAAACAAATGA+TGG | 0.552834 | 8.2:+11960335 | None:intergenic |
| GCTCTCAATGCCTACATCGT+CGG | 0.557731 | 8.2:-11962612 | MS.gene041454:CDS |
| CTGGACTGTGAGATACAGCC+CGG | 0.557853 | 8.2:-11958769 | MS.gene041454:CDS |
| TCTGGTCACGTTGAAAAGCT+TGG | 0.558124 | 8.2:-11962636 | MS.gene041454:CDS |
| GGGTTCACCATTAAGGAAGT+CGG | 0.562199 | 8.2:+11961062 | None:intergenic |
| AGCTGTGAAAACTGCAGATG+AGG | 0.562425 | 8.2:-11958736 | MS.gene041454:CDS |
| ATTAGGAGAACCGACGATGT+AGG | 0.563292 | 8.2:+11962602 | None:intergenic |
| TGACCGCAGATTTAGCACTA+AGG | 0.564771 | 8.2:+11959063 | None:intergenic |
| TGCAGCTGCTGGTTATTATG+TGG | 0.565842 | 8.2:-11961091 | MS.gene041454:CDS |
| ATATTTCCTAAAGTTTCCCA+TGG | 0.570812 | 8.2:-11958792 | MS.gene041454:CDS |
| CCTGCATTCGGATTCAGTGT+TGG | 0.576766 | 8.2:+11962660 | None:intergenic |
| CCAACACTGAATCCGAATGC+AGG | 0.579836 | 8.2:-11962660 | MS.gene041454:CDS |
| CACATCAAGACTTACTGGAC+TGG | 0.583292 | 8.2:-11958713 | MS.gene041454:CDS |
| GTATCTCACAGTCCAGCCAT+GGG | 0.606707 | 8.2:+11958776 | None:intergenic |
| TTATTATATTAACAGGACAA+AGG | 0.624184 | 8.2:-11960692 | MS.gene041454:intron |
| AAATAGGCAAGGGCCTATCA+GGG | 0.626194 | 8.2:+11961025 | None:intergenic |
| ATCCAGACTTATCCAAGCTG+CGG | 0.640963 | 8.2:-11960369 | MS.gene041454:CDS |
| TAAAGGTGTTTCATCTGTCG+GGG | 0.641381 | 8.2:-11960630 | MS.gene041454:CDS |
| AGAGAAGGTACCATAAACAT+CGG | 0.644639 | 8.2:+11962554 | None:intergenic |
| TTGGATAAAAGATCATGGAA+CGG | 0.646563 | 8.2:-11961004 | MS.gene041454:intron |
| AATCCTTAGTGCTAAATCTG+CGG | 0.663773 | 8.2:-11959066 | MS.gene041454:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAATTTATAAAGT+CGG | - | chr8.2:11959987-11960006 | MS.gene041454:intron | 10.0% |
| !! | AGTTAATAAAGTAAAATGAA+TGG | + | chr8.2:11958934-11958953 | None:intergenic | 15.0% |
| !! | ATACCTATTATTATATTAAC+AGG | - | chr8.2:11960683-11960702 | MS.gene041454:intron | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | chr8.2:11961567-11961586 | None:intergenic | 15.0% |
| !! | TCTTAAAGACTTAAAAATTA+TGG | - | chr8.2:11959000-11959019 | MS.gene041454:intron | 15.0% |
| !!! | ATTCTAATCTTATCTTTTTT+TGG | - | chr8.2:11962386-11962405 | MS.gene041454:intron | 15.0% |
| !!! | ATTTTCTTAAAAAAACTAGA+AGG | - | chr8.2:11959959-11959978 | MS.gene041454:intron | 15.0% |
| !!! | TACAATTAAATGCATATTTT+TGG | + | chr8.2:11961750-11961769 | None:intergenic | 15.0% |
| !!! | TGACTAGATTTTTAATTTAT+AGG | - | chr8.2:11960056-11960075 | MS.gene041454:intron | 15.0% |
| !!! | TTAATTTTCTATTTTGTTTG+TGG | - | chr8.2:11962344-11962363 | MS.gene041454:intron | 15.0% |
| !!! | TTTTCTTAAAAAAACTAGAA+GGG | - | chr8.2:11959960-11959979 | MS.gene041454:intron | 15.0% |
| !!! | TTTTTAATTTGTACTTTTTG+TGG | - | chr8.2:11959584-11959603 | MS.gene041454:intron | 15.0% |
| !! | AAAAAATTAGTCAATCCAAA+CGG | + | chr8.2:11959338-11959357 | None:intergenic | 20.0% |
| !! | AAATTGATTGTAATTACAAC+TGG | + | chr8.2:11961195-11961214 | None:intergenic | 20.0% |
| !! | AAGATTAGAATATCAAAAGA+TGG | + | chr8.2:11962377-11962396 | None:intergenic | 20.0% |
| !! | AATAAATATAACCAATCATG+AGG | + | chr8.2:11961843-11961862 | None:intergenic | 20.0% |
| !! | AATTAGCTATACCTTAAATT+TGG | + | chr8.2:11959719-11959738 | None:intergenic | 20.0% |
| !! | ATCATTTAGTAATGAGAAAT+TGG | + | chr8.2:11959934-11959953 | None:intergenic | 20.0% |
| !! | GTTAATTATTGTTCTTATTC+AGG | - | chr8.2:11962215-11962234 | MS.gene041454:intron | 20.0% |
| !! | TATATACTAGTGCAAAAATT+AGG | - | chr8.2:11961890-11961909 | MS.gene041454:intron | 20.0% |
| !! | TGTCCTGTTAATATAATAAT+AGG | + | chr8.2:11960689-11960708 | None:intergenic | 20.0% |
| !! | TTATTATATTAACAGGACAA+AGG | - | chr8.2:11960690-11960709 | MS.gene041454:intron | 20.0% |
| !!! | ACTTACTGAAACTTTAATTT+TGG | - | chr8.2:11960506-11960525 | MS.gene041454:intron | 20.0% |
| !!! | AGTTCTTATTTAACAATTCT+TGG | - | chr8.2:11960403-11960422 | MS.gene041454:intron | 20.0% |
| !!! | ATGAGAAAATATGATCATTT+TGG | + | chr8.2:11961304-11961323 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTACAACCAAATT+TGG | + | chr8.2:11959267-11959286 | None:intergenic | 20.0% |
| !!! | CATTTTCTACTATAATAAGT+GGG | + | chr8.2:11961502-11961521 | None:intergenic | 20.0% |
| !!! | GTATCAAATTTAGTCATTTT+TGG | - | chr8.2:11959755-11959774 | MS.gene041454:intron | 20.0% |
| !!! | TTTTCTCTTTTACTTATCAA+AGG | + | chr8.2:11960445-11960464 | None:intergenic | 20.0% |
| !!! | TTTTTTTACTTTTTCCTGTT+AGG | - | chr8.2:11959834-11959853 | MS.gene041454:intron | 20.0% |
| ! | AAGAATATAAATGCAGTATG+AGG | + | chr8.2:11959555-11959574 | None:intergenic | 25.0% |
| ! | AAGTAACAAAAATCAGCATT+TGG | - | chr8.2:11959630-11959649 | MS.gene041454:intron | 25.0% |
| ! | ACAGTTTATCTAACTTATGT+CGG | - | chr8.2:11962055-11962074 | MS.gene041454:intron | 25.0% |
| ! | AGAATATAAATGCAGTATGA+GGG | + | chr8.2:11959554-11959573 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATCAGCATTT+GGG | - | chr8.2:11959631-11959650 | MS.gene041454:intron | 25.0% |
| ! | AGTTAGATAAACTGTAACAA+AGG | + | chr8.2:11962050-11962069 | None:intergenic | 25.0% |
| ! | ATATGTGTGAAATGAGTAAA+TGG | - | chr8.2:11961587-11961606 | MS.gene041454:intron | 25.0% |
| ! | ATGAAACATGTAGATTGTAT+TGG | + | chr8.2:11960172-11960191 | None:intergenic | 25.0% |
| ! | ATGAGAAATTATAAGCGAAA+AGG | + | chr8.2:11960126-11960145 | None:intergenic | 25.0% |
| ! | ATTGAAGCCATAAAAAGTAA+AGG | - | chr8.2:11960735-11960754 | MS.gene041454:intron | 25.0% |
| ! | ATTTGAACACGTTAAAATTG+TGG | + | chr8.2:11958977-11958996 | None:intergenic | 25.0% |
| ! | CTTATAATTTCTCATGTTGT+TGG | - | chr8.2:11960131-11960150 | MS.gene041454:intron | 25.0% |
| ! | GATATTATCATTATCAACTC+TGG | + | chr8.2:11959316-11959335 | None:intergenic | 25.0% |
| ! | GATGCATAAGAAATAATTTG+AGG | + | chr8.2:11960839-11960858 | None:intergenic | 25.0% |
| ! | GTTGTATTGAAAAGTGAAAT+GGG | + | chr8.2:11961454-11961473 | None:intergenic | 25.0% |
| ! | TAATGCCAATAGAATATGTA+AGG | + | chr8.2:11961367-11961386 | None:intergenic | 25.0% |
| ! | TAGTACCTTACATATTCTAT+TGG | - | chr8.2:11961359-11961378 | MS.gene041454:intron | 25.0% |
| ! | TAGTGTTTAAAAAGGTGAAA+AGG | + | chr8.2:11962525-11962544 | None:intergenic | 25.0% |
| ! | TGAGTTACTAGTGTTTAAAA+AGG | + | chr8.2:11962533-11962552 | None:intergenic | 25.0% |
| ! | TGTTGTATTGAAAAGTGAAA+TGG | + | chr8.2:11961455-11961474 | None:intergenic | 25.0% |
| ! | TTCAGTAAGTATACAAAAAC+TGG | + | chr8.2:11960496-11960515 | None:intergenic | 25.0% |
| ! | TTGTATAAGATGCAGTTTAA+TGG | - | chr8.2:11961930-11961949 | MS.gene041454:intron | 25.0% |
| !! | ACTTTTTATGGCTTCAATTA+TGG | + | chr8.2:11960733-11960752 | None:intergenic | 25.0% |
| !! | ATAAGAAATAATTTGAGGTG+TGG | + | chr8.2:11960834-11960853 | None:intergenic | 25.0% |
| !! | ATTTAAGGTATAGCTAATTC+TGG | - | chr8.2:11959720-11959739 | MS.gene041454:intron | 25.0% |
| !! | CGTAGAATTATTTGGTTTAT+TGG | - | chr8.2:11960091-11960110 | MS.gene041454:intron | 25.0% |
| !! | CTTTTTATGGCTTCAATTAT+GGG | + | chr8.2:11960732-11960751 | None:intergenic | 25.0% |
| !! | GCATTTTCTACTATAATAAG+TGG | + | chr8.2:11961503-11961522 | None:intergenic | 25.0% |
| !! | GGAAATATTTTCACAAAACT+TGG | + | chr8.2:11962578-11962597 | None:intergenic | 25.0% |
| !! | TAAGAAATAATTTGAGGTGT+GGG | + | chr8.2:11960833-11960852 | None:intergenic | 25.0% |
| !! | TAATTTGCGTATTGTTTGTA+TGG | - | chr8.2:11961096-11961115 | MS.gene041454:CDS | 25.0% |
| !! | TGATAATGATAATATCCGTT+TGG | - | chr8.2:11959320-11959339 | MS.gene041454:intron | 25.0% |
| !! | TTAATGTTTGAAATGCAACT+AGG | - | chr8.2:11960918-11960937 | MS.gene041454:intron | 25.0% |
| !!! | CTTGTATGTTTTCAAGTAAT+AGG | - | chr8.2:11961229-11961248 | MS.gene041454:intron | 25.0% |
| !!! | TGAAACACCTTTACTTTTTA+TGG | + | chr8.2:11960745-11960764 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTGTATCAGCTA+AGG | - | chr8.2:11960971-11960990 | MS.gene041454:intron | 25.0% |
| AGGTACTAGTACCAAATAAT+AGG | + | chr8.2:11961347-11961366 | None:intergenic | 30.0% | |
| AGGTGATTAATTACTTTCAG+TGG | + | chr8.2:11959200-11959219 | None:intergenic | 30.0% | |
| ATATTTCCTAAAGTTTCCCA+TGG | - | chr8.2:11962590-11962609 | MS.gene041454:CDS | 30.0% | |
| ATCATGTGAACACATTACAA+TGG | + | chr8.2:11960223-11960242 | None:intergenic | 30.0% | |
| ATTATCATTATCAACTCTGG+TGG | + | chr8.2:11959313-11959332 | None:intergenic | 30.0% | |
| ATTTATCCCTTGCAATAACA+AGG | + | chr8.2:11959797-11959816 | None:intergenic | 30.0% | |
| CCTATTTGGATAAAAGATCA+TGG | - | chr8.2:11960373-11960392 | MS.gene041454:CDS | 30.0% | |
| CTCGGTATTAATTGATTACT+TGG | - | chr8.2:11962081-11962100 | MS.gene041454:intron | 30.0% | |
| CTGTTAGAATATGAACATCT+CGG | + | chr8.2:11962196-11962215 | None:intergenic | 30.0% | |
| GACGATAAATATGGTCATTA+AGG | + | chr8.2:11961268-11961287 | None:intergenic | 30.0% | |
| GCATTTGTCGTAGAATTATT+TGG | - | chr8.2:11960083-11960102 | MS.gene041454:intron | 30.0% | |
| GTGGTTAACAAGATTCAAAT+AGG | + | chr8.2:11959220-11959239 | None:intergenic | 30.0% | |
| TAAGTGCTCTTGTTAAGTAT+TGG | + | chr8.2:11961527-11961546 | None:intergenic | 30.0% | |
| TAATGACCATATTTATCGTC+AGG | - | chr8.2:11961268-11961287 | MS.gene041454:intron | 30.0% | |
| TACCAAATAATAGGCAACTA+TGG | + | chr8.2:11961338-11961357 | None:intergenic | 30.0% | |
| TACTATTCATAAGCTTGTCA+AGG | - | chr8.2:11959400-11959419 | MS.gene041454:intron | 30.0% | |
| TAGAATTCAAGAAACCTAAC+AGG | + | chr8.2:11959851-11959870 | None:intergenic | 30.0% | |
| TTAATTGTAACATACAGCAG+AGG | - | chr8.2:11961761-11961780 | MS.gene041454:intron | 30.0% | |
| TTGGATAAAAGATCATGGAA+CGG | - | chr8.2:11960378-11960397 | MS.gene041454:CDS | 30.0% | |
| ! | AAATTGGATTAGAGAGAACA+TGG | + | chr8.2:11959918-11959937 | None:intergenic | 30.0% |
| ! | ATCTTTTATCCAAATAGGCA+AGG | + | chr8.2:11960371-11960390 | None:intergenic | 30.0% |
| ! | CAAATGTTTTCGTACAGAAA+AGG | + | chr8.2:11960867-11960886 | None:intergenic | 30.0% |
| ! | CATTTAACTTATGCTTCTAG+AGG | - | chr8.2:11961959-11961978 | MS.gene041454:intron | 30.0% |
| ! | CCATGATCTTTTATCCAAAT+AGG | + | chr8.2:11960376-11960395 | None:intergenic | 30.0% |
| ! | GACATTCCATTTTCTATACT+TGG | - | chr8.2:11962242-11962261 | MS.gene041454:intron | 30.0% |
| ! | TCTTTTATCCAAATAGGCAA+GGG | + | chr8.2:11960370-11960389 | None:intergenic | 30.0% |
| ! | TTGTTATTGCAAGGGATAAA+TGG | - | chr8.2:11959796-11959815 | MS.gene041454:intron | 30.0% |
| !! | ATATGCTTAATTTGTCTTGC+AGG | - | chr8.2:11959683-11959702 | MS.gene041454:intron | 30.0% |
| !! | TTTGGCAACAACTTTTTAAG+TGG | + | chr8.2:11959239-11959258 | None:intergenic | 30.0% |
| !!! | AACTCATGAACCTATTTTTG+TGG | - | chr8.2:11962547-11962566 | MS.gene041454:intron | 30.0% |
| !!! | ACATTTTTTTGCAAATGGCT+CGG | + | chr8.2:11961414-11961433 | None:intergenic | 30.0% |
| !!! | GGACAACATTTTTTTGCAAA+TGG | + | chr8.2:11961419-11961438 | None:intergenic | 30.0% |
| !!! | TGAAATGGGTCAACTTTTTT+GGG | + | chr8.2:11961440-11961459 | None:intergenic | 30.0% |
| AAAACATTTGAGCTCGTCAT+AGG | - | chr8.2:11960877-11960896 | MS.gene041454:intron | 35.0% | |
| AAAATAAGCCCAATCCAAAC+AGG | - | chr8.2:11959528-11959547 | MS.gene041454:intron | 35.0% | |
| AAGCATATGCAGTTAGTAGA+AGG | + | chr8.2:11959671-11959690 | None:intergenic | 35.0% | |
| AATAGGTATGCATCAGAGAA+TGG | + | chr8.2:11960672-11960691 | None:intergenic | 35.0% | |
| AATCCTTAGTGCTAAATCTG+CGG | - | chr8.2:11962316-11962335 | MS.gene041454:intron | 35.0% | |
| AGGCTAATTACATGCTACAT+AGG | - | chr8.2:11961979-11961998 | MS.gene041454:intron | 35.0% | |
| ATCAAAACCACCAATAAAGG+TGG | + | chr8.2:11960600-11960619 | None:intergenic | 35.0% | |
| ATGGCTCAGTTAATCTAGAA+CGG | - | chr8.2:11961606-11961625 | MS.gene041454:intron | 35.0% | |
| CAACCAAATTTGGAGAACTT+TGG | + | chr8.2:11959257-11959276 | None:intergenic | 35.0% | |
| CACCATAGTTGCCTATTATT+TGG | - | chr8.2:11961333-11961352 | MS.gene041454:intron | 35.0% | |
| CACGTTAAAATTGTGGTTGA+TGG | + | chr8.2:11958970-11958989 | None:intergenic | 35.0% | |
| GAATTAGAGAAGAGAAGAGA+AGG | + | chr8.2:11958846-11958865 | None:intergenic | 35.0% | |
| TCAAAACCACCAATAAAGGT+GGG | + | chr8.2:11960599-11960618 | None:intergenic | 35.0% | |
| TCAGCTCCAAGTATAGAAAA+TGG | + | chr8.2:11962251-11962270 | None:intergenic | 35.0% | |
| TCTAACTTATGTCGGTAACT+CGG | - | chr8.2:11962063-11962082 | MS.gene041454:intron | 35.0% | |
| TGCATGTGTTTCATAGTTCA+TGG | - | chr8.2:11959133-11959152 | MS.gene041454:CDS | 35.0% | |
| TTGCCAAAGTTCTCCAAATT+TGG | - | chr8.2:11959251-11959270 | MS.gene041454:intron | 35.0% | |
| TTGTTTGTTCACTGCTTTGA+AGG | - | chr8.2:11960251-11960270 | MS.gene041454:intron | 35.0% | |
| ! | AGAACAGCAGATTTGGAATT+AGG | + | chr8.2:11958800-11958819 | None:intergenic | 35.0% |
| ! | ATGCAGTTAGTAGAAGGTTT+TGG | + | chr8.2:11959665-11959684 | None:intergenic | 35.0% |
| ! | CATTAGCCTGACGATAAATA+TGG | + | chr8.2:11961277-11961296 | None:intergenic | 35.0% |
| ! | GATATGAAGCGCCAAATTTA+AGG | - | chr8.2:11959705-11959724 | MS.gene041454:intron | 35.0% |
| ! | TAAGATGCAGTTTAATGGAC+TGG | - | chr8.2:11961935-11961954 | MS.gene041454:intron | 35.0% |
| !! | AAGATGCAGTTTAATGGACT+GGG | - | chr8.2:11961936-11961955 | MS.gene041454:intron | 35.0% |
| !! | AGAGAAGGTACCATAAACAT+CGG | + | chr8.2:11958831-11958850 | None:intergenic | 35.0% |
| !! | AGTAAAGGTGTTTCATCTGT+CGG | - | chr8.2:11960750-11960769 | MS.gene041454:intron | 35.0% |
| !! | CATGTACCTTGTTATTGCAA+GGG | - | chr8.2:11959788-11959807 | MS.gene041454:intron | 35.0% |
| !! | GCAGAGGTATTTAAACACAA+TGG | - | chr8.2:11961777-11961796 | MS.gene041454:intron | 35.0% |
| !! | TTTTCGTACAGAAAAGGTGT+GGG | + | chr8.2:11960861-11960880 | None:intergenic | 35.0% |
| !!! | CCTTTATTGGTGGTTTTGAT+CGG | - | chr8.2:11960600-11960619 | MS.gene041454:intron | 35.0% |
| !!! | GTGAAATGGGTCAACTTTTT+TGG | + | chr8.2:11961441-11961460 | None:intergenic | 35.0% |
| AACAAAGGACGCAAAGACAA+TGG | + | chr8.2:11962035-11962054 | None:intergenic | 40.0% | |
| AAGCTAAACACACGCATTGT+TGG | - | chr8.2:11962461-11962480 | MS.gene041454:intron | 40.0% | |
| ACAAAGGACGCAAAGACAAT+GGG | + | chr8.2:11962034-11962053 | None:intergenic | 40.0% | |
| ATCATTATCAACTCTGGTGG+TGG | + | chr8.2:11959310-11959329 | None:intergenic | 40.0% | |
| CCGATCAAAACCACCAATAA+AGG | + | chr8.2:11960603-11960622 | None:intergenic | 40.0% | |
| CTTCTTGTCTCCGATGTTTA+TGG | - | chr8.2:11958818-11958837 | MS.gene041454:intron | 40.0% | |
| GACAAGAAGAACAGCAGATT+TGG | + | chr8.2:11958807-11958826 | None:intergenic | 40.0% | |
| GATTGTAGGGTTCACCATTA+AGG | + | chr8.2:11960330-11960349 | None:intergenic | 40.0% | |
| GTTTCTGTGGACGACATAAA+GGG | - | chr8.2:11961056-11961075 | MS.gene041454:CDS | 40.0% | |
| TATGAAACACATGCACTCCT+CGG | + | chr8.2:11959128-11959147 | None:intergenic | 40.0% | |
| TCAAACTGTTTCACAAGCTC+TGG | + | chr8.2:11962293-11962312 | None:intergenic | 40.0% | |
| TCGTCCACAGAAACAAATGA+TGG | + | chr8.2:11961050-11961069 | None:intergenic | 40.0% | |
| ! | CTCAGTTAATCTAGAACGGA+GGG | - | chr8.2:11961610-11961629 | MS.gene041454:intron | 40.0% |
| ! | GTTTTCGTACAGAAAAGGTG+TGG | + | chr8.2:11960862-11960881 | None:intergenic | 40.0% |
| ! | TCCTAGTGTTTTACATGCGT+CGG | + | chr8.2:11959095-11959114 | None:intergenic | 40.0% |
| ! | TGTTTCTGTGGACGACATAA+AGG | - | chr8.2:11961055-11961074 | MS.gene041454:CDS | 40.0% |
| !! | GCAAATGGCTCGGTTATTAT+GGG | + | chr8.2:11961404-11961423 | None:intergenic | 40.0% |
| !! | GCATCCATCATTTGTTTCTG+TGG | - | chr8.2:11961043-11961062 | MS.gene041454:CDS | 40.0% |
| !! | GCATGTACCTTGTTATTGCA+AGG | - | chr8.2:11959787-11959806 | MS.gene041454:intron | 40.0% |
| !! | GTAAAGGTGTTTCATCTGTC+GGG | - | chr8.2:11960751-11960770 | MS.gene041454:intron | 40.0% |
| !! | TAAAGGTGTTTCATCTGTCG+GGG | - | chr8.2:11960752-11960771 | MS.gene041454:intron | 40.0% |
| !! | TGCAAATGGCTCGGTTATTA+TGG | + | chr8.2:11961405-11961424 | None:intergenic | 40.0% |
| AAACCACCAATAAAGGTGGG+AGG | + | chr8.2:11960596-11960615 | None:intergenic | 45.0% | |
| AAAGCAGTGCTCACATAAGC+AGG | + | chr8.2:11959877-11959896 | None:intergenic | 45.0% | |
| AAATAGGCAAGGGCCTATCA+GGG | + | chr8.2:11960360-11960379 | None:intergenic | 45.0% | |
| ACTAGGACACAGTTAATCCG+AGG | - | chr8.2:11959108-11959127 | MS.gene041454:CDS | 45.0% | |
| AGCTGTGAAAACTGCAGATG+AGG | - | chr8.2:11962646-11962665 | MS.gene041454:CDS | 45.0% | |
| AGTTCGTGGTCTATGAAGCA+CGG | - | chr8.2:11959036-11959055 | MS.gene041454:intron | 45.0% | |
| ATCCAGACTTATCCAAGCTG+CGG | - | chr8.2:11961013-11961032 | MS.gene041454:CDS | 45.0% | |
| ATTAGGAGAACCGACGATGT+AGG | + | chr8.2:11958783-11958802 | None:intergenic | 45.0% | |
| CAATAAAGGTGGGAGGACAA+TGG | + | chr8.2:11960589-11960608 | None:intergenic | 45.0% | |
| CACATCAAGACTTACTGGAC+TGG | - | chr8.2:11962669-11962688 | MS.gene041454:CDS | 45.0% | |
| CATTGTCCTCCCACCTTTAT+TGG | - | chr8.2:11960587-11960606 | MS.gene041454:intron | 45.0% | |
| CTTGGCTGCACCACAAAAAT+AGG | + | chr8.2:11962560-11962579 | None:intergenic | 45.0% | |
| GACGCAAAGACAATGGGAAA+AGG | + | chr8.2:11962028-11962047 | None:intergenic | 45.0% | |
| GGGTTCACCATTAAGGAAGT+CGG | + | chr8.2:11960323-11960342 | None:intergenic | 45.0% | |
| GGTTCACCATTAAGGAAGTC+GGG | + | chr8.2:11960322-11960341 | None:intergenic | 45.0% | |
| GTACTTAGCTGCCTCATGAT+TGG | - | chr8.2:11961829-11961848 | MS.gene041454:intron | 45.0% | |
| GTTAACTACGTCCAAGTTCG+TGG | - | chr8.2:11959022-11959041 | MS.gene041454:intron | 45.0% | |
| GTTGTTCCCGACTTCCTTAA+TGG | - | chr8.2:11960313-11960332 | MS.gene041454:intron | 45.0% | |
| TATGAGGGCCTGTTTGGATT+GGG | + | chr8.2:11959539-11959558 | None:intergenic | 45.0% | |
| TCTGGTCACGTTGAAAAGCT+TGG | - | chr8.2:11958746-11958765 | MS.gene041454:CDS | 45.0% | |
| TGACCGCAGATTTAGCACTA+AGG | + | chr8.2:11962322-11962341 | None:intergenic | 45.0% | |
| TGAGGCACATCAAGACTTAC+TGG | - | chr8.2:11962664-11962683 | MS.gene041454:CDS | 45.0% | |
| TGCTTCATAGACCACGAACT+TGG | + | chr8.2:11959036-11959055 | None:intergenic | 45.0% | |
| TTCACAGCTTCTGCATCTTC+CGG | + | chr8.2:11962635-11962654 | None:intergenic | 45.0% | |
| TTCCTAAAGTTTCCCATGGC+TGG | - | chr8.2:11962594-11962613 | MS.gene041454:CDS | 45.0% | |
| ! | AACTGTTTCACAAGCTCTGG+AGG | + | chr8.2:11962290-11962309 | None:intergenic | 45.0% |
| ! | GCTCAGTTAATCTAGAACGG+AGG | - | chr8.2:11961609-11961628 | MS.gene041454:intron | 45.0% |
| ! | TGCAGCTGCTGGTTATTATG+TGG | - | chr8.2:11960291-11960310 | MS.gene041454:intron | 45.0% |
| !! | ATGGCTCGGTTATTATGGGA+CGG | + | chr8.2:11961400-11961419 | None:intergenic | 45.0% |
| !! | CATTCGGATTCAGTGTTGGT+GGG | + | chr8.2:11958721-11958740 | None:intergenic | 45.0% |
| !! | AAAAAAAAGTTAAATAAAAA+TGG | + | chr8.2:11958872-11958891 | None:intergenic | 5.0% |
| !!! | CATATTTTTTTTTTTTTTTT+TGG | - | chr8.2:11962435-11962454 | MS.gene041454:intron | 5.0% |
| ACAATCCCGAGAACCCTGAT+AGG | - | chr8.2:11960344-11960363 | MS.gene041454:CDS | 50.0% | |
| ACGTGACCAGATCCTGCATT+CGG | + | chr8.2:11958737-11958756 | None:intergenic | 50.0% | |
| ATCAGGGTTCTCGGGATTGT+AGG | + | chr8.2:11960344-11960363 | None:intergenic | 50.0% | |
| ATGCAGTATGAGGGCCTGTT+TGG | + | chr8.2:11959545-11959564 | None:intergenic | 50.0% | |
| CAAATAGGCAAGGGCCTATC+AGG | + | chr8.2:11960361-11960380 | None:intergenic | 50.0% | |
| CCAACACTGAATCCGAATGC+AGG | - | chr8.2:11958722-11958741 | MS.gene041454:CDS | 50.0% | |
| CCTGCATTCGGATTCAGTGT+TGG | + | chr8.2:11958725-11958744 | None:intergenic | 50.0% | |
| CTCGGTTATTATGGGACGGA+GGG | + | chr8.2:11961396-11961415 | None:intergenic | 50.0% | |
| CTGAATCCGAATGCAGGATC+TGG | - | chr8.2:11958728-11958747 | MS.gene041454:CDS | 50.0% | |
| CTGATAGGCCCTTGCCTATT+TGG | - | chr8.2:11960359-11960378 | MS.gene041454:CDS | 50.0% | |
| GCCGACGCATGTAAAACACT+AGG | - | chr8.2:11959091-11959110 | MS.gene041454:CDS | 50.0% | |
| GCTCTCAATGCCTACATCGT+CGG | - | chr8.2:11958770-11958789 | MS.gene041454:CDS | 50.0% | |
| GTATCTCACAGTCCAGCCAT+GGG | + | chr8.2:11962609-11962628 | None:intergenic | 50.0% | |
| GTATGAGGGCCTGTTTGGAT+TGG | + | chr8.2:11959540-11959559 | None:intergenic | 50.0% | |
| GTCCAGCCATGGGAAACTTT+AGG | + | chr8.2:11962599-11962618 | None:intergenic | 50.0% | |
| TCACAGCTTCTGCATCTTCC+GGG | + | chr8.2:11962634-11962653 | None:intergenic | 50.0% | |
| TCAGGGTTCTCGGGATTGTA+GGG | + | chr8.2:11960343-11960362 | None:intergenic | 50.0% | |
| TGTATCTCACAGTCCAGCCA+TGG | + | chr8.2:11962610-11962629 | None:intergenic | 50.0% | |
| TGTCCTCCCACCTTTATTGG+TGG | - | chr8.2:11960590-11960609 | MS.gene041454:intron | 50.0% | |
| ! | GCATTCGGATTCAGTGTTGG+TGG | + | chr8.2:11958722-11958741 | None:intergenic | 50.0% |
| AAGGGCCTATCAGGGTTCTC+GGG | + | chr8.2:11960352-11960371 | None:intergenic | 55.0% | |
| CAAGGGCCTATCAGGGTTCT+CGG | + | chr8.2:11960353-11960372 | None:intergenic | 55.0% | |
| CACCGCAGCTTGGATAAGTC+TGG | + | chr8.2:11961018-11961037 | None:intergenic | 55.0% | |
| CTGGACTGTGAGATACAGCC+CGG | - | chr8.2:11962613-11962632 | MS.gene041454:CDS | 55.0% | |
| GCAGACAAAGTTGCAGCTGC+TGG | - | chr8.2:11960280-11960299 | MS.gene041454:intron | 55.0% | |
| GCTCGGTTATTATGGGACGG+AGG | + | chr8.2:11961397-11961416 | None:intergenic | 55.0% | |
| GGTCTATGAAGCACGGACAC+CGG | - | chr8.2:11959043-11959062 | MS.gene041454:intron | 55.0% | |
| ! | CGGGGCTGCTGGATTTTGTT+GGG | - | chr8.2:11960770-11960789 | MS.gene041454:intron | 55.0% |
| ! | GCTGCTGGATTTTGTTGGGG+TGG | - | chr8.2:11960774-11960793 | MS.gene041454:intron | 55.0% |
| ! | GGGGCTGCTGGATTTTGTTG+GGG | - | chr8.2:11960771-11960790 | MS.gene041454:intron | 55.0% |
| ! | TCGGGGCTGCTGGATTTTGT+TGG | - | chr8.2:11960769-11960788 | MS.gene041454:intron | 55.0% |
| !! | GTTTTACATGCGTCGGCGTC+CGG | + | chr8.2:11959088-11959107 | None:intergenic | 55.0% |
| ACACCACACACCGACGACAC+CGG | - | chr8.2:11959066-11959085 | MS.gene041454:intron | 60.0% | |
| GATGCAACAGCACCGCAGCT+TGG | + | chr8.2:11961028-11961047 | None:intergenic | 60.0% | |
| GTTTCATCTGTCGGGGCTGC+TGG | - | chr8.2:11960759-11960778 | MS.gene041454:intron | 60.0% | |
| TGTCGTCGGTGTGTGGTGTC+CGG | + | chr8.2:11959065-11959084 | None:intergenic | 60.0% | |
| !! | CGTCCGGTGTCGTCGGTGTG+TGG | + | chr8.2:11959072-11959091 | None:intergenic | 70.0% |
| !! | GCGTCGGCGTCCGGTGTCGT+CGG | + | chr8.2:11959079-11959098 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 11958692 | 11962712 | 11958692 | ID=MS.gene041454 |
| chr8.2 | mRNA | 11958692 | 11962712 | 11958692 | ID=MS.gene041454.t1;Parent=MS.gene041454 |
| chr8.2 | exon | 11962565 | 11962712 | 11962565 | ID=MS.gene041454.t1.exon1;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11962565 | 11962712 | 11962565 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11961678 | 11961699 | 11961678 | ID=MS.gene041454.t1.exon2;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11961678 | 11961699 | 11961678 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11961005 | 11961131 | 11961005 | ID=MS.gene041454.t1.exon3;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11961005 | 11961131 | 11961005 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11960609 | 11960699 | 11960609 | ID=MS.gene041454.t1.exon4;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11960609 | 11960699 | 11960609 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11960327 | 11960416 | 11960327 | ID=MS.gene041454.t1.exon5;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11960327 | 11960416 | 11960327 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11959067 | 11959167 | 11959067 | ID=MS.gene041454.t1.exon6;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11959067 | 11959167 | 11959067 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| chr8.2 | exon | 11958692 | 11958829 | 11958692 | ID=MS.gene041454.t1.exon7;Parent=MS.gene041454.t1 |
| chr8.2 | CDS | 11958692 | 11958829 | 11958692 | ID=cds.MS.gene041454.t1;Parent=MS.gene041454.t1 |
| Gene Sequence |
| Protein sequence |
