Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042039.t1 | KEH32763.1 | 98.8 | 569 | 7 | 0 | 1 | 569 | 11 | 579 | 0.00E+00 | 1136.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042039.t1 | Q9M9Y8 | 31.1 | 550 | 325 | 17 | 36 | 565 | 66 | 581 | 3.8e-57 | 224.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042039.t1 | A0A072UUM0 | 98.8 | 569 | 7 | 0 | 1 | 569 | 11 | 579 | 0.0e+00 | 1136.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene46506 | MS.gene042039 | PPI |
MS.gene042039 | MS.gene39233 | PPI |
MS.gene034659 | MS.gene042039 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042039.t1 | MTR_4g134780 | 98.770 | 569 | 7 | 0 | 1 | 569 | 11 | 579 | 0.0 | 1165 |
MS.gene042039.t1 | MTR_1g054965 | 31.504 | 565 | 320 | 21 | 23 | 556 | 42 | 570 | 1.70e-62 | 216 |
MS.gene042039.t1 | MTR_1g054965 | 33.521 | 355 | 217 | 12 | 209 | 556 | 72 | 414 | 3.79e-50 | 179 |
MS.gene042039.t1 | MTR_1g054965 | 29.000 | 500 | 292 | 19 | 23 | 494 | 42 | 506 | 3.04e-42 | 159 |
MS.gene042039.t1 | MTR_1g054965 | 29.655 | 290 | 189 | 10 | 209 | 494 | 30 | 308 | 6.08e-30 | 120 |
MS.gene042039.t1 | MTR_8g077580 | 24.483 | 580 | 331 | 26 | 30 | 540 | 4 | 545 | 6.10e-15 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042039.t1 | AT1G57770 | 80.762 | 525 | 101 | 0 | 45 | 569 | 50 | 574 | 0.0 | 899 |
MS.gene042039.t1 | AT1G06820 | 31.569 | 529 | 311 | 16 | 45 | 556 | 75 | 569 | 1.13e-64 | 222 |
MS.gene042039.t1 | AT1G06820 | 31.569 | 529 | 311 | 16 | 45 | 556 | 75 | 569 | 1.38e-64 | 222 |
MS.gene042039.t1 | AT1G06820 | 33.898 | 354 | 217 | 9 | 209 | 556 | 108 | 450 | 1.79e-52 | 186 |
MS.gene042039.t1 | AT1G06820 | 29.284 | 461 | 277 | 15 | 45 | 489 | 75 | 502 | 7.84e-44 | 164 |
MS.gene042039.t1 | AT5G49555 | 22.968 | 566 | 343 | 26 | 37 | 540 | 3 | 537 | 5.68e-14 | 75.1 |
Find 146 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCAAAGAGTCAAGTATT+TGG | 0.236602 | 8.3:+90174 | None:intergenic |
ATTGCTCACAACAGCCTTCT+TGG | 0.241353 | 8.3:+89426 | None:intergenic |
TGCTCAAGTTCTTGATGCTT+TGG | 0.242947 | 8.3:-90522 | MS.gene042039:CDS |
TCAAGAATGGCAGAAGCTTT+TGG | 0.272982 | 8.3:-90372 | MS.gene042039:CDS |
TTACTTTCTTTCTTGCTTGC+TGG | 0.273947 | 8.3:-90119 | MS.gene042039:CDS |
TGCCATTCTTGAACAGCTTC+AGG | 0.275584 | 8.3:+90383 | None:intergenic |
GAGTCAAGTATTTGGGAAAA+AGG | 0.286218 | 8.3:+90182 | None:intergenic |
GCTCAAGTTCTTGATGCTTT+GGG | 0.288521 | 8.3:-90521 | MS.gene042039:CDS |
TTCCAAAGTCTTACTCAAAT+AGG | 0.312564 | 8.3:-89360 | MS.gene042039:CDS |
ATCATATAGTTGTAAATGAT+TGG | 0.312848 | 8.3:-89173 | MS.gene042039:CDS |
AACTCAAATGGTTCAGTTCC+TGG | 0.320765 | 8.3:+89045 | None:intergenic |
ATCTTTCATGCATCTCCATT+TGG | 0.323021 | 8.3:-89314 | MS.gene042039:CDS |
CTGAGGACCCATTTGGAAAA+AGG | 0.326579 | 8.3:+90235 | None:intergenic |
GCTGGTACAGATACCTTTCC+TGG | 0.338263 | 8.3:-88738 | MS.gene042039:CDS |
TTGCAAAGAGTCAAGTATTT+GGG | 0.338675 | 8.3:+90175 | None:intergenic |
AGCTTTAAGATTTCTGTATT+CGG | 0.338946 | 8.3:+88996 | None:intergenic |
CTATCTGTTCGAGGAGATTT+CGG | 0.340613 | 8.3:-90305 | MS.gene042039:CDS |
GTGTTACATGCTTATCTTCC+AGG | 0.349073 | 8.3:-89063 | MS.gene042039:CDS |
CAACAATAAAGGTGTGGAAT+TGG | 0.355420 | 8.3:+88705 | None:intergenic |
TCTTTCATGCATCTCCATTT+GGG | 0.358441 | 8.3:-89313 | MS.gene042039:CDS |
TCCCAGCTGCTTGATGCAAT+TGG | 0.358531 | 8.3:-88591 | MS.gene042039:CDS |
CCTGCGCTACTTATGATTCA+TGG | 0.371994 | 8.3:-90487 | MS.gene042039:CDS |
GAAACAGATGTAATTGTGAT+TGG | 0.389065 | 8.3:-90731 | MS.gene042039:CDS |
ATCCTATTTGAGTAAGACTT+TGG | 0.389095 | 8.3:+89358 | None:intergenic |
CTCACTCTCATTACATTACA+AGG | 0.391228 | 8.3:+90863 | None:intergenic |
TGGAGTCTCCACAACAATAA+AGG | 0.393345 | 8.3:+88694 | None:intergenic |
AGAATCCTTTCATACGCAAT+TGG | 0.397759 | 8.3:-90148 | MS.gene042039:CDS |
ACTCCTAATCTGGCACCTAC+TGG | 0.397996 | 8.3:-89093 | MS.gene042039:CDS |
TTCCAATTGCATCAAGCAGC+TGG | 0.400845 | 8.3:+88589 | None:intergenic |
CATTTCTCCCTGCTGAATCC+TGG | 0.401568 | 8.3:+88843 | None:intergenic |
TCATATAGTTGTAAATGATT+GGG | 0.417919 | 8.3:-89172 | MS.gene042039:CDS |
TAGTGTACTTACTCCTAATC+TGG | 0.419014 | 8.3:-89103 | MS.gene042039:CDS |
AACTGAACCATTTGAGTTGT+GGG | 0.419173 | 8.3:-89040 | MS.gene042039:CDS |
TCCGGTCCATCATTATTCTC+TGG | 0.421373 | 8.3:-90578 | MS.gene042039:CDS |
CAGGGTATACGCAGCAATCT+AGG | 0.423282 | 8.3:-89201 | MS.gene042039:CDS |
ATTGTGATTGGGAGTGGTAT+TGG | 0.424946 | 8.3:-90719 | MS.gene042039:CDS |
GTCATAGTAATGGGAGGATT+AGG | 0.428264 | 8.3:-90802 | MS.gene042039:CDS |
GTTGTAAATGATTGGGAAAG+AGG | 0.432129 | 8.3:-89165 | MS.gene042039:CDS |
GAGCAGCCTGAGGACCCATT+TGG | 0.432543 | 8.3:+90228 | None:intergenic |
TCACACATCAAAGGTTTCTT+CGG | 0.434054 | 8.3:-88794 | MS.gene042039:CDS |
GTACGAGGACTAGAGAAGTT+TGG | 0.436491 | 8.3:-89615 | MS.gene042039:CDS |
ATCATCATAGTCATAGTAAT+GGG | 0.437707 | 8.3:-90811 | MS.gene042039:CDS |
CGTGACAAGAAATCAGCTTC+AGG | 0.438051 | 8.3:+90452 | None:intergenic |
AAATCTCCTCGAACAGATAG+AGG | 0.446661 | 8.3:+90308 | None:intergenic |
ACTGCAGGGACGCCAATGCC+AGG | 0.458440 | 8.3:+88666 | None:intergenic |
AAATGTGAAGTGAAGTTAGT+TGG | 0.458953 | 8.3:-88825 | MS.gene042039:CDS |
ACTTTGGAACAACTTCTTGA+GGG | 0.464503 | 8.3:+89374 | None:intergenic |
GCACCACTGGCAGCAACTGC+AGG | 0.466053 | 8.3:+88651 | None:intergenic |
TCTGTACCAGCTTGTATAGC+TGG | 0.473355 | 8.3:+88750 | None:intergenic |
CAGTGGGACCAGGATTCAGC+AGG | 0.478022 | 8.3:-88851 | MS.gene042039:CDS |
AGGTTTACATGTTTGCAGAA+TGG | 0.481167 | 8.3:-89701 | MS.gene042039:CDS |
AAAGGCTATAAGTTTGATTC+CGG | 0.484501 | 8.3:-90596 | MS.gene042039:CDS |
GATTAGGAAAGGTGGGGTTG+TGG | 0.485581 | 8.3:-90786 | MS.gene042039:CDS |
ATTCCACACCTTTATTGTTG+TGG | 0.492890 | 8.3:-88702 | MS.gene042039:CDS |
AAACAGATGTAATTGTGATT+GGG | 0.492966 | 8.3:-90730 | MS.gene042039:CDS |
CATCATCATAGTCATAGTAA+TGG | 0.495952 | 8.3:-90812 | MS.gene042039:CDS |
GTGGAGAGAGCAGTGGGACC+AGG | 0.499060 | 8.3:-88861 | MS.gene042039:CDS |
ATGGGAGGATTAGGAAAGGT+GGG | 0.499467 | 8.3:-90793 | MS.gene042039:CDS |
CAGCACCTCCAGCATGGTCG+TGG | 0.499748 | 8.3:+90636 | None:intergenic |
CGGAGGAACAGAGGAACATA+TGG | 0.499814 | 8.3:-88774 | MS.gene042039:CDS |
AGTCCTTCCCACAACTCAAA+TGG | 0.501774 | 8.3:+89033 | None:intergenic |
CAATACCTGCAGCTCCATCA+AGG | 0.503593 | 8.3:+89649 | None:intergenic |
TCCCTTGTCTACAGCTGCAA+TGG | 0.505505 | 8.3:-90339 | MS.gene042039:CDS |
AGAAATCAGCTTCAGGTACA+TGG | 0.506854 | 8.3:+90459 | None:intergenic |
CTCCTAATCTGGCACCTACT+GGG | 0.508705 | 8.3:-89092 | MS.gene042039:CDS |
GCTTCTCAGCTTCACTCCAA+TGG | 0.509152 | 8.3:+89536 | None:intergenic |
CCTCAGCATCAAATCCCAAA+TGG | 0.511011 | 8.3:+89299 | None:intergenic |
CCATGAATCATAAGTAGCGC+AGG | 0.513899 | 8.3:+90487 | None:intergenic |
GACGCCAATGCCAGGAAAAG+TGG | 0.514468 | 8.3:+88674 | None:intergenic |
TAGTATATTGTCTGCAGAGA+TGG | 0.518916 | 8.3:-90084 | MS.gene042039:intron |
TTCCCAGTAGGTGCCAGATT+AGG | 0.527245 | 8.3:+89090 | None:intergenic |
ACCAGAGAATAATGATGGAC+CGG | 0.531175 | 8.3:+90577 | None:intergenic |
GAACTGAACCATTTGAGTTG+TGG | 0.531241 | 8.3:-89041 | MS.gene042039:CDS |
ATTAGCTACAATTGCACCAC+TGG | 0.535074 | 8.3:+88638 | None:intergenic |
GACTTTGGAACAACTTCTTG+AGG | 0.536940 | 8.3:+89373 | None:intergenic |
GTCCTGAAGCTGTTCAAGAA+TGG | 0.537122 | 8.3:-90385 | MS.gene042039:CDS |
TCAATCCAATTGCGTATGAA+AGG | 0.537955 | 8.3:+90143 | None:intergenic |
TGCAAACCAGAGAATAATGA+TGG | 0.543994 | 8.3:+90572 | None:intergenic |
TTCGAAAGCCACGACCATGC+TGG | 0.544052 | 8.3:-90644 | MS.gene042039:CDS |
TTCTCTGGTTTGCAGTCAAG+AGG | 0.544317 | 8.3:-90563 | MS.gene042039:CDS |
AAGGACCTTCACAACTATGC+AGG | 0.545742 | 8.3:-90407 | MS.gene042039:CDS |
CGCTACTTATGATTCATGGA+TGG | 0.556127 | 8.3:-90483 | MS.gene042039:CDS |
GTCCCTGCAGTTGCTGCCAG+TGG | 0.557851 | 8.3:-88654 | MS.gene042039:CDS |
AGCCATTGCAGCTGTAGACA+AGG | 0.561564 | 8.3:+90337 | None:intergenic |
AATACCTGCAGCTCCATCAA+GGG | 0.564396 | 8.3:+89650 | None:intergenic |
TCCAATTGCATCAAGCAGCT+GGG | 0.566641 | 8.3:+88590 | None:intergenic |
GTGATTGGGAGTGGTATTGG+TGG | 0.570399 | 8.3:-90716 | MS.gene042039:CDS |
GCATCAAGAACTTGAGCAAG+AGG | 0.572179 | 8.3:+90527 | None:intergenic |
GTTGAAAATGACAGAGCCAT+TGG | 0.574831 | 8.3:-89552 | MS.gene042039:CDS |
CCATTTGGGATTTGATGCTG+AGG | 0.576837 | 8.3:-89299 | MS.gene042039:intron |
TTTGCAGTCAAGAGGTCCAC+AGG | 0.577098 | 8.3:-90555 | MS.gene042039:CDS |
CACATCAAAGGTTTCTTCGG+AGG | 0.578196 | 8.3:-88791 | MS.gene042039:CDS |
CAGGACCTGCATAGTTGTGA+AGG | 0.579792 | 8.3:+90402 | None:intergenic |
AGAGCAGTGGAGAGAGCAGT+GGG | 0.579813 | 8.3:-88867 | MS.gene042039:CDS |
GAAGTCCACTCACACATCAA+AGG | 0.579934 | 8.3:-88803 | MS.gene042039:CDS |
GCAGTTCGTACATGCCAAGA+AGG | 0.580617 | 8.3:-89440 | MS.gene042039:intron |
GAGAGCAGTGGAGAGAGCAG+TGG | 0.581460 | 8.3:-88868 | MS.gene042039:CDS |
ATCATAAGTAGCGCAGGGGA+CGG | 0.583077 | 8.3:+90493 | None:intergenic |
ACTGAGTTGTGCAGCACTGT+TGG | 0.584888 | 8.3:-90693 | MS.gene042039:CDS |
AATGGGAGGATTAGGAAAGG+TGG | 0.589689 | 8.3:-90794 | MS.gene042039:CDS |
GCCATTGCAGCTGTAGACAA+GGG | 0.590322 | 8.3:+90338 | None:intergenic |
CGAGGACTAGAGAAGTTTGG+TGG | 0.591605 | 8.3:-89612 | MS.gene042039:CDS |
CAAACAACAAATAGATAATG+TGG | 0.592493 | 8.3:-88890 | MS.gene042039:intron |
GATGTAATTGTGATTGGGAG+TGG | 0.593011 | 8.3:-90725 | MS.gene042039:CDS |
AATCTCCTCGAACAGATAGA+GGG | 0.593766 | 8.3:+90309 | None:intergenic |
AGATTAGGAGTAAGTACACT+AGG | 0.595451 | 8.3:+89105 | None:intergenic |
GCTGATTTCTTGTCACGCAT+AGG | 0.597690 | 8.3:-90446 | MS.gene042039:CDS |
CACCACTGGCAGCAACTGCA+GGG | 0.605933 | 8.3:+88652 | None:intergenic |
TGGAGTTGAATGTCCAGGAA+AGG | 0.606615 | 8.3:+88725 | None:intergenic |
CATGAATCATAAGTAGCGCA+GGG | 0.607675 | 8.3:+90488 | None:intergenic |
GAACCATTTGAGTTGTGGGA+AGG | 0.609081 | 8.3:-89036 | MS.gene042039:CDS |
TTTGCAGAATGGTACAAACC+AGG | 0.612324 | 8.3:-89690 | MS.gene042039:CDS |
TATGGACCAGCTATACAAGC+TGG | 0.613740 | 8.3:-88756 | MS.gene042039:CDS |
TTGCAGAATGGTACAAACCA+GGG | 0.620272 | 8.3:-89689 | MS.gene042039:CDS |
ATAGATAATGTGGAGAGCAG+TGG | 0.622582 | 8.3:-88880 | MS.gene042039:intron |
GGAATTGGAGTTGAATGTCC+AGG | 0.624562 | 8.3:+88720 | None:intergenic |
AGTAATGGGAGGATTAGGAA+AGG | 0.625364 | 8.3:-90797 | MS.gene042039:CDS |
AGGTTTCTTCGGAGGAACAG+AGG | 0.626999 | 8.3:-88783 | MS.gene042039:CDS |
GACTAGAGAAGTTTGGTGGG+CGG | 0.629357 | 8.3:-89608 | MS.gene042039:CDS |
ATTGTTGATGCTCTTGTACG+AGG | 0.629566 | 8.3:-89630 | MS.gene042039:CDS |
CATCAAGAACTTGAGCAAGA+GGG | 0.633604 | 8.3:+90528 | None:intergenic |
ATTGGAGTGAAGCTGAGAAG+CGG | 0.638801 | 8.3:-89534 | MS.gene042039:CDS |
AATGAGCAGCACCTCCAGCA+TGG | 0.642493 | 8.3:+90630 | None:intergenic |
ATACCTGCAGCTCCATCAAG+GGG | 0.643456 | 8.3:+89651 | None:intergenic |
TCTTAAAGCTCAAAGATCAG+AGG | 0.643901 | 8.3:-88983 | MS.gene042039:intron |
TGCAGAATGGTACAAACCAG+GGG | 0.644445 | 8.3:-89688 | MS.gene042039:CDS |
ATCTCCTCGAACAGATAGAG+GGG | 0.646167 | 8.3:+90310 | None:intergenic |
ATCATAGTCATAGTAATGGG+AGG | 0.651087 | 8.3:-90808 | MS.gene042039:CDS |
AAAAGGTGAGAGAAGTTGTG+TGG | 0.652152 | 8.3:+90199 | None:intergenic |
TGTAACACATGTTTCCCAGT+AGG | 0.652977 | 8.3:+89078 | None:intergenic |
TGAGCAAGAGGGTTAGCCTG+TGG | 0.654171 | 8.3:+90539 | None:intergenic |
GATTTCTCTTCAAAGTCACG+TGG | 0.656256 | 8.3:-89586 | MS.gene042039:CDS |
GAGGACTAGAGAAGTTTGGT+GGG | 0.661720 | 8.3:-89611 | MS.gene042039:CDS |
TCTCCACAACAATAAAGGTG+TGG | 0.665845 | 8.3:+88699 | None:intergenic |
AGAAACCTTTGATGTGTGAG+TGG | 0.673422 | 8.3:+88798 | None:intergenic |
AGGTGCATATCTAGCAGCAG+CGG | 0.676346 | 8.3:+90271 | None:intergenic |
GAAAGCCACGACCATGCTGG+AGG | 0.682926 | 8.3:-90641 | MS.gene042039:CDS |
TGGGAGGATTAGGAAAGGTG+GGG | 0.683293 | 8.3:-90792 | MS.gene042039:CDS |
AGTGGGACCAGGATTCAGCA+GGG | 0.693423 | 8.3:-88850 | MS.gene042039:CDS |
TGTGAGCAATGCATCAATGT+GGG | 0.699079 | 8.3:-89413 | MS.gene042039:CDS |
TTGTGAGCAATGCATCAATG+TGG | 0.700183 | 8.3:-89414 | MS.gene042039:CDS |
TCTCCTCGAACAGATAGAGG+GGG | 0.703760 | 8.3:+90311 | None:intergenic |
GTGGAACGAAGAGCAGCCTG+AGG | 0.714071 | 8.3:+90218 | None:intergenic |
ATGAATCATAAGTAGCGCAG+GGG | 0.721253 | 8.3:+90489 | None:intergenic |
GCAGAATGGTACAAACCAGG+GGG | 0.746992 | 8.3:-89687 | MS.gene042039:CDS |
TACCTGCAGCTCCATCAAGG+GGG | 0.749948 | 8.3:+89652 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAAATTAATATACTTACT+TGG | + | chr8.3:89945-89964 | None:intergenic | 15.0% |
!!! | TGATTTTTAAGAAATGAAAT+TGG | + | chr8.3:89616-89635 | None:intergenic | 15.0% |
!! | ATCATATAGTTGTAAATGAT+TGG | - | chr8.3:90280-90299 | MS.gene042039:CDS | 20.0% |
!! | TCATATAGTTGTAAATGATT+GGG | - | chr8.3:90281-90300 | MS.gene042039:CDS | 20.0% |
! | AAACAGATGTAATTGTGATT+GGG | - | chr8.3:88723-88742 | MS.gene042039:CDS | 25.0% |
! | ATCATCATAGTCATAGTAAT+GGG | - | chr8.3:88642-88661 | MS.gene042039:CDS | 25.0% |
! | CAAACAACAAATAGATAATG+TGG | - | chr8.3:90563-90582 | MS.gene042039:CDS | 25.0% |
!! | TTCAATACCTTTTTCCAAAT+GGG | - | chr8.3:89211-89230 | MS.gene042039:intron | 25.0% |
!! | TTTCAATACCTTTTTCCAAA+TGG | - | chr8.3:89210-89229 | MS.gene042039:intron | 25.0% |
!!! | AAAAAGGTATTGAAAAGAGA+AGG | + | chr8.3:89205-89224 | None:intergenic | 25.0% |
!!! | AGCTTTAAGATTTCTGTATT+CGG | + | chr8.3:90460-90479 | None:intergenic | 25.0% |
AAAGGCTATAAGTTTGATTC+CGG | - | chr8.3:88857-88876 | MS.gene042039:CDS | 30.0% | |
AAATGTGAAGTGAAGTTAGT+TGG | - | chr8.3:90628-90647 | MS.gene042039:CDS | 30.0% | |
AGGATAGAAACTAGTTATTG+TGG | + | chr8.3:89476-89495 | None:intergenic | 30.0% | |
ATCCTATTTGAGTAAGACTT+TGG | + | chr8.3:90098-90117 | None:intergenic | 30.0% | |
CATCATCATAGTCATAGTAA+TGG | - | chr8.3:88641-88660 | MS.gene042039:CDS | 30.0% | |
GAAACAGATGTAATTGTGAT+TGG | - | chr8.3:88722-88741 | MS.gene042039:CDS | 30.0% | |
GCATAACACAAATCTCTAAA+GGG | - | chr8.3:89533-89552 | MS.gene042039:CDS | 30.0% | |
TGCATAACACAAATCTCTAA+AGG | - | chr8.3:89532-89551 | MS.gene042039:CDS | 30.0% | |
TTCCAAAGTCTTACTCAAAT+AGG | - | chr8.3:90093-90112 | MS.gene042039:CDS | 30.0% | |
TTGCAAAGAGTCAAGTATTT+GGG | + | chr8.3:89281-89300 | None:intergenic | 30.0% | |
ACCTAAAAGCAGCAGTTAAA+TGG | - | chr8.3:89635-89654 | MS.gene042039:CDS | 35.0% | |
AGAATCCTTTCATACGCAAT+TGG | - | chr8.3:89305-89324 | MS.gene042039:CDS | 35.0% | |
AGATTAGGAGTAAGTACACT+AGG | + | chr8.3:90351-90370 | None:intergenic | 35.0% | |
AGGTTTACATGTTTGCAGAA+TGG | - | chr8.3:89752-89771 | MS.gene042039:intron | 35.0% | |
ATCTTTCATGCATCTCCATT+TGG | - | chr8.3:90139-90158 | MS.gene042039:CDS | 35.0% | |
ATTCCACACCTTTATTGTTG+TGG | - | chr8.3:90751-90770 | MS.gene042039:CDS | 35.0% | |
CTCACTCTCATTACATTACA+AGG | + | chr8.3:88593-88612 | None:intergenic | 35.0% | |
GAAAACTAACGAAATAGTGC+TGG | - | chr8.3:89661-89680 | MS.gene042039:CDS | 35.0% | |
GAATACTTCAAACAGATGCA+TGG | + | chr8.3:90219-90238 | None:intergenic | 35.0% | |
GAGTCAAGTATTTGGGAAAA+AGG | + | chr8.3:89274-89293 | None:intergenic | 35.0% | |
GTTGCAAAGAGTCAAGTATT+TGG | + | chr8.3:89282-89301 | None:intergenic | 35.0% | |
GTTGTAAATGATTGGGAAAG+AGG | - | chr8.3:90288-90307 | MS.gene042039:CDS | 35.0% | |
TAGTATATTGTCTGCAGAGA+TGG | - | chr8.3:89369-89388 | MS.gene042039:CDS | 35.0% | |
TAGTGTACTTACTCCTAATC+TGG | - | chr8.3:90350-90369 | MS.gene042039:CDS | 35.0% | |
TCAATCCAATTGCGTATGAA+AGG | + | chr8.3:89313-89332 | None:intergenic | 35.0% | |
TCACACATCAAAGGTTTCTT+CGG | - | chr8.3:90659-90678 | MS.gene042039:CDS | 35.0% | |
TCTGCACAAAAAAATGAGAG+AGG | + | chr8.3:89496-89515 | None:intergenic | 35.0% | |
TCTTAAAGCTCAAAGATCAG+AGG | - | chr8.3:90470-90489 | MS.gene042039:CDS | 35.0% | |
TCTTTCATGCATCTCCATTT+GGG | - | chr8.3:90140-90159 | MS.gene042039:CDS | 35.0% | |
TGCAAACCAGAGAATAATGA+TGG | + | chr8.3:88884-88903 | None:intergenic | 35.0% | |
TTACTTTCTTTCTTGCTTGC+TGG | - | chr8.3:89334-89353 | MS.gene042039:CDS | 35.0% | |
! | AGGTCCTACTGAGTTTTTAA+AGG | - | chr8.3:89027-89046 | MS.gene042039:CDS | 35.0% |
! | AGGTCCTTTAAAAACTCAGT+AGG | + | chr8.3:89034-89053 | None:intergenic | 35.0% |
! | ATCATAGTCATAGTAATGGG+AGG | - | chr8.3:88645-88664 | MS.gene042039:CDS | 35.0% |
! | CAACAATAAAGGTGTGGAAT+TGG | + | chr8.3:90751-90770 | None:intergenic | 35.0% |
! | GATTCCTGTTGTTTACTTAG+AGG | - | chr8.3:89572-89591 | MS.gene042039:CDS | 35.0% |
! | GCTCATTCTTTTGATGTCAA+AGG | - | chr8.3:88839-88858 | MS.gene042039:CDS | 35.0% |
!! | AACTGAACCATTTGAGTTGT+GGG | - | chr8.3:90413-90432 | MS.gene042039:CDS | 35.0% |
!! | ACTTTGGAACAACTTCTTGA+GGG | + | chr8.3:90082-90101 | None:intergenic | 35.0% |
!!! | TCCATTTAACTGCTGCTTTT+AGG | + | chr8.3:89639-89658 | None:intergenic | 35.0% |
AAAAGGTGAGAGAAGTTGTG+TGG | + | chr8.3:89257-89276 | None:intergenic | 40.0% | |
AAACATGTAAACCTGAGGGA+AGG | + | chr8.3:89746-89765 | None:intergenic | 40.0% | |
AAATCTCCTCGAACAGATAG+AGG | + | chr8.3:89148-89167 | None:intergenic | 40.0% | |
AACATGTAAACCTGAGGGAA+GGG | + | chr8.3:89745-89764 | None:intergenic | 40.0% | |
AACTCAAATGGTTCAGTTCC+TGG | + | chr8.3:90411-90430 | None:intergenic | 40.0% | |
AATCTCCTCGAACAGATAGA+GGG | + | chr8.3:89147-89166 | None:intergenic | 40.0% | |
ACTGCCTCTAAGTAAACAAC+AGG | + | chr8.3:89579-89598 | None:intergenic | 40.0% | |
AGAAACCTTTGATGTGTGAG+TGG | + | chr8.3:90658-90677 | None:intergenic | 40.0% | |
AGAAATCAGCTTCAGGTACA+TGG | + | chr8.3:88997-89016 | None:intergenic | 40.0% | |
ATAGATAATGTGGAGAGCAG+TGG | - | chr8.3:90573-90592 | MS.gene042039:CDS | 40.0% | |
ATGAATCATAAGTAGCGCAG+GGG | + | chr8.3:88967-88986 | None:intergenic | 40.0% | |
ATTAGCTACAATTGCACCAC+TGG | + | chr8.3:90818-90837 | None:intergenic | 40.0% | |
ATTGTGATTGGGAGTGGTAT+TGG | - | chr8.3:88734-88753 | MS.gene042039:CDS | 40.0% | |
ATTGTTGATGCTCTTGTACG+AGG | - | chr8.3:89823-89842 | MS.gene042039:intron | 40.0% | |
CATCAAGAACTTGAGCAAGA+GGG | + | chr8.3:88928-88947 | None:intergenic | 40.0% | |
CATGAATCATAAGTAGCGCA+GGG | + | chr8.3:88968-88987 | None:intergenic | 40.0% | |
CGCTACTTATGATTCATGGA+TGG | - | chr8.3:88970-88989 | MS.gene042039:intron | 40.0% | |
CTATCTGTTCGAGGAGATTT+CGG | - | chr8.3:89148-89167 | MS.gene042039:CDS | 40.0% | |
CTGCAAACATGTAAACCTGA+GGG | + | chr8.3:89750-89769 | None:intergenic | 40.0% | |
GATGTAATTGTGATTGGGAG+TGG | - | chr8.3:88728-88747 | MS.gene042039:CDS | 40.0% | |
GATTTCTCTTCAAAGTCACG+TGG | - | chr8.3:89867-89886 | MS.gene042039:intron | 40.0% | |
GCTCAAGTTCTTGATGCTTT+GGG | - | chr8.3:88932-88951 | MS.gene042039:intron | 40.0% | |
GTGTTACATGCTTATCTTCC+AGG | - | chr8.3:90390-90409 | MS.gene042039:CDS | 40.0% | |
GTTGAAAATGACAGAGCCAT+TGG | - | chr8.3:89901-89920 | MS.gene042039:intron | 40.0% | |
TATTCAACATCGAGTGAGCA+GGG | - | chr8.3:90234-90253 | MS.gene042039:CDS | 40.0% | |
TCTCCACAACAATAAAGGTG+TGG | + | chr8.3:90757-90776 | None:intergenic | 40.0% | |
TCTGCAAACATGTAAACCTG+AGG | + | chr8.3:89751-89770 | None:intergenic | 40.0% | |
TGCTCAAGTTCTTGATGCTT+TGG | - | chr8.3:88931-88950 | MS.gene042039:intron | 40.0% | |
TGGAGTCTCCACAACAATAA+AGG | + | chr8.3:90762-90781 | None:intergenic | 40.0% | |
TGTAACACATGTTTCCCAGT+AGG | + | chr8.3:90378-90397 | None:intergenic | 40.0% | |
TGTGAGCAATGCATCAATGT+GGG | - | chr8.3:90040-90059 | MS.gene042039:intron | 40.0% | |
TTGCAGAATGGTACAAACCA+GGG | - | chr8.3:89764-89783 | MS.gene042039:intron | 40.0% | |
TTGTGAGCAATGCATCAATG+TGG | - | chr8.3:90039-90058 | MS.gene042039:intron | 40.0% | |
TTTGCAGAATGGTACAAACC+AGG | - | chr8.3:89763-89782 | MS.gene042039:intron | 40.0% | |
! | AATGATTGCACGTTGATGAG+TGG | + | chr8.3:89427-89446 | None:intergenic | 40.0% |
! | AGTAATGGGAGGATTAGGAA+AGG | - | chr8.3:88656-88675 | MS.gene042039:CDS | 40.0% |
! | GTCATAGTAATGGGAGGATT+AGG | - | chr8.3:88651-88670 | MS.gene042039:CDS | 40.0% |
! | TCAAGAATGGCAGAAGCTTT+TGG | - | chr8.3:89081-89100 | MS.gene042039:CDS | 40.0% |
!! | ACCAGAGAATAATGATGGAC+CGG | + | chr8.3:88879-88898 | None:intergenic | 40.0% |
!! | GAACTGAACCATTTGAGTTG+TGG | - | chr8.3:90412-90431 | MS.gene042039:CDS | 40.0% |
!! | GACTTTGGAACAACTTCTTG+AGG | + | chr8.3:90083-90102 | None:intergenic | 40.0% |
!! | TGATGAGTGGTAATGGCAAT+TGG | + | chr8.3:89414-89433 | None:intergenic | 40.0% |
AAGGACCTTCACAACTATGC+AGG | - | chr8.3:89046-89065 | MS.gene042039:CDS | 45.0% | |
AATACCTGCAGCTCCATCAA+GGG | + | chr8.3:89806-89825 | None:intergenic | 45.0% | |
AATGGGAGGATTAGGAAAGG+TGG | - | chr8.3:88659-88678 | MS.gene042039:CDS | 45.0% | |
AGTCCTTCCCACAACTCAAA+TGG | + | chr8.3:90423-90442 | None:intergenic | 45.0% | |
ATCTCCTCGAACAGATAGAG+GGG | + | chr8.3:89146-89165 | None:intergenic | 45.0% | |
ATGGGAGGATTAGGAAAGGT+GGG | - | chr8.3:88660-88679 | MS.gene042039:CDS | 45.0% | |
ATTGCTCACAACAGCCTTCT+TGG | + | chr8.3:90030-90049 | None:intergenic | 45.0% | |
ATTGGAGTGAAGCTGAGAAG+CGG | - | chr8.3:89919-89938 | MS.gene042039:intron | 45.0% | |
CACATCAAAGGTTTCTTCGG+AGG | - | chr8.3:90662-90681 | MS.gene042039:CDS | 45.0% | |
CCATGAATCATAAGTAGCGC+AGG | + | chr8.3:88969-88988 | None:intergenic | 45.0% | |
CCTCAGCATCAAATCCCAAA+TGG | + | chr8.3:90157-90176 | None:intergenic | 45.0% | |
CCTGCGCTACTTATGATTCA+TGG | - | chr8.3:88966-88985 | MS.gene042039:intron | 45.0% | |
CGTGACAAGAAATCAGCTTC+AGG | + | chr8.3:89004-89023 | None:intergenic | 45.0% | |
CTGAGGACCCATTTGGAAAA+AGG | + | chr8.3:89221-89240 | None:intergenic | 45.0% | |
GAAGTCCACTCACACATCAA+AGG | - | chr8.3:90650-90669 | MS.gene042039:CDS | 45.0% | |
GAGGACTAGAGAAGTTTGGT+GGG | - | chr8.3:89842-89861 | MS.gene042039:intron | 45.0% | |
GCATCAAGAACTTGAGCAAG+AGG | + | chr8.3:88929-88948 | None:intergenic | 45.0% | |
GGAATTGGAGTTGAATGTCC+AGG | + | chr8.3:90736-90755 | None:intergenic | 45.0% | |
GTACGAGGACTAGAGAAGTT+TGG | - | chr8.3:89838-89857 | MS.gene042039:intron | 45.0% | |
GTATTCAACATCGAGTGAGC+AGG | - | chr8.3:90233-90252 | MS.gene042039:CDS | 45.0% | |
GTCCTGAAGCTGTTCAAGAA+TGG | - | chr8.3:89068-89087 | MS.gene042039:CDS | 45.0% | |
TATGGACCAGCTATACAAGC+TGG | - | chr8.3:90697-90716 | MS.gene042039:CDS | 45.0% | |
TCCAATTGCATCAAGCAGCT+GGG | + | chr8.3:90866-90885 | None:intergenic | 45.0% | |
TCCGGTCCATCATTATTCTC+TGG | - | chr8.3:88875-88894 | MS.gene042039:CDS | 45.0% | |
TCTGTACCAGCTTGTATAGC+TGG | + | chr8.3:90706-90725 | None:intergenic | 45.0% | |
TGCAGAATGGTACAAACCAG+GGG | - | chr8.3:89765-89784 | MS.gene042039:intron | 45.0% | |
TGCCATTCTTGAACAGCTTC+AGG | + | chr8.3:89073-89092 | None:intergenic | 45.0% | |
TGGAGTTGAATGTCCAGGAA+AGG | + | chr8.3:90731-90750 | None:intergenic | 45.0% | |
TTCCAATTGCATCAAGCAGC+TGG | + | chr8.3:90867-90886 | None:intergenic | 45.0% | |
! | CCATTTGGGATTTGATGCTG+AGG | - | chr8.3:90154-90173 | MS.gene042039:CDS | 45.0% |
! | CTTTTTCCAAATGGGTCCTC+AGG | - | chr8.3:89219-89238 | MS.gene042039:intron | 45.0% |
! | GCTGATTTCTTGTCACGCAT+AGG | - | chr8.3:89007-89026 | MS.gene042039:CDS | 45.0% |
! | TGCACGTTGATGAGTGGTAA+TGG | + | chr8.3:89421-89440 | None:intergenic | 45.0% |
! | TTCTCTGGTTTGCAGTCAAG+AGG | - | chr8.3:88890-88909 | MS.gene042039:intron | 45.0% |
! | TTGATGCTGAGGTGAGGTTT+TGG | - | chr8.3:90165-90184 | MS.gene042039:CDS | 45.0% |
!! | GAACCATTTGAGTTGTGGGA+AGG | - | chr8.3:90417-90436 | MS.gene042039:CDS | 45.0% |
ACTCCTAATCTGGCACCTAC+TGG | - | chr8.3:90360-90379 | MS.gene042039:CDS | 50.0% | |
ACTGAGTTGTGCAGCACTGT+TGG | - | chr8.3:88760-88779 | MS.gene042039:CDS | 50.0% | |
AGCCATTGCAGCTGTAGACA+AGG | + | chr8.3:89119-89138 | None:intergenic | 50.0% | |
AGGTGCATATCTAGCAGCAG+CGG | + | chr8.3:89185-89204 | None:intergenic | 50.0% | |
AGGTTTCTTCGGAGGAACAG+AGG | - | chr8.3:90670-90689 | MS.gene042039:CDS | 50.0% | |
ATACCTGCAGCTCCATCAAG+GGG | + | chr8.3:89805-89824 | None:intergenic | 50.0% | |
ATCATAAGTAGCGCAGGGGA+CGG | + | chr8.3:88963-88982 | None:intergenic | 50.0% | |
CAATACCTGCAGCTCCATCA+AGG | + | chr8.3:89807-89826 | None:intergenic | 50.0% | |
CAGGACCTGCATAGTTGTGA+AGG | + | chr8.3:89054-89073 | None:intergenic | 50.0% | |
CAGGGTATACGCAGCAATCT+AGG | - | chr8.3:90252-90271 | MS.gene042039:CDS | 50.0% | |
CATTTCTCCCTGCTGAATCC+TGG | + | chr8.3:90613-90632 | None:intergenic | 50.0% | |
CGAGGACTAGAGAAGTTTGG+TGG | - | chr8.3:89841-89860 | MS.gene042039:intron | 50.0% | |
CGGAGGAACAGAGGAACATA+TGG | - | chr8.3:90679-90698 | MS.gene042039:CDS | 50.0% | |
CTCCTAATCTGGCACCTACT+GGG | - | chr8.3:90361-90380 | MS.gene042039:CDS | 50.0% | |
GATTAGGAAAGGTGGGGTTG+TGG | - | chr8.3:88667-88686 | MS.gene042039:CDS | 50.0% | |
GCAGAATGGTACAAACCAGG+GGG | - | chr8.3:89766-89785 | MS.gene042039:intron | 50.0% | |
GCAGTTCGTACATGCCAAGA+AGG | - | chr8.3:90013-90032 | MS.gene042039:intron | 50.0% | |
GCCATTGCAGCTGTAGACAA+GGG | + | chr8.3:89118-89137 | None:intergenic | 50.0% | |
GCTGGTACAGATACCTTTCC+TGG | - | chr8.3:90715-90734 | MS.gene042039:CDS | 50.0% | |
GCTTCTCAGCTTCACTCCAA+TGG | + | chr8.3:89920-89939 | None:intergenic | 50.0% | |
TCCCAGCTGCTTGATGCAAT+TGG | - | chr8.3:90862-90881 | MS.gene042039:CDS | 50.0% | |
TCCCTTGTCTACAGCTGCAA+TGG | - | chr8.3:89114-89133 | MS.gene042039:CDS | 50.0% | |
TCTCCTCGAACAGATAGAGG+GGG | + | chr8.3:89145-89164 | None:intergenic | 50.0% | |
TGGGAGGATTAGGAAAGGTG+GGG | - | chr8.3:88661-88680 | MS.gene042039:CDS | 50.0% | |
TGGGATTTGATGCTGAGGTG+AGG | - | chr8.3:90159-90178 | MS.gene042039:CDS | 50.0% | |
TGTCTTGAGTACCCCCTTGA+TGG | - | chr8.3:89790-89809 | MS.gene042039:intron | 50.0% | |
TTCCCAGTAGGTGCCAGATT+AGG | + | chr8.3:90366-90385 | None:intergenic | 50.0% | |
TTTGCAGTCAAGAGGTCCAC+AGG | - | chr8.3:88898-88917 | MS.gene042039:intron | 50.0% | |
! | GACTAGAGAAGTTTGGTGGG+CGG | - | chr8.3:89845-89864 | MS.gene042039:intron | 50.0% |
! | GTGATTGGGAGTGGTATTGG+TGG | - | chr8.3:88737-88756 | MS.gene042039:CDS | 50.0% |
!! | GACTCCACTTTTCCTGGCAT+TGG | - | chr8.3:90775-90794 | MS.gene042039:CDS | 50.0% |
!! | TGTGGAGACTCCACTTTTCC+TGG | - | chr8.3:90769-90788 | MS.gene042039:CDS | 50.0% |
AATGAGCAGCACCTCCAGCA+TGG | + | chr8.3:88826-88845 | None:intergenic | 55.0% | |
AGAGCAGTGGAGAGAGCAGT+GGG | - | chr8.3:90586-90605 | MS.gene042039:CDS | 55.0% | |
AGTGGGACCAGGATTCAGCA+GGG | - | chr8.3:90603-90622 | MS.gene042039:CDS | 55.0% | |
CTTCCCCCTCTATCTGTTCG+AGG | - | chr8.3:89139-89158 | MS.gene042039:CDS | 55.0% | |
GACGCCAATGCCAGGAAAAG+TGG | + | chr8.3:90782-90801 | None:intergenic | 55.0% | |
TACCTGCAGCTCCATCAAGG+GGG | + | chr8.3:89804-89823 | None:intergenic | 55.0% | |
TTCGAAAGCCACGACCATGC+TGG | - | chr8.3:88809-88828 | MS.gene042039:CDS | 55.0% | |
!! | TGAGCAAGAGGGTTAGCCTG+TGG | + | chr8.3:88917-88936 | None:intergenic | 55.0% |
CACCACTGGCAGCAACTGCA+GGG | + | chr8.3:90804-90823 | None:intergenic | 60.0% | |
CAGTGGGACCAGGATTCAGC+AGG | - | chr8.3:90602-90621 | MS.gene042039:CDS | 60.0% | |
CAGTTGCTCTCCCTTCCCTC+AGG | - | chr8.3:89732-89751 | MS.gene042039:intron | 60.0% | |
GAAAGCCACGACCATGCTGG+AGG | - | chr8.3:88812-88831 | MS.gene042039:CDS | 60.0% | |
GAGAGCAGTGGAGAGAGCAG+TGG | - | chr8.3:90585-90604 | MS.gene042039:CDS | 60.0% | |
GAGCAGCCTGAGGACCCATT+TGG | + | chr8.3:89228-89247 | None:intergenic | 60.0% | |
GTGGAACGAAGAGCAGCCTG+AGG | + | chr8.3:89238-89257 | None:intergenic | 60.0% | |
TACCCCCTTGATGGAGCTGC+AGG | - | chr8.3:89799-89818 | MS.gene042039:intron | 60.0% | |
ACTGCAGGGACGCCAATGCC+AGG | + | chr8.3:90790-90809 | None:intergenic | 65.0% | |
CAGCACCTCCAGCATGGTCG+TGG | + | chr8.3:88820-88839 | None:intergenic | 65.0% | |
GCACCACTGGCAGCAACTGC+AGG | + | chr8.3:90805-90824 | None:intergenic | 65.0% | |
GGGTACTCAAGACAGCCCCC+TGG | + | chr8.3:89784-89803 | None:intergenic | 65.0% | |
GTCCCTGCAGTTGCTGCCAG+TGG | - | chr8.3:90799-90818 | MS.gene042039:CDS | 65.0% | |
GTGGAGAGAGCAGTGGGACC+AGG | - | chr8.3:90592-90611 | MS.gene042039:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 88584 | 90891 | 88584 | ID=MS.gene042039 |
chr8.3 | mRNA | 88584 | 90891 | 88584 | ID=MS.gene042039.t1;Parent=MS.gene042039 |
chr8.3 | exon | 90085 | 90891 | 90085 | ID=MS.gene042039.t1.exon1;Parent=MS.gene042039.t1 |
chr8.3 | CDS | 90085 | 90891 | 90085 | ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1 |
chr8.3 | exon | 89530 | 89721 | 89530 | ID=MS.gene042039.t1.exon2;Parent=MS.gene042039.t1 |
chr8.3 | CDS | 89530 | 89721 | 89530 | ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1 |
chr8.3 | exon | 89300 | 89458 | 89300 | ID=MS.gene042039.t1.exon3;Parent=MS.gene042039.t1 |
chr8.3 | CDS | 89300 | 89458 | 89300 | ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1 |
chr8.3 | exon | 88984 | 89220 | 88984 | ID=MS.gene042039.t1.exon4;Parent=MS.gene042039.t1 |
chr8.3 | CDS | 88984 | 89220 | 88984 | ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1 |
chr8.3 | exon | 88584 | 88898 | 88584 | ID=MS.gene042039.t1.exon5;Parent=MS.gene042039.t1 |
chr8.3 | CDS | 88584 | 88898 | 88584 | ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1 |
Gene Sequence |
Protein sequence |