AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042039


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042039.t1 MTR_4g134780 98.770 569 7 0 1 569 11 579 0.0 1165
MS.gene042039.t1 MTR_1g054965 31.504 565 320 21 23 556 42 570 1.70e-62 216
MS.gene042039.t1 MTR_1g054965 33.521 355 217 12 209 556 72 414 3.79e-50 179
MS.gene042039.t1 MTR_1g054965 29.000 500 292 19 23 494 42 506 3.04e-42 159
MS.gene042039.t1 MTR_1g054965 29.655 290 189 10 209 494 30 308 6.08e-30 120
MS.gene042039.t1 MTR_8g077580 24.483 580 331 26 30 540 4 545 6.10e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042039.t1 AT1G57770 80.762 525 101 0 45 569 50 574 0.0 899
MS.gene042039.t1 AT1G06820 31.569 529 311 16 45 556 75 569 1.13e-64 222
MS.gene042039.t1 AT1G06820 31.569 529 311 16 45 556 75 569 1.38e-64 222
MS.gene042039.t1 AT1G06820 33.898 354 217 9 209 556 108 450 1.79e-52 186
MS.gene042039.t1 AT1G06820 29.284 461 277 15 45 489 75 502 7.84e-44 164
MS.gene042039.t1 AT5G49555 22.968 566 343 26 37 540 3 537 5.68e-14 75.1

Find 146 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAAGAGTCAAGTATT+TGG 0.236602 8.3:+90174 None:intergenic
ATTGCTCACAACAGCCTTCT+TGG 0.241353 8.3:+89426 None:intergenic
TGCTCAAGTTCTTGATGCTT+TGG 0.242947 8.3:-90522 MS.gene042039:CDS
TCAAGAATGGCAGAAGCTTT+TGG 0.272982 8.3:-90372 MS.gene042039:CDS
TTACTTTCTTTCTTGCTTGC+TGG 0.273947 8.3:-90119 MS.gene042039:CDS
TGCCATTCTTGAACAGCTTC+AGG 0.275584 8.3:+90383 None:intergenic
GAGTCAAGTATTTGGGAAAA+AGG 0.286218 8.3:+90182 None:intergenic
GCTCAAGTTCTTGATGCTTT+GGG 0.288521 8.3:-90521 MS.gene042039:CDS
TTCCAAAGTCTTACTCAAAT+AGG 0.312564 8.3:-89360 MS.gene042039:CDS
ATCATATAGTTGTAAATGAT+TGG 0.312848 8.3:-89173 MS.gene042039:CDS
AACTCAAATGGTTCAGTTCC+TGG 0.320765 8.3:+89045 None:intergenic
ATCTTTCATGCATCTCCATT+TGG 0.323021 8.3:-89314 MS.gene042039:CDS
CTGAGGACCCATTTGGAAAA+AGG 0.326579 8.3:+90235 None:intergenic
GCTGGTACAGATACCTTTCC+TGG 0.338263 8.3:-88738 MS.gene042039:CDS
TTGCAAAGAGTCAAGTATTT+GGG 0.338675 8.3:+90175 None:intergenic
AGCTTTAAGATTTCTGTATT+CGG 0.338946 8.3:+88996 None:intergenic
CTATCTGTTCGAGGAGATTT+CGG 0.340613 8.3:-90305 MS.gene042039:CDS
GTGTTACATGCTTATCTTCC+AGG 0.349073 8.3:-89063 MS.gene042039:CDS
CAACAATAAAGGTGTGGAAT+TGG 0.355420 8.3:+88705 None:intergenic
TCTTTCATGCATCTCCATTT+GGG 0.358441 8.3:-89313 MS.gene042039:CDS
TCCCAGCTGCTTGATGCAAT+TGG 0.358531 8.3:-88591 MS.gene042039:CDS
CCTGCGCTACTTATGATTCA+TGG 0.371994 8.3:-90487 MS.gene042039:CDS
GAAACAGATGTAATTGTGAT+TGG 0.389065 8.3:-90731 MS.gene042039:CDS
ATCCTATTTGAGTAAGACTT+TGG 0.389095 8.3:+89358 None:intergenic
CTCACTCTCATTACATTACA+AGG 0.391228 8.3:+90863 None:intergenic
TGGAGTCTCCACAACAATAA+AGG 0.393345 8.3:+88694 None:intergenic
AGAATCCTTTCATACGCAAT+TGG 0.397759 8.3:-90148 MS.gene042039:CDS
ACTCCTAATCTGGCACCTAC+TGG 0.397996 8.3:-89093 MS.gene042039:CDS
TTCCAATTGCATCAAGCAGC+TGG 0.400845 8.3:+88589 None:intergenic
CATTTCTCCCTGCTGAATCC+TGG 0.401568 8.3:+88843 None:intergenic
TCATATAGTTGTAAATGATT+GGG 0.417919 8.3:-89172 MS.gene042039:CDS
TAGTGTACTTACTCCTAATC+TGG 0.419014 8.3:-89103 MS.gene042039:CDS
AACTGAACCATTTGAGTTGT+GGG 0.419173 8.3:-89040 MS.gene042039:CDS
TCCGGTCCATCATTATTCTC+TGG 0.421373 8.3:-90578 MS.gene042039:CDS
CAGGGTATACGCAGCAATCT+AGG 0.423282 8.3:-89201 MS.gene042039:CDS
ATTGTGATTGGGAGTGGTAT+TGG 0.424946 8.3:-90719 MS.gene042039:CDS
GTCATAGTAATGGGAGGATT+AGG 0.428264 8.3:-90802 MS.gene042039:CDS
GTTGTAAATGATTGGGAAAG+AGG 0.432129 8.3:-89165 MS.gene042039:CDS
GAGCAGCCTGAGGACCCATT+TGG 0.432543 8.3:+90228 None:intergenic
TCACACATCAAAGGTTTCTT+CGG 0.434054 8.3:-88794 MS.gene042039:CDS
GTACGAGGACTAGAGAAGTT+TGG 0.436491 8.3:-89615 MS.gene042039:CDS
ATCATCATAGTCATAGTAAT+GGG 0.437707 8.3:-90811 MS.gene042039:CDS
CGTGACAAGAAATCAGCTTC+AGG 0.438051 8.3:+90452 None:intergenic
AAATCTCCTCGAACAGATAG+AGG 0.446661 8.3:+90308 None:intergenic
ACTGCAGGGACGCCAATGCC+AGG 0.458440 8.3:+88666 None:intergenic
AAATGTGAAGTGAAGTTAGT+TGG 0.458953 8.3:-88825 MS.gene042039:CDS
ACTTTGGAACAACTTCTTGA+GGG 0.464503 8.3:+89374 None:intergenic
GCACCACTGGCAGCAACTGC+AGG 0.466053 8.3:+88651 None:intergenic
TCTGTACCAGCTTGTATAGC+TGG 0.473355 8.3:+88750 None:intergenic
CAGTGGGACCAGGATTCAGC+AGG 0.478022 8.3:-88851 MS.gene042039:CDS
AGGTTTACATGTTTGCAGAA+TGG 0.481167 8.3:-89701 MS.gene042039:CDS
AAAGGCTATAAGTTTGATTC+CGG 0.484501 8.3:-90596 MS.gene042039:CDS
GATTAGGAAAGGTGGGGTTG+TGG 0.485581 8.3:-90786 MS.gene042039:CDS
ATTCCACACCTTTATTGTTG+TGG 0.492890 8.3:-88702 MS.gene042039:CDS
AAACAGATGTAATTGTGATT+GGG 0.492966 8.3:-90730 MS.gene042039:CDS
CATCATCATAGTCATAGTAA+TGG 0.495952 8.3:-90812 MS.gene042039:CDS
GTGGAGAGAGCAGTGGGACC+AGG 0.499060 8.3:-88861 MS.gene042039:CDS
ATGGGAGGATTAGGAAAGGT+GGG 0.499467 8.3:-90793 MS.gene042039:CDS
CAGCACCTCCAGCATGGTCG+TGG 0.499748 8.3:+90636 None:intergenic
CGGAGGAACAGAGGAACATA+TGG 0.499814 8.3:-88774 MS.gene042039:CDS
AGTCCTTCCCACAACTCAAA+TGG 0.501774 8.3:+89033 None:intergenic
CAATACCTGCAGCTCCATCA+AGG 0.503593 8.3:+89649 None:intergenic
TCCCTTGTCTACAGCTGCAA+TGG 0.505505 8.3:-90339 MS.gene042039:CDS
AGAAATCAGCTTCAGGTACA+TGG 0.506854 8.3:+90459 None:intergenic
CTCCTAATCTGGCACCTACT+GGG 0.508705 8.3:-89092 MS.gene042039:CDS
GCTTCTCAGCTTCACTCCAA+TGG 0.509152 8.3:+89536 None:intergenic
CCTCAGCATCAAATCCCAAA+TGG 0.511011 8.3:+89299 None:intergenic
CCATGAATCATAAGTAGCGC+AGG 0.513899 8.3:+90487 None:intergenic
GACGCCAATGCCAGGAAAAG+TGG 0.514468 8.3:+88674 None:intergenic
TAGTATATTGTCTGCAGAGA+TGG 0.518916 8.3:-90084 MS.gene042039:intron
TTCCCAGTAGGTGCCAGATT+AGG 0.527245 8.3:+89090 None:intergenic
ACCAGAGAATAATGATGGAC+CGG 0.531175 8.3:+90577 None:intergenic
GAACTGAACCATTTGAGTTG+TGG 0.531241 8.3:-89041 MS.gene042039:CDS
ATTAGCTACAATTGCACCAC+TGG 0.535074 8.3:+88638 None:intergenic
GACTTTGGAACAACTTCTTG+AGG 0.536940 8.3:+89373 None:intergenic
GTCCTGAAGCTGTTCAAGAA+TGG 0.537122 8.3:-90385 MS.gene042039:CDS
TCAATCCAATTGCGTATGAA+AGG 0.537955 8.3:+90143 None:intergenic
TGCAAACCAGAGAATAATGA+TGG 0.543994 8.3:+90572 None:intergenic
TTCGAAAGCCACGACCATGC+TGG 0.544052 8.3:-90644 MS.gene042039:CDS
TTCTCTGGTTTGCAGTCAAG+AGG 0.544317 8.3:-90563 MS.gene042039:CDS
AAGGACCTTCACAACTATGC+AGG 0.545742 8.3:-90407 MS.gene042039:CDS
CGCTACTTATGATTCATGGA+TGG 0.556127 8.3:-90483 MS.gene042039:CDS
GTCCCTGCAGTTGCTGCCAG+TGG 0.557851 8.3:-88654 MS.gene042039:CDS
AGCCATTGCAGCTGTAGACA+AGG 0.561564 8.3:+90337 None:intergenic
AATACCTGCAGCTCCATCAA+GGG 0.564396 8.3:+89650 None:intergenic
TCCAATTGCATCAAGCAGCT+GGG 0.566641 8.3:+88590 None:intergenic
GTGATTGGGAGTGGTATTGG+TGG 0.570399 8.3:-90716 MS.gene042039:CDS
GCATCAAGAACTTGAGCAAG+AGG 0.572179 8.3:+90527 None:intergenic
GTTGAAAATGACAGAGCCAT+TGG 0.574831 8.3:-89552 MS.gene042039:CDS
CCATTTGGGATTTGATGCTG+AGG 0.576837 8.3:-89299 MS.gene042039:intron
TTTGCAGTCAAGAGGTCCAC+AGG 0.577098 8.3:-90555 MS.gene042039:CDS
CACATCAAAGGTTTCTTCGG+AGG 0.578196 8.3:-88791 MS.gene042039:CDS
CAGGACCTGCATAGTTGTGA+AGG 0.579792 8.3:+90402 None:intergenic
AGAGCAGTGGAGAGAGCAGT+GGG 0.579813 8.3:-88867 MS.gene042039:CDS
GAAGTCCACTCACACATCAA+AGG 0.579934 8.3:-88803 MS.gene042039:CDS
GCAGTTCGTACATGCCAAGA+AGG 0.580617 8.3:-89440 MS.gene042039:intron
GAGAGCAGTGGAGAGAGCAG+TGG 0.581460 8.3:-88868 MS.gene042039:CDS
ATCATAAGTAGCGCAGGGGA+CGG 0.583077 8.3:+90493 None:intergenic
ACTGAGTTGTGCAGCACTGT+TGG 0.584888 8.3:-90693 MS.gene042039:CDS
AATGGGAGGATTAGGAAAGG+TGG 0.589689 8.3:-90794 MS.gene042039:CDS
GCCATTGCAGCTGTAGACAA+GGG 0.590322 8.3:+90338 None:intergenic
CGAGGACTAGAGAAGTTTGG+TGG 0.591605 8.3:-89612 MS.gene042039:CDS
CAAACAACAAATAGATAATG+TGG 0.592493 8.3:-88890 MS.gene042039:intron
GATGTAATTGTGATTGGGAG+TGG 0.593011 8.3:-90725 MS.gene042039:CDS
AATCTCCTCGAACAGATAGA+GGG 0.593766 8.3:+90309 None:intergenic
AGATTAGGAGTAAGTACACT+AGG 0.595451 8.3:+89105 None:intergenic
GCTGATTTCTTGTCACGCAT+AGG 0.597690 8.3:-90446 MS.gene042039:CDS
CACCACTGGCAGCAACTGCA+GGG 0.605933 8.3:+88652 None:intergenic
TGGAGTTGAATGTCCAGGAA+AGG 0.606615 8.3:+88725 None:intergenic
CATGAATCATAAGTAGCGCA+GGG 0.607675 8.3:+90488 None:intergenic
GAACCATTTGAGTTGTGGGA+AGG 0.609081 8.3:-89036 MS.gene042039:CDS
TTTGCAGAATGGTACAAACC+AGG 0.612324 8.3:-89690 MS.gene042039:CDS
TATGGACCAGCTATACAAGC+TGG 0.613740 8.3:-88756 MS.gene042039:CDS
TTGCAGAATGGTACAAACCA+GGG 0.620272 8.3:-89689 MS.gene042039:CDS
ATAGATAATGTGGAGAGCAG+TGG 0.622582 8.3:-88880 MS.gene042039:intron
GGAATTGGAGTTGAATGTCC+AGG 0.624562 8.3:+88720 None:intergenic
AGTAATGGGAGGATTAGGAA+AGG 0.625364 8.3:-90797 MS.gene042039:CDS
AGGTTTCTTCGGAGGAACAG+AGG 0.626999 8.3:-88783 MS.gene042039:CDS
GACTAGAGAAGTTTGGTGGG+CGG 0.629357 8.3:-89608 MS.gene042039:CDS
ATTGTTGATGCTCTTGTACG+AGG 0.629566 8.3:-89630 MS.gene042039:CDS
CATCAAGAACTTGAGCAAGA+GGG 0.633604 8.3:+90528 None:intergenic
ATTGGAGTGAAGCTGAGAAG+CGG 0.638801 8.3:-89534 MS.gene042039:CDS
AATGAGCAGCACCTCCAGCA+TGG 0.642493 8.3:+90630 None:intergenic
ATACCTGCAGCTCCATCAAG+GGG 0.643456 8.3:+89651 None:intergenic
TCTTAAAGCTCAAAGATCAG+AGG 0.643901 8.3:-88983 MS.gene042039:intron
TGCAGAATGGTACAAACCAG+GGG 0.644445 8.3:-89688 MS.gene042039:CDS
ATCTCCTCGAACAGATAGAG+GGG 0.646167 8.3:+90310 None:intergenic
ATCATAGTCATAGTAATGGG+AGG 0.651087 8.3:-90808 MS.gene042039:CDS
AAAAGGTGAGAGAAGTTGTG+TGG 0.652152 8.3:+90199 None:intergenic
TGTAACACATGTTTCCCAGT+AGG 0.652977 8.3:+89078 None:intergenic
TGAGCAAGAGGGTTAGCCTG+TGG 0.654171 8.3:+90539 None:intergenic
GATTTCTCTTCAAAGTCACG+TGG 0.656256 8.3:-89586 MS.gene042039:CDS
GAGGACTAGAGAAGTTTGGT+GGG 0.661720 8.3:-89611 MS.gene042039:CDS
TCTCCACAACAATAAAGGTG+TGG 0.665845 8.3:+88699 None:intergenic
AGAAACCTTTGATGTGTGAG+TGG 0.673422 8.3:+88798 None:intergenic
AGGTGCATATCTAGCAGCAG+CGG 0.676346 8.3:+90271 None:intergenic
GAAAGCCACGACCATGCTGG+AGG 0.682926 8.3:-90641 MS.gene042039:CDS
TGGGAGGATTAGGAAAGGTG+GGG 0.683293 8.3:-90792 MS.gene042039:CDS
AGTGGGACCAGGATTCAGCA+GGG 0.693423 8.3:-88850 MS.gene042039:CDS
TGTGAGCAATGCATCAATGT+GGG 0.699079 8.3:-89413 MS.gene042039:CDS
TTGTGAGCAATGCATCAATG+TGG 0.700183 8.3:-89414 MS.gene042039:CDS
TCTCCTCGAACAGATAGAGG+GGG 0.703760 8.3:+90311 None:intergenic
GTGGAACGAAGAGCAGCCTG+AGG 0.714071 8.3:+90218 None:intergenic
ATGAATCATAAGTAGCGCAG+GGG 0.721253 8.3:+90489 None:intergenic
GCAGAATGGTACAAACCAGG+GGG 0.746992 8.3:-89687 MS.gene042039:CDS
TACCTGCAGCTCCATCAAGG+GGG 0.749948 8.3:+89652 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATTAATATACTTACT+TGG + chr8.3:89945-89964 None:intergenic 15.0%
!!! TGATTTTTAAGAAATGAAAT+TGG + chr8.3:89616-89635 None:intergenic 15.0%
!! ATCATATAGTTGTAAATGAT+TGG - chr8.3:90280-90299 MS.gene042039:CDS 20.0%
!! TCATATAGTTGTAAATGATT+GGG - chr8.3:90281-90300 MS.gene042039:CDS 20.0%
! AAACAGATGTAATTGTGATT+GGG - chr8.3:88723-88742 MS.gene042039:CDS 25.0%
! ATCATCATAGTCATAGTAAT+GGG - chr8.3:88642-88661 MS.gene042039:CDS 25.0%
! CAAACAACAAATAGATAATG+TGG - chr8.3:90563-90582 MS.gene042039:CDS 25.0%
!! TTCAATACCTTTTTCCAAAT+GGG - chr8.3:89211-89230 MS.gene042039:intron 25.0%
!! TTTCAATACCTTTTTCCAAA+TGG - chr8.3:89210-89229 MS.gene042039:intron 25.0%
!!! AAAAAGGTATTGAAAAGAGA+AGG + chr8.3:89205-89224 None:intergenic 25.0%
!!! AGCTTTAAGATTTCTGTATT+CGG + chr8.3:90460-90479 None:intergenic 25.0%
AAAGGCTATAAGTTTGATTC+CGG - chr8.3:88857-88876 MS.gene042039:CDS 30.0%
AAATGTGAAGTGAAGTTAGT+TGG - chr8.3:90628-90647 MS.gene042039:CDS 30.0%
AGGATAGAAACTAGTTATTG+TGG + chr8.3:89476-89495 None:intergenic 30.0%
ATCCTATTTGAGTAAGACTT+TGG + chr8.3:90098-90117 None:intergenic 30.0%
CATCATCATAGTCATAGTAA+TGG - chr8.3:88641-88660 MS.gene042039:CDS 30.0%
GAAACAGATGTAATTGTGAT+TGG - chr8.3:88722-88741 MS.gene042039:CDS 30.0%
GCATAACACAAATCTCTAAA+GGG - chr8.3:89533-89552 MS.gene042039:CDS 30.0%
TGCATAACACAAATCTCTAA+AGG - chr8.3:89532-89551 MS.gene042039:CDS 30.0%
TTCCAAAGTCTTACTCAAAT+AGG - chr8.3:90093-90112 MS.gene042039:CDS 30.0%
TTGCAAAGAGTCAAGTATTT+GGG + chr8.3:89281-89300 None:intergenic 30.0%
ACCTAAAAGCAGCAGTTAAA+TGG - chr8.3:89635-89654 MS.gene042039:CDS 35.0%
AGAATCCTTTCATACGCAAT+TGG - chr8.3:89305-89324 MS.gene042039:CDS 35.0%
AGATTAGGAGTAAGTACACT+AGG + chr8.3:90351-90370 None:intergenic 35.0%
AGGTTTACATGTTTGCAGAA+TGG - chr8.3:89752-89771 MS.gene042039:intron 35.0%
ATCTTTCATGCATCTCCATT+TGG - chr8.3:90139-90158 MS.gene042039:CDS 35.0%
ATTCCACACCTTTATTGTTG+TGG - chr8.3:90751-90770 MS.gene042039:CDS 35.0%
CTCACTCTCATTACATTACA+AGG + chr8.3:88593-88612 None:intergenic 35.0%
GAAAACTAACGAAATAGTGC+TGG - chr8.3:89661-89680 MS.gene042039:CDS 35.0%
GAATACTTCAAACAGATGCA+TGG + chr8.3:90219-90238 None:intergenic 35.0%
GAGTCAAGTATTTGGGAAAA+AGG + chr8.3:89274-89293 None:intergenic 35.0%
GTTGCAAAGAGTCAAGTATT+TGG + chr8.3:89282-89301 None:intergenic 35.0%
GTTGTAAATGATTGGGAAAG+AGG - chr8.3:90288-90307 MS.gene042039:CDS 35.0%
TAGTATATTGTCTGCAGAGA+TGG - chr8.3:89369-89388 MS.gene042039:CDS 35.0%
TAGTGTACTTACTCCTAATC+TGG - chr8.3:90350-90369 MS.gene042039:CDS 35.0%
TCAATCCAATTGCGTATGAA+AGG + chr8.3:89313-89332 None:intergenic 35.0%
TCACACATCAAAGGTTTCTT+CGG - chr8.3:90659-90678 MS.gene042039:CDS 35.0%
TCTGCACAAAAAAATGAGAG+AGG + chr8.3:89496-89515 None:intergenic 35.0%
TCTTAAAGCTCAAAGATCAG+AGG - chr8.3:90470-90489 MS.gene042039:CDS 35.0%
TCTTTCATGCATCTCCATTT+GGG - chr8.3:90140-90159 MS.gene042039:CDS 35.0%
TGCAAACCAGAGAATAATGA+TGG + chr8.3:88884-88903 None:intergenic 35.0%
TTACTTTCTTTCTTGCTTGC+TGG - chr8.3:89334-89353 MS.gene042039:CDS 35.0%
! AGGTCCTACTGAGTTTTTAA+AGG - chr8.3:89027-89046 MS.gene042039:CDS 35.0%
! AGGTCCTTTAAAAACTCAGT+AGG + chr8.3:89034-89053 None:intergenic 35.0%
! ATCATAGTCATAGTAATGGG+AGG - chr8.3:88645-88664 MS.gene042039:CDS 35.0%
! CAACAATAAAGGTGTGGAAT+TGG + chr8.3:90751-90770 None:intergenic 35.0%
! GATTCCTGTTGTTTACTTAG+AGG - chr8.3:89572-89591 MS.gene042039:CDS 35.0%
! GCTCATTCTTTTGATGTCAA+AGG - chr8.3:88839-88858 MS.gene042039:CDS 35.0%
!! AACTGAACCATTTGAGTTGT+GGG - chr8.3:90413-90432 MS.gene042039:CDS 35.0%
!! ACTTTGGAACAACTTCTTGA+GGG + chr8.3:90082-90101 None:intergenic 35.0%
!!! TCCATTTAACTGCTGCTTTT+AGG + chr8.3:89639-89658 None:intergenic 35.0%
AAAAGGTGAGAGAAGTTGTG+TGG + chr8.3:89257-89276 None:intergenic 40.0%
AAACATGTAAACCTGAGGGA+AGG + chr8.3:89746-89765 None:intergenic 40.0%
AAATCTCCTCGAACAGATAG+AGG + chr8.3:89148-89167 None:intergenic 40.0%
AACATGTAAACCTGAGGGAA+GGG + chr8.3:89745-89764 None:intergenic 40.0%
AACTCAAATGGTTCAGTTCC+TGG + chr8.3:90411-90430 None:intergenic 40.0%
AATCTCCTCGAACAGATAGA+GGG + chr8.3:89147-89166 None:intergenic 40.0%
ACTGCCTCTAAGTAAACAAC+AGG + chr8.3:89579-89598 None:intergenic 40.0%
AGAAACCTTTGATGTGTGAG+TGG + chr8.3:90658-90677 None:intergenic 40.0%
AGAAATCAGCTTCAGGTACA+TGG + chr8.3:88997-89016 None:intergenic 40.0%
ATAGATAATGTGGAGAGCAG+TGG - chr8.3:90573-90592 MS.gene042039:CDS 40.0%
ATGAATCATAAGTAGCGCAG+GGG + chr8.3:88967-88986 None:intergenic 40.0%
ATTAGCTACAATTGCACCAC+TGG + chr8.3:90818-90837 None:intergenic 40.0%
ATTGTGATTGGGAGTGGTAT+TGG - chr8.3:88734-88753 MS.gene042039:CDS 40.0%
ATTGTTGATGCTCTTGTACG+AGG - chr8.3:89823-89842 MS.gene042039:intron 40.0%
CATCAAGAACTTGAGCAAGA+GGG + chr8.3:88928-88947 None:intergenic 40.0%
CATGAATCATAAGTAGCGCA+GGG + chr8.3:88968-88987 None:intergenic 40.0%
CGCTACTTATGATTCATGGA+TGG - chr8.3:88970-88989 MS.gene042039:intron 40.0%
CTATCTGTTCGAGGAGATTT+CGG - chr8.3:89148-89167 MS.gene042039:CDS 40.0%
CTGCAAACATGTAAACCTGA+GGG + chr8.3:89750-89769 None:intergenic 40.0%
GATGTAATTGTGATTGGGAG+TGG - chr8.3:88728-88747 MS.gene042039:CDS 40.0%
GATTTCTCTTCAAAGTCACG+TGG - chr8.3:89867-89886 MS.gene042039:intron 40.0%
GCTCAAGTTCTTGATGCTTT+GGG - chr8.3:88932-88951 MS.gene042039:intron 40.0%
GTGTTACATGCTTATCTTCC+AGG - chr8.3:90390-90409 MS.gene042039:CDS 40.0%
GTTGAAAATGACAGAGCCAT+TGG - chr8.3:89901-89920 MS.gene042039:intron 40.0%
TATTCAACATCGAGTGAGCA+GGG - chr8.3:90234-90253 MS.gene042039:CDS 40.0%
TCTCCACAACAATAAAGGTG+TGG + chr8.3:90757-90776 None:intergenic 40.0%
TCTGCAAACATGTAAACCTG+AGG + chr8.3:89751-89770 None:intergenic 40.0%
TGCTCAAGTTCTTGATGCTT+TGG - chr8.3:88931-88950 MS.gene042039:intron 40.0%
TGGAGTCTCCACAACAATAA+AGG + chr8.3:90762-90781 None:intergenic 40.0%
TGTAACACATGTTTCCCAGT+AGG + chr8.3:90378-90397 None:intergenic 40.0%
TGTGAGCAATGCATCAATGT+GGG - chr8.3:90040-90059 MS.gene042039:intron 40.0%
TTGCAGAATGGTACAAACCA+GGG - chr8.3:89764-89783 MS.gene042039:intron 40.0%
TTGTGAGCAATGCATCAATG+TGG - chr8.3:90039-90058 MS.gene042039:intron 40.0%
TTTGCAGAATGGTACAAACC+AGG - chr8.3:89763-89782 MS.gene042039:intron 40.0%
! AATGATTGCACGTTGATGAG+TGG + chr8.3:89427-89446 None:intergenic 40.0%
! AGTAATGGGAGGATTAGGAA+AGG - chr8.3:88656-88675 MS.gene042039:CDS 40.0%
! GTCATAGTAATGGGAGGATT+AGG - chr8.3:88651-88670 MS.gene042039:CDS 40.0%
! TCAAGAATGGCAGAAGCTTT+TGG - chr8.3:89081-89100 MS.gene042039:CDS 40.0%
!! ACCAGAGAATAATGATGGAC+CGG + chr8.3:88879-88898 None:intergenic 40.0%
!! GAACTGAACCATTTGAGTTG+TGG - chr8.3:90412-90431 MS.gene042039:CDS 40.0%
!! GACTTTGGAACAACTTCTTG+AGG + chr8.3:90083-90102 None:intergenic 40.0%
!! TGATGAGTGGTAATGGCAAT+TGG + chr8.3:89414-89433 None:intergenic 40.0%
AAGGACCTTCACAACTATGC+AGG - chr8.3:89046-89065 MS.gene042039:CDS 45.0%
AATACCTGCAGCTCCATCAA+GGG + chr8.3:89806-89825 None:intergenic 45.0%
AATGGGAGGATTAGGAAAGG+TGG - chr8.3:88659-88678 MS.gene042039:CDS 45.0%
AGTCCTTCCCACAACTCAAA+TGG + chr8.3:90423-90442 None:intergenic 45.0%
ATCTCCTCGAACAGATAGAG+GGG + chr8.3:89146-89165 None:intergenic 45.0%
ATGGGAGGATTAGGAAAGGT+GGG - chr8.3:88660-88679 MS.gene042039:CDS 45.0%
ATTGCTCACAACAGCCTTCT+TGG + chr8.3:90030-90049 None:intergenic 45.0%
ATTGGAGTGAAGCTGAGAAG+CGG - chr8.3:89919-89938 MS.gene042039:intron 45.0%
CACATCAAAGGTTTCTTCGG+AGG - chr8.3:90662-90681 MS.gene042039:CDS 45.0%
CCATGAATCATAAGTAGCGC+AGG + chr8.3:88969-88988 None:intergenic 45.0%
CCTCAGCATCAAATCCCAAA+TGG + chr8.3:90157-90176 None:intergenic 45.0%
CCTGCGCTACTTATGATTCA+TGG - chr8.3:88966-88985 MS.gene042039:intron 45.0%
CGTGACAAGAAATCAGCTTC+AGG + chr8.3:89004-89023 None:intergenic 45.0%
CTGAGGACCCATTTGGAAAA+AGG + chr8.3:89221-89240 None:intergenic 45.0%
GAAGTCCACTCACACATCAA+AGG - chr8.3:90650-90669 MS.gene042039:CDS 45.0%
GAGGACTAGAGAAGTTTGGT+GGG - chr8.3:89842-89861 MS.gene042039:intron 45.0%
GCATCAAGAACTTGAGCAAG+AGG + chr8.3:88929-88948 None:intergenic 45.0%
GGAATTGGAGTTGAATGTCC+AGG + chr8.3:90736-90755 None:intergenic 45.0%
GTACGAGGACTAGAGAAGTT+TGG - chr8.3:89838-89857 MS.gene042039:intron 45.0%
GTATTCAACATCGAGTGAGC+AGG - chr8.3:90233-90252 MS.gene042039:CDS 45.0%
GTCCTGAAGCTGTTCAAGAA+TGG - chr8.3:89068-89087 MS.gene042039:CDS 45.0%
TATGGACCAGCTATACAAGC+TGG - chr8.3:90697-90716 MS.gene042039:CDS 45.0%
TCCAATTGCATCAAGCAGCT+GGG + chr8.3:90866-90885 None:intergenic 45.0%
TCCGGTCCATCATTATTCTC+TGG - chr8.3:88875-88894 MS.gene042039:CDS 45.0%
TCTGTACCAGCTTGTATAGC+TGG + chr8.3:90706-90725 None:intergenic 45.0%
TGCAGAATGGTACAAACCAG+GGG - chr8.3:89765-89784 MS.gene042039:intron 45.0%
TGCCATTCTTGAACAGCTTC+AGG + chr8.3:89073-89092 None:intergenic 45.0%
TGGAGTTGAATGTCCAGGAA+AGG + chr8.3:90731-90750 None:intergenic 45.0%
TTCCAATTGCATCAAGCAGC+TGG + chr8.3:90867-90886 None:intergenic 45.0%
! CCATTTGGGATTTGATGCTG+AGG - chr8.3:90154-90173 MS.gene042039:CDS 45.0%
! CTTTTTCCAAATGGGTCCTC+AGG - chr8.3:89219-89238 MS.gene042039:intron 45.0%
! GCTGATTTCTTGTCACGCAT+AGG - chr8.3:89007-89026 MS.gene042039:CDS 45.0%
! TGCACGTTGATGAGTGGTAA+TGG + chr8.3:89421-89440 None:intergenic 45.0%
! TTCTCTGGTTTGCAGTCAAG+AGG - chr8.3:88890-88909 MS.gene042039:intron 45.0%
! TTGATGCTGAGGTGAGGTTT+TGG - chr8.3:90165-90184 MS.gene042039:CDS 45.0%
!! GAACCATTTGAGTTGTGGGA+AGG - chr8.3:90417-90436 MS.gene042039:CDS 45.0%
ACTCCTAATCTGGCACCTAC+TGG - chr8.3:90360-90379 MS.gene042039:CDS 50.0%
ACTGAGTTGTGCAGCACTGT+TGG - chr8.3:88760-88779 MS.gene042039:CDS 50.0%
AGCCATTGCAGCTGTAGACA+AGG + chr8.3:89119-89138 None:intergenic 50.0%
AGGTGCATATCTAGCAGCAG+CGG + chr8.3:89185-89204 None:intergenic 50.0%
AGGTTTCTTCGGAGGAACAG+AGG - chr8.3:90670-90689 MS.gene042039:CDS 50.0%
ATACCTGCAGCTCCATCAAG+GGG + chr8.3:89805-89824 None:intergenic 50.0%
ATCATAAGTAGCGCAGGGGA+CGG + chr8.3:88963-88982 None:intergenic 50.0%
CAATACCTGCAGCTCCATCA+AGG + chr8.3:89807-89826 None:intergenic 50.0%
CAGGACCTGCATAGTTGTGA+AGG + chr8.3:89054-89073 None:intergenic 50.0%
CAGGGTATACGCAGCAATCT+AGG - chr8.3:90252-90271 MS.gene042039:CDS 50.0%
CATTTCTCCCTGCTGAATCC+TGG + chr8.3:90613-90632 None:intergenic 50.0%
CGAGGACTAGAGAAGTTTGG+TGG - chr8.3:89841-89860 MS.gene042039:intron 50.0%
CGGAGGAACAGAGGAACATA+TGG - chr8.3:90679-90698 MS.gene042039:CDS 50.0%
CTCCTAATCTGGCACCTACT+GGG - chr8.3:90361-90380 MS.gene042039:CDS 50.0%
GATTAGGAAAGGTGGGGTTG+TGG - chr8.3:88667-88686 MS.gene042039:CDS 50.0%
GCAGAATGGTACAAACCAGG+GGG - chr8.3:89766-89785 MS.gene042039:intron 50.0%
GCAGTTCGTACATGCCAAGA+AGG - chr8.3:90013-90032 MS.gene042039:intron 50.0%
GCCATTGCAGCTGTAGACAA+GGG + chr8.3:89118-89137 None:intergenic 50.0%
GCTGGTACAGATACCTTTCC+TGG - chr8.3:90715-90734 MS.gene042039:CDS 50.0%
GCTTCTCAGCTTCACTCCAA+TGG + chr8.3:89920-89939 None:intergenic 50.0%
TCCCAGCTGCTTGATGCAAT+TGG - chr8.3:90862-90881 MS.gene042039:CDS 50.0%
TCCCTTGTCTACAGCTGCAA+TGG - chr8.3:89114-89133 MS.gene042039:CDS 50.0%
TCTCCTCGAACAGATAGAGG+GGG + chr8.3:89145-89164 None:intergenic 50.0%
TGGGAGGATTAGGAAAGGTG+GGG - chr8.3:88661-88680 MS.gene042039:CDS 50.0%
TGGGATTTGATGCTGAGGTG+AGG - chr8.3:90159-90178 MS.gene042039:CDS 50.0%
TGTCTTGAGTACCCCCTTGA+TGG - chr8.3:89790-89809 MS.gene042039:intron 50.0%
TTCCCAGTAGGTGCCAGATT+AGG + chr8.3:90366-90385 None:intergenic 50.0%
TTTGCAGTCAAGAGGTCCAC+AGG - chr8.3:88898-88917 MS.gene042039:intron 50.0%
! GACTAGAGAAGTTTGGTGGG+CGG - chr8.3:89845-89864 MS.gene042039:intron 50.0%
! GTGATTGGGAGTGGTATTGG+TGG - chr8.3:88737-88756 MS.gene042039:CDS 50.0%
!! GACTCCACTTTTCCTGGCAT+TGG - chr8.3:90775-90794 MS.gene042039:CDS 50.0%
!! TGTGGAGACTCCACTTTTCC+TGG - chr8.3:90769-90788 MS.gene042039:CDS 50.0%
AATGAGCAGCACCTCCAGCA+TGG + chr8.3:88826-88845 None:intergenic 55.0%
AGAGCAGTGGAGAGAGCAGT+GGG - chr8.3:90586-90605 MS.gene042039:CDS 55.0%
AGTGGGACCAGGATTCAGCA+GGG - chr8.3:90603-90622 MS.gene042039:CDS 55.0%
CTTCCCCCTCTATCTGTTCG+AGG - chr8.3:89139-89158 MS.gene042039:CDS 55.0%
GACGCCAATGCCAGGAAAAG+TGG + chr8.3:90782-90801 None:intergenic 55.0%
TACCTGCAGCTCCATCAAGG+GGG + chr8.3:89804-89823 None:intergenic 55.0%
TTCGAAAGCCACGACCATGC+TGG - chr8.3:88809-88828 MS.gene042039:CDS 55.0%
!! TGAGCAAGAGGGTTAGCCTG+TGG + chr8.3:88917-88936 None:intergenic 55.0%
CACCACTGGCAGCAACTGCA+GGG + chr8.3:90804-90823 None:intergenic 60.0%
CAGTGGGACCAGGATTCAGC+AGG - chr8.3:90602-90621 MS.gene042039:CDS 60.0%
CAGTTGCTCTCCCTTCCCTC+AGG - chr8.3:89732-89751 MS.gene042039:intron 60.0%
GAAAGCCACGACCATGCTGG+AGG - chr8.3:88812-88831 MS.gene042039:CDS 60.0%
GAGAGCAGTGGAGAGAGCAG+TGG - chr8.3:90585-90604 MS.gene042039:CDS 60.0%
GAGCAGCCTGAGGACCCATT+TGG + chr8.3:89228-89247 None:intergenic 60.0%
GTGGAACGAAGAGCAGCCTG+AGG + chr8.3:89238-89257 None:intergenic 60.0%
TACCCCCTTGATGGAGCTGC+AGG - chr8.3:89799-89818 MS.gene042039:intron 60.0%
ACTGCAGGGACGCCAATGCC+AGG + chr8.3:90790-90809 None:intergenic 65.0%
CAGCACCTCCAGCATGGTCG+TGG + chr8.3:88820-88839 None:intergenic 65.0%
GCACCACTGGCAGCAACTGC+AGG + chr8.3:90805-90824 None:intergenic 65.0%
GGGTACTCAAGACAGCCCCC+TGG + chr8.3:89784-89803 None:intergenic 65.0%
GTCCCTGCAGTTGCTGCCAG+TGG - chr8.3:90799-90818 MS.gene042039:CDS 65.0%
GTGGAGAGAGCAGTGGGACC+AGG - chr8.3:90592-90611 MS.gene042039:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 88584 90891 88584 ID=MS.gene042039
chr8.3 mRNA 88584 90891 88584 ID=MS.gene042039.t1;Parent=MS.gene042039
chr8.3 exon 90085 90891 90085 ID=MS.gene042039.t1.exon1;Parent=MS.gene042039.t1
chr8.3 CDS 90085 90891 90085 ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1
chr8.3 exon 89530 89721 89530 ID=MS.gene042039.t1.exon2;Parent=MS.gene042039.t1
chr8.3 CDS 89530 89721 89530 ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1
chr8.3 exon 89300 89458 89300 ID=MS.gene042039.t1.exon3;Parent=MS.gene042039.t1
chr8.3 CDS 89300 89458 89300 ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1
chr8.3 exon 88984 89220 88984 ID=MS.gene042039.t1.exon4;Parent=MS.gene042039.t1
chr8.3 CDS 88984 89220 88984 ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1
chr8.3 exon 88584 88898 88584 ID=MS.gene042039.t1.exon5;Parent=MS.gene042039.t1
chr8.3 CDS 88584 88898 88584 ID=cds.MS.gene042039.t1;Parent=MS.gene042039.t1
Gene Sequence

>MS.gene042039

ATGTTTCCTTGTAATGTAATGAGAGTGAGAAGATACTGTTCAAGAATTGATGATGATCATCATCATAGTCATAGTAATGGGAGGATTAGGAAAGGTGGGGTTGTGGTGCGAAACAGCAGCAACAAAGTAGATGAAACAGAAACAGATGTAATTGTGATTGGGAGTGGTATTGGTGGACTGAGTTGTGCAGCACTGTTGGCAAGATATGAACAAGATGTTGTCGTTTTCGAAAGCCACGACCATGCTGGAGGTGCTGCTCATTCTTTTGATGTCAAAGGCTATAAGTTTGATTCCGGTCCATCATTATTCTCTGGTTTGCAGTCAAGAGGTCCACAGGCTAACCCTCTTGCTCAAGTTCTTGATGCTTTGGGAGAGTCCGTCCCCTGCGCTACTTATGATTCATGGATGGTCCATGTACCTGAAGCTGATTTCTTGTCACGCATAGGTCCTACTGAGTTTTTAAAGGACCTTCACAACTATGCAGGTCCTGAAGCTGTTCAAGAATGGCAGAAGCTTTTGGATGCTGTACTTCCCTTGTCTACAGCTGCAATGGCTCTTCCCCCTCTATCTGTTCGAGGAGATTTCGGTGTTCTTTACACCGCTGCTGCTAGATATGCACCTTCTCTTTTCAATACCTTTTTCCAAATGGGTCCTCAGGCTGCTCTTCGTTCCACACAACTTCTCTCACCTTTTTCCCAAATACTTGACTCTTTGCAACTAAAGAATCCTTTCATACGCAATTGGATTGACTTACTTTCTTTCTTGCTTGCTGGTGTCAAATCTGATAGTATATTGTCTGCAGAGATGGTACTATATTTCACATATCTCCAATTGCCATTACCACTCATCAACGTGCAATCATTTATTTATATCATTACATTATTTACGACCACAATAACTAGTTTCTATCCTCTCTCATTTTTTTGTGCAGATAGATTATTAACAGTGTGCATAACACAAATCTCTAAAGGGACTTTTGTTAAATTTTGATTCCTGTTGTTTACTTAGAGGCAGTAGTAGACTAATTGACCAATTTCATTTCTTAAAAATCACCTAAAAGCAGCAGTTAAATGGATAGAAAACTAACGAAATAGTGCTGGTTGAAACATTAGTGAAACGTCATTGCTAATATTCTATTGATGACAAAACAGTTGCTCTCCCTTCCCTCAGGTTTACATGTTTGCAGAATGGTACAAACCAGGGGGCTGTCTTGAGTACCCCCTTGATGGAGCTGCAGGTATTGTTGATGCTCTTGTACGAGGACTAGAGAAGTTTGGTGGGCGGATTTCTCTTCAAAGTCACGTGGAAAAGATTGTTGTTGAAAATGACAGAGCCATTGGAGTGAAGCTGAGAAGCGGCCAAGTAAGTATATTAATTTTGAATGAATATTGATAAGAAAATATCGACTTTATCATGTGTTATGCTTGCTGCAGTTCGTACATGCCAAGAAGGCTGTTGTGAGCAATGCATCAATGTGGGATACTTTAAAATTGCTCCCTCAAGAAGTTGTTCCAAAGTCTTACTCAAATAGGATTAACACGACTAGTCAGTGTGAATCTTTCATGCATCTCCATTTGGGATTTGATGCTGAGGTGAGGTTTTGGTGATTAATTTTATTTAGTCTTTCACTTGCCATGCATCTGTTTGAAGTATTCAACATCGAGTGAGCAGGGTATACGCAGCAATCTAGGAATTCATCATATAGTTGTAAATGATTGGGAAAGAGGAGTTGACGCAGATCAGAATGTTGTGTTGATATCAGTTCCTAGTGTACTTACTCCTAATCTGGCACCTACTGGGAAACATGTGTTACATGCTTATCTTCCAGGAACTGAACCATTTGAGTTGTGGGAAGGACTTGATCGTAAGAGTGCCGAATACAGAAATCTTAAAGCTCAAAGATCAGAGGTATATATGAAATTGAATGAATGAATAACAGCAAGCAGCGTATATGCGTTTTTAATTAATGATTATTATTTCAAACAACAAATAGATAATGTGGAGAGCAGTGGAGAGAGCAGTGGGACCAGGATTCAGCAGGGAGAAATGTGAAGTGAAGTTAGTTGGAAGTCCACTCACACATCAAAGGTTTCTTCGGAGGAACAGAGGAACATATGGACCAGCTATACAAGCTGGTACAGATACCTTTCCTGGACATTCAACTCCAATTCCACACCTTTATTGTTGTGGAGACTCCACTTTTCCTGGCATTGGCGTCCCTGCAGTTGCTGCCAGTGGTGCAATTGTAGCTAATTCTCTAGTTTCAGTGTCTCAGCATTCCCAGCTGCTTGATGCAATTGGAATTTGA

Protein sequence

>MS.gene042039.t1

MFPCNVMRVRRYCSRIDDDHHHSHSNGRIRKGGVVVRNSSNKVDETETDVIVIGSGIGGLSCAALLARYEQDVVVFESHDHAGGAAHSFDVKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESVPCATYDSWMVHVPEADFLSRIGPTEFLKDLHNYAGPEAVQEWQKLLDAVLPLSTAAMALPPLSVRGDFGVLYTAAARYAPSLFNTFFQMGPQAALRSTQLLSPFSQILDSLQLKNPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGAAGIVDALVRGLEKFGGRISLQSHVEKIVVENDRAIGVKLRSGQFVHAKKAVVSNASMWDTLKLLPQEVVPKSYSNRINTTSQCESFMHLHLGFDAEGIRSNLGIHHIVVNDWERGVDADQNVVLISVPSVLTPNLAPTGKHVLHAYLPGTEPFELWEGLDRKSAEYRNLKAQRSEIMWRAVERAVGPGFSREKCEVKLVGSPLTHQRFLRRNRGTYGPAIQAGTDTFPGHSTPIPHLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI