Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042087.t1 | XP_013458657.1 | 97.5 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 2.70E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042087.t1 | Q94B74 | 56.5 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 2.1e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042087.t1 | A0A072US93 | 97.5 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 2.0e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04304 | MS.gene042087 | PPI |
| MS.gene042087 | MS.gene04190 | PPI |
| MS.gene042087 | MS.gene94957 | PPI |
| MS.gene042087 | MS.gene05654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042087.t1 | MTR_4g133945 | 97.491 | 279 | 6 | 1 | 1 | 279 | 1 | 278 | 0.0 | 566 |
| MS.gene042087.t1 | MTR_2g026715 | 72.662 | 278 | 70 | 4 | 4 | 278 | 46 | 320 | 1.17e-148 | 419 |
| MS.gene042087.t1 | MTR_3g460790 | 58.801 | 267 | 107 | 2 | 11 | 277 | 23 | 286 | 2.50e-112 | 325 |
| MS.gene042087.t1 | MTR_8g091995 | 57.422 | 256 | 105 | 2 | 14 | 269 | 19 | 270 | 4.54e-104 | 305 |
| MS.gene042087.t1 | MTR_3g082770 | 54.086 | 257 | 113 | 3 | 13 | 269 | 80 | 331 | 5.21e-102 | 301 |
| MS.gene042087.t1 | MTR_3g460790 | 63.285 | 207 | 74 | 1 | 11 | 217 | 23 | 227 | 8.47e-93 | 275 |
| MS.gene042087.t1 | MTR_2g026715 | 73.864 | 176 | 41 | 3 | 4 | 176 | 59 | 232 | 4.89e-91 | 270 |
| MS.gene042087.t1 | MTR_4g100480 | 46.816 | 267 | 140 | 2 | 13 | 279 | 91 | 355 | 2.12e-84 | 257 |
| MS.gene042087.t1 | MTR_0446s0020 | 95.522 | 67 | 3 | 0 | 213 | 279 | 2 | 68 | 6.74e-43 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042087.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene042087.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene042087.t1 | AT5G47650 | 56.537 | 283 | 112 | 4 | 1 | 277 | 1 | 278 | 1.59e-112 | 326 |
| MS.gene042087.t1 | AT5G47650 | 57.565 | 271 | 110 | 3 | 7 | 277 | 60 | 325 | 1.59e-111 | 325 |
| MS.gene042087.t1 | AT5G47650 | 57.565 | 271 | 110 | 3 | 7 | 277 | 59 | 324 | 1.66e-111 | 325 |
| MS.gene042087.t1 | AT4G25434 | 55.000 | 260 | 110 | 4 | 12 | 269 | 18 | 272 | 6.51e-98 | 289 |
| MS.gene042087.t1 | AT4G25434 | 53.846 | 260 | 108 | 5 | 12 | 269 | 18 | 267 | 7.20e-93 | 276 |
| MS.gene042087.t1 | AT4G25434 | 49.826 | 287 | 110 | 5 | 12 | 269 | 18 | 299 | 5.50e-92 | 275 |
| MS.gene042087.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene042087.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene042087.t1 | AT4G12720 | 51.119 | 268 | 125 | 4 | 10 | 275 | 7 | 270 | 2.72e-91 | 272 |
| MS.gene042087.t1 | AT4G25434 | 48.288 | 292 | 112 | 6 | 7 | 269 | 13 | 294 | 6.25e-87 | 261 |
| MS.gene042087.t1 | AT4G25434 | 60.697 | 201 | 77 | 2 | 12 | 212 | 18 | 216 | 1.54e-85 | 255 |
| MS.gene042087.t1 | AT5G47240 | 48.529 | 272 | 130 | 5 | 1 | 269 | 86 | 350 | 2.43e-84 | 257 |
| MS.gene042087.t1 | AT4G12720 | 44.481 | 308 | 125 | 5 | 10 | 275 | 7 | 310 | 2.74e-83 | 253 |
| MS.gene042087.t1 | AT2G04450 | 49.624 | 266 | 127 | 5 | 7 | 269 | 4 | 265 | 2.74e-83 | 251 |
| MS.gene042087.t1 | AT4G25434 | 59.204 | 201 | 75 | 3 | 12 | 212 | 18 | 211 | 1.78e-80 | 242 |
| MS.gene042087.t1 | AT2G04430 | 49.383 | 243 | 120 | 2 | 10 | 249 | 7 | 249 | 2.62e-80 | 244 |
| MS.gene042087.t1 | AT2G04430 | 49.383 | 243 | 120 | 2 | 10 | 249 | 26 | 268 | 7.28e-80 | 243 |
| MS.gene042087.t1 | AT4G25434 | 52.790 | 233 | 81 | 3 | 7 | 212 | 13 | 243 | 7.38e-80 | 241 |
| MS.gene042087.t1 | AT5G47240 | 43.854 | 301 | 130 | 6 | 1 | 269 | 86 | 379 | 6.14e-78 | 242 |
| MS.gene042087.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 9.93e-78 | 236 |
| MS.gene042087.t1 | AT4G25434 | 56.784 | 199 | 81 | 2 | 73 | 269 | 32 | 227 | 9.93e-78 | 236 |
| MS.gene042087.t1 | AT4G12720 | 55.122 | 205 | 88 | 3 | 10 | 212 | 7 | 209 | 1.21e-75 | 230 |
| MS.gene042087.t1 | AT4G25434 | 55.276 | 199 | 79 | 3 | 73 | 269 | 32 | 222 | 1.49e-72 | 223 |
| MS.gene042087.t1 | AT4G25434 | 57.396 | 169 | 70 | 2 | 7 | 175 | 13 | 179 | 1.33e-64 | 202 |
| MS.gene042087.t1 | AT4G25434 | 48.571 | 210 | 76 | 3 | 89 | 269 | 1 | 207 | 1.27e-62 | 197 |
| MS.gene042087.t1 | AT4G25434 | 49.490 | 196 | 70 | 3 | 7 | 175 | 13 | 206 | 6.87e-59 | 188 |
| MS.gene042087.t1 | AT4G12720 | 49.735 | 189 | 91 | 3 | 89 | 275 | 1 | 187 | 1.54e-58 | 186 |
| MS.gene042087.t1 | AT2G04440 | 44.199 | 181 | 93 | 2 | 7 | 180 | 4 | 183 | 3.67e-45 | 152 |
Find 55 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTACAAGCATCAAATATTT+TGG | 0.159229 | 8.3:-581760 | None:intergenic |
| TTCAAATAAAGATGGCTATT+TGG | 0.203005 | 8.3:-583865 | None:intergenic |
| AAGATTGATGGACATTATTC+TGG | 0.227648 | 8.3:+583802 | MS.gene042087:CDS |
| ATTAATGGATCACCCTATTA+TGG | 0.228313 | 8.3:+580909 | MS.gene042087:CDS |
| ATATGCAGCTCAGCCATTTA+TGG | 0.279024 | 8.3:+583735 | MS.gene042087:CDS |
| TTGTGGAAGTATTAGCATTC+AGG | 0.296467 | 8.3:+583020 | MS.gene042087:CDS |
| CGGTGTTATCGTAGAATTAA+TGG | 0.299809 | 8.3:+580894 | MS.gene042087:CDS |
| TTACACCTTCAATTTCTAAC+TGG | 0.317897 | 8.3:+580956 | MS.gene042087:CDS |
| AAGGTAGTAGAATCCATAAT+AGG | 0.322907 | 8.3:-580922 | None:intergenic |
| GATAAAATTACCTATTCATC+TGG | 0.356295 | 8.3:+581562 | MS.gene042087:CDS |
| ACAATGAATTACTCCTCTTA+AGG | 0.361763 | 8.3:-583897 | None:intergenic |
| ACTCGGTGTGTGGCATTTGC+AGG | 0.374095 | 8.3:-581811 | None:intergenic |
| GCCATTTATGGAAAAGTATG+AGG | 0.393678 | 8.3:+583747 | MS.gene042087:CDS |
| CAGCTTCTATCTCTACCTCC+TGG | 0.398995 | 8.3:-583443 | None:intergenic |
| TCCTACCGGAGTTGCTGATC+AGG | 0.409277 | 8.3:+582728 | MS.gene042087:CDS |
| AATAAAGATGGCTATTTGGC+TGG | 0.419860 | 8.3:-583861 | None:intergenic |
| ACAAGGTTGGCCAGATGAAT+AGG | 0.422162 | 8.3:-581572 | None:intergenic |
| TGTAGGGCAAGAAGGGTGTT+TGG | 0.427765 | 8.3:+581540 | MS.gene042087:intron |
| AATATTTGATGCTTGTACAT+TGG | 0.428434 | 8.3:+581764 | MS.gene042087:CDS |
| AGCCATCTTTATTTGAATGC+TGG | 0.428650 | 8.3:+583871 | MS.gene042087:CDS |
| AGAGAGGTCAAAGAAGAAAC+AGG | 0.434993 | 8.3:+582858 | MS.gene042087:CDS |
| TGTTTCCAGTTAGAAATTGA+AGG | 0.439398 | 8.3:-580961 | None:intergenic |
| AGGTAGTAGAATCCATAATA+GGG | 0.451351 | 8.3:-580921 | None:intergenic |
| CATTGTCTTGTAGGGCAAGA+AGG | 0.454453 | 8.3:+581532 | MS.gene042087:intron |
| TTGATCTTCTTCTTCTGTTG+AGG | 0.456043 | 8.3:-580836 | None:intergenic |
| TCAGATAGACTCGGAATTTG+TGG | 0.463019 | 8.3:+583003 | MS.gene042087:intron |
| ATATACTTGGCAAAGATTGA+TGG | 0.464974 | 8.3:+583790 | MS.gene042087:CDS |
| GCCACACACCGAGTGGGTAT+AGG | 0.471261 | 8.3:+581820 | MS.gene042087:CDS |
| AATTTCTAACTGGAAACAAC+AGG | 0.477830 | 8.3:+580966 | MS.gene042087:CDS |
| TGAATGCTGGAGGCCTTAAG+AGG | 0.480821 | 8.3:+583884 | MS.gene042087:CDS |
| AATTAAAGTTTCCACAAGGT+TGG | 0.483065 | 8.3:-581585 | None:intergenic |
| AACTCCGGTAGGAAATTTCC+AGG | 0.487178 | 8.3:-582718 | None:intergenic |
| AGTGGGTATAGGAGCGTTTG+TGG | 0.489047 | 8.3:+581831 | MS.gene042087:CDS |
| AGAAATTGAAGGTGTAAGAA+TGG | 0.490971 | 8.3:-580950 | None:intergenic |
| TGAGCTGCATATTCATCAAA+TGG | 0.494421 | 8.3:-583724 | None:intergenic |
| GTGTGTGGCATTTGCAGGAA+TGG | 0.522297 | 8.3:-581806 | None:intergenic |
| TCCTATACCCACTCGGTGTG+TGG | 0.529708 | 8.3:-581821 | None:intergenic |
| CTCCAGCATTCAAATAAAGA+TGG | 0.531291 | 8.3:-583873 | None:intergenic |
| AGGTGTAAGAATGGATAAGA+AGG | 0.540844 | 8.3:-580941 | None:intergenic |
| TGCAAATGCCACACACCGAG+TGG | 0.544339 | 8.3:+581813 | MS.gene042087:CDS |
| GGTAGAGATAGAAGCTGCAA+AGG | 0.549918 | 8.3:+583449 | MS.gene042087:CDS |
| ATTGTCTTGTAGGGCAAGAA+GGG | 0.550569 | 8.3:+581533 | MS.gene042087:intron |
| CATCTTTATTTGAATGCTGG+AGG | 0.553074 | 8.3:+583874 | MS.gene042087:CDS |
| TATTCATCTGGCCAACCTTG+TGG | 0.553285 | 8.3:+581574 | MS.gene042087:CDS |
| TTGTGCAGCAGCAGTAAGAG+AGG | 0.565131 | 8.3:+582842 | MS.gene042087:CDS |
| GTACATTAATGACATATACT+TGG | 0.579892 | 8.3:+583777 | MS.gene042087:CDS |
| CATTAATTAAAGTTTCCACA+AGG | 0.606195 | 8.3:-581589 | None:intergenic |
| GGATCCTGGAAATTTCCTAC+CGG | 0.606581 | 8.3:+582714 | MS.gene042087:CDS |
| ATTTACCTGATCAGCAACTC+CGG | 0.611010 | 8.3:-582733 | None:intergenic |
| CAAACGCTCCTATACCCACT+CGG | 0.635355 | 8.3:-581828 | None:intergenic |
| ACCTGATCAGCAACTCCGGT+AGG | 0.652284 | 8.3:-582729 | None:intergenic |
| GCAAATGCCACACACCGAGT+GGG | 0.669457 | 8.3:+581814 | MS.gene042087:CDS |
| ACTTCTCAAAGAATGTCATG+TGG | 0.686811 | 8.3:-583368 | None:intergenic |
| TGTGGTGAATGATAAACGAG+AGG | 0.692588 | 8.3:+581849 | MS.gene042087:CDS |
| TCAACTGATGATGAATATAG+CGG | 0.707705 | 8.3:+580874 | MS.gene042087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTTACTAACTCTAA+TGG | + | chr8.3:581004-581023 | MS.gene042087:intron | 15.0% |
| !!! | AACTTTCTTATTTTGAAAAT+AGG | - | chr8.3:582182-582201 | None:intergenic | 15.0% |
| !! | AATTTCTATTCCCATAATAA+AGG | - | chr8.3:582350-582369 | None:intergenic | 20.0% |
| !! | AGAATATATGTAAGAAATTG+TGG | - | chr8.3:583547-583566 | None:intergenic | 20.0% |
| !! | AGTATCCTTTAAATTGATTA+AGG | - | chr8.3:581093-581112 | None:intergenic | 20.0% |
| !! | ATAAACCATGATATTGTTAT+TGG | - | chr8.3:583185-583204 | None:intergenic | 20.0% |
| !! | ATCTGAAAATTGAAAAAACT+TGG | - | chr8.3:582989-583008 | None:intergenic | 20.0% |
| !! | ATTCATTATATATAGCAACA+GGG | + | chr8.3:583669-583688 | MS.gene042087:intron | 20.0% |
| !! | ATTTCTATTCCCATAATAAA+GGG | - | chr8.3:582349-582368 | None:intergenic | 20.0% |
| !! | CAACAACTAAACAATAAAAT+CGG | - | chr8.3:583247-583266 | None:intergenic | 20.0% |
| !! | CTTATCCTTAATCAATTTAA+AGG | + | chr8.3:581085-581104 | MS.gene042087:intron | 20.0% |
| !! | TATTCATTATATATAGCAAC+AGG | + | chr8.3:583668-583687 | MS.gene042087:intron | 20.0% |
| !! | TCAAAATAAGAAAGTTAACA+AGG | + | chr8.3:582186-582205 | MS.gene042087:intron | 20.0% |
| !! | TTGAAATTATGCACTAAATA+AGG | + | chr8.3:583486-583505 | MS.gene042087:intron | 20.0% |
| !! | TTTAGTTGTTGAAAAAATGT+AGG | + | chr8.3:583256-583275 | MS.gene042087:intron | 20.0% |
| !!! | AATGTTATTTCTATGTATCA+AGG | - | chr8.3:582449-582468 | None:intergenic | 20.0% |
| !!! | CAGTAAATTTTAGTATTATG+AGG | + | chr8.3:583638-583657 | MS.gene042087:intron | 20.0% |
| !!! | TAAGAAATTGTGGTATTTTA+GGG | - | chr8.3:583537-583556 | None:intergenic | 20.0% |
| !!! | TAATATTTCATTTTGTGTGT+TGG | + | chr8.3:583062-583081 | MS.gene042087:intron | 20.0% |
| ! | AATATTTGATGCTTGTACAT+TGG | + | chr8.3:581764-581783 | MS.gene042087:CDS | 25.0% |
| ! | AATGATATTTATGAGTGAGT+GGG | - | chr8.3:581263-581282 | None:intergenic | 25.0% |
| ! | ACAATATCATGGTTTATAAG+CGG | + | chr8.3:583188-583207 | MS.gene042087:intron | 25.0% |
| ! | ACATTCGTTTATTCTTTCAT+CGG | + | chr8.3:583331-583350 | MS.gene042087:intron | 25.0% |
| ! | ACCCTAAATATATAACCATA+TGG | - | chr8.3:581951-581970 | None:intergenic | 25.0% |
| ! | ATGTTATTAGTTAGGCAATA+TGG | + | chr8.3:581132-581151 | MS.gene042087:intron | 25.0% |
| ! | ATTCAGAAAGATTAGGAATA+CGG | + | chr8.3:581436-581455 | MS.gene042087:intron | 25.0% |
| ! | CATTAATTAAAGTTTCCACA+AGG | - | chr8.3:581592-581611 | None:intergenic | 25.0% |
| ! | CCCATATGGTTATATATTTA+GGG | + | chr8.3:581947-581966 | MS.gene042087:intron | 25.0% |
| ! | CCCTAAATATATAACCATAT+GGG | - | chr8.3:581950-581969 | None:intergenic | 25.0% |
| ! | GATAAAATTACCTATTCATC+TGG | + | chr8.3:581562-581581 | MS.gene042087:CDS | 25.0% |
| ! | GTACATTAATGACATATACT+TGG | + | chr8.3:583777-583796 | MS.gene042087:CDS | 25.0% |
| ! | TAATGATATTTATGAGTGAG+TGG | - | chr8.3:581264-581283 | None:intergenic | 25.0% |
| ! | TCCCATATGGTTATATATTT+AGG | + | chr8.3:581946-581965 | MS.gene042087:intron | 25.0% |
| ! | TGAAAAAACTTGGAACAATT+AGG | - | chr8.3:582979-582998 | None:intergenic | 25.0% |
| ! | TGAAGTTCATGTTATTAGTT+AGG | + | chr8.3:581124-581143 | MS.gene042087:intron | 25.0% |
| ! | TGAGTAGATTATATAAACCA+AGG | - | chr8.3:582800-582819 | None:intergenic | 25.0% |
| ! | TTCAAATAAAGATGGCTATT+TGG | - | chr8.3:583868-583887 | None:intergenic | 25.0% |
| ! | TTCTTAGATGCTAAATAATC+AGG | - | chr8.3:581392-581411 | None:intergenic | 25.0% |
| !! | GTAAGAAATTGTGGTATTTT+AGG | - | chr8.3:583538-583557 | None:intergenic | 25.0% |
| !! | TCAATCTAAAACTTATCTAC+TGG | + | chr8.3:581297-581316 | MS.gene042087:intron | 25.0% |
| !! | TGTACAAGCATCAAATATTT+TGG | - | chr8.3:581763-581782 | None:intergenic | 25.0% |
| !! | TTTCAATTTTCAGATAGACT+CGG | + | chr8.3:582994-583013 | MS.gene042087:intron | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | - | chr8.3:583422-583441 | None:intergenic | 25.0% |
| !!! | AAGTTTGATTTTGTAGATAC+AGG | - | chr8.3:583835-583854 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTAGATACA+GGG | - | chr8.3:583834-583853 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTAGATTGAAGGT+GGG | - | chr8.3:581293-581312 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTCAAAAGAAAG+AGG | - | chr8.3:583423-583442 | None:intergenic | 25.0% |
| !!! | CAAAATTTTCCTTAGTTTTC+TGG | - | chr8.3:582005-582024 | None:intergenic | 25.0% |
| !!! | GAATTATGCAGAGTTATTTT+CGG | - | chr8.3:582599-582618 | None:intergenic | 25.0% |
| !!! | GTAGATAAGTTTTAGATTGA+AGG | - | chr8.3:581297-581316 | None:intergenic | 25.0% |
| AACTCTGCATAATTCTGAAT+TGG | + | chr8.3:582604-582623 | MS.gene042087:intron | 30.0% | |
| AAGGTAGTAGAATCCATAAT+AGG | - | chr8.3:580925-580944 | None:intergenic | 30.0% | |
| AATAAACGAATGTGAATTCC+TGG | - | chr8.3:583324-583343 | None:intergenic | 30.0% | |
| AATTAAAGTTTCCACAAGGT+TGG | - | chr8.3:581588-581607 | None:intergenic | 30.0% | |
| AATTTCTAACTGGAAACAAC+AGG | + | chr8.3:580966-580985 | MS.gene042087:CDS | 30.0% | |
| ACAATGAATTACTCCTCTTA+AGG | - | chr8.3:583900-583919 | None:intergenic | 30.0% | |
| AGAAAGTAAAGCTAGAAACT+AGG | + | chr8.3:582274-582293 | MS.gene042087:intron | 30.0% | |
| AGGTAGTAGAATCCATAATA+GGG | - | chr8.3:580924-580943 | None:intergenic | 30.0% | |
| ATATACTTGGCAAAGATTGA+TGG | + | chr8.3:583790-583809 | MS.gene042087:CDS | 30.0% | |
| ATGCTAAATAATCAGGAAAC+TGG | - | chr8.3:581385-581404 | None:intergenic | 30.0% | |
| ATGGGTAGTAATTGAACTAA+GGG | + | chr8.3:581235-581254 | MS.gene042087:intron | 30.0% | |
| CTAGTACTTCAAGAAAAAAC+TGG | + | chr8.3:582675-582694 | MS.gene042087:CDS | 30.0% | |
| CTCATTTCCTAGTTATCAAA+TGG | + | chr8.3:582643-582662 | MS.gene042087:intron | 30.0% | |
| GTGAGATGAAACAATTGATA+TGG | - | chr8.3:581167-581186 | None:intergenic | 30.0% | |
| TCAATTACTACCCATGAAAA+AGG | - | chr8.3:581230-581249 | None:intergenic | 30.0% | |
| TCGAGTTATTCAGAAAGATT+AGG | + | chr8.3:581429-581448 | MS.gene042087:intron | 30.0% | |
| TGAAAAAGGATCAGATCTAT+TGG | - | chr8.3:581216-581235 | None:intergenic | 30.0% | |
| TGAATCAACATTGTCTTGTA+GGG | + | chr8.3:581524-581543 | MS.gene042087:intron | 30.0% | |
| TGTTTCCAGTTAGAAATTGA+AGG | - | chr8.3:580964-580983 | None:intergenic | 30.0% | |
| TTACACCTTCAATTTCTAAC+TGG | + | chr8.3:580956-580975 | MS.gene042087:CDS | 30.0% | |
| TTGAATCAACATTGTCTTGT+AGG | + | chr8.3:581523-581542 | MS.gene042087:intron | 30.0% | |
| TTGTGTATGTGTATCTTGTT+TGG | + | chr8.3:581038-581057 | MS.gene042087:intron | 30.0% | |
| ! | AAGATTGATGGACATTATTC+TGG | + | chr8.3:583802-583821 | MS.gene042087:CDS | 30.0% |
| ! | ACCTCATACTTTTCCATAAA+TGG | - | chr8.3:583751-583770 | None:intergenic | 30.0% |
| ! | AGAAAAAACTGGACATTTTC+AGG | + | chr8.3:582686-582705 | MS.gene042087:CDS | 30.0% |
| ! | AGAAATTGAAGGTGTAAGAA+TGG | - | chr8.3:580953-580972 | None:intergenic | 30.0% |
| ! | ATTAATGGATCACCCTATTA+TGG | + | chr8.3:580909-580928 | MS.gene042087:CDS | 30.0% |
| ! | GAAAAAACTGGACATTTTCA+GGG | + | chr8.3:582687-582706 | MS.gene042087:CDS | 30.0% |
| ! | TCAACTGATGATGAATATAG+CGG | + | chr8.3:580874-580893 | MS.gene042087:CDS | 30.0% |
| ! | TTCATTTTGTGTGTTGGAAA+AGG | + | chr8.3:583068-583087 | MS.gene042087:intron | 30.0% |
| ! | TTCTTTTCATTACTTCGCAT+TGG | + | chr8.3:583563-583582 | MS.gene042087:intron | 30.0% |
| ! | TTCTTTTGACATCAAAATCC+AGG | + | chr8.3:583425-583444 | MS.gene042087:CDS | 30.0% |
| !! | AGCTTACAATTTTGATAACC+AGG | + | chr8.3:583303-583322 | MS.gene042087:intron | 30.0% |
| !! | ATAGATCTGATCCTTTTTCA+TGG | + | chr8.3:581216-581235 | MS.gene042087:intron | 30.0% |
| !! | GTTTGATTTTGTAGATACAG+GGG | - | chr8.3:583833-583852 | None:intergenic | 30.0% |
| !! | TAGATCTGATCCTTTTTCAT+GGG | + | chr8.3:581217-581236 | MS.gene042087:intron | 30.0% |
| !!! | ATTGGAAAGTCTCTTTTTTC+TGG | + | chr8.3:583581-583600 | MS.gene042087:intron | 30.0% |
| !!! | GATAAGTTTTAGATTGAAGG+TGG | - | chr8.3:581294-581313 | None:intergenic | 30.0% |
| !!! | TCAAATATTTTGGTTCTGCA+TGG | - | chr8.3:581753-581772 | None:intergenic | 30.0% |
| AAACTAGGAATCTTTACCTC+AGG | + | chr8.3:582289-582308 | MS.gene042087:intron | 35.0% | |
| AAATGACAAGTTAGTACGCA+AGG | - | chr8.3:581675-581694 | None:intergenic | 35.0% | |
| AATAAAGATGGCTATTTGGC+TGG | - | chr8.3:583864-583883 | None:intergenic | 35.0% | |
| AATTAGGCTTAGAATCACGT+TGG | - | chr8.3:582963-582982 | None:intergenic | 35.0% | |
| ACAAAACTTGGGTCTCAATA+AGG | + | chr8.3:581460-581479 | MS.gene042087:intron | 35.0% | |
| ACTTCTCAAAGAATGTCATG+TGG | - | chr8.3:583371-583390 | None:intergenic | 35.0% | |
| AGGAATACGGAACAAAACTT+GGG | + | chr8.3:581449-581468 | MS.gene042087:intron | 35.0% | |
| AGGAGTAAGTAATCTCTTTG+CGG | + | chr8.3:582878-582897 | MS.gene042087:intron | 35.0% | |
| AGGTGTAAGAATGGATAAGA+AGG | - | chr8.3:580944-580963 | None:intergenic | 35.0% | |
| ATCCAGATAACTTTCTACGT+AGG | + | chr8.3:582239-582258 | MS.gene042087:intron | 35.0% | |
| ATGTCTAGTGCACATTCAAT+AGG | - | chr8.3:582906-582925 | None:intergenic | 35.0% | |
| CAAAACTTGGGTCTCAATAA+GGG | + | chr8.3:581461-581480 | MS.gene042087:intron | 35.0% | |
| CATGGGTAGTAATTGAACTA+AGG | + | chr8.3:581234-581253 | MS.gene042087:intron | 35.0% | |
| CCTAGTTATCAAATGGTGTT+AGG | + | chr8.3:582650-582669 | MS.gene042087:intron | 35.0% | |
| CTCCAGCATTCAAATAAAGA+TGG | - | chr8.3:583876-583895 | None:intergenic | 35.0% | |
| GTGCACCAATAACAATATCA+TGG | + | chr8.3:583177-583196 | MS.gene042087:intron | 35.0% | |
| TAGGAATACGGAACAAAACT+TGG | + | chr8.3:581448-581467 | MS.gene042087:intron | 35.0% | |
| TAGTAGAAGAAGCTATTCCT+TGG | + | chr8.3:582780-582799 | MS.gene042087:intron | 35.0% | |
| TATTAGTTAGGCAATATGGC+TGG | + | chr8.3:581136-581155 | MS.gene042087:intron | 35.0% | |
| TGAGCTGCATATTCATCAAA+TGG | - | chr8.3:583727-583746 | None:intergenic | 35.0% | |
| TGCACTAGACATGAACTTAT+TGG | + | chr8.3:582914-582933 | MS.gene042087:intron | 35.0% | |
| TTAATTGTTATGTGCTGCAG+TGG | + | chr8.3:583698-583717 | MS.gene042087:intron | 35.0% | |
| TTCTACGTAGGTGTGTATAA+AGG | + | chr8.3:582251-582270 | MS.gene042087:intron | 35.0% | |
| TTGATCTTCTTCTTCTGTTG+AGG | - | chr8.3:580839-580858 | None:intergenic | 35.0% | |
| ! | AGCCATCTTTATTTGAATGC+TGG | + | chr8.3:583871-583890 | MS.gene042087:CDS | 35.0% |
| ! | CATCTTTATTTGAATGCTGG+AGG | + | chr8.3:583874-583893 | MS.gene042087:CDS | 35.0% |
| ! | CCTAACACCATTTGATAACT+AGG | - | chr8.3:582653-582672 | None:intergenic | 35.0% |
| ! | GCCATTTATGGAAAAGTATG+AGG | + | chr8.3:583747-583766 | MS.gene042087:CDS | 35.0% |
| ! | TTTTGACATCAAAATCCAGG+AGG | + | chr8.3:583428-583447 | MS.gene042087:CDS | 35.0% |
| !! | CGGTGTTATCGTAGAATTAA+TGG | + | chr8.3:580894-580913 | MS.gene042087:CDS | 35.0% |
| !! | GCTTGATCAGAAGCATTATT+AGG | + | chr8.3:582103-582122 | MS.gene042087:intron | 35.0% |
| !! | TGGAAAAGTATGAGGTTTTG+AGG | + | chr8.3:583755-583774 | MS.gene042087:CDS | 35.0% |
| !! | TTGTGGAAGTATTAGCATTC+AGG | + | chr8.3:583020-583039 | MS.gene042087:CDS | 35.0% |
| AAACTTCCAATGGCTGAACA+TGG | + | chr8.3:583098-583117 | MS.gene042087:intron | 40.0% | |
| AACGTGACCAAGCAAAAACA+AGG | - | chr8.3:583129-583148 | None:intergenic | 40.0% | |
| AATCTACTCATTCTGCTGCA+GGG | + | chr8.3:582810-582829 | MS.gene042087:intron | 40.0% | |
| AGAGAGGTCAAAGAAGAAAC+AGG | + | chr8.3:582858-582877 | MS.gene042087:CDS | 40.0% | |
| AGATCACATAGGAAGACAGA+TGG | - | chr8.3:582537-582556 | None:intergenic | 40.0% | |
| AGATGGCTGTCCCTTTATTA+TGG | + | chr8.3:582336-582355 | MS.gene042087:intron | 40.0% | |
| AGGAAGTTCCAAACTTCCAA+TGG | + | chr8.3:583088-583107 | MS.gene042087:intron | 40.0% | |
| ATATGCAGCTCAGCCATTTA+TGG | + | chr8.3:583735-583754 | MS.gene042087:CDS | 40.0% | |
| ATGTTCAGCCATTGGAAGTT+TGG | - | chr8.3:583099-583118 | None:intergenic | 40.0% | |
| ATTGTCTTGTAGGGCAAGAA+GGG | + | chr8.3:581533-581552 | MS.gene042087:intron | 40.0% | |
| ATTTACCTGATCAGCAACTC+CGG | - | chr8.3:582736-582755 | None:intergenic | 40.0% | |
| CACCTACGTAGAAAGTTATC+TGG | - | chr8.3:582244-582263 | None:intergenic | 40.0% | |
| GATCAGGTTTCTGCACAATT+TGG | + | chr8.3:581911-581930 | MS.gene042087:intron | 40.0% | |
| GATGGCTGTCCCTTTATTAT+GGG | + | chr8.3:582337-582356 | MS.gene042087:intron | 40.0% | |
| GCATTATTAGGTGAGTCCTA+TGG | + | chr8.3:582115-582134 | MS.gene042087:intron | 40.0% | |
| TAATCTACTCATTCTGCTGC+AGG | + | chr8.3:582809-582828 | MS.gene042087:intron | 40.0% | |
| TATCTGTCACAATTCTGTGC+AGG | + | chr8.3:581711-581730 | MS.gene042087:intron | 40.0% | |
| TCAGATAGACTCGGAATTTG+TGG | + | chr8.3:583003-583022 | MS.gene042087:intron | 40.0% | |
| TCTAACTGGAAACAACAGGT+AGG | + | chr8.3:580970-580989 | MS.gene042087:intron | 40.0% | |
| TGTGGTGAATGATAAACGAG+AGG | + | chr8.3:581849-581868 | MS.gene042087:CDS | 40.0% | |
| ! | ATTCTGTGCAGGAAGGTTTT+TGG | + | chr8.3:581722-581741 | MS.gene042087:intron | 40.0% |
| ! | GTACTGACAACAGATCACAT+AGG | - | chr8.3:582548-582567 | None:intergenic | 40.0% |
| !! | GGAAGTATTAGCATTCAGGT+GGG | + | chr8.3:583024-583043 | MS.gene042087:intron | 40.0% |
| !! | TGGAAGTATTAGCATTCAGG+TGG | + | chr8.3:583023-583042 | MS.gene042087:intron | 40.0% |
| AACTCCGGTAGGAAATTTCC+AGG | - | chr8.3:582721-582740 | None:intergenic | 45.0% | |
| ACAAGCTCAACAAGCTCATG+AGG | + | chr8.3:582051-582070 | MS.gene042087:intron | 45.0% | |
| ACTGGAAACAACAGGTAGGT+AGG | + | chr8.3:580974-580993 | MS.gene042087:intron | 45.0% | |
| CACACTCCCATATGGTTAGA+TGG | + | chr8.3:582319-582338 | MS.gene042087:intron | 45.0% | |
| CATTGTCTTGTAGGGCAAGA+AGG | + | chr8.3:581532-581551 | MS.gene042087:intron | 45.0% | |
| CTAGCGTGACCAGAAAACTA+AGG | + | chr8.3:581993-582012 | MS.gene042087:intron | 45.0% | |
| CTAGTGACAATTTCCAGCAC+AGG | - | chr8.3:581495-581514 | None:intergenic | 45.0% | |
| GAAGCACAAACACTCCCATA+TGG | + | chr8.3:581933-581952 | MS.gene042087:intron | 45.0% | |
| GGAAACCTTTACCGTTCTTC+AGG | - | chr8.3:582161-582180 | None:intergenic | 45.0% | |
| GGACAGCCATCTAACCATAT+GGG | - | chr8.3:582328-582347 | None:intergenic | 45.0% | |
| GGATCCTGGAAATTTCCTAC+CGG | + | chr8.3:582714-582733 | MS.gene042087:CDS | 45.0% | |
| GGTAGAGATAGAAGCTGCAA+AGG | + | chr8.3:583449-583468 | MS.gene042087:CDS | 45.0% | |
| GTCCTATGGATACACAACTC+CGG | + | chr8.3:582129-582148 | MS.gene042087:intron | 45.0% | |
| TATGGATACACAACTCCGGT+GGG | + | chr8.3:582133-582152 | MS.gene042087:intron | 45.0% | |
| TATTCATCTGGCCAACCTTG+TGG | + | chr8.3:581574-581593 | MS.gene042087:CDS | 45.0% | |
| TGTCACAATTCTGTGCAGGA+AGG | + | chr8.3:581715-581734 | MS.gene042087:intron | 45.0% | |
| TGTGCAGAAACCTGATCATG+TGG | - | chr8.3:581908-581927 | None:intergenic | 45.0% | |
| ! | ACAAGGTTGGCCAGATGAAT+AGG | - | chr8.3:581575-581594 | None:intergenic | 45.0% |
| !! | ACTGGACATTTTCAGGGAAC+TGG | + | chr8.3:582693-582712 | MS.gene042087:CDS | 45.0% |
| !! | ATTTTCAGGGAACTGGATCC+TGG | + | chr8.3:582700-582719 | MS.gene042087:CDS | 45.0% |
| !! | CTTAGTTTTCTGGTCACGCT+AGG | - | chr8.3:581995-582014 | None:intergenic | 45.0% |
| !!! | GGAGAGTCCTTGTTTTTGCT+TGG | + | chr8.3:583119-583138 | MS.gene042087:intron | 45.0% |
| !!! | TCACGTTGGTTCTTTTGTCG+TGG | - | chr8.3:582949-582968 | None:intergenic | 45.0% |
| AAGGGACAGTTTACCTGTGC+TGG | + | chr8.3:581479-581498 | MS.gene042087:intron | 50.0% | |
| AGCGGTCAGATAATACGTGC+TGG | + | chr8.3:583206-583225 | MS.gene042087:intron | 50.0% | |
| CAAACGCTCCTATACCCACT+CGG | - | chr8.3:581831-581850 | None:intergenic | 50.0% | |
| CACCGGAGTTGTGTATCCAT+AGG | - | chr8.3:582134-582153 | None:intergenic | 50.0% | |
| CAGCTTCTATCTCTACCTCC+TGG | - | chr8.3:583446-583465 | None:intergenic | 50.0% | |
| CTATGGATACACAACTCCGG+TGG | + | chr8.3:582132-582151 | MS.gene042087:intron | 50.0% | |
| GAAGCACACACACTCCCATA+TGG | + | chr8.3:582311-582330 | MS.gene042087:intron | 50.0% | |
| GACTCTCCATGTTCAGCCAT+TGG | - | chr8.3:583107-583126 | None:intergenic | 50.0% | |
| GGGACAGCCATCTAACCATA+TGG | - | chr8.3:582329-582348 | None:intergenic | 50.0% | |
| GGGTTCCTGAAGAACGGTAA+AGG | + | chr8.3:582153-582172 | MS.gene042087:intron | 50.0% | |
| GTGTGTGGCATTTGCAGGAA+TGG | - | chr8.3:581809-581828 | None:intergenic | 50.0% | |
| TGAATGCTGGAGGCCTTAAG+AGG | + | chr8.3:583884-583903 | MS.gene042087:CDS | 50.0% | |
| TGCAGAGCAACCACATGATC+AGG | + | chr8.3:581895-581914 | MS.gene042087:intron | 50.0% | |
| TTGTGCAGCAGCAGTAAGAG+AGG | + | chr8.3:582842-582861 | MS.gene042087:CDS | 50.0% | |
| !! | AGTGGGTATAGGAGCGTTTG+TGG | + | chr8.3:581831-581850 | MS.gene042087:CDS | 50.0% |
| !! | TGTAGGGCAAGAAGGGTGTT+TGG | + | chr8.3:581540-581559 | MS.gene042087:intron | 50.0% |
| ACCGTTCTTCAGGAACCCAC+CGG | - | chr8.3:582151-582170 | None:intergenic | 55.0% | |
| ACCTGATCAGCAACTCCGGT+AGG | - | chr8.3:582732-582751 | None:intergenic | 55.0% | |
| GCAAATGCCACACACCGAGT+GGG | + | chr8.3:581814-581833 | MS.gene042087:CDS | 55.0% | |
| TCCTACCGGAGTTGCTGATC+AGG | + | chr8.3:582728-582747 | MS.gene042087:CDS | 55.0% | |
| TGCAAATGCCACACACCGAG+TGG | + | chr8.3:581813-581832 | MS.gene042087:CDS | 55.0% | |
| ! | TCCGGTGGGTTCCTGAAGAA+CGG | + | chr8.3:582147-582166 | MS.gene042087:intron | 55.0% |
| !! | ACTCGGTGTGTGGCATTTGC+AGG | - | chr8.3:581814-581833 | None:intergenic | 55.0% |
| !! | TCCTATACCCACTCGGTGTG+TGG | - | chr8.3:581824-581843 | None:intergenic | 55.0% |
| GCCACACACCGAGTGGGTAT+AGG | + | chr8.3:581820-581839 | MS.gene042087:CDS | 60.0% | |
| ! | GGGAGTGTGTGTGCTTCCTG+AGG | - | chr8.3:582308-582327 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 580829 | 583921 | 580829 | ID=MS.gene042087 |
| chr8.3 | mRNA | 580829 | 583921 | 580829 | ID=MS.gene042087.t1;Parent=MS.gene042087 |
| chr8.3 | exon | 580829 | 580987 | 580829 | ID=MS.gene042087.t1.exon1;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 580829 | 580987 | 580829 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 581545 | 581610 | 581545 | ID=MS.gene042087.t1.exon2;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 581545 | 581610 | 581545 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 581733 | 581870 | 581733 | ID=MS.gene042087.t1.exon3;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 581733 | 581870 | 581733 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 582672 | 582749 | 582672 | ID=MS.gene042087.t1.exon4;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 582672 | 582749 | 582672 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 582831 | 582881 | 582831 | ID=MS.gene042087.t1.exon5;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 582831 | 582881 | 582831 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 583007 | 583041 | 583007 | ID=MS.gene042087.t1.exon6;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 583007 | 583041 | 583007 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 583362 | 583470 | 583362 | ID=MS.gene042087.t1.exon7;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 583362 | 583470 | 583362 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| chr8.3 | exon | 583718 | 583921 | 583718 | ID=MS.gene042087.t1.exon8;Parent=MS.gene042087.t1 |
| chr8.3 | CDS | 583718 | 583921 | 583718 | ID=cds.MS.gene042087.t1;Parent=MS.gene042087.t1 |
| Gene Sequence |
| Protein sequence |
