AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042162

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042162.t1 MTR_4g132490 94.495 327 17 1 1 326 1 327 0.0 636
MS.gene042162.t1 MTR_2g029850 39.275 331 192 4 1 326 4 330 1.09e-75 236
MS.gene042162.t1 MTR_2g029820 39.688 320 182 5 13 326 16 330 2.13e-75 236
MS.gene042162.t1 MTR_1g066640 38.206 301 181 4 28 326 26 323 1.24e-73 230
MS.gene042162.t1 MTR_2g029860 39.339 333 185 5 6 326 3 330 1.21e-72 228
MS.gene042162.t1 MTR_2g029830 40.000 305 175 4 28 326 27 329 2.11e-72 228
MS.gene042162.t1 MTR_1g066380 37.542 301 183 4 28 326 26 323 2.52e-72 227
MS.gene042162.t1 MTR_2g029815 38.438 333 190 6 4 326 3 330 3.55e-71 225
MS.gene042162.t1 MTR_2g029750 39.640 333 186 6 4 326 3 330 4.10e-71 224
MS.gene042162.t1 MTR_5g021060 38.689 305 182 3 26 326 27 330 6.33e-71 223
MS.gene042162.t1 MTR_6g043460 40.000 320 174 9 7 322 19 324 4.03e-70 222
MS.gene042162.t1 MTR_6g043280 42.020 307 162 7 24 326 38 332 7.34e-70 221
MS.gene042162.t1 MTR_6g043240 40.984 305 166 7 24 326 39 331 2.28e-69 220
MS.gene042162.t1 MTR_2g029910 38.438 333 193 6 1 326 5 332 2.75e-69 220
MS.gene042162.t1 MTR_1g066710 36.545 301 186 4 28 326 26 323 3.57e-69 219
MS.gene042162.t1 MTR_3g094650 36.667 300 185 2 28 326 27 322 1.40e-68 217
MS.gene042162.t1 MTR_1g066680 38.206 301 180 5 28 326 26 322 3.93e-68 216
MS.gene042162.t1 MTR_1g101830 36.585 328 193 8 6 326 3 322 7.08e-68 215
MS.gene042162.t1 MTR_2g029740 37.812 320 188 5 13 326 16 330 1.39e-67 216
MS.gene042162.t1 MTR_2g029560 37.829 304 183 3 28 326 23 325 1.41e-67 215
MS.gene042162.t1 MTR_2g028980 40.717 307 170 8 28 326 28 330 3.08e-67 214
MS.gene042162.t1 MTR_5g022870 35.913 323 197 5 7 326 1 316 3.38e-67 213
MS.gene042162.t1 MTR_2g084110 37.667 300 180 3 28 326 24 317 4.91e-67 213
MS.gene042162.t1 MTR_4g132110 37.662 308 187 4 21 326 24 328 2.20e-66 212
MS.gene042162.t1 MTR_5g014100 37.255 306 184 4 29 326 26 331 2.42e-66 212
MS.gene042162.t1 MTR_1g090760 35.241 332 199 7 3 326 7 330 2.92e-66 211
MS.gene042162.t1 MTR_5g083860 35.179 307 194 2 21 326 23 325 2.92e-66 211
MS.gene042162.t1 MTR_4g087965 38.614 303 179 4 28 323 41 343 5.37e-66 211
MS.gene042162.t1 MTR_2g029800 35.152 330 203 5 3 326 6 330 1.24e-65 211
MS.gene042162.t1 MTR_4g132110 38.019 313 184 6 21 326 24 333 3.11e-65 209
MS.gene042162.t1 MTR_7g086870 39.933 298 171 5 29 326 22 311 3.72e-65 208
MS.gene042162.t1 MTR_4g030890 35.354 297 185 3 33 326 104 396 3.84e-65 211
MS.gene042162.t1 MTR_8g075100 35.855 304 185 5 26 326 23 319 7.17e-65 207
MS.gene042162.t1 MTR_8g076820 36.624 314 192 4 19 326 18 330 1.10e-64 207
MS.gene042162.t1 MTR_3g072190 34.906 318 202 2 9 326 6 318 1.12e-64 207
MS.gene042162.t1 MTR_2g084080 36.667 300 183 3 28 326 24 317 1.78e-64 206
MS.gene042162.t1 MTR_3g466200 34.967 306 193 3 23 326 19 320 8.32e-64 205
MS.gene042162.t1 MTR_1g022970 38.782 312 178 6 21 326 43 347 1.26e-63 205
MS.gene042162.t1 MTR_2g029730 37.829 304 183 3 28 326 24 326 1.89e-63 204
MS.gene042162.t1 MTR_7g029030 35.220 318 199 4 13 326 6 320 2.34e-63 204
MS.gene042162.t1 MTR_7g072510 36.478 318 195 3 10 326 1 312 2.83e-63 203
MS.gene042162.t1 MTR_4g031140 34.314 306 194 3 24 326 23 324 2.93e-63 204
MS.gene042162.t1 MTR_2g084000 35.880 301 185 4 28 326 25 319 7.42e-63 202
MS.gene042162.t1 MTR_0286s0010 35.831 307 192 4 24 326 29 334 1.18e-62 202
MS.gene042162.t1 MTR_6g008075 35.831 307 192 4 24 326 29 334 1.18e-62 202
MS.gene042162.t1 MTR_2g084090 35.333 300 188 3 28 326 24 318 1.23e-62 202
MS.gene042162.t1 MTR_0155s0040 35.093 322 197 6 7 326 4 315 1.47e-62 201
MS.gene042162.t1 MTR_2g084010 35.093 322 195 7 9 326 7 318 1.53e-62 201
MS.gene042162.t1 MTR_1g025980 34.385 317 199 5 10 323 5 315 3.15e-62 201
MS.gene042162.t1 MTR_8g062780 36.452 310 191 4 22 326 16 324 4.07e-62 201
MS.gene042162.t1 MTR_7g086820 34.194 310 193 6 18 326 13 312 7.78e-62 199
MS.gene042162.t1 MTR_2g084020 35.216 301 187 4 28 326 24 318 1.29e-61 199
MS.gene042162.t1 MTR_3g092990 33.951 324 211 1 6 326 3 326 3.48e-61 198
MS.gene042162.t1 MTR_6g027440 34.568 324 200 6 5 326 1 314 4.66e-61 197
MS.gene042162.t1 MTR_4g029200 36.120 299 186 2 28 326 45 338 1.02e-60 197
MS.gene042162.t1 MTR_3g105790 35.030 334 197 7 1 326 1 322 2.29e-60 196
MS.gene042162.t1 MTR_4g125940 35.202 321 197 5 13 326 13 329 2.64e-60 196
MS.gene042162.t1 MTR_7g026990 33.750 320 203 3 7 326 12 322 5.66e-60 195
MS.gene042162.t1 MTR_1g066380 38.672 256 152 4 73 326 3 255 1.08e-59 192
MS.gene042162.t1 MTR_3g094670 34.426 305 195 2 23 326 22 322 1.66e-59 194
MS.gene042162.t1 MTR_1g077000 37.584 298 177 5 29 326 39 327 2.47e-59 193
MS.gene042162.t1 MTR_2g029830 39.768 259 148 4 74 326 5 261 2.84e-59 192
MS.gene042162.t1 MTR_5g074970 34.347 329 203 5 2 326 7 326 3.39e-59 193
MS.gene042162.t1 MTR_5g074860 33.939 330 207 5 1 325 1 324 4.85e-59 192
MS.gene042162.t1 MTR_1g054205 36.039 308 184 5 28 326 23 326 8.63e-59 192
MS.gene042162.t1 MTR_7g072480 34.462 325 203 4 3 326 1 316 1.05e-58 191
MS.gene042162.t1 MTR_4g122640 32.938 337 212 4 3 326 1 336 1.70e-58 191
MS.gene042162.t1 MTR_5g017850 34.653 303 192 4 28 326 26 326 3.37e-58 191
MS.gene042162.t1 MTR_5g017860 35.644 303 189 4 28 326 26 326 3.37e-58 191
MS.gene042162.t1 MTR_4g114210 36.474 329 190 7 7 326 2 320 3.73e-58 190
MS.gene042162.t1 MTR_5g049280 32.899 307 197 4 28 326 32 337 3.76e-58 191
MS.gene042162.t1 MTR_4g029170 34.333 300 190 4 29 326 27 321 4.56e-58 190
MS.gene042162.t1 MTR_2g099175 34.615 338 202 6 1 326 5 335 5.30e-58 190
MS.gene042162.t1 MTR_7g107520 34.347 329 202 8 3 326 1 320 3.12e-57 188
MS.gene042162.t1 MTR_1g086320 33.333 327 211 5 7 326 7 333 4.25e-57 188
MS.gene042162.t1 MTR_3g094630 33.443 305 198 2 23 326 22 322 5.17e-57 187
MS.gene042162.t1 MTR_7g093370 35.082 305 191 4 28 326 68 371 9.54e-57 188
MS.gene042162.t1 MTR_1g009750 35.599 309 183 7 28 326 26 328 1.42e-56 186
MS.gene042162.t1 MTR_4g083710 33.113 302 196 3 28 326 26 324 2.15e-56 186
MS.gene042162.t1 MTR_2g008710 35.780 327 194 6 10 326 5 325 2.31e-56 186
MS.gene042162.t1 MTR_3g466180 34.891 321 194 4 7 326 17 323 2.51e-56 186
MS.gene042162.t1 MTR_4g046713 33.645 321 201 5 13 326 11 326 2.72e-56 186
MS.gene042162.t1 MTR_4g029190 36.486 296 181 3 33 326 50 340 4.77e-56 185
MS.gene042162.t1 MTR_5g016010 34.768 302 188 6 28 322 26 325 3.03e-55 183
MS.gene042162.t1 MTR_2g437770 35.855 304 181 6 27 326 48 341 3.79e-55 183
MS.gene042162.t1 MTR_2g078610 35.694 353 184 11 14 325 55 405 1.79e-54 183
MS.gene042162.t1 MTR_4g029180 33.333 297 191 4 32 326 30 321 1.88e-54 181
MS.gene042162.t1 MTR_4g127670 35.179 307 185 6 28 326 23 323 5.02e-54 179
MS.gene042162.t1 MTR_2g088770 35.065 308 184 9 28 326 25 325 1.38e-53 179
MS.gene042162.t1 MTR_1g086490 33.234 334 209 6 7 326 7 340 1.88e-53 179
MS.gene042162.t1 MTR_2g040000 35.065 308 187 7 28 326 28 331 2.08e-53 178
MS.gene042162.t1 MTR_4g133800 33.223 301 188 5 30 326 42 333 2.70e-53 178
MS.gene042162.t1 MTR_2g077990 35.674 356 180 11 14 325 55 405 2.85e-53 180
MS.gene042162.t1 MTR_2g067440 34.783 345 184 9 18 325 46 386 1.66e-52 177
MS.gene042162.t1 MTR_1g115900 33.887 301 192 4 28 326 26 321 2.62e-52 175
MS.gene042162.t1 MTR_3g092990 32.407 324 205 2 6 326 3 315 3.23e-52 175
MS.gene042162.t1 MTR_5g033470 34.405 311 197 6 23 326 67 377 5.52e-52 176
MS.gene042162.t1 MTR_4g095450 34.185 313 176 6 28 325 26 323 1.77e-51 173
MS.gene042162.t1 MTR_1g038680 34.983 303 185 6 33 326 33 332 6.01e-51 172
MS.gene042162.t1 MTR_3g072190 35.039 254 160 2 73 326 3 251 9.88e-51 169
MS.gene042162.t1 MTR_4g074990 32.817 323 193 5 10 326 1 305 1.86e-50 170
MS.gene042162.t1 MTR_4g125940 35.379 277 169 4 57 326 1 274 3.28e-50 168
MS.gene042162.t1 MTR_2g078280 35.294 340 177 11 14 312 55 392 1.39e-49 170
MS.gene042162.t1 MTR_4g074995 31.126 302 189 4 28 326 23 308 1.69e-49 167
MS.gene042162.t1 MTR_5g074760 32.566 304 194 6 28 326 24 321 6.20e-49 166
MS.gene042162.t1 MTR_4g074980 35.938 256 149 3 5 258 11 253 1.13e-48 164
MS.gene042162.t1 MTR_5g074740 32.566 304 194 6 28 326 24 321 2.02e-48 165
MS.gene042162.t1 MTR_3g467600 31.661 319 208 5 13 326 11 324 2.70e-48 165
MS.gene042162.t1 MTR_1g009750 33.225 307 176 8 28 326 26 311 1.69e-46 160
MS.gene042162.t1 MTR_5g074710 30.263 304 201 5 28 326 24 321 6.60e-46 158
MS.gene042162.t1 MTR_4g074980 31.193 327 177 5 5 326 11 294 2.96e-45 156
MS.gene042162.t1 MTR_3g105790 35.918 245 145 4 90 326 6 246 3.02e-44 152
MS.gene042162.t1 MTR_2g067450 33.333 309 190 6 26 325 8 309 1.68e-42 149
MS.gene042162.t1 MTR_2g008160 30.990 313 192 7 27 326 22 323 1.07e-40 145
MS.gene042162.t1 MTR_5g074860 29.697 330 182 5 1 325 1 285 2.99e-40 142
MS.gene042162.t1 MTR_2g008730 36.017 236 142 4 98 326 68 301 2.10e-38 138
MS.gene042162.t1 MTR_0147s0010 30.841 321 182 6 29 325 77 381 3.10e-38 140
MS.gene042162.t1 MTR_2g029880 35.602 191 107 4 141 326 9 188 4.98e-32 119
MS.gene042162.t1 MTR_2g008160 35.795 176 109 2 27 202 22 193 1.44e-31 117
MS.gene042162.t1 MTR_2g008160 28.387 310 167 7 28 326 23 288 4.26e-31 119
MS.gene042162.t1 MTR_5g074700 31.111 225 134 6 105 326 8 214 3.77e-29 111
MS.gene042162.t1 MTR_3g072260 41.406 128 75 0 9 136 6 133 1.11e-25 100
MS.gene042162.t1 MTR_3g072210 31.053 190 122 5 140 326 55 238 4.93e-25 101
MS.gene042162.t1 MTR_7g072490 27.642 246 117 3 75 319 2 187 1.81e-19 85.5
MS.gene042162.t1 MTR_5g058120 32.716 162 98 3 162 322 4 155 2.65e-19 86.3
MS.gene042162.t1 MTR_7g086790 40.000 120 68 2 76 195 17 132 5.61e-19 84.0
MS.gene042162.t1 MTR_1g098320 44.872 78 43 0 249 326 47 124 4.93e-16 74.3
MS.gene042162.t1 MTR_6g048160 52.113 71 30 1 68 138 22 88 1.71e-15 71.2
MS.gene042162.t1 MTR_5g022510 25.993 277 137 11 45 306 17 240 8.34e-13 68.2
MS.gene042162.t1 MTR_4g114220 42.553 94 44 2 46 139 20 103 1.27e-12 64.7
MS.gene042162.t1 MTR_1g089005 29.371 143 88 3 7 144 1 135 1.41e-12 65.1
MS.gene042162.t1 MTR_4g012865 46.429 56 30 0 29 84 77 132 4.06e-11 60.8
MS.gene042162.t1 MTR_4g031040 27.049 122 74 2 139 260 25 131 8.72e-11 59.7
MS.gene042162.t1 MTR_7g107500 32.653 98 63 2 229 326 3 97 8.84e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042162.t1 AT3G17070 52.980 302 138 2 29 326 38 339 6.94e-110 323
MS.gene042162.t1 AT3G17070 52.344 256 118 2 75 326 21 276 3.33e-87 263
MS.gene042162.t1 AT3G03670 40.000 320 179 5 14 326 8 321 1.75e-73 229
MS.gene042162.t1 AT1G71695 41.042 307 169 7 24 326 41 339 2.75e-73 230
MS.gene042162.t1 AT2G37130 37.987 308 185 5 22 326 23 327 1.34e-72 228
MS.gene042162.t1 AT2G37130 38.591 298 177 5 32 326 2 296 1.65e-71 224
MS.gene042162.t1 AT5G66390 37.725 334 199 5 1 326 1 333 7.19e-71 223
MS.gene042162.t1 AT4G16270 40.256 313 175 6 21 326 41 348 4.36e-70 222
MS.gene042162.t1 AT4G21960 38.333 300 180 4 29 326 31 327 2.42e-69 219
MS.gene042162.t1 AT5G17820 38.095 315 181 4 15 326 10 313 3.44e-69 218
MS.gene042162.t1 AT2G22420 35.312 320 202 3 9 326 3 319 4.21e-69 219
MS.gene042162.t1 AT3G50990 35.821 335 202 5 4 326 8 341 1.17e-68 218
MS.gene042162.t1 AT5G17820 38.095 315 181 4 15 326 63 366 2.38e-68 218
MS.gene042162.t1 AT2G18140 36.170 329 203 4 3 326 9 335 6.46e-68 216
MS.gene042162.t1 AT4G36430 35.738 305 191 3 26 326 27 330 1.41e-66 212
MS.gene042162.t1 AT5G05340 35.667 300 188 2 28 326 29 324 3.62e-65 208
MS.gene042162.t1 AT2G18150 35.922 309 190 5 23 326 31 336 1.10e-64 207
MS.gene042162.t1 AT2G35380 36.765 340 196 6 1 326 1 335 1.70e-64 207
MS.gene042162.t1 AT2G24800 37.049 305 181 4 28 326 30 329 1.73e-64 207
MS.gene042162.t1 AT1G24110 38.033 305 178 5 29 326 22 322 1.89e-64 207
MS.gene042162.t1 AT4G31760 36.513 304 183 3 28 326 28 326 7.09e-64 205
MS.gene042162.t1 AT5G51890 36.420 324 192 6 1 319 1 315 4.84e-63 203
MS.gene042162.t1 AT1G44970 37.748 302 176 5 33 326 49 346 9.45e-63 203
MS.gene042162.t1 AT5G06730 35.691 311 192 4 22 326 26 334 2.15e-62 202
MS.gene042162.t1 AT1G68850 34.421 337 207 7 1 326 2 335 3.37e-62 201
MS.gene042162.t1 AT1G05260 37.386 329 184 11 13 326 4 325 1.01e-61 199
MS.gene042162.t1 AT5G58400 36.213 301 186 3 28 326 29 325 4.21e-60 195
MS.gene042162.t1 AT5G06720 33.841 328 203 5 7 326 12 333 4.67e-60 196
MS.gene042162.t1 AT2G34060 36.066 305 186 7 27 323 40 343 6.24e-60 196
MS.gene042162.t1 AT4G26010 37.000 300 177 6 28 326 21 309 1.36e-59 194
MS.gene042162.t1 AT5G14130 34.824 313 194 4 20 326 22 330 2.10e-59 194
MS.gene042162.t1 AT5G15180 33.939 330 208 5 1 326 6 329 2.74e-59 193
MS.gene042162.t1 AT4G26010 37.000 300 177 6 28 326 49 337 3.14e-59 194
MS.gene042162.t1 AT1G14540 36.093 302 184 6 28 326 20 315 4.43e-59 192
MS.gene042162.t1 AT5G19890 38.154 325 185 8 9 326 12 327 4.91e-59 192
MS.gene042162.t1 AT5G14130 34.824 313 194 4 20 326 63 371 7.52e-59 194
MS.gene042162.t1 AT5G40150 35.430 302 190 3 27 326 30 328 9.24e-59 192
MS.gene042162.t1 AT4G33420 33.962 318 201 4 9 326 17 325 2.23e-58 191
MS.gene042162.t1 AT1G49570 35.333 300 189 2 28 322 47 346 2.41e-58 192
MS.gene042162.t1 AT4G08770 36.156 307 186 5 28 326 23 327 3.43e-58 191
MS.gene042162.t1 AT5G42180 35.312 320 196 7 9 325 5 316 4.09e-58 190
MS.gene042162.t1 AT5G19880 34.639 332 200 6 4 326 6 329 4.35e-58 190
MS.gene042162.t1 AT2G41480 36.111 324 189 7 13 326 13 328 7.32e-58 190
MS.gene042162.t1 AT4G33420 33.962 318 201 4 9 326 64 372 7.68e-58 191
MS.gene042162.t1 AT1G34510 36.667 300 178 6 28 326 21 309 9.05e-58 189
MS.gene042162.t1 AT4G08780 36.482 307 185 5 28 326 23 327 1.53e-57 189
MS.gene042162.t1 AT4G37530 34.615 312 183 8 28 326 26 329 2.44e-57 188
MS.gene042162.t1 AT1G30870 36.275 306 180 6 27 326 49 345 4.39e-57 188
MS.gene042162.t1 AT2G18980 33.882 304 192 4 28 326 24 323 2.93e-56 185
MS.gene042162.t1 AT4G37520 33.441 311 188 7 28 326 26 329 3.03e-56 186
MS.gene042162.t1 AT1G14550 34.884 301 190 4 28 326 25 321 5.39e-56 185
MS.gene042162.t1 AT2G38390 35.179 307 188 5 28 326 30 333 7.39e-56 185
MS.gene042162.t1 AT3G01190 34.768 302 187 5 29 326 26 321 9.31e-56 184
MS.gene042162.t1 AT3G28200 36.482 307 179 7 27 326 19 316 9.75e-56 184
MS.gene042162.t1 AT1G05240 34.000 300 188 4 29 322 26 321 1.31e-55 184
MS.gene042162.t1 AT1G05250 34.000 300 188 4 29 322 26 321 1.31e-55 184
MS.gene042162.t1 AT3G32980 35.048 311 192 5 24 326 26 334 1.50e-55 184
MS.gene042162.t1 AT4G11290 35.714 308 184 8 28 326 24 326 2.35e-55 183
MS.gene042162.t1 AT4G30170 33.882 304 192 5 28 326 26 325 3.47e-55 182
MS.gene042162.t1 AT2G38380 35.505 307 187 5 28 326 30 333 4.79e-55 183
MS.gene042162.t1 AT3G49120 35.179 307 189 5 28 326 31 335 6.71e-55 183
MS.gene042162.t1 AT5G58390 32.188 320 211 3 9 326 1 316 6.01e-54 179
MS.gene042162.t1 AT4G33870 30.548 347 203 4 15 324 54 399 6.43e-54 182
MS.gene042162.t1 AT4G17690 33.115 305 191 3 28 326 25 322 7.52e-54 179
MS.gene042162.t1 AT5G47000 32.635 334 197 6 6 326 12 330 9.38e-54 179
MS.gene042162.t1 AT4G37520 32.797 311 187 8 28 326 26 326 1.20e-53 179
MS.gene042162.t1 AT5G67400 33.119 311 189 6 28 326 26 329 1.51e-53 179
MS.gene042162.t1 AT2G43480 33.226 310 188 6 28 326 34 335 2.74e-53 178
MS.gene042162.t1 AT3G49110 35.505 307 188 5 28 326 32 336 3.03e-53 179
MS.gene042162.t1 AT5G22410 34.650 329 200 9 1 322 1 321 1.36e-52 176
MS.gene042162.t1 AT3G21770 33.887 301 189 7 28 322 28 324 1.90e-52 176
MS.gene042162.t1 AT5G24070 33.548 310 187 6 28 326 34 335 9.56e-52 174
MS.gene042162.t1 AT5G64120 33.779 299 184 5 33 326 39 328 1.05e-50 171
MS.gene042162.t1 AT3G49960 31.629 313 191 7 28 326 26 329 2.82e-50 170
MS.gene042162.t1 AT2G39040 34.202 307 193 6 28 326 45 350 6.84e-50 170
MS.gene042162.t1 AT4G37530 35.472 265 150 8 28 279 26 282 1.65e-48 164
MS.gene042162.t1 AT4G25980 32.268 313 199 6 22 326 19 326 8.81e-48 164
MS.gene042162.t1 AT5G39580 32.615 325 210 5 5 326 1 319 7.99e-47 161
MS.gene042162.t1 AT1G77100 30.938 320 207 7 13 326 8 319 6.26e-45 156
MS.gene042162.t1 AT5G64110 33.887 301 184 6 33 326 38 330 6.78e-43 151
MS.gene042162.t1 AT5G64100 33.232 328 200 8 7 326 15 331 8.21e-43 150
MS.gene042162.t1 AT2G35380 35.833 240 136 5 100 326 13 247 4.88e-42 146
MS.gene042162.t1 AT2G24800 39.521 167 97 1 28 194 30 192 2.28e-35 129
MS.gene042162.t1 AT4G25980 37.714 175 105 2 22 196 64 234 2.03e-34 127
MS.gene042162.t1 AT5G39580 33.906 233 141 4 13 245 9 228 2.90e-33 123
MS.gene042162.t1 AT3G42570 51.402 107 51 1 89 194 41 147 6.93e-28 106
MS.gene042162.t1 AT4G32320 28.195 266 127 9 61 314 115 328 6.95e-18 83.6
MS.gene042162.t1 AT3G09640 28.063 253 125 11 64 306 38 243 7.03e-17 79.3
MS.gene042162.t1 AT3G09640 28.063 253 125 11 64 306 38 243 7.03e-17 79.3

Find 55 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTTTGCAATCAGAAAT+AGG 0.221902 8.3:-1467379 MS.gene042162:CDS
TTGATATGAATTACCTAAAA+TGG 0.242091 8.3:+1467097 None:intergenic
TCTTGCAACTGTGGTTATTA+TGG 0.251545 8.3:-1467786 MS.gene042162:CDS
CATTCCTTTAGATTTGAAAA+TGG 0.281912 8.3:+1467139 None:intergenic
TCGACCAAACTTTCTAAGTT+TGG 0.284525 8.3:+1467698 None:intergenic
AAGAGGAGACAATATGGATT+TGG 0.285987 8.3:-1466620 MS.gene042162:CDS
CTCTGGAGGACCAAGTATTC+AGG 0.331398 8.3:-1467255 MS.gene042162:CDS
AATGATTGTCAAATATTGTT+GGG 0.340608 8.3:+1466518 None:intergenic
GTTTCATGATTGCCAAGTTC+AGG 0.342204 8.3:-1467612 MS.gene042162:intron
GTGTCCAAACTTAGAAAGTT+TGG 0.351235 8.3:-1467702 MS.gene042162:CDS
GTGCACCATCAGCATTTCTA+AGG 0.353910 8.3:-1467640 MS.gene042162:CDS
TGTCATTAGGCACAAATGTT+AGG 0.354137 8.3:+1466545 None:intergenic
AGAGGAGACAATATGGATTT+GGG 0.363098 8.3:-1466619 MS.gene042162:CDS
TTGACAGGTGCACATACATT+AGG 0.373593 8.3:-1466691 MS.gene042162:intron
ACAGATAAGAGGAGACAATA+TGG 0.375221 8.3:-1466626 MS.gene042162:CDS
ATTGTTGGGGTAATGTCATT+AGG 0.385481 8.3:+1466532 None:intergenic
AAACTTTGCAATCAGAAATA+GGG 0.397272 8.3:-1467378 MS.gene042162:CDS
ACAAATGTTAGGTTTGTCAT+AGG 0.409222 8.3:+1466556 None:intergenic
CCAAGTGGAACCTGAATACT+TGG 0.416167 8.3:+1467245 None:intergenic
AGCTCTGAAATAGCTTCTTC+AGG 0.418279 8.3:-1467401 MS.gene042162:CDS
TGTAGTAGTTGTAAGAAAGT+TGG 0.422109 8.3:+1467732 None:intergenic
AAGAACTTCTAGTTCTAAAG+AGG 0.443288 8.3:-1467210 MS.gene042162:CDS
AAGGTATCAGTGTCACTCTC+TGG 0.451748 8.3:-1467272 MS.gene042162:CDS
CTATAGTAATTACCTGAACT+TGG 0.453888 8.3:+1467600 None:intergenic
TAATGATTGTCAAATATTGT+TGG 0.457312 8.3:+1466517 None:intergenic
ATGATGGGAAGAGGTCTGTT+TGG 0.467462 8.3:-1466481 MS.gene042162:CDS
GGACACTGCATAAGCATTGT+TGG 0.470288 8.3:-1466664 MS.gene042162:CDS
ATGGCAATGGGTGCAGTTCG+TGG 0.473467 8.3:+1466433 None:intergenic
TTGTATAATCAACAGATAAG+AGG 0.483057 8.3:-1466637 MS.gene042162:CDS
TCTGATTCTTCTTGCAACTG+TGG 0.497349 8.3:-1467795 MS.gene042162:CDS
TCTGCACAAGATACTTGTCC+TGG 0.497452 8.3:+1467314 None:intergenic
CATTGCCATGAGGTTTGCTA+TGG 0.500754 8.3:-1466419 MS.gene042162:CDS
CCAAGTATTCAGGTTCCACT+TGG 0.502152 8.3:-1467245 MS.gene042162:CDS
CATAGCAAACCTCATGGCAA+TGG 0.528737 8.3:+1466420 None:intergenic
ATAGCAAACCTCATGGCAAT+GGG 0.529814 8.3:+1466421 None:intergenic
TTGTCATAGGAATAACAGTT+GGG 0.530163 8.3:+1466569 None:intergenic
CTTAACAAATGCAGATGAGA+AGG 0.548411 8.3:+1466375 None:intergenic
ATATTAGAAGAAGAATGTCC+AGG 0.558167 8.3:-1467332 MS.gene042162:CDS
ATGATTGTCAAATATTGTTG+GGG 0.561569 8.3:+1466519 None:intergenic
AGAGACATTATGATGGGAAG+AGG 0.566295 8.3:-1466490 MS.gene042162:CDS
TTATTACAGAGACATTATGA+TGG 0.566444 8.3:-1466497 MS.gene042162:CDS
TGGGCATGCTAGTCTTAGTG+AGG 0.572002 8.3:+1466588 None:intergenic
ATATGCAAGGTGAAGTCAGA+AGG 0.575185 8.3:-1466327 MS.gene042162:CDS
TTTGTCATAGGAATAACAGT+TGG 0.577245 8.3:+1466568 None:intergenic
TATTACAGAGACATTATGAT+GGG 0.582479 8.3:-1466496 MS.gene042162:CDS
ACAGTTGCAAGAAGAATCAG+AGG 0.585612 8.3:+1467797 None:intergenic
TCAACTGTTACTGTCGGTGA+AGG 0.593803 8.3:+1467173 None:intergenic
AATGTTCTCACAAATATGCA+AGG 0.613013 8.3:-1466340 MS.gene042162:CDS
AATTCGTCAACTGTTACTGT+CGG 0.617947 8.3:+1467167 None:intergenic
GGTGCACATACATTAGGCGT+TGG 0.625109 8.3:-1466685 MS.gene042162:CDS
CTGATCCATAGCAAACCTCA+TGG 0.639482 8.3:+1466414 None:intergenic
GTATCAGTGTCACTCTCTGG+AGG 0.669514 8.3:-1467269 MS.gene042162:CDS
GATTGTGTCCAACAAAATCG+AGG 0.697177 8.3:+1467436 None:intergenic
ATGAGCCTTAGAAATGCTGA+TGG 0.697496 8.3:+1467635 None:intergenic
GAACTGCACCCATTGCCATG+AGG 0.721829 8.3:-1466429 MS.gene042162:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAGTTCAACTTATTTA+TGG + chr8.3:1467047-1467066 None:intergenic 20.0%
!! AATGATTGTCAAATATTGTT+GGG + chr8.3:1467603-1467622 None:intergenic 20.0%
!! ATAAAATGTCAAATGCTATT+AGG + chr8.3:1467314-1467333 None:intergenic 20.0%
!! TAATGATTGTCAAATATTGT+TGG + chr8.3:1467604-1467623 None:intergenic 20.0%
!! TTAGACAAATATTACAATGT+AGG - chr8.3:1466580-1466599 MS.gene042162:CDS 20.0%
!! TTGATATGAATTACCTAAAA+TGG + chr8.3:1467024-1467043 None:intergenic 20.0%
!!! TTATCCATTTTCAAATCTAA+AGG - chr8.3:1466975-1466994 MS.gene042162:intron 20.0%
! AAACTTTGCAATCAGAAATA+GGG - chr8.3:1466740-1466759 MS.gene042162:intron 25.0%
! ATGATTGTCAAATATTGTTG+GGG + chr8.3:1467602-1467621 None:intergenic 25.0%
! CATTCCTTTAGATTTGAAAA+TGG + chr8.3:1466982-1467001 None:intergenic 25.0%
! TATTACAGAGACATTATGAT+GGG - chr8.3:1467622-1467641 MS.gene042162:CDS 25.0%
! TTATTACAGAGACATTATGA+TGG - chr8.3:1467621-1467640 MS.gene042162:CDS 25.0%
! TTGTATAATCAACAGATAAG+AGG - chr8.3:1467481-1467500 MS.gene042162:intron 25.0%
!!! CTGTTACTATTAATTTTGAC+AGG - chr8.3:1467412-1467431 MS.gene042162:CDS 25.0%
AATGTTCTCACAAATATGCA+AGG - chr8.3:1467778-1467797 MS.gene042162:CDS 30.0%
ACAAATGTTAGGTTTGTCAT+AGG + chr8.3:1467565-1467584 None:intergenic 30.0%
ACCCATAATTCTTGGTAAAA+AGG + chr8.3:1467136-1467155 None:intergenic 30.0%
ATAATTCTTGGTAAAAAGGG+AGG + chr8.3:1467132-1467151 None:intergenic 30.0%
ATATTAGAAGAAGAATGTCC+AGG - chr8.3:1466786-1466805 MS.gene042162:intron 30.0%
CAAAAACCATTGCTTATCTT+AGG + chr8.3:1467390-1467409 None:intergenic 30.0%
CCCATAATTCTTGGTAAAAA+GGG + chr8.3:1467135-1467154 None:intergenic 30.0%
CTAATCCATAATCCATTTCA+GGG - chr8.3:1467235-1467254 MS.gene042162:CDS 30.0%
CTATAGTAATTACCTGAACT+TGG + chr8.3:1466521-1466540 None:intergenic 30.0%
GAAACTTTGCAATCAGAAAT+AGG - chr8.3:1466739-1466758 MS.gene042162:intron 30.0%
GTTGAATTAATTTCCATGCA+GGG - chr8.3:1466651-1466670 MS.gene042162:CDS 30.0%
TCAACAAAACAAACAAAGTG+AGG + chr8.3:1466636-1466655 None:intergenic 30.0%
TCTAATCCATAATCCATTTC+AGG - chr8.3:1467234-1467253 MS.gene042162:CDS 30.0%
TGTAGTAGTTGTAAGAAAGT+TGG + chr8.3:1466389-1466408 None:intergenic 30.0%
TGTTGAATTAATTTCCATGC+AGG - chr8.3:1466650-1466669 MS.gene042162:CDS 30.0%
TTGTCATAGGAATAACAGTT+GGG + chr8.3:1467552-1467571 None:intergenic 30.0%
TTGTTACCTAAGATAAGCAA+TGG - chr8.3:1467381-1467400 MS.gene042162:CDS 30.0%
TTTGTCATAGGAATAACAGT+TGG + chr8.3:1467553-1467572 None:intergenic 30.0%
! CAAATATCTGCTCTTTTTGT+TGG - chr8.3:1467174-1467193 MS.gene042162:CDS 30.0%
! CCCTTTTTACCAAGAATTAT+GGG - chr8.3:1467132-1467151 MS.gene042162:CDS 30.0%
! CCTTTTACACCAAATGAAAA+TGG + chr8.3:1466363-1466382 None:intergenic 30.0%
! TCCCTTTTTACCAAGAATTA+TGG - chr8.3:1467131-1467150 MS.gene042162:CDS 30.0%
!! AAGAACTTCTAGTTCTAAAG+AGG - chr8.3:1466908-1466927 MS.gene042162:intron 30.0%
!!! CCATTTTCATTTGGTGTAAA+AGG - chr8.3:1466360-1466379 MS.gene042162:CDS 30.0%
!!! GGTGTTTTTTATGTCGTTTA+AGG - chr8.3:1466601-1466620 MS.gene042162:CDS 30.0%
!!! TATCATTGTTTTAGCTGCTA+AGG - chr8.3:1466827-1466846 MS.gene042162:intron 30.0%
AAGAGGAGACAATATGGATT+TGG - chr8.3:1467498-1467517 MS.gene042162:intron 35.0%
AAGTTGAACTCATTTCGTCA+GGG - chr8.3:1467052-1467071 MS.gene042162:intron 35.0%
AAGTTTGTGAGTCAAGCAAT+CGG + chr8.3:1466553-1466572 None:intergenic 35.0%
AATTCGTCAACTGTTACTGT+CGG + chr8.3:1466954-1466973 None:intergenic 35.0%
ACAGATAAGAGGAGACAATA+TGG - chr8.3:1467492-1467511 MS.gene042162:intron 35.0%
AGAGGAGACAATATGGATTT+GGG - chr8.3:1467499-1467518 MS.gene042162:intron 35.0%
ATTGTTGGGGTAATGTCATT+AGG + chr8.3:1467589-1467608 None:intergenic 35.0%
CTTAACAAATGCAGATGAGA+AGG + chr8.3:1467746-1467765 None:intergenic 35.0%
GTGTCCAAACTTAGAAAGTT+TGG - chr8.3:1466416-1466435 MS.gene042162:CDS 35.0%
GTGTTCATGAGTTGTATATC+TGG + chr8.3:1467277-1467296 None:intergenic 35.0%
TCGACCAAACTTTCTAAGTT+TGG + chr8.3:1466423-1466442 None:intergenic 35.0%
TCTTGCAACTGTGGTTATTA+TGG - chr8.3:1466332-1466351 MS.gene042162:CDS 35.0%
TGTCATTAGGCACAAATGTT+AGG + chr8.3:1467576-1467595 None:intergenic 35.0%
! AAAAAGGGAGGAAAAAGTGT+TGG + chr8.3:1467120-1467139 None:intergenic 35.0%
! ATATCTGCTCTTTTTGTTGG+TGG - chr8.3:1467177-1467196 MS.gene042162:CDS 35.0%
! CTTGAATCTTTTCTTCCAAG+TGG + chr8.3:1466891-1466910 None:intergenic 35.0%
! TAAGTTGAACTCATTTCGTC+AGG - chr8.3:1467051-1467070 MS.gene042162:intron 35.0%
! TTATGTCGTTTAAGGTTGCT+TGG - chr8.3:1466609-1466628 MS.gene042162:CDS 35.0%
!!! ATGGCTATGCCATTTTCATT+TGG - chr8.3:1466351-1466370 MS.gene042162:CDS 35.0%
!!! CAAGAATCTGTTGCCATTTT+AGG - chr8.3:1467008-1467027 MS.gene042162:intron 35.0%
ACAGTTGCAAGAAGAATCAG+AGG + chr8.3:1466324-1466343 None:intergenic 40.0%
ATAGCAAACCTCATGGCAAT+GGG + chr8.3:1467700-1467719 None:intergenic 40.0%
ATATGCAAGGTGAAGTCAGA+AGG - chr8.3:1467791-1467810 MS.gene042162:CDS 40.0%
ATGAGCCTTAGAAATGCTGA+TGG + chr8.3:1466486-1466505 None:intergenic 40.0%
CAAGTCACACCCATAATTCT+TGG + chr8.3:1467144-1467163 None:intergenic 40.0%
GATTGTGTCCAACAAAATCG+AGG + chr8.3:1466685-1466704 None:intergenic 40.0%
GTTTCATGATTGCCAAGTTC+AGG - chr8.3:1466506-1466525 MS.gene042162:CDS 40.0%
TCTGATTCTTCTTGCAACTG+TGG - chr8.3:1466323-1466342 MS.gene042162:CDS 40.0%
TTGACAGGTGCACATACATT+AGG - chr8.3:1467427-1467446 MS.gene042162:CDS 40.0%
! AGAGACATTATGATGGGAAG+AGG - chr8.3:1467628-1467647 MS.gene042162:CDS 40.0%
! ATGTGATGCCTCGATTTTGT+TGG - chr8.3:1466674-1466693 MS.gene042162:CDS 40.0%
!! AAAAAGTGTTGGTTGCACGT+GGG + chr8.3:1467109-1467128 None:intergenic 40.0%
!! AGCTCTGAAATAGCTTCTTC+AGG - chr8.3:1466717-1466736 MS.gene042162:intron 40.0%
!! TCTAGCCCTGAAATGGATTA+TGG + chr8.3:1467243-1467262 None:intergenic 40.0%
CATAGCAAACCTCATGGCAA+TGG + chr8.3:1467701-1467720 None:intergenic 45.0%
CATGATGTCTAGCCCTGAAA+TGG + chr8.3:1467250-1467269 None:intergenic 45.0%
CCAAGTGGAACCTGAATACT+TGG + chr8.3:1466876-1466895 None:intergenic 45.0%
CTGATCCATAGCAAACCTCA+TGG + chr8.3:1467707-1467726 None:intergenic 45.0%
GTGCACCATCAGCATTTCTA+AGG - chr8.3:1466478-1466497 MS.gene042162:CDS 45.0%
TCAACTGTTACTGTCGGTGA+AGG + chr8.3:1466948-1466967 None:intergenic 45.0%
TCTGCACAAGATACTTGTCC+TGG + chr8.3:1466807-1466826 None:intergenic 45.0%
TGGTGGTTGAGATCACTAAC+TGG - chr8.3:1467194-1467213 MS.gene042162:CDS 45.0%
! AAGGTATCAGTGTCACTCTC+TGG - chr8.3:1466846-1466865 MS.gene042162:intron 45.0%
! ATGATGGGAAGAGGTCTGTT+TGG - chr8.3:1467637-1467656 MS.gene042162:CDS 45.0%
! CCAAGTATTCAGGTTCCACT+TGG - chr8.3:1466873-1466892 MS.gene042162:intron 45.0%
! GGACACTGCATAAGCATTGT+TGG - chr8.3:1467454-1467473 MS.gene042162:intron 45.0%
!! CATTGCCATGAGGTTTGCTA+TGG - chr8.3:1467699-1467718 MS.gene042162:CDS 45.0%
!! GAAAAAGTGTTGGTTGCACG+TGG + chr8.3:1467110-1467129 None:intergenic 45.0%
GGTGCACATACATTAGGCGT+TGG - chr8.3:1467433-1467452 MS.gene042162:CDS 50.0%
! CTCTGGAGGACCAAGTATTC+AGG - chr8.3:1466863-1466882 MS.gene042162:intron 50.0%
! GTATCAGTGTCACTCTCTGG+AGG - chr8.3:1466849-1466868 MS.gene042162:intron 50.0%
!! TGGGCATGCTAGTCTTAGTG+AGG + chr8.3:1467533-1467552 None:intergenic 50.0%
ATGGCAATGGGTGCAGTTCG+TGG + chr8.3:1467688-1467707 None:intergenic 55.0%
GAACTGCACCCATTGCCATG+AGG - chr8.3:1467689-1467708 MS.gene042162:CDS 55.0%
! CGAGGCATCACATCCCTGCA+TGG + chr8.3:1466667-1466686 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 1466306 1467834 1466306 ID=MS.gene042162
chr8.3 mRNA 1466306 1467834 1466306 ID=MS.gene042162.t1;Parent=MS.gene042162
chr8.3 exon 1467613 1467834 1467613 ID=MS.gene042162.t1.exon1;Parent=MS.gene042162.t1
chr8.3 CDS 1467613 1467834 1467613 ID=cds.MS.gene042162.t1;Parent=MS.gene042162.t1
chr8.3 exon 1467111 1467468 1467111 ID=MS.gene042162.t1.exon2;Parent=MS.gene042162.t1
chr8.3 CDS 1467111 1467468 1467111 ID=cds.MS.gene042162.t1;Parent=MS.gene042162.t1
chr8.3 exon 1466306 1466706 1466306 ID=MS.gene042162.t1.exon3;Parent=MS.gene042162.t1
chr8.3 CDS 1466306 1466706 1466306 ID=cds.MS.gene042162.t1;Parent=MS.gene042162.t1
Gene Sequence

>MS.gene042162

ATGGAAATATCTCTTCCTCTGATTCTTCTTGCAACTGTGGTTATTATGGCTATGCCATTTTCATTTGGTGTAAAAGGAAACCAACTTTCTTACAACTACTACAAGAATTCGTGTCCAAACTTAGAAAGTTTGGTCGAGAGAGAATTGATGAGCGTATTCTTGAGAGATATTCGTGCACCATCAGCATTTCTAAGGCTCATGTTTCATGATTGCCAAGTTCAGGTAATTACTATAGCTAGTAGCACCGATTGCTTGACTCACAAACTTAACAATTTTAGACAAATATTACAATGTAGGTGTTTTTTATGTCGTTTAAGGTTGCTTGGACCTCACTTTGTTTGTTTTGTTGAATTAATTTCCATGCAGGGATGTGATGCCTCGATTTTGTTGGACACAATCTACGCTACTCAAAGCTCTGAAATAGCTTCTTCAGGAAACTTTGCAATCAGAAATAGGGAAACAATCAACGACATAAAATCGATATTAGAAGAAGAATGTCCAGGACAAGTATCTTGTGCAGATATCATTGTTTTAGCTGCTAAGGTATCAGTGTCACTCTCTGGAGGACCAAGTATTCAGGTTCCACTTGGAAGAAAAGATTCAAGAACTTCTAGTTCTAAAGAGGCTGATGCTAAGCTTCCTTCACCGACAGTAACAGTTGACGAATTTTTATCCATTTTCAAATCTAAAGGAATGAACATTCAAGAATCTGTTGCCATTTTAGGTAATTCATATCAACCATAAATAAGTTGAACTCATTTCGTCAGGGAAAGTCTCAAAAGTATAAGTTTTACACAATTCCCACGTGCAACCAACACTTTTTCCTCCCTTTTTACCAAGAATTATGGGTGTGACTTGTGAGAAATCTCAAATATCTGCTCTTTTTGTTGGTGGTTGAGATCACTAACTGGAGTAACTATTAGCTTCATCTAATCCATAATCCATTTCAGGGCTAGACATCATGATATCCAGATATACAACTCATGAACACTTATTCTTTAAATTCCTAATAGCATTTGACATTTTATTTTATTTTTTCTTGTCATTTAAAGTGTTATACTAATACAGATAAAAATTGTTACCTAAGATAAGCAATGGTTTTTGATCTGTTACTATTAATTTTGACAGGTGCACATACATTAGGCGTTGGACACTGCATAAGCATTGTTGGCAGATTGTATAATCAACAGATAAGAGGAGACAATATGGATTTGGGTTATGAAACCTCACTAAGACTAGCATGCCCAACTGTTATTCCTATGACAAACCTAACATTTGTGCCTAATGACATTACCCCAACAATATTTGACAATCATTATTACAGAGACATTATGATGGGAAGAGGTCTGTTTGGTATTGACTCGAGCATTTCTAGAGATCCACGAACTGCACCCATTGCCATGAGGTTTGCTATGGATCAGAGCTACTTCTTTGAGACCTTCTCATCTGCATTTGTTAAGCTTTCTGCTAGCAATGTTCTCACAAATATGCAAGGTGAAGTCAGAAGGAAATGCAACCAGCTGAACTAG
Protein sequence

>MS.gene042162.t1

MEISLPLILLATVVIMAMPFSFGVKGNQLSYNYYKNSCPNLESLVERELMSVFLRDIRAPSAFLRLMFHDCQVQGCDASILLDTIYATQSSEIASSGNFAIRNRETINDIKSILEEECPGQVSCADIIVLAAKVSVSLSGGPSIQVPLGRKDSRTSSSKEADAKLPSPTVTVDEFLSIFKSKGMNIQESVAILGAHTLGVGHCISIVGRLYNQQIRGDNMDLGYETSLRLACPTVIPMTNLTFVPNDITPTIFDNHYYRDIMMGRGLFGIDSSISRDPRTAPIAMRFAMDQSYFFETFSSAFVKLSASNVLTNMQGEVRRKCNQLN