AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54705

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54705.t1 MTR_0286s0010 97.015 268 8 0 35 302 38 305 0.0 543
MS.gene54705.t1 MTR_6g008075 97.015 268 8 0 35 302 38 305 0.0 543
MS.gene54705.t1 MTR_8g062780 53.160 269 123 2 35 301 27 294 1.89e-105 311
MS.gene54705.t1 MTR_1g090760 51.111 270 128 3 35 301 32 300 7.83e-99 295
MS.gene54705.t1 MTR_7g029030 46.067 267 139 4 35 301 29 290 4.02e-78 241
MS.gene54705.t1 MTR_5g016010 45.926 270 140 4 34 299 30 297 1.35e-76 238
MS.gene54705.t1 MTR_1g009750 44.981 269 141 5 35 299 31 296 2.61e-74 232
MS.gene54705.t1 MTR_1g101830 45.387 271 139 6 34 301 30 294 1.75e-69 219
MS.gene54705.t1 MTR_4g095450 43.820 267 143 4 35 299 31 292 3.37e-69 219
MS.gene54705.t1 MTR_4g087965 41.758 273 150 6 35 301 46 315 1.69e-68 218
MS.gene54705.t1 MTR_4g127670 43.866 269 142 6 35 299 28 291 4.37e-67 213
MS.gene54705.t1 MTR_1g009750 40.892 269 135 6 35 299 31 279 2.64e-61 198
MS.gene54705.t1 MTR_8g075100 40.741 270 153 5 35 302 30 294 5.87e-59 192
MS.gene54705.t1 MTR_1g038680 41.762 261 143 6 35 289 33 290 2.18e-58 191
MS.gene54705.t1 MTR_5g022870 40.299 268 153 5 35 300 27 289 1.50e-57 188
MS.gene54705.t1 MTR_1g077000 40.299 268 144 6 35 300 43 296 2.26e-56 186
MS.gene54705.t1 MTR_4g122640 40.075 267 154 5 36 300 43 305 4.81e-56 185
MS.gene54705.t1 MTR_4g132490 35.517 290 183 3 35 323 33 319 2.99e-55 183
MS.gene54705.t1 MTR_1g025980 38.433 268 156 6 35 299 28 289 4.27e-55 182
MS.gene54705.t1 MTR_7g086870 40.000 265 148 5 35 299 26 279 5.01e-55 182
MS.gene54705.t1 MTR_4g029190 40.149 269 149 6 34 299 49 308 7.78e-55 182
MS.gene54705.t1 MTR_4g132110 37.918 269 159 4 35 301 36 298 1.15e-54 181
MS.gene54705.t1 MTR_2g084090 37.594 266 157 4 35 299 29 286 4.50e-54 179
MS.gene54705.t1 MTR_5g074970 38.007 271 152 7 35 299 34 294 1.37e-53 179
MS.gene54705.t1 MTR_4g133800 40.613 261 142 8 35 293 45 294 1.79e-53 178
MS.gene54705.t1 MTR_7g072510 40.226 266 149 5 35 299 24 280 1.97e-53 177
MS.gene54705.t1 MTR_3g094650 37.638 271 153 5 35 300 32 291 2.29e-53 178
MS.gene54705.t1 MTR_5g021060 36.296 270 166 5 35 301 34 300 4.73e-53 177
MS.gene54705.t1 MTR_4g030890 38.007 271 158 6 35 301 104 368 6.12e-53 179
MS.gene54705.t1 MTR_4g132110 37.591 274 158 5 35 301 36 303 6.37e-53 177
MS.gene54705.t1 MTR_4g031140 38.376 271 157 6 35 301 32 296 7.73e-53 177
MS.gene54705.t1 MTR_2g437770 37.597 258 146 7 35 289 54 299 1.93e-52 176
MS.gene54705.t1 MTR_2g029800 39.114 271 156 6 35 300 33 299 4.76e-52 175
MS.gene54705.t1 MTR_2g029830 38.828 273 156 7 35 301 32 299 5.34e-52 175
MS.gene54705.t1 MTR_3g072190 36.567 268 162 4 35 302 30 289 5.64e-52 174
MS.gene54705.t1 MTR_7g086820 37.828 267 158 4 35 301 24 282 8.08e-52 174
MS.gene54705.t1 MTR_4g046713 38.235 272 155 8 35 300 31 295 1.08e-51 174
MS.gene54705.t1 MTR_7g107520 38.043 276 157 8 35 305 29 295 1.27e-51 173
MS.gene54705.t1 MTR_7g072480 39.098 266 144 6 35 295 28 280 1.70e-51 173
MS.gene54705.t1 MTR_6g027440 39.209 278 159 6 35 309 25 295 2.06e-51 172
MS.gene54705.t1 MTR_1g086320 39.925 268 148 7 35 294 34 296 2.39e-51 173
MS.gene54705.t1 MTR_2g029815 37.586 290 165 7 24 301 15 300 2.61e-51 173
MS.gene54705.t1 MTR_2g029820 39.338 272 156 7 35 301 33 300 4.78e-51 173
MS.gene54705.t1 MTR_8g076820 35.926 270 167 5 35 301 34 300 9.94e-51 171
MS.gene54705.t1 MTR_2g084080 35.793 271 158 5 35 301 29 287 2.05e-50 170
MS.gene54705.t1 MTR_0155s0040 36.332 289 164 8 15 300 13 284 2.16e-50 170
MS.gene54705.t1 MTR_5g083860 36.226 265 151 5 35 293 35 287 2.80e-50 170
MS.gene54705.t1 MTR_1g086490 38.462 273 152 6 35 294 34 303 4.13e-50 170
MS.gene54705.t1 MTR_4g029200 38.060 268 155 6 35 301 50 307 4.33e-50 170
MS.gene54705.t1 MTR_5g014100 36.364 275 162 6 35 300 30 300 4.66e-50 169
MS.gene54705.t1 MTR_1g115900 40.221 271 148 8 35 301 31 291 1.09e-49 168
MS.gene54705.t1 MTR_2g029560 36.765 272 163 7 35 301 28 295 1.41e-49 169
MS.gene54705.t1 MTR_7g026990 37.313 268 157 5 35 301 35 292 1.91e-49 167
MS.gene54705.t1 MTR_2g008710 37.692 260 152 6 35 292 31 282 4.42e-49 167
MS.gene54705.t1 MTR_3g092990 37.370 289 172 5 10 295 8 290 5.17e-49 167
MS.gene54705.t1 MTR_1g066640 36.330 267 162 4 35 299 31 291 5.29e-49 166
MS.gene54705.t1 MTR_3g466200 35.075 268 163 6 35 299 29 288 5.53e-49 166
MS.gene54705.t1 MTR_2g029750 37.868 272 160 6 35 301 33 300 6.44e-49 167
MS.gene54705.t1 MTR_6g043460 35.273 275 167 6 28 300 32 297 1.22e-48 166
MS.gene54705.t1 MTR_4g029170 35.075 268 164 6 35 300 31 290 1.29e-48 166
MS.gene54705.t1 MTR_7g093370 35.897 273 167 5 35 302 73 342 1.68e-48 167
MS.gene54705.t1 MTR_2g088770 37.405 262 154 7 35 292 30 285 3.42e-48 164
MS.gene54705.t1 MTR_5g049280 35.766 274 165 6 35 301 37 306 6.40e-48 164
MS.gene54705.t1 MTR_1g066710 35.206 267 165 4 35 299 31 291 7.09e-48 164
MS.gene54705.t1 MTR_2g084110 34.686 271 161 5 35 301 29 287 7.41e-48 163
MS.gene54705.t1 MTR_4g083710 36.296 270 159 7 35 299 31 292 7.45e-48 164
MS.gene54705.t1 MTR_3g467600 37.410 278 156 9 35 303 31 299 8.47e-48 163
MS.gene54705.t1 MTR_2g084010 36.220 254 146 5 32 281 26 267 1.36e-47 162
MS.gene54705.t1 MTR_2g084020 35.055 271 160 5 35 301 29 287 1.47e-47 162
MS.gene54705.t1 MTR_5g017860 34.432 273 166 5 35 301 31 296 1.81e-47 162
MS.gene54705.t1 MTR_1g066380 34.831 267 166 4 35 299 31 291 2.12e-47 162
MS.gene54705.t1 MTR_3g466180 37.838 296 165 6 6 300 15 292 4.67e-47 161
MS.gene54705.t1 MTR_3g094670 36.162 271 155 5 35 299 32 290 6.96e-47 161
MS.gene54705.t1 MTR_5g017850 32.890 301 183 6 7 301 9 296 7.61e-47 161
MS.gene54705.t1 MTR_4g029180 35.316 269 164 6 35 301 31 291 8.49e-47 160
MS.gene54705.t1 MTR_2g084000 33.955 268 168 5 35 301 30 289 1.32e-46 160
MS.gene54705.t1 MTR_3g094630 36.364 264 150 5 35 292 32 283 1.45e-46 160
MS.gene54705.t1 MTR_5g074860 37.450 251 143 7 34 280 32 272 2.41e-46 159
MS.gene54705.t1 MTR_1g066680 36.803 269 157 6 35 299 31 290 3.83e-46 159
MS.gene54705.t1 MTR_2g029730 35.889 287 164 8 35 309 29 307 6.77e-46 159
MS.gene54705.t1 MTR_4g125940 37.956 274 155 9 35 300 32 298 1.20e-45 158
MS.gene54705.t1 MTR_2g029740 36.264 273 165 6 34 301 32 300 3.07e-45 157
MS.gene54705.t1 MTR_2g028980 34.098 305 180 9 10 301 4 300 4.68e-45 157
MS.gene54705.t1 MTR_3g105790 33.220 295 179 6 10 300 11 291 6.50e-45 156
MS.gene54705.t1 MTR_2g029830 40.870 230 126 6 78 301 6 231 7.27e-45 155
MS.gene54705.t1 MTR_2g040000 36.000 275 162 6 34 300 32 300 1.32e-44 155
MS.gene54705.t1 MTR_2g029850 34.926 272 168 6 35 301 33 300 2.32e-44 155
MS.gene54705.t1 MTR_2g029860 35.662 272 166 6 35 301 33 300 3.85e-44 154
MS.gene54705.t1 MTR_5g033470 36.101 277 161 8 35 301 77 347 4.34e-44 155
MS.gene54705.t1 MTR_4g074990 35.686 255 150 7 35 285 28 272 5.08e-44 153
MS.gene54705.t1 MTR_2g029910 33.818 275 168 5 35 301 34 302 8.40e-44 154
MS.gene54705.t1 MTR_6g043240 35.273 275 166 6 28 301 38 301 2.01e-43 152
MS.gene54705.t1 MTR_5g074740 37.200 250 143 7 35 280 29 268 2.11e-43 152
MS.gene54705.t1 MTR_5g074760 36.400 250 145 7 35 280 29 268 2.50e-43 152
MS.gene54705.t1 MTR_4g114210 34.965 286 161 8 22 293 3 277 3.94e-43 151
MS.gene54705.t1 MTR_1g054205 36.000 275 162 10 35 301 28 296 5.52e-43 151
MS.gene54705.t1 MTR_5g074710 36.400 250 145 7 35 280 29 268 6.96e-43 150
MS.gene54705.t1 MTR_4g074995 35.581 267 152 7 35 299 28 276 1.31e-42 149
MS.gene54705.t1 MTR_3g072190 36.681 229 138 3 74 302 1 222 1.53e-42 147
MS.gene54705.t1 MTR_3g092990 35.986 289 165 5 10 295 8 279 2.38e-42 149
MS.gene54705.t1 MTR_4g074980 36.087 230 141 4 35 263 29 253 5.48e-42 146
MS.gene54705.t1 MTR_1g022970 33.456 272 172 6 35 301 50 317 1.03e-40 145
MS.gene54705.t1 MTR_4g125940 39.676 247 134 9 62 300 4 243 4.96e-40 142
MS.gene54705.t1 MTR_6g043280 30.132 302 192 7 10 301 10 302 8.16e-40 143
MS.gene54705.t1 MTR_2g099175 36.090 266 157 7 34 293 39 297 9.78e-40 142
MS.gene54705.t1 MTR_2g008160 35.115 262 156 7 35 292 28 279 2.35e-39 141
MS.gene54705.t1 MTR_2g008730 34.231 260 137 5 35 292 31 258 2.70e-38 138
MS.gene54705.t1 MTR_2g067440 32.550 298 167 8 35 302 64 357 1.20e-37 138
MS.gene54705.t1 MTR_4g074980 38.021 192 115 3 35 225 29 217 4.83e-37 134
MS.gene54705.t1 MTR_1g066380 34.978 223 138 3 79 299 6 223 5.55e-37 133
MS.gene54705.t1 MTR_2g078610 32.000 300 169 8 35 302 80 376 2.61e-36 135
MS.gene54705.t1 MTR_2g078280 32.000 300 169 8 35 302 80 376 3.25e-36 134
MS.gene54705.t1 MTR_2g077990 31.667 300 170 8 35 302 80 376 1.81e-35 133
MS.gene54705.t1 MTR_3g105790 35.047 214 132 3 91 300 5 215 6.84e-32 119
MS.gene54705.t1 MTR_0147s0010 30.208 288 164 7 35 301 81 352 7.23e-32 122
MS.gene54705.t1 MTR_2g008160 37.791 172 101 4 35 206 28 193 2.83e-30 114
MS.gene54705.t1 MTR_2g008160 31.418 261 132 7 35 292 28 244 1.99e-29 114
MS.gene54705.t1 MTR_2g067450 34.562 217 134 6 35 247 15 227 3.83e-29 114
MS.gene54705.t1 MTR_3g072210 38.509 161 92 3 143 302 54 208 4.03e-28 109
MS.gene54705.t1 MTR_5g074860 31.076 251 120 7 34 280 32 233 6.17e-27 107
MS.gene54705.t1 MTR_5g074700 36.310 168 96 5 107 271 6 165 2.14e-26 104
MS.gene54705.t1 MTR_7g072490 31.532 222 91 4 78 299 2 162 4.99e-22 92.4
MS.gene54705.t1 MTR_7g086790 42.975 121 64 2 79 199 17 132 2.71e-21 90.1
MS.gene54705.t1 MTR_2g029880 31.677 161 95 4 145 301 9 158 3.66e-19 84.7
MS.gene54705.t1 MTR_3g072260 38.318 107 64 2 35 141 30 134 2.35e-16 75.1
MS.gene54705.t1 MTR_3g107060 25.969 258 128 7 54 301 97 301 6.21e-15 74.7
MS.gene54705.t1 MTR_1g089005 39.655 116 63 2 35 145 19 132 9.15e-15 71.2
MS.gene54705.t1 MTR_5g058120 35.294 136 78 3 164 299 2 127 9.48e-15 73.2
MS.gene54705.t1 MTR_4g061140 28.000 200 100 7 106 300 38 198 7.01e-13 67.4
MS.gene54705.t1 MTR_4g031040 31.707 123 66 3 144 265 26 131 8.69e-13 65.1
MS.gene54705.t1 MTR_4g061140 28.000 200 100 7 106 300 72 232 1.12e-12 67.0
MS.gene54705.t1 MTR_4g061140 28.000 200 100 7 106 300 72 232 1.12e-12 67.4
MS.gene54705.t1 MTR_7g086785 41.096 73 41 1 78 150 4 74 4.42e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54705.t1 AT5G40150 64.286 266 91 2 35 300 36 297 2.16e-130 375
MS.gene54705.t1 AT3G28200 65.543 267 87 2 35 301 25 286 2.08e-129 372
MS.gene54705.t1 AT5G47000 56.929 267 112 2 35 301 37 300 1.15e-109 322
MS.gene54705.t1 AT4G17690 55.805 267 114 2 35 301 30 292 2.65e-105 311
MS.gene54705.t1 AT1G24110 53.558 267 122 2 35 300 26 291 5.10e-103 305
MS.gene54705.t1 AT4G37530 44.981 269 142 4 35 299 31 297 1.36e-77 240
MS.gene54705.t1 AT4G37520 44.610 269 143 4 35 299 31 297 4.29e-76 236
MS.gene54705.t1 AT5G67400 44.649 271 144 4 35 301 31 299 2.42e-75 234
MS.gene54705.t1 AT5G14130 44.404 277 148 4 35 309 36 308 1.91e-74 232
MS.gene54705.t1 AT5G14130 44.404 277 148 4 35 309 77 349 4.14e-74 233
MS.gene54705.t1 AT4G37530 45.635 252 131 4 35 282 31 280 5.81e-74 229
MS.gene54705.t1 AT4G37520 44.610 269 140 5 35 299 31 294 7.28e-74 231
MS.gene54705.t1 AT3G49960 43.494 269 146 4 35 299 31 297 9.97e-72 225
MS.gene54705.t1 AT2G18980 43.123 269 143 5 35 299 29 291 1.14e-69 220
MS.gene54705.t1 AT4G30170 40.892 269 149 5 35 299 31 293 1.63e-65 209
MS.gene54705.t1 AT5G51890 41.758 273 147 7 34 301 29 294 2.30e-63 204
MS.gene54705.t1 AT2G34060 38.235 272 163 3 35 302 46 316 7.60e-62 201
MS.gene54705.t1 AT3G17070 39.568 278 154 8 31 300 37 308 9.12e-60 195
MS.gene54705.t1 AT4G16270 39.437 284 161 8 23 301 43 320 2.28e-59 194
MS.gene54705.t1 AT4G36430 38.351 279 164 6 27 301 26 300 1.80e-57 189
MS.gene54705.t1 AT4G33420 38.246 285 152 7 26 300 24 294 1.13e-56 186
MS.gene54705.t1 AT5G66390 38.790 281 162 7 27 301 27 303 3.94e-56 186
MS.gene54705.t1 AT4G33420 38.246 285 152 7 26 300 71 341 5.15e-56 186
MS.gene54705.t1 AT5G17820 40.741 270 139 8 35 299 28 281 5.62e-56 184
MS.gene54705.t1 AT5G17820 40.741 270 139 8 35 299 81 334 4.25e-55 184
MS.gene54705.t1 AT5G42180 36.986 292 165 8 13 299 11 288 1.06e-54 181
MS.gene54705.t1 AT2G22420 36.996 273 158 6 35 301 27 291 1.38e-54 181
MS.gene54705.t1 AT2G18150 36.630 273 161 6 35 301 40 306 1.97e-54 181
MS.gene54705.t1 AT1G05260 38.314 261 153 6 35 292 30 285 6.02e-54 179
MS.gene54705.t1 AT5G05340 36.531 271 154 5 35 299 34 292 1.63e-53 178
MS.gene54705.t1 AT3G50990 36.900 271 163 6 35 301 45 311 1.91e-52 176
MS.gene54705.t1 AT1G71695 36.704 267 162 4 35 300 48 308 2.08e-52 176
MS.gene54705.t1 AT2G18140 36.162 271 165 6 35 301 39 305 4.26e-52 175
MS.gene54705.t1 AT4G11290 37.050 278 163 8 35 305 29 301 9.41e-52 174
MS.gene54705.t1 AT2G37130 36.296 270 163 5 35 301 3 266 6.08e-51 171
MS.gene54705.t1 AT1G14540 36.466 266 161 5 35 299 25 283 9.05e-51 171
MS.gene54705.t1 AT4G31760 35.793 271 163 5 35 301 33 296 1.49e-50 171
MS.gene54705.t1 AT2G37130 36.296 270 163 5 35 301 34 297 1.53e-50 171
MS.gene54705.t1 AT4G21960 37.175 269 161 4 35 301 35 297 2.13e-50 170
MS.gene54705.t1 AT1G30870 37.175 269 156 6 35 301 55 312 2.55e-50 171
MS.gene54705.t1 AT2G24800 35.926 270 163 4 35 300 35 298 2.01e-49 168
MS.gene54705.t1 AT2G38380 36.029 272 166 6 35 301 35 303 2.11e-49 168
MS.gene54705.t1 AT2G35380 37.681 276 157 7 35 300 34 304 4.43e-49 167
MS.gene54705.t1 AT4G08780 38.462 273 157 8 35 300 28 296 4.59e-49 167
MS.gene54705.t1 AT5G06720 36.861 274 162 8 35 302 36 304 1.13e-48 166
MS.gene54705.t1 AT5G06730 36.029 272 167 6 35 302 37 305 1.13e-48 167
MS.gene54705.t1 AT4G08770 38.095 273 158 8 35 300 28 296 1.38e-48 166
MS.gene54705.t1 AT1G05240 37.354 257 153 5 35 289 30 280 2.19e-48 165
MS.gene54705.t1 AT1G05250 37.354 257 153 5 35 289 30 280 2.19e-48 165
MS.gene54705.t1 AT2G38390 37.132 272 161 7 35 300 35 302 2.30e-48 166
MS.gene54705.t1 AT3G21770 36.397 272 164 7 35 302 33 299 2.90e-48 165
MS.gene54705.t1 AT3G01190 38.077 260 145 7 35 289 30 278 3.26e-48 164
MS.gene54705.t1 AT5G19880 36.727 275 160 6 35 300 29 298 4.83e-48 164
MS.gene54705.t1 AT3G03670 36.397 272 157 6 35 299 27 289 9.05e-48 163
MS.gene54705.t1 AT5G64110 36.923 260 153 6 35 292 38 288 2.33e-47 162
MS.gene54705.t1 AT3G32980 36.264 273 165 6 35 301 35 304 4.91e-47 162
MS.gene54705.t1 AT1G14550 36.567 268 159 7 35 299 30 289 5.51e-47 161
MS.gene54705.t1 AT5G39580 36.000 300 173 9 5 299 2 287 8.55e-47 160
MS.gene54705.t1 AT1G68850 34.532 278 164 8 35 301 34 304 1.73e-46 160
MS.gene54705.t1 AT5G58400 35.531 273 159 7 35 301 34 295 1.88e-46 160
MS.gene54705.t1 AT3G49120 35.531 273 167 6 35 301 36 305 2.14e-46 160
MS.gene54705.t1 AT5G58390 34.909 275 158 7 35 301 25 286 3.06e-46 159
MS.gene54705.t1 AT1G44970 33.910 289 173 8 22 301 37 316 7.04e-46 159
MS.gene54705.t1 AT3G49110 35.531 273 167 6 35 301 37 306 1.41e-45 158
MS.gene54705.t1 AT5G64120 34.211 266 166 6 35 299 39 296 5.12e-45 156
MS.gene54705.t1 AT2G39040 38.760 258 147 7 35 285 50 303 5.40e-45 157
MS.gene54705.t1 AT3G17070 38.696 230 129 6 78 300 21 245 5.89e-45 155
MS.gene54705.t1 AT1G49570 33.784 296 179 7 35 317 52 343 6.07e-45 157
MS.gene54705.t1 AT5G22410 33.333 294 182 8 13 301 11 295 2.00e-44 155
MS.gene54705.t1 AT4G33870 32.013 303 167 5 35 301 72 371 6.89e-44 155
MS.gene54705.t1 AT1G34510 36.704 267 152 7 35 299 26 277 4.80e-43 150
MS.gene54705.t1 AT2G41480 37.121 264 150 7 35 293 33 285 6.92e-43 150
MS.gene54705.t1 AT5G15180 34.672 274 162 8 35 301 36 299 1.06e-42 150
MS.gene54705.t1 AT5G19890 35.165 273 162 8 36 301 35 299 1.16e-42 150
MS.gene54705.t1 AT4G25980 33.824 272 163 8 35 300 30 290 1.60e-41 147
MS.gene54705.t1 AT4G26010 33.582 268 163 7 35 301 26 279 4.38e-41 145
MS.gene54705.t1 AT4G26010 33.582 268 163 7 35 301 54 307 8.60e-41 145
MS.gene54705.t1 AT5G64100 35.385 260 155 7 35 292 41 289 7.59e-40 143
MS.gene54705.t1 AT5G24070 32.082 293 182 7 18 301 21 305 3.35e-37 136
MS.gene54705.t1 AT2G43480 34.420 276 165 8 34 301 38 305 1.43e-36 134
MS.gene54705.t1 AT1G77100 34.981 263 152 9 35 292 28 276 1.57e-35 131
MS.gene54705.t1 AT2G35380 37.129 202 116 4 108 300 17 216 1.85e-33 124
MS.gene54705.t1 AT2G24800 40.244 164 92 3 35 198 35 192 3.57e-31 117
MS.gene54705.t1 AT5G39580 38.424 203 115 5 5 207 2 194 1.75e-30 115
MS.gene54705.t1 AT4G25980 36.527 167 98 5 35 200 75 234 1.80e-26 106
MS.gene54705.t1 AT3G42570 43.956 91 50 1 109 198 57 147 5.95e-16 74.3
MS.gene54705.t1 AT4G32320 26.568 271 130 7 41 301 99 310 1.42e-15 76.6
MS.gene54705.t1 AT4G08390 29.348 184 101 4 126 301 185 347 4.77e-13 69.7
MS.gene54705.t1 AT4G08390 29.348 184 101 4 126 301 186 348 4.83e-13 69.7
MS.gene54705.t1 AT4G08390 29.348 184 101 4 126 301 186 348 4.83e-13 69.7
MS.gene54705.t1 AT4G08390 29.348 184 101 4 126 301 186 348 4.83e-13 69.7
MS.gene54705.t1 AT3G09640 26.500 200 104 6 106 301 73 233 3.99e-12 65.9
MS.gene54705.t1 AT3G09640 26.500 200 104 6 106 301 73 233 3.99e-12 65.9

Find 75 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCAAGATTATTTCTTTA+AGG 0.143575 6.1:+3985451 MS.gene54705:CDS
CAGAATTTACCTAAAGGTTT+AGG 0.165196 6.1:+3985359 MS.gene54705:CDS
TAAACATTATCAAACTTATT+TGG 0.189105 6.1:-3985332 None:intergenic
AGAATTTACCTAAAGGTTTA+GGG 0.281875 6.1:+3985360 MS.gene54705:CDS
TACAACAATTCTTCTGGTTC+TGG 0.286642 6.1:+3985212 MS.gene54705:CDS
TTTAACCCTTCAACAAATCT+AGG 0.286870 6.1:-3985248 None:intergenic
GAAGAAATGGTTGCTTTATC+TGG 0.318442 6.1:+3985140 MS.gene54705:CDS
GATATTTACAACAATTCTTC+TGG 0.318776 6.1:+3985206 MS.gene54705:CDS
TTCAAAACCCCTAAACCTTT+AGG 0.324224 6.1:-3985368 None:intergenic
AGTTTCAATATTCGCGAAAC+GGG 0.324305 6.1:+3985106 MS.gene54705:CDS
CACGTTCAGCTTTGTTGAAA+GGG 0.328180 6.1:-3984833 None:intergenic
AATTCTTCTGGTTCTGGTTC+AGG 0.343705 6.1:+3985218 MS.gene54705:CDS
GACATCAACCTCTCTCTTCC+AGG 0.344076 6.1:+3984861 MS.gene54705:CDS
GTCATTGTCATTGACGGCTT+TGG 0.370495 6.1:-3985077 None:intergenic
CGGCGGCAGTGGTTGGAGAT+TGG 0.387607 6.1:-3984737 None:intergenic
TTATACGGCGGCTTCGTGTA+TGG 0.407096 6.1:+3983001 MS.gene54705:CDS
ATCTGTGTCATTGTCATTGA+CGG 0.409866 6.1:-3985083 None:intergenic
ACGGAGAGTGGCGGCGGCAG+TGG 0.409959 6.1:-3984748 None:intergenic
TCACATTGTAGTGAAATTAG+TGG 0.412518 6.1:+3985182 MS.gene54705:CDS
GTTAGGACAGGAGAGTTCTA+AGG 0.433270 6.1:-3984919 None:intergenic
TCAGAGCAAGAGACAGTGTT+AGG 0.434139 6.1:-3984936 None:intergenic
GAAGAGACGGAGAGTGGCGG+CGG 0.436125 6.1:-3984754 None:intergenic
TTATCTGGTGCTCATACAGT+TGG 0.446715 6.1:+3985155 MS.gene54705:CDS
GACGTGGCGTTGATGTTATA+CGG 0.449836 6.1:+3982986 None:intergenic
TCACGTTCAGCTTTGTTGAA+AGG 0.455448 6.1:-3984834 None:intergenic
TCCACAAAAGGCTTAGTTGA+AGG 0.461477 6.1:-3985416 None:intergenic
CGTCGCAGCCGTTAGGGAGG+AGG 0.467163 6.1:-3984788 None:intergenic
ACGGAGGCGTCGCAGCCGTT+AGG 0.473671 6.1:-3984795 None:intergenic
CGTGATCTTCTTATCATGCT+TGG 0.474261 6.1:+3984978 MS.gene54705:CDS
AGGGGTTGAAGAGAGGAGGA+CGG 0.478008 6.1:-3984814 None:intergenic
TGTTGAAAGGGGTTGAAGAG+AGG 0.484577 6.1:-3984821 None:intergenic
TTAGCAAATCTATCCACAAA+AGG 0.485320 6.1:-3985428 None:intergenic
CTAGGCCGTCGCGACGGCCG+AGG 0.493224 6.1:+3985023 MS.gene54705:CDS
CTCGGCCGTCGCGACGGCCT+AGG 0.497351 6.1:-3985022 None:intergenic
CGGAGGCGTCGCAGCCGTTA+GGG 0.497652 6.1:-3984794 None:intergenic
TCTGTGTCATCTGCCGTTGA+CGG 0.502316 6.1:+3985047 MS.gene54705:CDS
TATAATCCTAGATTTGTTGA+AGG 0.503262 6.1:+3985242 MS.gene54705:CDS
GCAAGAGACAGTGTTAGGAC+AGG 0.508508 6.1:-3984931 None:intergenic
TGAATGATTTGTTCGAATTG+TGG 0.511315 6.1:-3984690 None:intergenic
TAGTTTCAATATTCGCGAAA+CGG 0.511725 6.1:+3985105 MS.gene54705:CDS
AGAGTGGCGGCGGCAGTGGT+TGG 0.514933 6.1:-3984744 None:intergenic
ATGAGGTCAAAGGAGTCTCC+TGG 0.515886 6.1:-3984879 None:intergenic
TTTGTTGCGTCGCTTGATGT+TGG 0.518716 6.1:+3983043 MS.gene54705:CDS
GGCAGTCGTGGAGGAAGAGA+CGG 0.531026 6.1:-3984767 None:intergenic
TGAAAGGGGTTGAAGAGAGG+AGG 0.534695 6.1:-3984818 None:intergenic
ATAATCCTAGATTTGTTGAA+GGG 0.540045 6.1:+3985243 MS.gene54705:CDS
CCACAAAAGGCTTAGTTGAA+GGG 0.545642 6.1:-3985415 None:intergenic
GATCTTCTTATCATGCTTGG+TGG 0.554628 6.1:+3984981 MS.gene54705:CDS
CGTTAGGGAGGAGGCAGTCG+TGG 0.559904 6.1:-3984779 None:intergenic
TGCCTAGCAACATGGTCCGT+CGG 0.561626 6.1:-3985831 None:intergenic
CTTCGAAATGCCTAGCAACA+TGG 0.570347 6.1:-3985839 None:intergenic
GCGTCGCTTGATGTTGGTGT+CGG 0.572511 6.1:+3983049 MS.gene54705:CDS
ACGTTCAGCTTTGTTGAAAG+GGG 0.574965 6.1:-3984832 None:intergenic
GATACGTACGATGAGGTCAA+AGG 0.582070 6.1:-3984889 None:intergenic
CAGAACCTCGGCCGTCGCGA+CGG 0.585003 6.1:-3985028 None:intergenic
CACGACTGCCTCCTCCCTAA+CGG 0.589429 6.1:+3984780 MS.gene54705:CDS
CCTCATTACAGTGTTTACCT+AGG 0.592542 6.1:+3985005 MS.gene54705:CDS
CTCCGACGGACCATGTTGCT+AGG 0.602396 6.1:+3985829 MS.gene54705:CDS
GAATTTACCTAAAGGTTTAG+GGG 0.612906 6.1:+3985361 MS.gene54705:CDS
CTTTGGAAGAAAGCCGTCAA+CGG 0.615992 6.1:-3985060 None:intergenic
AGGCGTCGCAGCCGTTAGGG+AGG 0.621783 6.1:-3984791 None:intergenic
GTGGAGGAAGAGACGGAGAG+TGG 0.623125 6.1:-3984760 None:intergenic
AGGAGTCTCCTGGAAGAGAG+AGG 0.623254 6.1:-3984869 None:intergenic
GTTTCAATATTCGCGAAACG+GGG 0.630647 6.1:+3985107 MS.gene54705:CDS
GGTTGAAGAGAGGAGGACGG+AGG 0.631104 6.1:-3984811 None:intergenic
GAGGAAGAGACGGAGAGTGG+CGG 0.632804 6.1:-3984757 None:intergenic
TAGGGAGGAGGCAGTCGTGG+AGG 0.639200 6.1:-3984776 None:intergenic
CGGCAGATGACACAGAACCT+CGG 0.640173 6.1:-3985040 None:intergenic
AGGACAGGAGAGTTCTAAGG+CGG 0.642727 6.1:-3984916 None:intergenic
GATCACGTGTAGCTGTAGCA+AGG 0.646540 6.1:-3984962 None:intergenic
CCTAGGTAAACACTGTAATG+AGG 0.651273 6.1:-3985005 None:intergenic
TGAATCTGCAAACACTCCGA+CGG 0.664896 6.1:+3985815 MS.gene54705:CDS
GTTTACCTAGGCCGTCGCGA+CGG 0.671402 6.1:+3985017 MS.gene54705:CDS
GAAGGGTTAAAGAAAGCTTG+TGG 0.742356 6.1:+3985260 MS.gene54705:CDS
GTGGCGTTGATGTTATACGG+CGG 0.754046 6.1:+3982989 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATATATATAAAAAA+AGG - chr6.1:3985672-3985691 None:intergenic 0.0%
!! TAATTTAAAAAATAACGATT+TGG - chr6.1:3984254-3984273 None:intergenic 10.0%
!! TTAAGAAAGTAATATAAATT+CGG + chr6.1:3983746-3983765 MS.gene54705:intron 10.0%
!! AGAATTAAATCCTTAAAAAA+AGG - chr6.1:3984017-3984036 None:intergenic 15.0%
!! GAATAAAAGAAATAAGTTAA+GGG + chr6.1:3983860-3983879 MS.gene54705:intron 15.0%
!! GAATAAAAGAATTAAGTTAA+GGG + chr6.1:3983920-3983939 MS.gene54705:intron 15.0%
!! GAATTAAATCCTTAAAAAAA+GGG - chr6.1:3984016-3984035 None:intergenic 15.0%
!! TAAACATTATCAAACTTATT+TGG - chr6.1:3985335-3985354 None:intergenic 15.0%
!! TGAATAAAAGAAATAAGTTA+AGG + chr6.1:3983859-3983878 MS.gene54705:intron 15.0%
!! TGAATAAAAGAATTAAGTTA+AGG + chr6.1:3983919-3983938 MS.gene54705:intron 15.0%
!!! AATGTAAACTTTCTTTTAAT+TGG + chr6.1:3985645-3985664 MS.gene54705:intron 15.0%
!!! ATAATTGTAATTTTTGTTTC+TGG + chr6.1:3985612-3985631 MS.gene54705:intron 15.0%
!!! CTTAATTCTTTTATTCAATT+TGG - chr6.1:3983916-3983935 None:intergenic 15.0%
!!! CTTATTTCTTTTATTCAATT+TGG - chr6.1:3983856-3983875 None:intergenic 15.0%
!!! GATTTATAATTATTGATTTG+AGG + chr6.1:3985726-3985745 MS.gene54705:intron 15.0%
!!! TAATTGTAATTTTTGTTTCT+GGG + chr6.1:3985613-3985632 MS.gene54705:intron 15.0%
!!! TATTTGACGTTATTTTTATA+TGG + chr6.1:3984082-3984101 MS.gene54705:intron 15.0%
!!! TTTTAGAAGAAAAAAAAATG+TGG + chr6.1:3983688-3983707 MS.gene54705:intron 15.0%
!! ATAAAAATGTATGTCAGTAA+GGG - chr6.1:3984152-3984171 None:intergenic 20.0%
!!! AAAATTCCTTTTGATTTTGT+TGG + chr6.1:3983562-3983581 MS.gene54705:intron 20.0%
!!! AAATAACGTCAAATAACTTT+TGG - chr6.1:3984077-3984096 None:intergenic 20.0%
!!! ATAACATTTCCCTTTTTTTA+AGG + chr6.1:3984004-3984023 MS.gene54705:intron 20.0%
!!! ATTTTGTGTTTGTAATCTTT+TGG + chr6.1:3983130-3983149 MS.gene54705:intron 20.0%
!!! TATTTTCAGAATTTACCTAA+AGG + chr6.1:3985353-3985372 MS.gene54705:CDS 20.0%
!!! TTATAATTATTGATTTGAGG+TGG + chr6.1:3985729-3985748 MS.gene54705:intron 20.0%
!!! TTCAAGAAATATTGTTTTTG+TGG + chr6.1:3983499-3983518 MS.gene54705:intron 20.0%
! AAAACTCCAACAAAATCAAA+AGG - chr6.1:3983571-3983590 None:intergenic 25.0%
! AGAATTTACCTAAAGGTTTA+GGG + chr6.1:3985360-3985379 MS.gene54705:CDS 25.0%
! CATAAAAATGTATGTCAGTA+AGG - chr6.1:3984153-3984172 None:intergenic 25.0%
! GATATTTACAACAATTCTTC+TGG + chr6.1:3985206-3985225 MS.gene54705:CDS 25.0%
! GGGATTAAAATTATCACAAT+TGG + chr6.1:3983829-3983848 MS.gene54705:intron 25.0%
! GTTAATAAGCCAAAGATAAA+AGG - chr6.1:3983964-3983983 None:intergenic 25.0%
! TCATTAAAAACAGACAAAGT+TGG - chr6.1:3985302-3985321 None:intergenic 25.0%
! TGTTTGTTTGTAGTAATCTA+AGG - chr6.1:3984667-3984686 None:intergenic 25.0%
!! GGATCAAGATTATTTCTTTA+AGG + chr6.1:3985451-3985470 MS.gene54705:CDS 25.0%
!!! AAAAGGCTAAATTGATTTGT+CGG - chr6.1:3983947-3983966 None:intergenic 25.0%
!!! AAGTAATATAAATTCGGTGT+TGG + chr6.1:3983752-3983771 MS.gene54705:intron 25.0%
!!! ATAATCCTAGATTTGTTGAA+GGG + chr6.1:3985243-3985262 MS.gene54705:CDS 25.0%
!!! ATCTAAGGTTAGTTTTGATT+CGG - chr6.1:3984652-3984671 None:intergenic 25.0%
!!! TATAATCCTAGATTTGTTGA+AGG + chr6.1:3985242-3985261 MS.gene54705:CDS 25.0%
!!! TCAATTTAGCCTTTTATCTT+TGG + chr6.1:3983952-3983971 MS.gene54705:intron 25.0%
!!! TTGGAGTTTTTTTATTTTGC+TGG + chr6.1:3983581-3983600 MS.gene54705:intron 25.0%
CAGAATTTACCTAAAGGTTT+AGG + chr6.1:3985359-3985378 MS.gene54705:CDS 30.0%
GAATTTACCTAAAGGTTTAG+GGG + chr6.1:3985361-3985380 MS.gene54705:CDS 30.0%
GCATGTTATTGAAAATGCTT+TGG - chr6.1:3984346-3984365 None:intergenic 30.0%
TAGTTTCAATATTCGCGAAA+CGG + chr6.1:3985105-3985124 MS.gene54705:CDS 30.0%
TCACATTGTAGTGAAATTAG+TGG + chr6.1:3985182-3985201 MS.gene54705:CDS 30.0%
TGATACAAGATTAGATCTGA+TGG + chr6.1:3983775-3983794 MS.gene54705:intron 30.0%
TTAGCAAATCTATCCACAAA+AGG - chr6.1:3985431-3985450 None:intergenic 30.0%
TTGATCTTTGTTCTTGTTCT+TGG + chr6.1:3985562-3985581 MS.gene54705:intron 30.0%
TTTAACCCTTCAACAAATCT+AGG - chr6.1:3985251-3985270 None:intergenic 30.0%
! ATTGAGATTGATGAAAGTGT+GGG - chr6.1:3984401-3984420 None:intergenic 30.0%
! ATTTCTATTTTGCAGGCAAT+TGG + chr6.1:3983296-3983315 MS.gene54705:intron 30.0%
! GACTAAGGTTTGATGATTTA+GGG + chr6.1:3983411-3983430 MS.gene54705:intron 30.0%
! TACCTTTTCTCTAATGACAA+TGG - chr6.1:3984044-3984063 None:intergenic 30.0%
!! AGGTTTTGTGCTTTGAATTT+CGG + chr6.1:3983351-3983370 MS.gene54705:intron 30.0%
!! ATTGTGTGTGTTGTTTAGTT+TGG + chr6.1:3983233-3983252 MS.gene54705:intron 30.0%
!! CAATGTTTTTGATGTTGTTG+AGG - chr6.1:3984583-3984602 None:intergenic 30.0%
!! GAATCGTATTTCTATTTTGC+AGG + chr6.1:3983289-3983308 MS.gene54705:intron 30.0%
!! TGAATGATTTGTTCGAATTG+TGG - chr6.1:3984693-3984712 None:intergenic 30.0%
!! TGGTGGTGAATTTTTATTCA+AGG + chr6.1:3983622-3983641 MS.gene54705:intron 30.0%
!! TTGTGTGTGTTGTTTAGTTT+GGG + chr6.1:3983234-3983253 MS.gene54705:intron 30.0%
!!! ATTGTTGTTGTGTTTTTTGG+GGG - chr6.1:3984540-3984559 None:intergenic 30.0%
!!! CATTGTTGTTGTGTTTTTTG+GGG - chr6.1:3984541-3984560 None:intergenic 30.0%
!!! CCATTGTTGTTGTGTTTTTT+GGG - chr6.1:3984542-3984561 None:intergenic 30.0%
!!! GTTTGGTTTTTATAGGACTA+AGG + chr6.1:3983396-3983415 MS.gene54705:intron 30.0%
!!! TTTTGTGGATAGATTTGCTA+AGG + chr6.1:3985430-3985449 MS.gene54705:CDS 30.0%
AAACCTGCAGAACACAATAA+GGG - chr6.1:3983380-3983399 None:intergenic 35.0%
AATGTTATCTTGTGCTCTCA+AGG - chr6.1:3983992-3984011 None:intergenic 35.0%
ACTATGTTGTGAGGATGAAT+AGG + chr6.1:3983161-3983180 MS.gene54705:intron 35.0%
AGTTTCAATATTCGCGAAAC+GGG + chr6.1:3985106-3985125 MS.gene54705:CDS 35.0%
ATTTCTTGAAGCAAATCTCC+AGG - chr6.1:3983489-3983508 None:intergenic 35.0%
CACCATTGTCATTAGAGAAA+AGG + chr6.1:3984039-3984058 MS.gene54705:intron 35.0%
CCCAAAAAACACAACAACAA+TGG + chr6.1:3984539-3984558 MS.gene54705:intron 35.0%
CTGCAAAAAACAACAACTCA+CGG - chr6.1:3983333-3983352 None:intergenic 35.0%
GATTAGAAGAAGATGTGATC+AGG + chr6.1:3985535-3985554 MS.gene54705:intron 35.0%
GATTGAGATTGATGAAAGTG+TGG - chr6.1:3984402-3984421 None:intergenic 35.0%
TTCAAAACCCCTAAACCTTT+AGG - chr6.1:3985371-3985390 None:intergenic 35.0%
! AGTCTTTTGAATGTTCAGAC+TGG + chr6.1:3985500-3985519 MS.gene54705:intron 35.0%
! ATCTGTGTCATTGTCATTGA+CGG - chr6.1:3985086-3985105 None:intergenic 35.0%
! GAAGAAATGGTTGCTTTATC+TGG + chr6.1:3985140-3985159 MS.gene54705:CDS 35.0%
! GGACTAAGGTTTGATGATTT+AGG + chr6.1:3983410-3983429 MS.gene54705:intron 35.0%
! TTTTGAATGTTCAGACTGGT+AGG + chr6.1:3985504-3985523 MS.gene54705:intron 35.0%
!! TACAACAATTCTTCTGGTTC+TGG + chr6.1:3985212-3985231 MS.gene54705:CDS 35.0%
!! TTGTTCTTGGTGTTGTTCTT+GGG + chr6.1:3985575-3985594 MS.gene54705:intron 35.0%
!!! ATCCAACGGTCTGTTTTTTT+AGG + chr6.1:3983807-3983826 MS.gene54705:intron 35.0%
!!! GCCATTGTTGTTGTGTTTTT+TGG - chr6.1:3984543-3984562 None:intergenic 35.0%
!!! GGGTTTTGAAATCTGATCAT+GGG + chr6.1:3985381-3985400 MS.gene54705:CDS 35.0%
!!! GGTTTTGTTGAGGATGAAAA+GGG - chr6.1:3984474-3984493 None:intergenic 35.0%
!!! GTTTGTAATCTTTTGGTTCG+TGG + chr6.1:3983137-3983156 MS.gene54705:intron 35.0%
!!! TCCAACGGTCTGTTTTTTTA+GGG + chr6.1:3983808-3983827 MS.gene54705:intron 35.0%
!!! TCTGCAGGTTTGGTTTTTAT+AGG + chr6.1:3983389-3983408 MS.gene54705:intron 35.0%
!!! TTGTTGTTGTGTTTTTTGGG+GGG - chr6.1:3984539-3984558 None:intergenic 35.0%
AAAATGCTTTGGCAGCATTG+AGG - chr6.1:3984335-3984354 None:intergenic 40.0%
AACCTGCAGAACACAATAAG+GGG - chr6.1:3983379-3983398 None:intergenic 40.0%
AATGTTCAGACTGGTAGGAA+GGG + chr6.1:3985509-3985528 MS.gene54705:intron 40.0%
AGAAGAGCAGAAAATGTGCT+TGG + chr6.1:3983441-3983460 MS.gene54705:intron 40.0%
ATTGGGTTCTGTTGTGAGTT+TGG + chr6.1:3983085-3983104 MS.gene54705:intron 40.0%
CAAACCTGCAGAACACAATA+AGG - chr6.1:3983381-3983400 None:intergenic 40.0%
CCACAAAAGGCTTAGTTGAA+GGG - chr6.1:3985418-3985437 None:intergenic 40.0%
CCTAGGTAAACACTGTAATG+AGG - chr6.1:3985008-3985027 None:intergenic 40.0%
CCTCATTACAGTGTTTACCT+AGG + chr6.1:3985005-3985024 MS.gene54705:CDS 40.0%
CGTGATCTTCTTATCATGCT+TGG + chr6.1:3984978-3984997 MS.gene54705:CDS 40.0%
CTTATTGTGTTCTGCAGGTT+TGG + chr6.1:3983379-3983398 MS.gene54705:intron 40.0%
GAAAATGTGCTTGGATTGAG+AGG + chr6.1:3983450-3983469 MS.gene54705:intron 40.0%
GAAGGGTTAAAGAAAGCTTG+TGG + chr6.1:3985260-3985279 MS.gene54705:CDS 40.0%
GATCTTCTTATCATGCTTGG+TGG + chr6.1:3984981-3985000 MS.gene54705:CDS 40.0%
GTTCTGTTGTGAGTTTGGAT+CGG + chr6.1:3983090-3983109 MS.gene54705:intron 40.0%
GTTTCAATATTCGCGAAACG+GGG + chr6.1:3985107-3985126 MS.gene54705:CDS 40.0%
TCCACAAAAGGCTTAGTTGA+AGG - chr6.1:3985419-3985438 None:intergenic 40.0%
TGAAAAGTGAAGAGGAGTGA+AGG - chr6.1:3984514-3984533 None:intergenic 40.0%
TGAGACTTGTGTCGTGAAAT+TGG + chr6.1:3983187-3983206 MS.gene54705:intron 40.0%
TTATCTGGTGCTCATACAGT+TGG + chr6.1:3985155-3985174 MS.gene54705:CDS 40.0%
! AAATGCTTTGGCAGCATTGA+GGG - chr6.1:3984334-3984353 None:intergenic 40.0%
! AGATTGATGAAAGTGTGGGA+TGG - chr6.1:3984397-3984416 None:intergenic 40.0%
! GCAGGCAATTGGTGAATTTT+TGG + chr6.1:3983307-3983326 MS.gene54705:intron 40.0%
! GGGTTTTACGGTTGAAGAAA+TGG + chr6.1:3985127-3985146 MS.gene54705:CDS 40.0%
! TGATTTGAGGTGGATTTCGA+GGG + chr6.1:3985739-3985758 MS.gene54705:intron 40.0%
! TGGAGATTGGATCTGTTTTG+AGG - chr6.1:3984727-3984746 None:intergenic 40.0%
! TTGATTTGAGGTGGATTTCG+AGG + chr6.1:3985738-3985757 MS.gene54705:intron 40.0%
!! AATTCTTCTGGTTCTGGTTC+AGG + chr6.1:3985218-3985237 MS.gene54705:CDS 40.0%
!! ACGTTCAGCTTTGTTGAAAG+GGG - chr6.1:3984835-3984854 None:intergenic 40.0%
!! CACGTTCAGCTTTGTTGAAA+GGG - chr6.1:3984836-3984855 None:intergenic 40.0%
!! CTTGTTCTTGGTGTTGTTCT+TGG + chr6.1:3985574-3985593 MS.gene54705:intron 40.0%
!! TCACGTTCAGCTTTGTTGAA+AGG - chr6.1:3984837-3984856 None:intergenic 40.0%
!! TGTTCTTGGTGTTGTTCTTG+GGG + chr6.1:3985576-3985595 MS.gene54705:intron 40.0%
!!! AGGTTAGTTTTGATTCGGAG+AGG - chr6.1:3984647-3984666 None:intergenic 40.0%
!!! CCAACGGTCTGTTTTTTTAG+GGG + chr6.1:3983809-3983828 MS.gene54705:intron 40.0%
!!! CGTGAGTTGTTGTTTTTTGC+AGG + chr6.1:3983331-3983350 MS.gene54705:intron 40.0%
!!! GATGTTGGTGTCGGTTTTTA+CGG + chr6.1:3983058-3983077 MS.gene54705:CDS 40.0%
!!! GGGGTTTTGAAATCTGATCA+TGG + chr6.1:3985380-3985399 MS.gene54705:CDS 40.0%
!!! GGGTTTTGTTGAGGATGAAA+AGG - chr6.1:3984475-3984494 None:intergenic 40.0%
!!! GTTTTGATTCGGAGAGGTTA+AGG - chr6.1:3984641-3984660 None:intergenic 40.0%
AAACAGACCGTTGGATTACG+AGG - chr6.1:3983803-3983822 None:intergenic 45.0%
AACAGACCGTTGGATTACGA+GGG - chr6.1:3983802-3983821 None:intergenic 45.0%
AAGAGGAGTGAAGGAAAGTG+AGG - chr6.1:3984505-3984524 None:intergenic 45.0%
AGAGGAAATAGCTGTGTTCC+TGG + chr6.1:3983468-3983487 MS.gene54705:intron 45.0%
AGTGAAGGAAAGTGAGGATG+AGG - chr6.1:3984499-3984518 None:intergenic 45.0%
CCCCTAAAAAAACAGACCGT+TGG - chr6.1:3983812-3983831 None:intergenic 45.0%
CTTCGAAATGCCTAGCAACA+TGG - chr6.1:3985842-3985861 None:intergenic 45.0%
CTTGTGTCGTGAAATTGGCT+TGG + chr6.1:3983192-3983211 MS.gene54705:intron 45.0%
GAATGTTCAGACTGGTAGGA+AGG + chr6.1:3985508-3985527 MS.gene54705:intron 45.0%
GATACGTACGATGAGGTCAA+AGG - chr6.1:3984892-3984911 None:intergenic 45.0%
GGAGTGTAGTGATGAGATGA+TGG + chr6.1:3983602-3983621 MS.gene54705:intron 45.0%
GTCATTGTCATTGACGGCTT+TGG - chr6.1:3985080-3985099 None:intergenic 45.0%
GTGAAGGAAAGTGAGGATGA+GGG - chr6.1:3984498-3984517 None:intergenic 45.0%
GTTAGGACAGGAGAGTTCTA+AGG - chr6.1:3984922-3984941 None:intergenic 45.0%
GTTCGTGGAACTATGTTGTG+AGG + chr6.1:3983152-3983171 MS.gene54705:intron 45.0%
TCAGAGCAAGAGACAGTGTT+AGG - chr6.1:3984939-3984958 None:intergenic 45.0%
TGAAGGAAAGTGAGGATGAG+GGG - chr6.1:3984497-3984516 None:intergenic 45.0%
TGAATCTGCAAACACTCCGA+CGG + chr6.1:3985815-3985834 MS.gene54705:CDS 45.0%
TGTTGAAAGGGGTTGAAGAG+AGG - chr6.1:3984824-3984843 None:intergenic 45.0%
TTTGTTGCGTCGCTTGATGT+TGG + chr6.1:3983043-3983062 MS.gene54705:CDS 45.0%
! AATGCTTTGGCAGCATTGAG+GGG - chr6.1:3984333-3984352 None:intergenic 45.0%
! AGTTTGGATCGGACTAGAGT+TGG + chr6.1:3983101-3983120 MS.gene54705:intron 45.0%
! ATTCGCGAAACGGGGTTTTA+CGG + chr6.1:3985115-3985134 MS.gene54705:CDS 45.0%
! CCCTTCAACTAAGCCTTTTG+TGG + chr6.1:3985415-3985434 MS.gene54705:CDS 45.0%
! CTTTGGAAGAAAGCCGTCAA+CGG - chr6.1:3985063-3985082 None:intergenic 45.0%
! GTGTAGTGATGAGATGATGG+TGG + chr6.1:3983605-3983624 MS.gene54705:intron 45.0%
! TCGGTTTTTACGGCGTGATT+GGG + chr6.1:3983068-3983087 MS.gene54705:CDS 45.0%
!! CGGTTTTGATACGTACGATG+AGG - chr6.1:3984899-3984918 None:intergenic 45.0%
!! GTTGTTCTTGGGGTTTGTTG+TGG + chr6.1:3985586-3985605 MS.gene54705:intron 45.0%
!!! TTTCATATTTTTATTTTATT+AGG + chr6.1:3985691-3985710 MS.gene54705:intron 5.0%
AAGGAAAGTGAGGATGAGGG+GGG - chr6.1:3984495-3984514 None:intergenic 50.0%
AGTAGGGCTGTATCTTGGGT+TGG - chr6.1:3984368-3984387 None:intergenic 50.0%
ATGAGGTCAAAGGAGTCTCC+TGG - chr6.1:3984882-3984901 None:intergenic 50.0%
ATGGTCGAAAGTAGAGAGCG+TGG + chr6.1:3985762-3985781 MS.gene54705:intron 50.0%
CTCCCCTTATTGTGTTCTGC+AGG + chr6.1:3983374-3983393 MS.gene54705:intron 50.0%
CTGGAGTAGGGCTGTATCTT+GGG - chr6.1:3984372-3984391 None:intergenic 50.0%
GAAGGAAAGTGAGGATGAGG+GGG - chr6.1:3984496-3984515 None:intergenic 50.0%
GACATCAACCTCTCTCTTCC+AGG + chr6.1:3984861-3984880 MS.gene54705:CDS 50.0%
GATCACGTGTAGCTGTAGCA+AGG - chr6.1:3984965-3984984 None:intergenic 50.0%
GATGGACCCTCGTAATCCAA+CGG + chr6.1:3983793-3983812 MS.gene54705:intron 50.0%
GCAAGAGACAGTGTTAGGAC+AGG - chr6.1:3984934-3984953 None:intergenic 50.0%
GGGGGGTTTGAAAAGTGAAG+AGG - chr6.1:3984522-3984541 None:intergenic 50.0%
TCTGTGTCATCTGCCGTTGA+CGG + chr6.1:3985047-3985066 MS.gene54705:CDS 50.0%
TGAAAGGGGTTGAAGAGAGG+AGG - chr6.1:3984821-3984840 None:intergenic 50.0%
TGAGGATGAAAAGGGACACG+TGG - chr6.1:3984466-3984485 None:intergenic 50.0%
TTATACGGCGGCTTCGTGTA+TGG + chr6.1:3983001-3983020 MS.gene54705:CDS 50.0%
! AAAGTAGAGAGCGTGGTGGA+GGG + chr6.1:3985769-3985788 MS.gene54705:intron 50.0%
! ATGAAAGTGTGGGATGGAGC+TGG - chr6.1:3984391-3984410 None:intergenic 50.0%
! TTGAGGTGGATTTCGAGGGA+TGG + chr6.1:3985743-3985762 MS.gene54705:intron 50.0%
!! AGGACAGGAGAGTTCTAAGG+CGG - chr6.1:3984919-3984938 None:intergenic 50.0%
!! GTCGGTTTTTACGGCGTGAT+TGG + chr6.1:3983067-3983086 MS.gene54705:CDS 50.0%
AGGAGTCTCCTGGAAGAGAG+AGG - chr6.1:3984872-3984891 None:intergenic 55.0%
AGGGGTTGAAGAGAGGAGGA+CGG - chr6.1:3984817-3984836 None:intergenic 55.0%
CGGCAGATGACACAGAACCT+CGG - chr6.1:3985043-3985062 None:intergenic 55.0%
GCGTCGCTTGATGTTGGTGT+CGG + chr6.1:3983049-3983068 MS.gene54705:CDS 55.0%
GCTGGAGTAGGGCTGTATCT+TGG - chr6.1:3984373-3984392 None:intergenic 55.0%
GGATGAAAAGGGACACGTGG+CGG - chr6.1:3984463-3984482 None:intergenic 55.0%
TGCCTAGCAACATGGTCCGT+CGG - chr6.1:3985834-3985853 None:intergenic 55.0%
TGTGGGATGGAGCTGGAGTA+GGG - chr6.1:3984384-3984403 None:intergenic 55.0%
! GAAAGTAGAGAGCGTGGTGG+AGG + chr6.1:3985768-3985787 MS.gene54705:intron 55.0%
! GAGTGTGGTGCGTTGATCAC+GGG - chr6.1:3984441-3984460 None:intergenic 55.0%
! GGAGTGTGGTGCGTTGATCA+CGG - chr6.1:3984442-3984461 None:intergenic 55.0%
! GTCGAAAGTAGAGAGCGTGG+TGG + chr6.1:3985765-3985784 MS.gene54705:intron 55.0%
!!! GGATGAGGGGGGTTTTGTTG+AGG - chr6.1:3984484-3984503 None:intergenic 55.0%
CACGACTGCCTCCTCCCTAA+CGG + chr6.1:3984780-3984799 MS.gene54705:CDS 60.0%
CTCCGACGGACCATGTTGCT+AGG + chr6.1:3985829-3985848 MS.gene54705:CDS 60.0%
GAGGAAGAGACGGAGAGTGG+CGG - chr6.1:3984760-3984779 None:intergenic 60.0%
GGCAGTCGTGGAGGAAGAGA+CGG - chr6.1:3984770-3984789 None:intergenic 60.0%
GGTTGAAGAGAGGAGGACGG+AGG - chr6.1:3984814-3984833 None:intergenic 60.0%
GTGGAGGAAGAGACGGAGAG+TGG - chr6.1:3984763-3984782 None:intergenic 60.0%
GTGTGGGATGGAGCTGGAGT+AGG - chr6.1:3984385-3984404 None:intergenic 60.0%
GTTTACCTAGGCCGTCGCGA+CGG + chr6.1:3985017-3985036 MS.gene54705:CDS 60.0%
CGGCGGCAGTGGTTGGAGAT+TGG - chr6.1:3984740-3984759 None:intergenic 65.0%
CGTTAGGGAGGAGGCAGTCG+TGG - chr6.1:3984782-3984801 None:intergenic 65.0%
GAAGAGACGGAGAGTGGCGG+CGG - chr6.1:3984757-3984776 None:intergenic 65.0%
TAGGGAGGAGGCAGTCGTGG+AGG - chr6.1:3984779-3984798 None:intergenic 65.0%
TGGTGGAGGGCTGTGGTGCT+AGG + chr6.1:3985782-3985801 MS.gene54705:intron 65.0%
! AAGGGACACGTGGCGGAGTG+TGG - chr6.1:3984456-3984475 None:intergenic 65.0%
AGAGTGGCGGCGGCAGTGGT+TGG - chr6.1:3984747-3984766 None:intergenic 70.0%
CAGAACCTCGGCCGTCGCGA+CGG - chr6.1:3985031-3985050 None:intergenic 70.0%
CGTCGCAGCCGTTAGGGAGG+AGG - chr6.1:3984791-3984810 None:intergenic 70.0%
! AGGCGTCGCAGCCGTTAGGG+AGG - chr6.1:3984794-3984813 None:intergenic 70.0%
! GAGAGCGTGGTGGAGGGCTG+TGG + chr6.1:3985775-3985794 MS.gene54705:intron 70.0%
!! ACGGAGGCGTCGCAGCCGTT+AGG - chr6.1:3984798-3984817 None:intergenic 70.0%
!! CGGAGGCGTCGCAGCCGTTA+GGG - chr6.1:3984797-3984816 None:intergenic 70.0%
ACGGAGAGTGGCGGCGGCAG+TGG - chr6.1:3984751-3984770 None:intergenic 75.0%
! CTAGGCCGTCGCGACGGCCG+AGG + chr6.1:3985023-3985042 MS.gene54705:CDS 80.0%
! CTCGGCCGTCGCGACGGCCT+AGG - chr6.1:3985025-3985044 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 3982998 3985878 3982998 ID=MS.gene54705
chr6.1 mRNA 3982998 3985878 3982998 ID=MS.gene54705.t1;Parent=MS.gene54705
chr6.1 exon 3982998 3983097 3982998 ID=MS.gene54705.t1.exon1;Parent=MS.gene54705.t1
chr6.1 CDS 3982998 3983097 3982998 ID=cds.MS.gene54705.t1;Parent=MS.gene54705.t1
chr6.1 exon 3984670 3985472 3984670 ID=MS.gene54705.t1.exon2;Parent=MS.gene54705.t1
chr6.1 CDS 3984670 3985472 3984670 ID=cds.MS.gene54705.t1;Parent=MS.gene54705.t1
chr6.1 exon 3985804 3985878 3985804 ID=MS.gene54705.t1.exon3;Parent=MS.gene54705.t1
chr6.1 CDS 3985804 3985878 3985804 ID=cds.MS.gene54705.t1;Parent=MS.gene54705.t1
Gene Sequence

>MS.gene54705

ATGTTATACGGCGGCTTCGTGTATGGATTCGCAGCTGTTGTGATGTTTGTTGCGTCGCTTGATGTTGGTGTCGGTTTTTACGGCGTGATTGGGTTCTGTTGTGAGTTTGGATCGGACTAGAGTTGGTTGTTGATTTTGTGTTTGTAATCTTTTGGTTCGTGGAACTATGTTGTGAGGATGAATAGGTTTTGAGACTTGTGTCGTGAAATTGGCTTGGCTGTGAAAGATTGTTGTTATTGTGTGTGTTGTTTAGTTTGGGAAGAATAGCGATTGAAAGATGAGAATTCTTGTGAATCGTATTTCTATTTTGCAGGCAATTGGTGAATTTTTGGCCGTGAGTTGTTGTTTTTTGCAGGTTTTGTGCTTTGAATTTCGGCTCCCCTTATTGTGTTCTGCAGGTTTGGTTTTTATAGGACTAAGGTTTGATGATTTAGGGTTTGTTAAGAAGAGCAGAAAATGTGCTTGGATTGAGAGGAAATAGCTGTGTTCCTGGAGATTTGCTTCAAGAAATATTGTTTTTGTGGATTCTATTTTCTTGTTGTTTGTTTCAGTTTGATTTTGAAAAAAATTCCTTTTGATTTTGTTGGAGTTTTTTTATTTTGCTGGAGTGTAGTGATGAGATGATGGTGGTGAATTTTTATTCAAGGTTGTTGTAATTTGTGTGTTATGTTGTGTTTCTTTGAATTTGTATTTTAGAAGAAAAAAAAATGTGGAAAAATGTTTATAGATTATATGAAGAAGATGAAGATTAAGAAAGTAATATAAATTCGGTGTTGGTGATACAAGATTAGATCTGATGGACCCTCGTAATCCAACGGTCTGTTTTTTTAGGGGATTAAAATTATCACAATTGGACCAAATTGAATAAAAGAAATAAGTTAAGGGACTTGTTTGACAGACTTTAAACTTATGAGACCAAATTGAATAAAAGAATTAAGTTAAGGGACCGACAAATCAATTTAGCCTTTTATCTTTGGCTTATTAACTTGTGCCTTGAGAGCACAAGATAACATTTCCCTTTTTTTAAGGATTTAATTCTCTCACCATTGTCATTAGAGAAAAGGTATTTCAACAATCCAAAAGTTATTTGACGTTATTTTTATATGGTTGTTAGTGTAATAATAGTTTTTCTCTTTTTTCAGACAAAATAACCCTTACTGACATACATTTTTATGCAATGTTTTAAAAATTGTCACATTTTAATTATTCAAATATCACTTCTCTTATCATAACTCTAAATCACAAACAATCTACCAAATCGTTATTTTTTAAATTAGAGTTTAACTTTCAATCGACTTATTTCAAAAGTTGAACGATAGACTAATATGATGTCCCCTCAATGCTGCCAAAGCATTTTCAATAACATGCCAACCCAAGATACAGCCCTACTCCAGCTCCATCCCACACTTTCATCAATCTCAATCTAACACAAGCACAAATCCCGTGATCAACGCACCACACTCCGCCACGTGTCCCTTTTCATCCTCAACAAAACCCCCCTCATCCTCACTTTCCTTCACTCCTCTTCACTTTTCAAACCCCCCAAAAAACACAACAACAATGGCAGCAACAACAAAAACAACCTCAACAACATCAAAAACATTGTTGTCATTGTTTTTCTTCTTCAACATCATCATTAACCTTAACCTCTCCGAATCAAAACTAACCTTAGATTACTACAAACAAACATGTCCACAATTCGAACAAATCATTCAACAAACAGTAACCTCAAAACAGATCCAATCTCCAACCACTGCCGCCGCCACTCTCCGTCTCTTCCTCCACGACTGCCTCCTCCCTAACGGCTGCGACGCCTCCGTCCTCCTCTCTTCAACCCCTTTCAACAAAGCTGAACGTGACAACGACATCAACCTCTCTCTTCCAGGAGACTCCTTTGACCTCATCGTACGTATCAAAACCGCCTTAGAACTCTCCTGTCCTAACACTGTCTCTTGCTCTGACATCCTTGCTACAGCTACACGTGATCTTCTTATCATGCTTGGTGGTCCTCATTACAGTGTTTACCTAGGCCGTCGCGACGGCCGAGGTTCTGTGTCATCTGCCGTTGACGGCTTTCTTCCAAAGCCGTCAATGACAATGACACAGATAGTTTCAATATTCGCGAAACGGGGTTTTACGGTTGAAGAAATGGTTGCTTTATCTGGTGCTCATACAGTTGGACTTTCACATTGTAGTGAAATTAGTGGAGATATTTACAACAATTCTTCTGGTTCTGGTTCAGGTTATAATCCTAGATTTGTTGAAGGGTTAAAGAAAGCTTGTGGTGATTATAAGAAGAATCCAACTTTGTCTGTTTTTAATGATATTATGACACCAAATAAGTTTGATAATGTTTATTTTCAGAATTTACCTAAAGGTTTAGGGGTTTTGAAATCTGATCATGGGTTGTTTAGTGACCCTTCAACTAAGCCTTTTGTGGATAGATTTGCTAAGGATCAAGATTATTTCTTTAAGGTTTTTGCTAGTTCAATGCAAAAGCTTAGTCTTTTGAATGTTCAGACTGGTAGGAAGGGTGAGATTAGAAGAAGATGTGATCAGGTTAATTGATCTTTGTTCTTGTTCTTGGTGTTGTTCTTGGGGTTTGTTGTGGATTATAATTGTAATTTTTGTTTCTGGGTTTGATAAAAATGTAAACTTTCTTTTAATTGGTCCTTTTTTTATATATATAAATTTTTCATATTTTTATTTTATTAGGACATGATAGTAAGATTTATAATTATTGATTTGAGGTGGATTTCGAGGGATGGTCGAAAGTAGAGAGCGTGGTGGAGGGCTGTGGTGCTAGGTCTCTGATAGTGAATCTGCAAACACTCCGACGGACCATGTTGCTAGGCATTTCGAAGTTGAAGTTAGTGAGTGA
Protein sequence

>MS.gene54705.t1

MLYGGFVYGFAAVVMFVASLDVGVGFYGVIGFCYYYKQTCPQFEQIIQQTVTSKQIQSPTTAAATLRLFLHDCLLPNGCDASVLLSSTPFNKAERDNDINLSLPGDSFDLIVRIKTALELSCPNTVSCSDILATATRDLLIMLGGPHYSVYLGRRDGRGSVSSAVDGFLPKPSMTMTQIVSIFAKRGFTVEEMVALSGAHTVGLSHCSEISGDIYNNSSGSGSGYNPRFVEGLKKACGDYKKNPTLSVFNDIMTPNKFDNVYFQNLPKGLGVLKSDHGLFSDPSTKPFVDRFAKDQDYFFKVSDSESANTPTDHVARHFEVEVSE