AlfalfaGEDB | MS.gene042565

M. sativa cultivar XinJiangDaYe / MS.gene042565

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042565.t1	GAU15862.1	29.7	192	79	2	35	172	76	265	9.90E-08	67

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042565.t1	Q8VYD2	30.2	106	73	1	38	143	72	176	7.9e-06	52.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042565.t1	A0A392QAS1	40.1	137	72	4	35	163	19	153	2.4e-11	78.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene042565.t1	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene019998	MS.gene042565	PPI
MS.gene019999	MS.gene042565	PPI
MS.gene042565	MS.gene65210	PPI
MS.gene65210	MS.gene042565	PPI
MS.gene66944	MS.gene042565	PPI
MS.gene75952	MS.gene042565	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042565.t1	MTR_3g070120	31.646	158	94	4	28	174	146	300	4.49e-13	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 38 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTGGATTTGGAGCGTGCA+CGG	0.556576	6.2:+21630195	MS.gene042565:CDS
ACAAGAGTTGATTGGGGAAT+CGG	0.415419	6.2:+21630121	MS.gene042565:CDS
AGAGTTGGATGAAATGTGGA+AGG	0.591400	6.2:+21630151	MS.gene042565:CDS
AGATCATTATAGAATTTAGG+AGG	0.583496	6.2:-21630059	None:intergenic
AGTTGATTGGGGAATCGGAT+CGG	0.606498	6.2:+21630126	MS.gene042565:CDS
ATATGAGAACATGAAGAAAG+AGG	0.508111	6.2:+21630022	MS.gene042565:CDS
ATCCTCTTTCTAAGCTGCCC+TGG	0.495595	6.2:-21629981	None:intergenic
ATTCTATAATGATCTTGAGC+AGG	0.511151	6.2:+21630067	MS.gene042565:CDS
ATTTGGGGACAAGAGTTGAT+TGG	0.406484	6.2:+21630113	MS.gene042565:CDS
CACCAGGGCAGCTTAGAAAG+AGG	0.573849	6.2:+21629979	MS.gene042565:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGAGAACATGAAGAAAG+AGG	+	chr6.2:21630022-21630041	MS.gene042565:CDS	30.0%
ATTCTATAATGATCTTGAGC+AGG	+	chr6.2:21630067-21630086	MS.gene042565:CDS	30.0%
GTCATTTCTAAGTTATTGCA+AGG	+	chr6.2:21630239-21630258	MS.gene042565:CDS	30.0%
GTTTGATGTTTGCTTCTTTA+AGG	-	chr6.2:21629814-21629833	None:intergenic	30.0%
TTACCTTTCTCACAAGATTT+GGG	+	chr6.2:21630097-21630116	MS.gene042565:CDS	30.0%
TTTACCTTTCTCACAAGATT+TGG	+	chr6.2:21630096-21630115	MS.gene042565:CDS	30.0%
TACCTTTCTCACAAGATTTG+GGG	+	chr6.2:21630098-21630117	MS.gene042565:CDS	35.0%
AGAGTTGGATGAAATGTGGA+AGG	+	chr6.2:21630151-21630170	MS.gene042565:CDS	40.0%
CTAAGAAGCCATTGAGAATG+AGG	-	chr6.2:21629872-21629891	None:intergenic	40.0%
GACGAAATCCTCATTCTCAA+TGG	+	chr6.2:21629861-21629880	MS.gene042565:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	21629747	21630277	21629747	ID=MS.gene042565
chr6.2	mRNA	21629747	21630277	21629747	ID=MS.gene042565.t1;Parent=MS.gene042565
chr6.2	exon	21629747	21630277	21629747	ID=MS.gene042565.t1.exon1;Parent=MS.gene042565.t1
chr6.2	CDS	21629747	21630277	21629747	ID=cds.MS.gene042565.t1;Parent=MS.gene042565.t1

Gene Sequence

>MS.gene042565

ATGGCAAAGAAATCAAGTTGTTCTTCTTCATCCCAAAATCCAAAACAAGAGAAACCCTCTTCTTCCTTAAAGAAGCAAACATCAAACTCACGTAAGAAAACCTTCACTTTCGATGACGAAATCCTCATTCTCAATGGCTTCTTAGATTTCAAATCCAATTTGGGTCAAAATGCAATGACAGATTACACACTTTTTTATAACTCTGTGAAAGATTTGCTTACTGTGAAAACCACACCAGGGCAGCTTAGAAAGAGGATATGGAAGTTAAAACAAAAATATGAGAACATGAAGAAAGAGGAAAACCAAAAATTTCCTCCTAAATTCTATAATGATCTTGAGCAGGAAATAATTTACCTTTCTCACAAGATTTGGGGACAAGAGTTGATTGGGGAATCGGATCGGATAGAGTTGGATGAAATGTGGAAGGAATTGAAAGTTCAAGAGCCGGAATTGGATTTGGAGCGTGCACGGTTAATTAAGGACTCGATTGACGTCATTTCTAAGTTATTGCAAGGATCATCTTCGTCTTAG

Protein sequence

>MS.gene042565.t1

MAKKSSCSSSSQNPKQEKPSSSLKKQTSNSRKKTFTFDDEILILNGFLDFKSNLGQNAMTDYTLFYNSVKDLLTVKTTPGQLRKRIWKLKQKYENMKKEENQKFPPKFYNDLEQEIIYLSHKIWGQELIGESDRIELDEMWKELKVQEPELDLERARLIKDSIDVISKLLQGSSSS