AlfalfaGEDB | MS.gene65210

M. sativa cultivar XinJiangDaYe / MS.gene65210

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65210.t1	XP_022930845.1	32.3	133	87	2	39	171	187	316	2.20E-07	65.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65210.t1	A0A0A0K1N4	32.6	135	88	2	39	171	191	324	2.7e-07	65.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene65210.t1	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene019998	MS.gene65210	PPI
MS.gene019999	MS.gene65210	PPI
MS.gene042565	MS.gene65210	PPI
MS.gene65210	MS.gene042565	PPI
MS.gene66944	MS.gene65210	PPI
MS.gene75952	MS.gene65210	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65210.t1	MTR_3g070120	32.911	158	92	4	29	175	146	300	7.84e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 38 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGGCAGCTTAGAAAG+AGG	0.580040	6.4:+6884758	MS.gene65210:CDS
AATTGGATTTGGAGCGTGCA+CGG	0.556576	6.4:+6884974	MS.gene65210:CDS
AGAGTTGGATGAAATGTGGA+GGG	0.623431	6.4:+6884930	MS.gene65210:CDS
AGATCATTATAGAATCTAGG+AGG	0.675424	6.4:-6884838	None:intergenic
AGCTTAGAAAGAGGATCTGG+AGG	0.623043	6.4:+6884767	MS.gene65210:CDS
AGTTGACTGAGGAATCGAAT+CGG	0.535931	6.4:+6884905	MS.gene65210:CDS
ATATGAGAACATGAAGAAAG+AGG	0.508111	6.4:+6884801	MS.gene65210:CDS
ATTCTATAATGATCTTGAGC+AGG	0.520209	6.4:+6884846	MS.gene65210:CDS
CTAAGAAGCCATTGAGAATA+AGG	0.247836	6.4:-6884648	None:intergenic
CTTAGATTTCAAATCCAAAT+TGG	0.175377	6.4:+6884666	MS.gene65210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATCATTATAGAATCTAGG+AGG	-	chr6.4:6884841-6884860	None:intergenic	30.0%
ATATGAGAACATGAAGAAAG+AGG	+	chr6.4:6884801-6884820	MS.gene65210:CDS	30.0%
ATTCTATAATGATCTTGAGC+AGG	+	chr6.4:6884846-6884865	MS.gene65210:CDS	30.0%
GTCATTTCTAAGTTATTGCA+AGG	+	chr6.4:6885018-6885037	MS.gene65210:CDS	30.0%
GTTTGATGTTTGCTTCTTTA+AGG	-	chr6.4:6884593-6884612	None:intergenic	30.0%
TCCTTCACAGAGTTATAAAA+AGG	-	chr6.4:6884718-6884737	None:intergenic	30.0%
TTACCTTTCTCACAAGATTT+GGG	+	chr6.4:6884876-6884895	MS.gene65210:CDS	30.0%
TTAGTGTGAAACCTAAACAA+GGG	+	chr6.4:6884743-6884762	MS.gene65210:CDS	30.0%
TTTACCTTTCTCACAAGATT+TGG	+	chr6.4:6884875-6884894	MS.gene65210:CDS	30.0%
CTAAGAAGCCATTGAGAATA+AGG	-	chr6.4:6884651-6884670	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	6884523	6885056	6884523	ID=MS.gene65210
chr6.4	mRNA	6884523	6885056	6884523	ID=MS.gene65210.t1;Parent=MS.gene65210
chr6.4	exon	6884523	6885056	6884523	ID=MS.gene65210.t1.exon1;Parent=MS.gene65210.t1
chr6.4	CDS	6884523	6885056	6884523	ID=cds.MS.gene65210.t1;Parent=MS.gene65210.t1

Gene Sequence

>MS.gene65210

ATGGCAAAGAAATCAAGTTGTTCTTCTTCTTCATCCCAAAATCCAAAACAAGAGAAACCCTCTTCTTCCTTAAAGAAGCAAACATCAAACTCACGTAAGAAAACCTTCACTTTCGATGACGAAATCCTTATTCTCAATGGCTTCTTAGATTTCAAATCCAAATTGGGTCAAAATGCAATGACAGATTACACTCCTTTTTATAACTCTGTGAAGGATTTGCTTAGTGTGAAACCTAAACAAGGGCAGCTTAGAAAGAGGATCTGGAGGTTAACACAAAAATATGAGAACATGAAGAAAGAGGAAAACCAAAAATTTCCTCCTAGATTCTATAATGATCTTGAGCAGGAAATAATTTACCTTTCTCACAAGATTTGGGGACAAGAGTTGACTGAGGAATCGAATCGGGTAGAGTTGGATGAAATGTGGAGGGAATTGAAAGTTCAAGAGCCGGAATTGGATTTGGAGCGTGCACGGTTAATTAAGGACTCGATTGACGTCATTTCTAAGTTATTGCAAGGATCATCTTCGTCTTAG

Protein sequence

>MS.gene65210.t1

MAKKSSCSSSSSQNPKQEKPSSSLKKQTSNSRKKTFTFDDEILILNGFLDFKSKLGQNAMTDYTPFYNSVKDLLSVKPKQGQLRKRIWRLTQKYENMKKEENQKFPPRFYNDLEQEIIYLSHKIWGQELTEESNRVELDEMWRELKVQEPELDLERARLIKDSIDVISKLLQGSSSS