AlfalfaGEDB | MS.gene75952

M. sativa cultivar XinJiangDaYe / MS.gene75952

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75952.t1	GAU15862.1	29.7	192	79	2	35	172	76	265	7.60E-08	67.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75952.t1	A0A392QAS1	40.1	137	72	4	35	163	19	153	1.8e-11	79.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene75952.t1	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene019998	MS.gene75952	PPI
MS.gene019999	MS.gene75952	PPI
MS.gene66944	MS.gene75952	PPI
MS.gene75952	MS.gene65210	PPI
MS.gene75952	MS.gene042565	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75952.t1	MTR_3g070120	31.646	158	94	4	28	174	146	300	4.28e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 38 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTGGATTTGGAGCGTGCA+CGG	0.556576	6.4:+4434126	MS.gene75952:CDS
ACAAGAGTTGATTGGGGAAT+CGG	0.415419	6.4:+4434052	MS.gene75952:CDS
AGAGTTGGATGAAATGTGGA+AGG	0.591400	6.4:+4434082	MS.gene75952:CDS
AGATCATTATAGAATCTAGG+AGG	0.675424	6.4:-4433990	None:intergenic
AGTTGATTGGGGAATCGGAT+CGG	0.606498	6.4:+4434057	MS.gene75952:CDS
ATATGAGAACATGAAGAAAG+AGG	0.508111	6.4:+4433953	MS.gene75952:CDS
ATCCTCTTTCTAAGCTGCCC+TGG	0.495595	6.4:-4433912	None:intergenic
ATTCTATAATGATCTTGAGC+AGG	0.520209	6.4:+4433998	MS.gene75952:CDS
ATTTGGGGACAAGAGTTGAT+TGG	0.406484	6.4:+4434044	MS.gene75952:CDS
CACCAGGGCAGCTTAGAAAG+AGG	0.573849	6.4:+4433910	MS.gene75952:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATCATTATAGAATCTAGG+AGG	-	chr6.4:4433993-4434012	None:intergenic	30.0%
ATATGAGAACATGAAGAAAG+AGG	+	chr6.4:4433953-4433972	MS.gene75952:CDS	30.0%
ATTCTATAATGATCTTGAGC+AGG	+	chr6.4:4433998-4434017	MS.gene75952:CDS	30.0%
GTCATTTCTAAGTTATTGCA+AGG	+	chr6.4:4434170-4434189	MS.gene75952:CDS	30.0%
GTTTGATGTTTGCTTCTTTA+AGG	-	chr6.4:4433745-4433764	None:intergenic	30.0%
TTACCTTTCTCACAAGATTT+GGG	+	chr6.4:4434028-4434047	MS.gene75952:CDS	30.0%
TTTACCTTTCTCACAAGATT+TGG	+	chr6.4:4434027-4434046	MS.gene75952:CDS	30.0%
TACCTTTCTCACAAGATTTG+GGG	+	chr6.4:4434029-4434048	MS.gene75952:CDS	35.0%
AGAGTTGGATGAAATGTGGA+AGG	+	chr6.4:4434082-4434101	MS.gene75952:CDS	40.0%
CTAAGAAGCCATTGAGAATG+AGG	-	chr6.4:4433803-4433822	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	4433678	4434208	4433678	ID=MS.gene75952
chr6.4	mRNA	4433678	4434208	4433678	ID=MS.gene75952.t1;Parent=MS.gene75952
chr6.4	exon	4433678	4434208	4433678	ID=MS.gene75952.t1.exon1;Parent=MS.gene75952.t1
chr6.4	CDS	4433678	4434208	4433678	ID=cds.MS.gene75952.t1;Parent=MS.gene75952.t1

Gene Sequence

>MS.gene75952

ATGGCAAAGAAATCAAGTTGTTCTTCTTCATCCCAAAATCCAAAACAAGAGAAACCCTCTTCTTCCTTAAAGAAGCAAACATCAAACTCACGTAAGAAAACCTTCACTTTCGATGACGAAATCCTCATTCTCAATGGCTTCTTAGATTTCAAATCCAATTTGGGTCAAAATGCAATGACAGATTACACACTTTTTTATAACTCTGTGAAAGATTTGCTTACTGTGAAAACCACACCAGGGCAGCTTAGAAAGAGGATATGGAAGTTAAAACAAAAATATGAGAACATGAAGAAAGAGGAAAACCAAAAATTTCCTCCTAGATTCTATAATGATCTTGAGCAGGAAATAATTTACCTTTCTCACAAGATTTGGGGACAAGAGTTGATTGGGGAATCGGATCGGATAGAGTTGGATGAAATGTGGAAGGAATTGAAAGTTCAAGAGCCGGAATTGGATTTGGAGCGTGCACGGTTAATTAAGGACTCGATTGACGTCATTTCTAAGTTATTGCAAGGATCATCTTCGTCTTAG

Protein sequence

>MS.gene75952.t1

MAKKSSCSSSSQNPKQEKPSSSLKKQTSNSRKKTFTFDDEILILNGFLDFKSNLGQNAMTDYTLFYNSVKDLLTVKTTPGQLRKRIWKLKQKYENMKKEENQKFPPRFYNDLEQEIIYLSHKIWGQELIGESDRIELDEMWKELKVQEPELDLERARLIKDSIDVISKLLQGSSSS