AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042694

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042694.t1 MTR_0194s0040 90.323 248 7 4 1 245 1 234 1.04e-157 437
MS.gene042694.t1 MTR_4g129850 62.376 202 70 2 43 238 15 216 3.17e-88 260
MS.gene042694.t1 MTR_4g129860 65.217 184 62 1 57 238 34 217 4.39e-85 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042694.t1 AT1G26160 70.168 238 56 4 15 240 17 251 5.09e-114 327
MS.gene042694.t1 AT2G23820 70.286 175 52 0 65 239 80 254 1.66e-89 265
MS.gene042694.t1 AT1G26160 64.583 192 53 4 15 194 17 205 8.12e-80 239
MS.gene042694.t1 AT2G23820 69.620 158 48 0 65 222 80 237 7.73e-78 235

Find 63 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAGTTTCAAACTGAAAT+AGG 0.229767 5.2:-45311472 MS.gene042694:CDS
CATACTCCAACCACAGTTCT+TGG 0.247596 5.2:+45312666 None:intergenic
TGAAAACAATTCTTCTTTAG+AGG 0.265718 5.2:-45312645 MS.gene042694:CDS
CTCATTGCTTCTGATATTCC+TGG 0.268380 5.2:-45313518 MS.gene042694:CDS
AACAAAATGTGCCAAGTTCT+TGG 0.268598 5.2:-45312808 MS.gene042694:CDS
AACCCATCCTTTCCTCTTTG+TGG 0.273114 5.2:+45313604 None:intergenic
ACAAGCACTGGAATATGAAA+TGG 0.360466 5.2:-45311810 MS.gene042694:CDS
TGGGTTAATCATGGGATTAA+AGG 0.371640 5.2:-45313587 MS.gene042694:CDS
CAACTACGCTCCTCTCGTTA+TGG 0.382582 5.2:-45313805 MS.gene042694:CDS
AAACTGAAATAGGTAAAAGT+TGG 0.400138 5.2:-45311462 MS.gene042694:CDS
ATTGTCTCAATAGCTATTGT+AGG 0.413224 5.2:-45312895 MS.gene042694:intron
GGGTTAATCATGGGATTAAA+GGG 0.440585 5.2:-45313586 MS.gene042694:CDS
TTAAAGCTTCCTGCTCCATT+CGG 0.449281 5.2:+45312830 None:intergenic
GGAGGAGGAGGAGGTGTGAG+AGG 0.460553 5.2:+45313755 None:intergenic
AGGAAAGGATGGGTTAATCA+TGG 0.468444 5.2:-45313596 MS.gene042694:CDS
ATCGATAGCAGAGGAGGAGG+AGG 0.471179 5.2:+45313734 None:intergenic
TCATCCCTCCACCAAGAACT+TGG 0.474015 5.2:+45312797 None:intergenic
TCAAAGCCATACGGTACATA+TGG 0.474924 5.2:+45313546 None:intergenic
AACTGAAATAGGTAAAAGTT+GGG 0.477183 5.2:-45311461 MS.gene042694:CDS
TTGTCTCAATAGCTATTGTA+GGG 0.482982 5.2:-45312894 MS.gene042694:intron
TGAAATGATTCTACAAGCAC+TGG 0.492894 5.2:-45311822 MS.gene042694:CDS
TGAAAAGAGCCGAATGGAGC+AGG 0.493928 5.2:-45312839 MS.gene042694:CDS
GATAGCAGAGGAGGAGGAGG+AGG 0.495854 5.2:+45313737 None:intergenic
CAAGCACTGGAATATGAAAT+GGG 0.501459 5.2:-45311809 MS.gene042694:intron
ACATACCTTCTGCAATATCA+TGG 0.513774 5.2:+45313378 None:intergenic
GAGGAGGAGGAGGTGTGAGA+GGG 0.516567 5.2:+45313756 None:intergenic
ATGTGCCAAGTTCTTGGTGG+AGG 0.521274 5.2:-45312802 MS.gene042694:CDS
TGCAGAGCATGGAAAAGTAC+TGG 0.522727 5.2:-45311607 MS.gene042694:intron
TTAATAATTACGCAAGCAGT+CGG 0.524958 5.2:-45313902 MS.gene042694:CDS
AAAATCGATAGCAGAGGAGG+AGG 0.525616 5.2:+45313731 None:intergenic
AACCTTTCTCTACTCAATCC+AGG 0.530432 5.2:+45313500 None:intergenic
TTCCTGGATTGAGTAGAGAA+AGG 0.531245 5.2:-45313502 MS.gene042694:intron
ACCATCTGATGGTGTGCCTA+AGG 0.532689 5.2:-45312863 MS.gene042694:CDS
GAGAGCATACCTTGAGAGTG+TGG 0.537102 5.2:+45313697 None:intergenic
GAGAAAATCGATAGCAGAGG+AGG 0.543157 5.2:+45313728 None:intergenic
ACGGTACATATGGTCAGCTA+TGG 0.543472 5.2:+45313556 None:intergenic
TAACGAGAGGAGCGTAGTTG+CGG 0.548111 5.2:+45313808 None:intergenic
GGAAAGGATGGGTTAATCAT+GGG 0.554187 5.2:-45313595 MS.gene042694:CDS
AAAATGTGCCAAGTTCTTGG+TGG 0.580446 5.2:-45312805 MS.gene042694:CDS
AGCTGACCATATGTACCGTA+TGG 0.583476 5.2:-45313552 MS.gene042694:CDS
CACTCTCTGCCACACTCTCA+AGG 0.588274 5.2:-45313706 MS.gene042694:intron
CTCGTCCATGATATTGCAGA+AGG 0.591615 5.2:-45313383 MS.gene042694:intron
GTTCTTGGTGGAGGGATGAG+AGG 0.593011 5.2:-45312793 MS.gene042694:intron
AGACCACAAAGAGGAAAGGA+TGG 0.598959 5.2:-45313607 MS.gene042694:CDS
TAGTTGCGGAGAAGAACAAA+GGG 0.603756 5.2:+45313822 None:intergenic
CACCACTGCATCATCATCAA+CGG 0.612278 5.2:-45313869 MS.gene042694:CDS
GTGTAGACCACAAAGAGGAA+AGG 0.612615 5.2:-45313611 MS.gene042694:intron
GTAGTTGCGGAGAAGAACAA+AGG 0.624490 5.2:+45313821 None:intergenic
GCCTTAGGCACACCATCAGA+TGG 0.628508 5.2:+45312862 None:intergenic
TGAGATCCAAGAACTGTGGT+TGG 0.629105 5.2:-45312672 MS.gene042694:CDS
GGGGATATAACACCATCTGA+TGG 0.638298 5.2:-45312874 MS.gene042694:CDS
AGTGAGAAAATCGATAGCAG+AGG 0.638772 5.2:+45313725 None:intergenic
CGCCGTTGATGATGATGCAG+TGG 0.639668 5.2:+45313867 None:intergenic
TAAGGCTGAAAAGAGCCGAA+TGG 0.640673 5.2:-45312845 MS.gene042694:CDS
GACCACAAAGAGGAAAGGAT+GGG 0.643435 5.2:-45313606 MS.gene042694:CDS
TGAGTGACATCAAAGCCATA+CGG 0.663318 5.2:+45313537 None:intergenic
GGTTAATCATGGGATTAAAG+GGG 0.672063 5.2:-45313585 MS.gene042694:CDS
TGTCTCAATAGCTATTGTAG+GGG 0.685024 5.2:-45312893 MS.gene042694:intron
TGTGCCAAGTTCTTGGTGGA+GGG 0.685831 5.2:-45312801 MS.gene042694:CDS
GTATTGTGTAGACCACAAAG+AGG 0.700403 5.2:-45313616 MS.gene042694:intron
TGTGAACGAACCATAACGAG+AGG 0.701189 5.2:+45313795 None:intergenic
CACTGCATCATCATCAACGG+CGG 0.717600 5.2:-45313866 MS.gene042694:CDS
CTGATGAGATCCAAGAACTG+TGG 0.731755 5.2:-45312676 MS.gene042694:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTATTTCTTAATAAAT+TGG - chr5.2:45312286-45312305 MS.gene042694:intron 10.0%
!! AAAAAAATAAAAAGCAAACA+TGG + chr5.2:45313104-45313123 None:intergenic 15.0%
!! AAAAAATAAAAAGCAAACAT+GGG + chr5.2:45313103-45313122 None:intergenic 15.0%
!! AAATAAAGATAAAAGGAATT+TGG - chr5.2:45312370-45312389 MS.gene042694:intron 15.0%
!!! AATTTTTTGTTTTGTATTCA+GGG - chr5.2:45313825-45313844 MS.gene042694:CDS 15.0%
!!! ATGTCTAAAATAAAGATAAA+AGG - chr5.2:45312363-45312382 MS.gene042694:intron 15.0%
!!! TAATTTTTTGTTTTGTATTC+AGG - chr5.2:45313824-45313843 MS.gene042694:CDS 15.0%
!!! TATTTTTTAGCATTACAAAA+CGG + chr5.2:45313669-45313688 None:intergenic 15.0%
!! TAGATCTGTAATATGAAAAT+TGG - chr5.2:45313430-45313449 MS.gene042694:intron 20.0%
!!! AATTTGGAACATTAAAAACT+TGG - chr5.2:45312906-45312925 MS.gene042694:intron 20.0%
!!! TGATTTTGAAGATAATATGA+AGG - chr5.2:45312931-45312950 MS.gene042694:intron 20.0%
!!! TTTTCTTCTTGAAATGATTT+CGG + chr5.2:45313885-45313904 None:intergenic 20.0%
! AAAAATTATGTGACTGACAA+AGG + chr5.2:45313812-45313831 None:intergenic 25.0%
! AAACTGAAATAGGTAAAAGT+TGG - chr5.2:45313855-45313874 MS.gene042694:CDS 25.0%
! AAATGTAATGTAATGCAATC+AGG + chr5.2:45312077-45312096 None:intergenic 25.0%
! AACTGAAATAGGTAAAAGTT+GGG - chr5.2:45313856-45313875 MS.gene042694:CDS 25.0%
! AATAGGGATTCATGTTAATT+AGG - chr5.2:45313140-45313159 MS.gene042694:intron 25.0%
! ACATTCAATTCAATCAGATA+AGG + chr5.2:45311676-45311695 None:intergenic 25.0%
! CATTCAATTCAATCAGATAA+GGG + chr5.2:45311675-45311694 None:intergenic 25.0%
! CATTGAATAAACAATGTATC+TGG + chr5.2:45312190-45312209 None:intergenic 25.0%
! CTTTCGTAATATGAATTCAA+AGG + chr5.2:45313571-45313590 None:intergenic 25.0%
! TAATTAACATGAATCCCTAT+TGG + chr5.2:45313141-45313160 None:intergenic 25.0%
! TGAAAACAATTCTTCTTTAG+AGG - chr5.2:45312672-45312691 MS.gene042694:CDS 25.0%
! TGCTTATAAAAGTGATTTGA+GGG - chr5.2:45312234-45312253 MS.gene042694:intron 25.0%
! TTGCTTATAAAAGTGATTTG+AGG - chr5.2:45312233-45312252 MS.gene042694:intron 25.0%
!!! ATTTTTCTTTTAAGTTCCGT+CGG - chr5.2:45312560-45312579 MS.gene042694:intron 25.0%
!!! TGTTGTTAAAGATTTTGACA+AGG - chr5.2:45312699-45312718 MS.gene042694:intron 25.0%
!!! TTTGAGATGACATTCTTTTT+TGG - chr5.2:45312609-45312628 MS.gene042694:intron 25.0%
!!! TTTTTTATGTGTAGCCAATA+GGG - chr5.2:45313124-45313143 MS.gene042694:intron 25.0%
!!! TTTTTTTATGTGTAGCCAAT+AGG - chr5.2:45313123-45313142 MS.gene042694:intron 25.0%
AAACAAAATGATGATACGCA+TGG + chr5.2:45313270-45313289 None:intergenic 30.0%
AACAGAGAAAGGTTTAATGA+AGG + chr5.2:45312780-45312799 None:intergenic 30.0%
AATTTACTTTGAGTCCAAGA+TGG + chr5.2:45312805-45312824 None:intergenic 30.0%
AGATAAAAGGAATTTGGCTA+AGG - chr5.2:45312376-45312395 MS.gene042694:intron 30.0%
ATTGTCTCAATAGCTATTGT+AGG - chr5.2:45312422-45312441 MS.gene042694:intron 30.0%
GAAATGCATGAATCCTTATT+TGG - chr5.2:45313785-45313804 MS.gene042694:CDS 30.0%
GAGGGAAAAAAACATAGTAA+AGG + chr5.2:45313396-45313415 None:intergenic 30.0%
GCTTATAAAAGTGATTTGAG+GGG - chr5.2:45312235-45312254 MS.gene042694:intron 30.0%
TTAATAATTACGCAAGCAGT+CGG - chr5.2:45311415-45311434 MS.gene042694:CDS 30.0%
TTGATGAGTTCAACAGTTAA+GGG + chr5.2:45313606-45313625 None:intergenic 30.0%
TTGCTTATAATAGTGACTAG+AGG + chr5.2:45312119-45312138 None:intergenic 30.0%
TTGTCTCAATAGCTATTGTA+GGG - chr5.2:45312423-45312442 MS.gene042694:intron 30.0%
! ATCTAAAGATGCATTTTACG+AGG + chr5.2:45313415-45313434 None:intergenic 30.0%
! ATGACTAGATGATTGATTCT+AGG + chr5.2:45313074-45313093 None:intergenic 30.0%
! CTACGATAATAGATTTTCGT+TGG + chr5.2:45312876-45312895 None:intergenic 30.0%
! GAATTTTTCATTTCAACTGC+AGG - chr5.2:45313735-45313754 MS.gene042694:CDS 30.0%
! TCGTAGATGTATCTGAAATT+TGG - chr5.2:45312890-45312909 MS.gene042694:intron 30.0%
! TCTAAAGATGCATTTTACGA+GGG + chr5.2:45313414-45313433 None:intergenic 30.0%
! TGACTAGATGATTGATTCTA+GGG + chr5.2:45313073-45313092 None:intergenic 30.0%
!!! CTAATTGCATTGTTTTGATC+AGG - chr5.2:45313471-45313490 MS.gene042694:intron 30.0%
AAAATGATGATACGCATGGA+AGG + chr5.2:45313266-45313285 None:intergenic 35.0%
AAACACAGTCTTCATGTTGA+GGG - chr5.2:45313233-45313252 MS.gene042694:intron 35.0%
AAATGATGATACGCATGGAA+GGG + chr5.2:45313265-45313284 None:intergenic 35.0%
AACAAAATGTGCCAAGTTCT+TGG - chr5.2:45312509-45312528 MS.gene042694:intron 35.0%
ACATACCTTCTGCAATATCA+TGG + chr5.2:45311942-45311961 None:intergenic 35.0%
ATCCATCTGCATTACGTAAT+AGG + chr5.2:45312738-45312757 None:intergenic 35.0%
ATGATGACTAATGCTACAAG+AGG + chr5.2:45312840-45312859 None:intergenic 35.0%
ATTAAATGATTGAGCCTACC+TGG - chr5.2:45312026-45312045 MS.gene042694:intron 35.0%
CAAGGCAGTAATTAGGAAAA+TGG - chr5.2:45312996-45313015 MS.gene042694:intron 35.0%
CTTGATGAGTTCAACAGTTA+AGG + chr5.2:45313607-45313626 None:intergenic 35.0%
GGGAAGTTTCAAACTGAAAT+AGG - chr5.2:45313845-45313864 MS.gene042694:CDS 35.0%
GGGTTAATCATGGGATTAAA+GGG - chr5.2:45311731-45311750 MS.gene042694:intron 35.0%
GGTTAATCATGGGATTAAAG+GGG - chr5.2:45311732-45311751 MS.gene042694:intron 35.0%
TACCTATTACGTAATGCAGA+TGG - chr5.2:45312733-45312752 MS.gene042694:intron 35.0%
TATGAAAATTGGAGACCTTC+TGG - chr5.2:45313441-45313460 MS.gene042694:intron 35.0%
TCAACATGAAGACTGTGTTT+GGG + chr5.2:45313233-45313252 None:intergenic 35.0%
TCAATCAGATAAGGGATGAA+TGG + chr5.2:45311667-45311686 None:intergenic 35.0%
TGAAATGATTCTACAAGCAC+TGG - chr5.2:45313495-45313514 MS.gene042694:intron 35.0%
TGATGACTAATGCTACAAGA+GGG + chr5.2:45312839-45312858 None:intergenic 35.0%
TGGGTTAATCATGGGATTAA+AGG - chr5.2:45311730-45311749 MS.gene042694:intron 35.0%
TGTCTCAATAGCTATTGTAG+GGG - chr5.2:45312424-45312443 MS.gene042694:intron 35.0%
! CATTGACAAGCTTTTATTGC+TGG + chr5.2:45313205-45313224 None:intergenic 35.0%
! GATTGATTCTAGGGAAGTTT+AGG + chr5.2:45313064-45313083 None:intergenic 35.0%
!! ACAAGCACTGGAATATGAAA+TGG - chr5.2:45313507-45313526 MS.gene042694:CDS 35.0%
!! CAAGCACTGGAATATGAAAT+GGG - chr5.2:45313508-45313527 MS.gene042694:CDS 35.0%
AAAATGTGCCAAGTTCTTGG+TGG - chr5.2:45312512-45312531 MS.gene042694:intron 40.0%
AACCTTTCTCTACTCAATCC+AGG + chr5.2:45311820-45311839 None:intergenic 40.0%
AGTGAGAAAATCGATAGCAG+AGG + chr5.2:45311595-45311614 None:intergenic 40.0%
ATTGTACATTGTGCAGAGCA+TGG - chr5.2:45313699-45313718 MS.gene042694:intron 40.0%
CAAACACAGTCTTCATGTTG+AGG - chr5.2:45313232-45313251 MS.gene042694:intron 40.0%
CCAAGATGGTAAACAGAGAA+AGG + chr5.2:45312791-45312810 None:intergenic 40.0%
CCTTTCTCTGTTTACCATCT+TGG - chr5.2:45312788-45312807 MS.gene042694:intron 40.0%
CTAATTACTGCCTTGAGTAC+AGG + chr5.2:45312991-45313010 None:intergenic 40.0%
CTCAACATGAAGACTGTGTT+TGG + chr5.2:45313234-45313253 None:intergenic 40.0%
CTCATTGCTTCTGATATTCC+TGG - chr5.2:45311799-45311818 MS.gene042694:intron 40.0%
CTCTTCCAAAGTGACTTTGT+TGG - chr5.2:45313034-45313053 MS.gene042694:intron 40.0%
CTGTACTCAAGGCAGTAATT+AGG - chr5.2:45312989-45313008 MS.gene042694:intron 40.0%
GACTGACAAAGGTCCAAATA+AGG + chr5.2:45313801-45313820 None:intergenic 40.0%
GCAATTAGAAAGCAACCAGA+AGG + chr5.2:45313459-45313478 None:intergenic 40.0%
GTATTGTGTAGACCACAAAG+AGG - chr5.2:45311701-45311720 MS.gene042694:intron 40.0%
TAGTTGCGGAGAAGAACAAA+GGG + chr5.2:45311498-45311517 None:intergenic 40.0%
TCAAAGCCATACGGTACATA+TGG + chr5.2:45311774-45311793 None:intergenic 40.0%
TCAGTACTATCACCTCTGAA+AGG - chr5.2:45312962-45312981 MS.gene042694:intron 40.0%
TGAGTGACATCAAAGCCATA+CGG + chr5.2:45311783-45311802 None:intergenic 40.0%
TTAAAGCTTCCTGCTCCATT+CGG + chr5.2:45312490-45312509 None:intergenic 40.0%
TTCCTGGATTGAGTAGAGAA+AGG - chr5.2:45311815-45311834 MS.gene042694:CDS 40.0%
! AACGATTATCAAAGCACTCC+AGG + chr5.2:45312047-45312066 None:intergenic 40.0%
! ATTATCAAAGCACTCCAGGT+AGG + chr5.2:45312043-45312062 None:intergenic 40.0%
! CAACAAAGTCACTTTGGAAG+AGG + chr5.2:45313036-45313055 None:intergenic 40.0%
!! AGGAAAGGATGGGTTAATCA+TGG - chr5.2:45311721-45311740 MS.gene042694:intron 40.0%
!! GGAAAGGATGGGTTAATCAT+GGG - chr5.2:45311722-45311741 MS.gene042694:intron 40.0%
AAAATCGATAGCAGAGGAGG+AGG + chr5.2:45311589-45311608 None:intergenic 45.0%
AACCCATCCTTTCCTCTTTG+TGG + chr5.2:45311716-45311735 None:intergenic 45.0%
ACGGTACATATGGTCAGCTA+TGG + chr5.2:45311764-45311783 None:intergenic 45.0%
AGACCACAAAGAGGAAAGGA+TGG - chr5.2:45311710-45311729 MS.gene042694:intron 45.0%
AGCTGACCATATGTACCGTA+TGG - chr5.2:45311765-45311784 MS.gene042694:intron 45.0%
CACAGCACAGAAGAAAGCAA+AGG + chr5.2:45311895-45311914 None:intergenic 45.0%
CACCACTGCATCATCATCAA+CGG - chr5.2:45311448-45311467 MS.gene042694:CDS 45.0%
CATACTCCAACCACAGTTCT+TGG + chr5.2:45312654-45312673 None:intergenic 45.0%
CTCGTCCATGATATTGCAGA+AGG - chr5.2:45311934-45311953 MS.gene042694:intron 45.0%
CTGATGAGATCCAAGAACTG+TGG - chr5.2:45312641-45312660 MS.gene042694:CDS 45.0%
GACCACAAAGAGGAAAGGAT+GGG - chr5.2:45311711-45311730 MS.gene042694:intron 45.0%
GAGAAAATCGATAGCAGAGG+AGG + chr5.2:45311592-45311611 None:intergenic 45.0%
GCCAAATTTCAAAGCTCCGA+CGG + chr5.2:45312579-45312598 None:intergenic 45.0%
GCTAGCCAACAAAGTCACTT+TGG + chr5.2:45313042-45313061 None:intergenic 45.0%
GGGGATATAACACCATCTGA+TGG - chr5.2:45312443-45312462 MS.gene042694:intron 45.0%
GTAGTTGCGGAGAAGAACAA+AGG + chr5.2:45311499-45311518 None:intergenic 45.0%
GTGTAGACCACAAAGAGGAA+AGG - chr5.2:45311706-45311725 MS.gene042694:intron 45.0%
TAAGGCTGAAAAGAGCCGAA+TGG - chr5.2:45312472-45312491 MS.gene042694:intron 45.0%
TGAGATCCAAGAACTGTGGT+TGG - chr5.2:45312645-45312664 MS.gene042694:CDS 45.0%
TGAGTAAGTGAGTGAGTGAG+AGG + chr5.2:45311970-45311989 None:intergenic 45.0%
TGGAAGAGGAAAGTAGCACT+GGG + chr5.2:45313022-45313041 None:intergenic 45.0%
TGTGAACGAACCATAACGAG+AGG + chr5.2:45311525-45311544 None:intergenic 45.0%
TTGGAAGAGGAAAGTAGCAC+TGG + chr5.2:45313023-45313042 None:intergenic 45.0%
! ATTCGGCTCTTTTCAGCCTT+AGG + chr5.2:45312473-45312492 None:intergenic 45.0%
! TGCAGAGCATGGAAAAGTAC+TGG - chr5.2:45313710-45313729 MS.gene042694:CDS 45.0%
!! TCCGTCGGAGCTTTGAAATT+TGG - chr5.2:45312575-45312594 MS.gene042694:intron 45.0%
!! TGAAAGGTGTCCTGTACTCA+AGG - chr5.2:45312978-45312997 MS.gene042694:intron 45.0%
ATGTGCCAAGTTCTTGGTGG+AGG - chr5.2:45312515-45312534 MS.gene042694:intron 50.0%
CAACTACGCTCCTCTCGTTA+TGG - chr5.2:45311512-45311531 MS.gene042694:intron 50.0%
CACTGCATCATCATCAACGG+CGG - chr5.2:45311451-45311470 MS.gene042694:CDS 50.0%
CTACGATGTTTCGCGGTTGA+AGG + chr5.2:45313176-45313195 None:intergenic 50.0%
GACAGAGCTACGATGTTTCG+CGG + chr5.2:45313183-45313202 None:intergenic 50.0%
GAGTACAGGACACCTTTCAG+AGG + chr5.2:45312977-45312996 None:intergenic 50.0%
TCATCCCTCCACCAAGAACT+TGG + chr5.2:45312523-45312542 None:intergenic 50.0%
TGAAAAGAGCCGAATGGAGC+AGG - chr5.2:45312478-45312497 MS.gene042694:intron 50.0%
TGTGCCAAGTTCTTGGTGGA+GGG - chr5.2:45312516-45312535 MS.gene042694:intron 50.0%
! ACCATCTGATGGTGTGCCTA+AGG - chr5.2:45312454-45312473 MS.gene042694:intron 50.0%
! GAGAGCATACCTTGAGAGTG+TGG + chr5.2:45311623-45311642 None:intergenic 50.0%
! TAACGAGAGGAGCGTAGTTG+CGG + chr5.2:45311512-45311531 None:intergenic 50.0%
ATCGATAGCAGAGGAGGAGG+AGG + chr5.2:45311586-45311605 None:intergenic 55.0%
CACTCTCTGCCACACTCTCA+AGG - chr5.2:45311611-45311630 MS.gene042694:intron 55.0%
GCCTTAGGCACACCATCAGA+TGG + chr5.2:45312458-45312477 None:intergenic 55.0%
GTTCTTGGTGGAGGGATGAG+AGG - chr5.2:45312524-45312543 MS.gene042694:intron 55.0%
!! CGCCGTTGATGATGATGCAG+TGG + chr5.2:45311453-45311472 None:intergenic 55.0%
GATAGCAGAGGAGGAGGAGG+AGG + chr5.2:45311583-45311602 None:intergenic 60.0%
! GAGGAGGAGGAGGTGTGAGA+GGG + chr5.2:45311564-45311583 None:intergenic 60.0%
AGAGGAGGAGGAGGAGGAGG+AGG + chr5.2:45311577-45311596 None:intergenic 65.0%
AGCAGAGGAGGAGGAGGAGG+AGG + chr5.2:45311580-45311599 None:intergenic 65.0%
! GGAGGAGGAGGAGGTGTGAG+AGG + chr5.2:45311565-45311584 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr5.2:45311571-45311590 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 45311408 45313931 45311408 ID=MS.gene042694
chr5.2 mRNA 45311408 45313931 45311408 ID=MS.gene042694.t1;Parent=MS.gene042694
chr5.2 exon 45313707 45313931 45313707 ID=MS.gene042694.t1.exon1;Parent=MS.gene042694.t1
chr5.2 CDS 45313707 45313931 45313707 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45313503 45313627 45313503 ID=MS.gene042694.t1.exon2;Parent=MS.gene042694.t1
chr5.2 CDS 45313503 45313627 45313503 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45313384 45313421 45313384 ID=MS.gene042694.t1.exon3;Parent=MS.gene042694.t1
chr5.2 CDS 45313384 45313421 45313384 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45312794 45312904 45312794 ID=MS.gene042694.t1.exon4;Parent=MS.gene042694.t1
chr5.2 CDS 45312794 45312904 45312794 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45312619 45312698 45312619 ID=MS.gene042694.t1.exon5;Parent=MS.gene042694.t1
chr5.2 CDS 45312619 45312698 45312619 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45311810 45311846 45311810 ID=MS.gene042694.t1.exon6;Parent=MS.gene042694.t1
chr5.2 CDS 45311810 45311846 45311810 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45311583 45311624 45311583 ID=MS.gene042694.t1.exon7;Parent=MS.gene042694.t1
chr5.2 CDS 45311583 45311624 45311583 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
chr5.2 exon 45311408 45311493 45311408 ID=MS.gene042694.t1.exon8;Parent=MS.gene042694.t1
chr5.2 CDS 45311408 45311493 45311408 ID=cds.MS.gene042694.t1;Parent=MS.gene042694.t1
Gene Sequence

>MS.gene042694

ATGGCGATTAATAATTACGCAAGCAGTCGGCATTGTATGTCACCACTGCATCATCATCAACGGCGGTCGATTCATGTTGTAACAAAACCCTTTGTTCTTCTCCGCAACTACGCTCCTCTCGTTATGGTTCGTTCACACACTCAGAAACATGAACCCTCTCACACCTCCTCCTCCTCCTCCTCCTCCTCTGCTATCGATTTTCTCACTCTCTGCCACACTCTCAAGGTATGCTCTCTCTACAAACACAAAGATTCAACCATTCATCCCTTATCTGATTGAATTGAATGTGTATTGTATTGTGTAGACCACAAAGAGGAAAGGATGGGTTAATCATGGGATTAAAGGGGCTGAATCCATAGCTGACCATATGTACCGTATGGCTTTGATGTCACTCATTGCTTCTGATATTCCTGGATTGAGTAGAGAAAGGTTCACTGCTTTCACTTTCACTTTTTCTTCTTTCAATTTCTCGTCTTGTCTCACTCCTTTGCTTTCTTCTGTGCTGTGCAGATGTATTAAAATTGCTCTCGTCCATGATATTGCAGAAGGTATGTTTGTTCCTCTCACTCACTCACTTACTCAATTGCGCGATAATAATCATTACTACATTGCTTATCAATTAAATGATTGAGCCTACCTGGAGTGCTTTGATAATCGTTTTCAAAACCTGATTGCATTACATTACATTTTCTTTCGTGAAATTTGTTTCCTCTAGTCACTATTATAAGCAAAAATTTCAGATTCATTGAATGACTGATGTATCTTGTATATATTATAGACCAGATACATTGTTTATTCAATGAATCTGAAGAAAAAAAAGAATTTTTGCTTATAAAAGTGATTTGAGGGGTAGTGTTTAGTGACAAAAATGTTGAATTATTTGTATTTCTTAATAAATTGGTGCTTAGTTGTCTGTCATTGTGTGTCACTCAACACATTGCTTTTTCTAGAGTTTATGTCTAAAATAAAGATAAAAGGAATTTGGCTAAGGTATTAGTTAAATCTGAGTTCAGTATTGTCTCAATAGCTATTGTAGGGGATATAACACCATCTGATGGTGTGCCTAAGGCTGAAAAGAGCCGAATGGAGCAGGAAGCTTTAAACAAAATGTGCCAAGTTCTTGGTGGAGGGATGAGAGGTATTGCAAAACAAATTTTTCTTTTAAGTTCCGTCGGAGCTTTGAAATTTGGCATCAACTTTATTTGAGATGACATTCTTTTTTGGTATTTGAAGCTGATGAGATCCAAGAACTGTGGTTGGAGTATGAAAACAATTCTTCTTTAGAGGCTAATGTTGTTAAAGATTTTGACAAGGTATGCATATGCTACCTATTACGTAATGCAGATGGATCTGTTGTGTCTTTTTTGCTCCTTCATTAAACCTTTCTCTGTTTACCATCTTGGACTCAAAGTAAATTGCACATTTGCGCCCTCTTGTAGCATTAGTCATCATTTTTTTTATGAAACCAACGAAAATCTATTATCGTAGATGTATCTGAAATTTGGAACATTAAAAACTTGGTTTGATTTTGAAGATAATATGAAGGTCAAGTTTTCAGTACTATCACCTCTGAAAGGTGTCCTGTACTCAAGGCAGTAATTAGGAAAATGGCCCAGTGCTACTTTCCTCTTCCAAAGTGACTTTGTTGGCTAGCCTAAACTTCCCTAGAATCAATCATCTAGTCATTGTTTTCCCATGTTTGCTTTTTATTTTTTTTTTTTTATGTGTAGCCAATAGGGATTCATGTTAATTAGGACAGAAACTGCCTTCAACCGCGAAACATCGTAGCTCTGTCCAGCAATAAAAGCTTGTCAATGCTTTGCCCAAACACAGTCTTCATGTTGAGGGAAACATCCCTTCCATGCGTATCATCATTTTGTTTCAGTATAACTTGCAGTGACAGTGATCAAATCAGAATACATTTTTATGCTTTTGTAATAACTGATATAGACAAAAATTCATGAAGATAAAATGTAATAATTTCTCCTTTACTATGTTTTTTTCCCTCGTAAAATGCATCTTTAGATCTGTAATATGAAAATTGGAGACCTTCTGGTTGCTTTCTAATTGCATTGTTTTGATCAGGTTGAAATGATTCTACAAGCACTGGAATATGAAATGGGTAAGTTATAGACATTAGACAGATACATTTGCATGTAGCCTTTGAATTCATATTACGAAAGCAACATTAGAATCCCTTAACTGTTGAACTCATCAAGCATTTTAATGAGTTAATAAATAATTTTTGCGCAACAACACCGTTTTGTAATGCTAAAAAATAACTTGATTATATTGTACATTGTGCAGAGCATGGAAAAGTACTGGATGAATTTTTCATTTCAACTGCAGGTAGAATTGAAACTTCTCTTCTACAGATGAAATGCATGAATCCTTATTTGGACCTTTGTCAGTCACATAATTTTTTGTTTTGTATTCAGGGAAGTTTCAAACTGAAATAGGTAAAAGTTGGGCAGCCGAAATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAAGTTAAGTTGA
Protein sequence

>MS.gene042694.t1

MAINNYASSRHCMSPLHHHQRRSIHVVTKPFVLLRNYAPLVMVRSHTQKHEPSHTSSSSSSSSAIDFLTLCHTLKTTKRKGWVNHGIKGAESIADHMYRMALMSLIASDIPGLSRERCIKIALVHDIAEAIVGDITPSDGVPKAEKSRMEQEALNKMCQVLGGGMRADEIQELWLEYENNSSLEANVVKDFDKVEMILQALEYEMEHGKVLDEFFISTAGKFQTEIGKSWAAEIISRRKSLSAKKLS