Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99675.t1 | RHN74043.1 | 94.1 | 152 | 9 | 0 | 3 | 154 | 80 | 231 | 4.90E-75 | 290.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99675.t1 | Q7Z4H3 | 54.4 | 149 | 64 | 3 | 7 | 153 | 32 | 178 | 1.6e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99675.t1 | A0A396JCK9 | 94.1 | 152 | 9 | 0 | 3 | 154 | 80 | 231 | 3.5e-75 | 290.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene99675 | 0.801637 | 8.19E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene99675 | 0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene99675 | 0.818945 | 1.50E-52 | -1.69E-46 |
| MS.gene049910 | MS.gene99675 | 0.813387 | 2.63E-51 | -1.69E-46 |
| MS.gene049915 | MS.gene99675 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene99675 | 0.838815 | 2.30E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene99675 | 0.846451 | 2.15E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene99675 | 0.851954 | 6.34E-61 | -1.69E-46 |
| MS.gene050442 | MS.gene99675 | 0.819308 | 1.24E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene99675 | 0.846389 | 2.24E-59 | -1.69E-46 |
| MS.gene050560 | MS.gene99675 | 0.814036 | 1.89E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene99675 | 0.819706 | 1.01E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene99675 | 0.817362 | 3.43E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene99675 | 0.817751 | 2.80E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene99675 | 0.83491 | 2.28E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene99675 | 0.814658 | 1.38E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene99675 | 0.806158 | 9.42E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene99675 | 0.81722 | 3.69E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene99675 | 0.801718 | 7.89E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene99675 | 0.83641 | 9.51E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene99675 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene99675 | 0.81594 | 7.15E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene99675 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene99675 | 0.843957 | 1.02E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene99675 | 0.82386 | 1.10E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene99675 | 0.833718 | 4.54E-56 | -1.69E-46 |
| MS.gene057750 | MS.gene99675 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene99675 | -0.809701 | 1.66E-50 | -1.69E-46 |
| MS.gene061085 | MS.gene99675 | 0.813456 | 2.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99675 | MS.gene80151 | PPI |
| MS.gene042694 | MS.gene99675 | PPI |
| MS.gene99675 | MS.gene78737 | PPI |
| MS.gene99675 | MS.gene053927 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99675.t1 | MTR_4g129850 | 74.658 | 146 | 35 | 1 | 5 | 148 | 53 | 198 | 5.52e-79 | 233 |
| MS.gene99675.t1 | MTR_4g129860 | 70.667 | 150 | 42 | 1 | 1 | 148 | 50 | 199 | 4.42e-75 | 224 |
| MS.gene99675.t1 | MTR_0194s0040 | 69.178 | 146 | 45 | 0 | 3 | 148 | 64 | 209 | 5.72e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99675.t1 | AT2G23820 | 77.551 | 147 | 33 | 0 | 3 | 149 | 90 | 236 | 1.06e-82 | 244 |
| MS.gene99675.t1 | AT2G23820 | 78.082 | 146 | 32 | 0 | 3 | 148 | 90 | 235 | 2.62e-82 | 243 |
| MS.gene99675.t1 | AT1G26160 | 71.918 | 146 | 41 | 0 | 3 | 148 | 86 | 231 | 5.31e-73 | 219 |
| MS.gene99675.t1 | AT1G26160 | 70.000 | 120 | 36 | 0 | 3 | 122 | 86 | 205 | 4.52e-58 | 180 |
Find 41 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGGTCCTTGACAAATT+TGG | 0.177402 | 2.1:+39538127 | None:intergenic |
| TCAATTTAGGTGTGTCAAAA+TGG | 0.249596 | 2.1:-39538539 | MS.gene99675:intron |
| TCCTTGACAAATTTGGCTTC+TGG | 0.302864 | 2.1:+39538134 | None:intergenic |
| TTTATCTTACAGCAATTGTT+GGG | 0.346868 | 2.1:-39538397 | MS.gene99675:intron |
| TCACATTCAATACCTATATA+TGG | 0.366402 | 2.1:-39535417 | MS.gene99675:CDS |
| TATGTATCGCATGGGTTTGA+TGG | 0.393567 | 2.1:-39538724 | MS.gene99675:CDS |
| ATAGGTTACGTGCCATATAT+AGG | 0.406639 | 2.1:+39535405 | None:intergenic |
| CTTTATCTTACAGCAATTGT+TGG | 0.413282 | 2.1:-39538398 | MS.gene99675:intron |
| AACTTATCTCGGTCGACGCC+AGG | 0.422001 | 2.1:+39538681 | None:intergenic |
| CACAGAGCAAGAGAAGGATT+TGG | 0.423559 | 2.1:-39535524 | MS.gene99675:intron |
| ATTTGTCAAGGACCTTGATA+AGG | 0.434537 | 2.1:-39538123 | MS.gene99675:intron |
| GGGGACATAACGCCGATAGA+TGG | 0.441459 | 2.1:-39538377 | MS.gene99675:CDS |
| CTTCTTCATATTCCAAGGCT+TGG | 0.442580 | 2.1:+39536987 | None:intergenic |
| CCACAACTCAGCAATTTCCT+TGG | 0.443412 | 2.1:+39538181 | None:intergenic |
| CTTCATATTCCAAGGCTTGG+AGG | 0.445647 | 2.1:+39536990 | None:intergenic |
| GCGAAAAGAGGTTCAGAATC+CGG | 0.457454 | 2.1:-39538763 | MS.gene99675:CDS |
| ATATGATCCGCTACAGATTC+CGG | 0.464731 | 2.1:+39538744 | None:intergenic |
| AAAACATACCAGCAGTTGAC+TGG | 0.472653 | 2.1:+39535491 | None:intergenic |
| CTCACCTTCTTCATATTCCA+AGG | 0.497793 | 2.1:+39536982 | None:intergenic |
| AGCAGGATGGTTGCGAAAAG+AGG | 0.512647 | 2.1:-39538775 | MS.gene99675:CDS |
| GGAGATGATCCTCCAAGCCT+TGG | 0.513734 | 2.1:-39536999 | MS.gene99675:CDS |
| GAAGAGATATTAACTTATCT+CGG | 0.521138 | 2.1:+39538670 | None:intergenic |
| GATCATATGTGTAAAGTGCT+TGG | 0.541181 | 2.1:-39538311 | MS.gene99675:CDS |
| ACGACGAGAACAAGAAGCAC+TGG | 0.544305 | 2.1:-39538333 | MS.gene99675:CDS |
| AGCGGATCATATGTATCGCA+TGG | 0.548823 | 2.1:-39538733 | MS.gene99675:CDS |
| CCAAGGAAATTGCTGAGTTG+TGG | 0.554797 | 2.1:-39538181 | MS.gene99675:CDS |
| ATGTGTAAAGTGCTTGGAGG+TGG | 0.558256 | 2.1:-39538305 | MS.gene99675:CDS |
| CGGTCGACGCCAGGAAAATG+AGG | 0.562848 | 2.1:+39538690 | None:intergenic |
| AACATCCACAAACCTTATCA+AGG | 0.563248 | 2.1:+39538111 | None:intergenic |
| TCCAGAAGCCAAATTTGTCA+AGG | 0.579287 | 2.1:-39538135 | MS.gene99675:CDS |
| AAACAGACTACAAAACGAGC+AGG | 0.580185 | 2.1:-39538792 | MS.gene99675:CDS |
| CAAGCCTTGGAATATGAAGA+AGG | 0.591196 | 2.1:-39536986 | MS.gene99675:intron |
| GTGCTTGGAGGTGGATCTAG+AGG | 0.602978 | 2.1:-39538296 | MS.gene99675:intron |
| TTATCTTACAGCAATTGTTG+GGG | 0.614388 | 2.1:-39538396 | MS.gene99675:intron |
| TTTATGCACAGAGCAAGAGA+AGG | 0.625529 | 2.1:-39535530 | MS.gene99675:intron |
| GCGGATCATATGTATCGCAT+GGG | 0.625670 | 2.1:-39538732 | MS.gene99675:CDS |
| ATTGTTCATGATATCGCAGA+AGG | 0.628157 | 2.1:-39538514 | MS.gene99675:intron |
| GGAAATTGCTGAGTTGTGGA+CGG | 0.640826 | 2.1:-39538177 | MS.gene99675:CDS |
| CATATGTGTAAAGTGCTTGG+AGG | 0.648647 | 2.1:-39538308 | MS.gene99675:CDS |
| TCAGAATCCGGAATCTGTAG+CGG | 0.653088 | 2.1:-39538751 | MS.gene99675:CDS |
| AGACTACAAAACGAGCAGGA+TGG | 0.672725 | 2.1:-39538788 | MS.gene99675:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATTATAGACT+TGG | - | chr2.1:39537516-39537535 | MS.gene99675:intron | 10.0% |
| !! | ATGATATCATTATAATTAAA+TGG | - | chr2.1:39537728-39537747 | MS.gene99675:intron | 10.0% |
| !! | TAAAGTATAAACTAATATAT+TGG | + | chr2.1:39538248-39538267 | None:intergenic | 10.0% |
| !!! | ATATTAGTTTATACTTTATA+TGG | - | chr2.1:39538250-39538269 | MS.gene99675:intron | 10.0% |
| !!! | ATTTGTTTATATTTTTTGAA+TGG | - | chr2.1:39538759-39538778 | MS.gene99675:CDS | 10.0% |
| !! | AAGATACTCAATTATTTAAT+GGG | - | chr2.1:39535604-39535623 | MS.gene99675:intron | 15.0% |
| !! | AATAGTTAAAATCATTGAAA+AGG | + | chr2.1:39536165-39536184 | None:intergenic | 15.0% |
| !! | TAAGATACTCAATTATTTAA+TGG | - | chr2.1:39535603-39535622 | MS.gene99675:intron | 15.0% |
| !!! | AAACGACAATATTTTAAAAA+TGG | - | chr2.1:39537836-39537855 | MS.gene99675:intron | 15.0% |
| !!! | TTTATATTTTTTGAATGGTA+AGG | - | chr2.1:39538764-39538783 | MS.gene99675:CDS | 15.0% |
| !! | AAAAATTATAGACTTGGATT+TGG | - | chr2.1:39537522-39537541 | MS.gene99675:intron | 20.0% |
| !! | AAATCAAAGGTAGATATTAT+AGG | - | chr2.1:39538088-39538107 | MS.gene99675:intron | 20.0% |
| !! | ATTTAAAAATCCCACTTATT+AGG | - | chr2.1:39536922-39536941 | MS.gene99675:intron | 20.0% |
| !! | CTGTATAGATCAAAATTTAA+AGG | + | chr2.1:39537184-39537203 | None:intergenic | 20.0% |
| !! | CTTTCAATGATTTATTTATG+AGG | - | chr2.1:39536129-39536148 | MS.gene99675:intron | 20.0% |
| !! | GTACAAAAATTTAACTACTA+AGG | + | chr2.1:39538276-39538295 | None:intergenic | 20.0% |
| !! | TAGAAAAGAATACAAAGTTA+AGG | + | chr2.1:39536389-39536408 | None:intergenic | 20.0% |
| !! | TTATATGCTGTTAAATCTTT+AGG | - | chr2.1:39536197-39536216 | MS.gene99675:intron | 20.0% |
| !! | TTTCTTAACTATAAGTCTAT+AGG | + | chr2.1:39538199-39538218 | None:intergenic | 20.0% |
| !!! | CTTTAAATTTTGATCTATAC+AGG | - | chr2.1:39537182-39537201 | MS.gene99675:intron | 20.0% |
| !!! | TTAATCTAAAACCAAAATGA+TGG | + | chr2.1:39537117-39537136 | None:intergenic | 20.0% |
| !!! | TTCTTAAACTTGTTTTCTTT+TGG | - | chr2.1:39538651-39538670 | MS.gene99675:intron | 20.0% |
| !!! | TTTGTATAAATCCATCATTT+TGG | - | chr2.1:39537103-39537122 | MS.gene99675:intron | 20.0% |
| !!! | TTTTTCTTCTTCTTCAATTT+AGG | - | chr2.1:39535653-39535672 | MS.gene99675:intron | 20.0% |
| ! | AAAAAACACTACCAAATTAG+TGG | + | chr2.1:39536551-39536570 | None:intergenic | 25.0% |
| ! | AAATCAAAGGTAGATATTGT+AGG | - | chr2.1:39538358-39538377 | MS.gene99675:CDS | 25.0% |
| ! | AACTATAAGTCTATAGGATT+TGG | + | chr2.1:39538193-39538212 | None:intergenic | 25.0% |
| ! | ACTCAGGATAAAAATTACAA+AGG | - | chr2.1:39537928-39537947 | MS.gene99675:intron | 25.0% |
| ! | AGTGAATAATATCAACCTTT+AGG | - | chr2.1:39537580-39537599 | MS.gene99675:intron | 25.0% |
| ! | ATTTATACAAAGTAATGGTC+CGG | + | chr2.1:39537094-39537113 | None:intergenic | 25.0% |
| ! | CTCAAAAAATACAATGACTT+AGG | + | chr2.1:39536672-39536691 | None:intergenic | 25.0% |
| ! | GAAGAGATATTAACTTATCT+CGG | + | chr2.1:39535538-39535557 | None:intergenic | 25.0% |
| ! | GTCAGAATATGATAGAAAAA+TGG | - | chr2.1:39537954-39537973 | MS.gene99675:intron | 25.0% |
| ! | GTGAATAATATCAACCTTTA+GGG | - | chr2.1:39537581-39537600 | MS.gene99675:intron | 25.0% |
| ! | GTTAAATCTTTAGGCTTATT+GGG | - | chr2.1:39536206-39536225 | MS.gene99675:intron | 25.0% |
| ! | TAACAAAGAAACAATGCATA+GGG | + | chr2.1:39536256-39536275 | None:intergenic | 25.0% |
| ! | TCACATTCAATACCTATATA+TGG | - | chr2.1:39538788-39538807 | MS.gene99675:CDS | 25.0% |
| ! | TCATTCTTACACTATCTATA+GGG | - | chr2.1:39536312-39536331 | MS.gene99675:intron | 25.0% |
| ! | TGTTAAATCTTTAGGCTTAT+TGG | - | chr2.1:39536205-39536224 | MS.gene99675:intron | 25.0% |
| ! | TTAAAGGATTCAAGTAACTA+GGG | + | chr2.1:39537168-39537187 | None:intergenic | 25.0% |
| ! | TTCATTCTTACACTATCTAT+AGG | - | chr2.1:39536311-39536330 | MS.gene99675:intron | 25.0% |
| ! | TTTAAAAATGGCAGAATATC+AGG | - | chr2.1:39537848-39537867 | MS.gene99675:intron | 25.0% |
| ! | TTTAAAGGATTCAAGTAACT+AGG | + | chr2.1:39537169-39537188 | None:intergenic | 25.0% |
| ! | TTTATCTTACAGCAATTGTT+GGG | - | chr2.1:39535808-39535827 | MS.gene99675:intron | 25.0% |
| !! | AAGTGGGATTTTTAAATCTA+GGG | + | chr2.1:39536919-39536938 | None:intergenic | 25.0% |
| !! | GATGGATTTATACAAAGTAA+TGG | + | chr2.1:39537099-39537118 | None:intergenic | 25.0% |
| !! | GTAATTTTTATCCTGAGTAT+AGG | + | chr2.1:39537926-39537945 | None:intergenic | 25.0% |
| !! | TAAGTGGGATTTTTAAATCT+AGG | + | chr2.1:39536920-39536939 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTTCTTTCATGT+GGG | - | chr2.1:39535719-39535738 | MS.gene99675:intron | 25.0% |
| !! | TTGAAGAAATCTAAAGCATA+TGG | + | chr2.1:39538630-39538649 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTTTCTTTCATG+TGG | - | chr2.1:39535718-39535737 | MS.gene99675:intron | 25.0% |
| !!! | ACCTTTGATTTGTTAACTAA+CGG | + | chr2.1:39538079-39538098 | None:intergenic | 25.0% |
| !!! | ACCTTTGATTTGTTAACTAA+GGG | + | chr2.1:39538079-39538098 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTTATGAACCTA+GGG | - | chr2.1:39536428-39536447 | MS.gene99675:intron | 25.0% |
| !!! | TAAATTTTGATCTATACAGG+TGG | - | chr2.1:39537185-39537204 | MS.gene99675:intron | 25.0% |
| !!! | TACCTTTGATTTGTTAACTA+AGG | + | chr2.1:39538080-39538099 | None:intergenic | 25.0% |
| !!! | TATTAGTTTGTTATGAACCT+AGG | - | chr2.1:39536427-39536446 | MS.gene99675:intron | 25.0% |
| !!! | TTTATTTTATCCTATCCCTT+TGG | - | chr2.1:39537977-39537996 | MS.gene99675:intron | 25.0% |
| !!! | TTTTTTTGAGAAAGCATAAG+AGG | - | chr2.1:39536568-39536587 | MS.gene99675:intron | 25.0% |
| AAGTTAAGGTGACAAAATGT+CGG | + | chr2.1:39536375-39536394 | None:intergenic | 30.0% | |
| AATACAATGACTTAGGACTT+TGG | + | chr2.1:39536665-39536684 | None:intergenic | 30.0% | |
| AATGATCTTATAATCCCATC+AGG | - | chr2.1:39537884-39537903 | MS.gene99675:intron | 30.0% | |
| ACAGGTTTGATAAAATCTAC+TGG | + | chr2.1:39537058-39537077 | None:intergenic | 30.0% | |
| ACCCTTAGTTAACAAATCAA+AGG | - | chr2.1:39538075-39538094 | MS.gene99675:intron | 30.0% | |
| ACCGTTAGTTAACAAATCAA+AGG | - | chr2.1:39538345-39538364 | MS.gene99675:CDS | 30.0% | |
| AGTGTAAAGTGAGAAAATCA+AGG | + | chr2.1:39538152-39538171 | None:intergenic | 30.0% | |
| ATATAAAGCTGGATAGAGAT+AGG | - | chr2.1:39537642-39537661 | MS.gene99675:intron | 30.0% | |
| ATCAAACATGAGATTTAAGC+TGG | - | chr2.1:39538003-39538022 | MS.gene99675:intron | 30.0% | |
| CTTTATCTTACAGCAATTGT+TGG | - | chr2.1:39535807-39535826 | MS.gene99675:intron | 30.0% | |
| GATAGAGATAGGATATGATA+AGG | - | chr2.1:39537653-39537672 | MS.gene99675:intron | 30.0% | |
| GTAACAAAGAAACAATGCAT+AGG | + | chr2.1:39536257-39536276 | None:intergenic | 30.0% | |
| GTGTAAAGTGAGAAAATCAA+GGG | + | chr2.1:39538151-39538170 | None:intergenic | 30.0% | |
| GTTTATCATGACATTGTGAA+AGG | + | chr2.1:39535560-39535579 | None:intergenic | 30.0% | |
| TCAATTTAGGTGTGTCAAAA+TGG | - | chr2.1:39535666-39535685 | MS.gene99675:intron | 30.0% | |
| TCCAAACATAGATAAGTAAC+AGG | + | chr2.1:39535761-39535780 | None:intergenic | 30.0% | |
| TTACACTTTACTCACTTTAG+AGG | - | chr2.1:39538165-39538184 | MS.gene99675:CDS | 30.0% | |
| TTATCTTACAGCAATTGTTG+GGG | - | chr2.1:39535809-39535828 | MS.gene99675:intron | 30.0% | |
| TTTGTTACACATAGACATAG+AGG | - | chr2.1:39536269-39536288 | MS.gene99675:intron | 30.0% | |
| ! | AGAAAACATGATTTTACTCC+TGG | + | chr2.1:39537344-39537363 | None:intergenic | 30.0% |
| ! | CTTTGTTTAGGAGTTAATAG+GGG | - | chr2.1:39536490-39536509 | MS.gene99675:intron | 30.0% |
| ! | GTCTGTACTGATATTTCTTA+TGG | - | chr2.1:39537433-39537452 | MS.gene99675:intron | 30.0% |
| ! | TCCTGTTACTTATCTATGTT+TGG | - | chr2.1:39535757-39535776 | MS.gene99675:intron | 30.0% |
| ! | TTTGAGTTCCTCCATATTAT+GGG | - | chr2.1:39536686-39536705 | MS.gene99675:intron | 30.0% |
| !! | GCTTTGTTTAGGAGTTAATA+GGG | - | chr2.1:39536489-39536508 | MS.gene99675:intron | 30.0% |
| !!! | AATGAAAAGGAGTGTTTTTG+AGG | - | chr2.1:39536513-39536532 | MS.gene99675:intron | 30.0% |
| !!! | ATGAAAAGGAGTGTTTTTGA+GGG | - | chr2.1:39536514-39536533 | MS.gene99675:intron | 30.0% |
| !!! | TCTTTTGGAATTCCATCTAT+CGG | + | chr2.1:39535843-39535862 | None:intergenic | 30.0% |
| !!! | TTTTGAGTTCCTCCATATTA+TGG | - | chr2.1:39536685-39536704 | MS.gene99675:intron | 30.0% |
| AACATCCACAAACCTTATCA+AGG | + | chr2.1:39536097-39536116 | None:intergenic | 35.0% | |
| AACTCCTAAACAAAGCCTAA+CGG | + | chr2.1:39536485-39536504 | None:intergenic | 35.0% | |
| ACTACACATAAAGTGGAGAA+TGG | + | chr2.1:39537415-39537434 | None:intergenic | 35.0% | |
| AGCACCAATGTTATGAACAT+AGG | - | chr2.1:39536835-39536854 | MS.gene99675:intron | 35.0% | |
| AGTACAGACTACACATAAAG+TGG | + | chr2.1:39537422-39537441 | None:intergenic | 35.0% | |
| ATCAAAACCCCATAATATGG+AGG | + | chr2.1:39536697-39536716 | None:intergenic | 35.0% | |
| ATCAAGGTCCTTGACAAATT+TGG | + | chr2.1:39536081-39536100 | None:intergenic | 35.0% | |
| ATCACGAACATTGAAATGTG+TGG | - | chr2.1:39538302-39538321 | MS.gene99675:CDS | 35.0% | |
| ATTGTTCATGATATCGCAGA+AGG | - | chr2.1:39535691-39535710 | MS.gene99675:intron | 35.0% | |
| ATTTGTCAAGGACCTTGATA+AGG | - | chr2.1:39536082-39536101 | MS.gene99675:intron | 35.0% | |
| CAAAATGACCACACAGTTAA+AGG | + | chr2.1:39537278-39537297 | None:intergenic | 35.0% | |
| GAGGAATCATTCCACTAATT+TGG | - | chr2.1:39536537-39536556 | MS.gene99675:intron | 35.0% | |
| GAGTTAATAGGGGAATGAAA+AGG | - | chr2.1:39536500-39536519 | MS.gene99675:intron | 35.0% | |
| GGGTTAGAAATTATCCTGAT+GGG | + | chr2.1:39537901-39537920 | None:intergenic | 35.0% | |
| TAGAGAGTTGAAGAATTTCC+AGG | - | chr2.1:39537323-39537342 | MS.gene99675:intron | 35.0% | |
| TCACGAACATTGAAATGTGT+GGG | - | chr2.1:39538303-39538322 | MS.gene99675:CDS | 35.0% | |
| TGATAAGGTTTGTGGATGTT+TGG | - | chr2.1:39536097-39536116 | MS.gene99675:intron | 35.0% | |
| TGGATCAAAACCCCATAATA+TGG | + | chr2.1:39536700-39536719 | None:intergenic | 35.0% | |
| TTGAGTTCCTCCATATTATG+GGG | - | chr2.1:39536687-39536706 | MS.gene99675:intron | 35.0% | |
| ! | ACTTTGTTTGGGAGTTTGTA+GGG | + | chr2.1:39536757-39536776 | None:intergenic | 35.0% |
| ! | CATTTTCAACAATGAAGCCA+AGG | - | chr2.1:39536007-39536026 | MS.gene99675:intron | 35.0% |
| ! | GATCATATGTGTAAAGTGCT+TGG | - | chr2.1:39535894-39535913 | MS.gene99675:intron | 35.0% |
| ! | TGGGTTAGAAATTATCCTGA+TGG | + | chr2.1:39537902-39537921 | None:intergenic | 35.0% |
| ! | TGGTGGTGTGTAAAAAAGTA+AGG | - | chr2.1:39537467-39537486 | MS.gene99675:intron | 35.0% |
| ! | TTCTTATGGTAGTGTGCAAA+TGG | - | chr2.1:39537447-39537466 | MS.gene99675:intron | 35.0% |
| ! | TTTTATCCTGAGTATAGGCT+GGG | + | chr2.1:39537921-39537940 | None:intergenic | 35.0% |
| ! | TTTTTACGAGTCCCAAATTG+AGG | + | chr2.1:39536955-39536974 | None:intergenic | 35.0% |
| ! | TTTTTATCCTGAGTATAGGC+TGG | + | chr2.1:39537922-39537941 | None:intergenic | 35.0% |
| !! | GGCTTTGTTTAGGAGTTAAT+AGG | - | chr2.1:39536488-39536507 | MS.gene99675:intron | 35.0% |
| !!! | ACCTGTCAAATAGTTTTGTC+CGG | - | chr2.1:39537072-39537091 | MS.gene99675:intron | 35.0% |
| !!! | TGAAAAGGAGTGTTTTTGAG+GGG | - | chr2.1:39536515-39536534 | MS.gene99675:intron | 35.0% |
| AAAACATACCAGCAGTTGAC+TGG | + | chr2.1:39538717-39538736 | None:intergenic | 40.0% | |
| AAACAGACTACAAAACGAGC+AGG | - | chr2.1:39535413-39535432 | MS.gene99675:CDS | 40.0% | |
| AAACTCCCAAACAAAGTCGT+AGG | - | chr2.1:39536760-39536779 | MS.gene99675:intron | 40.0% | |
| AAGGACCTTGATAAGGTTTG+TGG | - | chr2.1:39536089-39536108 | MS.gene99675:intron | 40.0% | |
| ACAATGACTTAGGACTTTGG+AGG | + | chr2.1:39536662-39536681 | None:intergenic | 40.0% | |
| ACCACACAGTTAAAGGTGAT+TGG | + | chr2.1:39537271-39537290 | None:intergenic | 40.0% | |
| ATATGATCCGCTACAGATTC+CGG | + | chr2.1:39535464-39535483 | None:intergenic | 40.0% | |
| ATCCTATCCTGACCATCAAA+CGG | + | chr2.1:39537608-39537627 | None:intergenic | 40.0% | |
| CAAGCCTTGGAATATGAAGA+AGG | - | chr2.1:39537219-39537238 | MS.gene99675:intron | 40.0% | |
| CAATGACTTAGGACTTTGGA+GGG | + | chr2.1:39536661-39536680 | None:intergenic | 40.0% | |
| CACGAACATTGAAATGTGTG+GGG | - | chr2.1:39538304-39538323 | MS.gene99675:CDS | 40.0% | |
| CCACACAGTTAAAGGTGATT+GGG | + | chr2.1:39537270-39537289 | None:intergenic | 40.0% | |
| CCACGAACATTGAAATGTGT+GGG | - | chr2.1:39538573-39538592 | MS.gene99675:intron | 40.0% | |
| CTCACCTTCTTCATATTCCA+AGG | + | chr2.1:39537226-39537245 | None:intergenic | 40.0% | |
| CTCATGTTTGATGCACCAAA+GGG | + | chr2.1:39537995-39538014 | None:intergenic | 40.0% | |
| CTTCTTCATATTCCAAGGCT+TGG | + | chr2.1:39537221-39537240 | None:intergenic | 40.0% | |
| GGCAGGATATGATATAAAGC+TGG | - | chr2.1:39537631-39537650 | MS.gene99675:intron | 40.0% | |
| GGTGTGTAAAAAAGTAAGGC+AGG | - | chr2.1:39537471-39537490 | MS.gene99675:intron | 40.0% | |
| TATGTATCGCATGGGTTTGA+TGG | - | chr2.1:39535481-39535500 | MS.gene99675:intron | 40.0% | |
| TCCAGAAGCCAAATTTGTCA+AGG | - | chr2.1:39536070-39536089 | MS.gene99675:intron | 40.0% | |
| TCCGGACAAAACTATTTGAC+AGG | + | chr2.1:39537076-39537095 | None:intergenic | 40.0% | |
| TCTCATGTTTGATGCACCAA+AGG | + | chr2.1:39537996-39538015 | None:intergenic | 40.0% | |
| TGATAAAATCTACTGGCAGC+AGG | + | chr2.1:39537051-39537070 | None:intergenic | 40.0% | |
| TGATGGTCAGGATAGGATAA+AGG | - | chr2.1:39537610-39537629 | MS.gene99675:intron | 40.0% | |
| TGGGCCTATGTTCATAACAT+TGG | + | chr2.1:39536842-39536861 | None:intergenic | 40.0% | |
| TTTATGCACAGAGCAAGAGA+AGG | - | chr2.1:39538675-39538694 | MS.gene99675:intron | 40.0% | |
| ! | ACATTGGTGCTTTCATTGAG+AGG | + | chr2.1:39536826-39536845 | None:intergenic | 40.0% |
| ! | AGTAGGCTAGTCATTTGTGA+TGG | + | chr2.1:39536875-39536894 | None:intergenic | 40.0% |
| ! | CATATGTGTAAAGTGCTTGG+AGG | - | chr2.1:39535897-39535916 | MS.gene99675:intron | 40.0% |
| ! | CGTCGTCTTTTCTCTTCTTT+TGG | + | chr2.1:39535858-39535877 | None:intergenic | 40.0% |
| ! | CTTTGTTTGGGAGTTTGTAG+GGG | + | chr2.1:39536756-39536775 | None:intergenic | 40.0% |
| ! | GAATTTTTCCAGTCAACTGC+TGG | - | chr2.1:39538706-39538725 | MS.gene99675:CDS | 40.0% |
| ! | GACTTTGTTTGGGAGTTTGT+AGG | + | chr2.1:39536758-39536777 | None:intergenic | 40.0% |
| ! | GTAGGCTAGTCATTTGTGAT+GGG | + | chr2.1:39536874-39536893 | None:intergenic | 40.0% |
| ! | TCCTTGACAAATTTGGCTTC+TGG | + | chr2.1:39536074-39536093 | None:intergenic | 40.0% |
| ! | TCTCACCTACGACTTTGTTT+GGG | + | chr2.1:39536768-39536787 | None:intergenic | 40.0% |
| ! | TCTTTTCTTTCATGTGGGAG+TGG | - | chr2.1:39535724-39535743 | MS.gene99675:intron | 40.0% |
| ! | TTAACTAAGGGTGCGTTTGA+TGG | + | chr2.1:39538067-39538086 | None:intergenic | 40.0% |
| ! | TTATGGTAGTGTGCAAATGG+TGG | - | chr2.1:39537450-39537469 | MS.gene99675:intron | 40.0% |
| !! | AAATGACTAGCCTACTAGGT+GGG | - | chr2.1:39536879-39536898 | MS.gene99675:intron | 40.0% |
| !! | ATGGGGTTTTGATCCAATGA+AGG | - | chr2.1:39536704-39536723 | MS.gene99675:intron | 40.0% |
| !! | TCACAAATGACTAGCCTACT+AGG | - | chr2.1:39536875-39536894 | MS.gene99675:intron | 40.0% |
| !! | TGGGGTTTTGATCCAATGAA+GGG | - | chr2.1:39536705-39536724 | MS.gene99675:intron | 40.0% |
| !! | TGTGCTTTTTGTCTTCTCGA+AGG | - | chr2.1:39536975-39536994 | MS.gene99675:intron | 40.0% |
| !!! | AGATTTTTTCCCCCCTTCAT+TGG | + | chr2.1:39536720-39536739 | None:intergenic | 40.0% |
| AGACTACAAAACGAGCAGGA+TGG | - | chr2.1:39535417-39535436 | MS.gene99675:CDS | 45.0% | |
| AGCGGATCATATGTATCGCA+TGG | - | chr2.1:39535472-39535491 | MS.gene99675:intron | 45.0% | |
| AGGAGTGACGCCTAATAAGT+GGG | + | chr2.1:39536935-39536954 | None:intergenic | 45.0% | |
| CACAGAGCAAGAGAAGGATT+TGG | - | chr2.1:39538681-39538700 | MS.gene99675:intron | 45.0% | |
| CCAAGGAAATTGCTGAGTTG+TGG | - | chr2.1:39536024-39536043 | MS.gene99675:intron | 45.0% | |
| CCACAACTCAGCAATTTCCT+TGG | + | chr2.1:39536027-39536046 | None:intergenic | 45.0% | |
| CCCAATCACCTTTAACTGTG+TGG | - | chr2.1:39537267-39537286 | MS.gene99675:intron | 45.0% | |
| CCCACACATTTCAATGTTCG+TGG | + | chr2.1:39538306-39538325 | None:intergenic | 45.0% | |
| CTCTCACCTACGACTTTGTT+TGG | + | chr2.1:39536769-39536788 | None:intergenic | 45.0% | |
| CTTCATATTCCAAGGCTTGG+AGG | + | chr2.1:39537218-39537237 | None:intergenic | 45.0% | |
| GCCACGAACATTGAAATGTG+TGG | - | chr2.1:39538572-39538591 | MS.gene99675:intron | 45.0% | |
| GCGAAAAGAGGTTCAGAATC+CGG | - | chr2.1:39535442-39535461 | MS.gene99675:intron | 45.0% | |
| GCGGATCATATGTATCGCAT+GGG | - | chr2.1:39535473-39535492 | MS.gene99675:intron | 45.0% | |
| GGAAATTGCTGAGTTGTGGA+CGG | - | chr2.1:39536028-39536047 | MS.gene99675:intron | 45.0% | |
| GTGCGCATCAAACACATGAT+AGG | + | chr2.1:39537696-39537715 | None:intergenic | 45.0% | |
| GTTTGATGCACCAAAGGGAT+AGG | + | chr2.1:39537990-39538009 | None:intergenic | 45.0% | |
| TAGGCGTCACTCCTCAATTT+GGG | - | chr2.1:39536941-39536960 | MS.gene99675:intron | 45.0% | |
| TAGGTGAGAGAACCCTTTGT+GGG | - | chr2.1:39536779-39536798 | MS.gene99675:intron | 45.0% | |
| TCAGAATCCGGAATCTGTAG+CGG | - | chr2.1:39535454-39535473 | MS.gene99675:intron | 45.0% | |
| TCCTATCCTGACCATCAAAC+GGG | + | chr2.1:39537607-39537626 | None:intergenic | 45.0% | |
| TTAGGCGTCACTCCTCAATT+TGG | - | chr2.1:39536940-39536959 | MS.gene99675:intron | 45.0% | |
| TTCTAACCCAGCCTATACTC+AGG | - | chr2.1:39537912-39537931 | MS.gene99675:intron | 45.0% | |
| TTTGGGAGTTTGTAGGGGAA+GGG | + | chr2.1:39536751-39536770 | None:intergenic | 45.0% | |
| ! | ATGTGTAAAGTGCTTGGAGG+TGG | - | chr2.1:39535900-39535919 | MS.gene99675:intron | 45.0% |
| ! | CTCATTGCTCCTCATTTTCC+TGG | - | chr2.1:39535506-39535525 | MS.gene99675:CDS | 45.0% |
| ! | TAGACTCTCGTTTTGTCCCT+AGG | + | chr2.1:39536447-39536466 | None:intergenic | 45.0% |
| ! | TGCGTTTGATGGTCAGGATA+GGG | + | chr2.1:39538056-39538075 | None:intergenic | 45.0% |
| !! | CAAATGACTAGCCTACTAGG+TGG | - | chr2.1:39536878-39536897 | MS.gene99675:intron | 45.0% |
| !! | GGGGTTTTGATCCAATGAAG+GGG | - | chr2.1:39536706-39536725 | MS.gene99675:intron | 45.0% |
| !! | GGGTTTTGATCCAATGAAGG+GGG | - | chr2.1:39536707-39536726 | MS.gene99675:intron | 45.0% |
| !! | GGTTTTGATCCAATGAAGGG+GGG | - | chr2.1:39536708-39536727 | MS.gene99675:intron | 45.0% |
| !! | TGGTCCGTTAGGCTTTGTTT+AGG | - | chr2.1:39536478-39536497 | MS.gene99675:intron | 45.0% |
| !! | TTGTGATGGGCTCTCTCTTT+GGG | + | chr2.1:39536861-39536880 | None:intergenic | 45.0% |
| !! | TTTGTGATGGGCTCTCTCTT+TGG | + | chr2.1:39536862-39536881 | None:intergenic | 45.0% |
| !!! | AAAGGAGTGTTTTTGAGGGG+AGG | - | chr2.1:39536518-39536537 | MS.gene99675:intron | 45.0% |
| AGCAGGATGGTTGCGAAAAG+AGG | - | chr2.1:39535430-39535449 | MS.gene99675:intron | 50.0% | |
| AGCCTACTAGGTGGGATTGT+GGG | - | chr2.1:39536887-39536906 | MS.gene99675:intron | 50.0% | |
| CTTTCATGTGGGAGTGGAGT+GGG | - | chr2.1:39535730-39535749 | MS.gene99675:intron | 50.0% | |
| GAGAGTCTACCCCAAAAGAC+TGG | - | chr2.1:39536458-39536477 | MS.gene99675:intron | 50.0% | |
| GAGGAGTGACGCCTAATAAG+TGG | + | chr2.1:39536936-39536955 | None:intergenic | 50.0% | |
| GGTCAGGATAGGATAAAGGC+AGG | - | chr2.1:39537614-39537633 | MS.gene99675:intron | 50.0% | |
| GTAGGTGAGAGAACCCTTTG+TGG | - | chr2.1:39536778-39536797 | MS.gene99675:intron | 50.0% | |
| GTTTGGGAGTTTGTAGGGGA+AGG | + | chr2.1:39536752-39536771 | None:intergenic | 50.0% | |
| TAGCCTACTAGGTGGGATTG+TGG | - | chr2.1:39536886-39536905 | MS.gene99675:intron | 50.0% | |
| TCTTTCATGTGGGAGTGGAG+TGG | - | chr2.1:39535729-39535748 | MS.gene99675:intron | 50.0% | |
| TTTCATGTGGGAGTGGAGTG+GGG | - | chr2.1:39535731-39535750 | MS.gene99675:intron | 50.0% | |
| ! | ACGACGAGAACAAGAAGCAC+TGG | - | chr2.1:39535872-39535891 | MS.gene99675:intron | 50.0% |
| ! | GTGCGTTTGATGGTCAGGAT+AGG | + | chr2.1:39538057-39538076 | None:intergenic | 50.0% |
| ! | TAAGGGTGCGTTTGATGGTC+AGG | + | chr2.1:39538062-39538081 | None:intergenic | 50.0% |
| !! | AACCTTTAGGGCCCGTTTGA+TGG | - | chr2.1:39537593-39537612 | MS.gene99675:intron | 50.0% |
| !! | AGCCTAACGGACCAGTCTTT+TGG | + | chr2.1:39536472-39536491 | None:intergenic | 50.0% |
| !! | CCTAACGGACCAGTCTTTTG+GGG | + | chr2.1:39536470-39536489 | None:intergenic | 50.0% |
| !! | GCCTAACGGACCAGTCTTTT+GGG | + | chr2.1:39536471-39536490 | None:intergenic | 50.0% |
| AACTTATCTCGGTCGACGCC+AGG | + | chr2.1:39535527-39535546 | None:intergenic | 55.0% | |
| AGGAAGAGGGCTACCCACAA+AGG | + | chr2.1:39536795-39536814 | None:intergenic | 55.0% | |
| CTCCCACAATCCCACCTAGT+AGG | + | chr2.1:39536892-39536911 | None:intergenic | 55.0% | |
| GACCATCAAACGGGCCCTAA+AGG | + | chr2.1:39537598-39537617 | None:intergenic | 55.0% | |
| GAGTTTGTAGGGGAAGGGAG+GGG | + | chr2.1:39536746-39536765 | None:intergenic | 55.0% | |
| GATGGTCAGGATAGGGAGAC+AGG | + | chr2.1:39538049-39538068 | None:intergenic | 55.0% | |
| GGAAGAGGGCTACCCACAAA+GGG | + | chr2.1:39536794-39536813 | None:intergenic | 55.0% | |
| GGAGATGATCCTCCAAGCCT+TGG | - | chr2.1:39537206-39537225 | MS.gene99675:intron | 55.0% | |
| GGAGTTTGTAGGGGAAGGGA+GGG | + | chr2.1:39536747-39536766 | None:intergenic | 55.0% | |
| GGGGACATAACGCCGATAGA+TGG | - | chr2.1:39535828-39535847 | MS.gene99675:intron | 55.0% | |
| GTGCTTGGAGGTGGATCTAG+AGG | - | chr2.1:39535909-39535928 | MS.gene99675:intron | 55.0% | |
| TTCATTGAGAGGCCGACCTC+AGG | + | chr2.1:39536815-39536834 | None:intergenic | 55.0% | |
| ! | CCCCAAAAGACTGGTCCGTT+AGG | - | chr2.1:39536467-39536486 | MS.gene99675:intron | 55.0% |
| ! | GCCCGTTTGATGGTCAGGAT+AGG | - | chr2.1:39537603-39537622 | MS.gene99675:intron | 55.0% |
| ! | TTAGGGCCCGTTTGATGGTC+AGG | - | chr2.1:39537598-39537617 | MS.gene99675:intron | 55.0% |
| AGAGGCCGACCTCAGGAAGA+GGG | + | chr2.1:39536808-39536827 | None:intergenic | 60.0% | |
| CGGTCGACGCCAGGAAAATG+AGG | + | chr2.1:39535518-39535537 | None:intergenic | 60.0% | |
| GGGAGTTTGTAGGGGAAGGG+AGG | + | chr2.1:39536748-39536767 | None:intergenic | 60.0% | |
| GGTAGCCCTCTTCCTGAGGT+CGG | - | chr2.1:39536800-39536819 | MS.gene99675:intron | 60.0% | |
| TGTGGGTAGCCCTCTTCCTG+AGG | - | chr2.1:39536796-39536815 | MS.gene99675:intron | 60.0% | |
| TTTGTAGGGGAAGGGAGGGG+AGG | + | chr2.1:39536743-39536762 | None:intergenic | 60.0% | |
| GAGAGGCCGACCTCAGGAAG+AGG | + | chr2.1:39536809-39536828 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 39535410 | 39538817 | 39535410 | ID=MS.gene99675 |
| chr2.1 | mRNA | 39535410 | 39538817 | 39535410 | ID=MS.gene99675.t1;Parent=MS.gene99675 |
| chr2.1 | exon | 39538684 | 39538817 | 39538684 | ID=MS.gene99675.t1.exon1;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39538684 | 39538817 | 39538684 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39538515 | 39538552 | 39538515 | ID=MS.gene99675.t1.exon2;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39538515 | 39538552 | 39538515 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39538297 | 39538407 | 39538297 | ID=MS.gene99675.t1.exon3;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39538297 | 39538407 | 39538297 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39538124 | 39538203 | 39538124 | ID=MS.gene99675.t1.exon4;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39538124 | 39538203 | 39538124 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39536987 | 39537023 | 39536987 | ID=MS.gene99675.t1.exon5;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39536987 | 39537023 | 39536987 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39535500 | 39535541 | 39535500 | ID=MS.gene99675.t1.exon6;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39535500 | 39535541 | 39535500 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| chr2.1 | exon | 39535410 | 39535441 | 39535410 | ID=MS.gene99675.t1.exon7;Parent=MS.gene99675.t1 |
| chr2.1 | CDS | 39535410 | 39535441 | 39535410 | ID=cds.MS.gene99675.t1;Parent=MS.gene99675.t1 |
| Gene Sequence |
| Protein sequence |
