AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046441.t1 MTR_4g129860 71.875 160 42 2 6 162 27 186 5.60e-81 239
MS.gene046441.t1 MTR_4g129850 70.064 157 45 1 6 160 27 183 1.34e-80 238
MS.gene046441.t1 MTR_0194s0040 68.627 153 48 0 7 159 41 193 4.92e-75 224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046441.t1 AT2G23820 77.622 143 32 0 20 162 80 222 2.10e-80 238
MS.gene046441.t1 AT2G23820 77.622 143 32 0 20 162 80 222 3.64e-80 238
MS.gene046441.t1 AT1G26160 68.553 159 42 1 1 159 65 215 5.37e-76 228
MS.gene046441.t1 AT1G26160 66.443 149 42 1 1 149 65 205 1.93e-68 207

Find 45 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGGTCCTTGACAAATT+TGG 0.177402 2.2:+32567743 None:intergenic
TCAATTTAGGTGTGTCAAAA+TGG 0.249596 2.2:-32568155 MS.gene046441:intron
TCCTTGACAAATTTGGCTTC+TGG 0.302864 2.2:+32567750 None:intergenic
TTTATCTTACAGCAATTGTT+GGG 0.346868 2.2:-32568013 MS.gene046441:intron
TATGTATCGCATGGGTTTGA+TGG 0.393567 2.2:-32568340 MS.gene046441:CDS
AGGAGAAGAAGGAGTGGTGA+TGG 0.407280 2.2:+32568565 None:intergenic
CTTTATCTTACAGCAATTGT+TGG 0.413282 2.2:-32568014 MS.gene046441:intron
AACTTATCTCGGTCGACGCC+AGG 0.422001 2.2:+32568297 None:intergenic
ATTTGTCAAGGACCTTGATA+AGG 0.434537 2.2:-32567739 MS.gene046441:intron
GGGGACATAACGCCGATAGA+TGG 0.441459 2.2:-32567993 MS.gene046441:CDS
CTTCTTCATATTCCAAGGCT+TGG 0.442580 2.2:+32566603 None:intergenic
CCACAACTCAGCAATTTCCT+TGG 0.443412 2.2:+32567797 None:intergenic
GAGGAAGGAGAAGGAGAAGA+AGG 0.444649 2.2:+32568554 None:intergenic
CTTCATATTCCAAGGCTTGG+AGG 0.445647 2.2:+32566606 None:intergenic
GCGAAAAGAGGTTCAGAATC+CGG 0.457454 2.2:-32568379 MS.gene046441:CDS
ATATGATCCGCTACAGATTC+CGG 0.464731 2.2:+32568360 None:intergenic
CTCACCTTCTTCATATTCCA+AGG 0.497793 2.2:+32566598 None:intergenic
AGCAGGATGGTTGCGAAAAG+AGG 0.512647 2.2:-32568391 MS.gene046441:CDS
GGAGATGATCCTCCAAGCCT+TGG 0.513734 2.2:-32566615 MS.gene046441:CDS
CTCGATTTGTCATCGCCTCA+AGG 0.519168 2.2:-32568516 MS.gene046441:intron
GAAGAGATATTAACTTATCT+CGG 0.521138 2.2:+32568286 None:intergenic
AGGAGAAGGAGAAGAAGGAG+TGG 0.531303 2.2:+32568559 None:intergenic
GATCATATGTGTAAAGTGCT+TGG 0.541181 2.2:-32567927 MS.gene046441:CDS
ACGACGAGAACAAGAAGCAC+TGG 0.544305 2.2:-32567949 MS.gene046441:CDS
AGAAAATCAATTGCTGAGGA+AGG 0.546944 2.2:+32568539 None:intergenic
AGCGGATCATATGTATCGCA+TGG 0.548823 2.2:-32568349 MS.gene046441:CDS
CCAAGGAAATTGCTGAGTTG+TGG 0.554797 2.2:-32567797 MS.gene046441:CDS
ATGTGTAAAGTGCTTGGAGG+TGG 0.558256 2.2:-32567921 MS.gene046441:CDS
CGGTCGACGCCAGGAAAATG+AGG 0.562848 2.2:+32568306 None:intergenic
AACATCCACAAACCTTATCA+AGG 0.563248 2.2:+32567727 None:intergenic
TCCAGAAGCCAAATTTGTCA+AGG 0.579287 2.2:-32567751 MS.gene046441:CDS
TCAATTGCTGAGGAAGGAGA+AGG 0.581466 2.2:+32568545 None:intergenic
CAAGCCTTGGAATATGAAGA+AGG 0.591196 2.2:-32566602 MS.gene046441:CDS
AAACAGACAACAAAACGAGC+AGG 0.599330 2.2:-32568408 MS.gene046441:intron
GTGCTTGGAGGTGGATCTAG+AGG 0.602978 2.2:-32567912 MS.gene046441:intron
TTATCTTACAGCAATTGTTG+GGG 0.614388 2.2:-32568012 MS.gene046441:intron
CGAGAGAAAATCAATTGCTG+AGG 0.617412 2.2:+32568535 None:intergenic
GCGGATCATATGTATCGCAT+GGG 0.625670 2.2:-32568348 MS.gene046441:CDS
ATTGTTCATGATATCGCAGA+AGG 0.628157 2.2:-32568130 MS.gene046441:intron
GGAAATTGCTGAGTTGTGGA+CGG 0.640826 2.2:-32567793 MS.gene046441:CDS
CATATGTGTAAAGTGCTTGG+AGG 0.648647 2.2:-32567924 MS.gene046441:CDS
TCAGAATCCGGAATCTGTAG+CGG 0.653088 2.2:-32568367 MS.gene046441:CDS
GGTGATGGATGATTCTGCGT+GGG 0.653152 2.2:+32568580 None:intergenic
AGACAACAAAACGAGCAGGA+TGG 0.671807 2.2:-32568404 MS.gene046441:CDS
TGGTGATGGATGATTCTGCG+TGG 0.673329 2.2:+32568579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATACTCAATTATTTAAT+GGG - chr2.2:32566956-32566975 MS.gene046441:intron 15.0%
!! AATAGTTAAAATCATTGAAA+AGG + chr2.2:32567517-32567536 None:intergenic 15.0%
!! TAAGATACTCAATTATTTAA+TGG - chr2.2:32566955-32566974 MS.gene046441:intron 15.0%
!! ATTTAAAAATCCCACTTATT+AGG - chr2.2:32568274-32568293 MS.gene046441:intron 20.0%
!! CTGTATAGATCAAAATTTAA+AGG + chr2.2:32568536-32568555 None:intergenic 20.0%
!! CTTTCAATGATTTATTTATG+AGG - chr2.2:32567481-32567500 MS.gene046441:intron 20.0%
!! TAGAAAAGAATACAAAGTTA+AGG + chr2.2:32567741-32567760 None:intergenic 20.0%
!! TTATATGCTGTTAAATCTTT+AGG - chr2.2:32567549-32567568 MS.gene046441:intron 20.0%
!!! CTTTAAATTTTGATCTATAC+AGG - chr2.2:32568534-32568553 MS.gene046441:CDS 20.0%
!!! TTAATCTAAAACCAAAATGA+TGG + chr2.2:32568469-32568488 None:intergenic 20.0%
!!! TTTGTATAAATCCATCATTT+TGG - chr2.2:32568455-32568474 MS.gene046441:intron 20.0%
!!! TTTTTCTTCTTCTTCAATTT+AGG - chr2.2:32567005-32567024 MS.gene046441:intron 20.0%
! AAAAAACACTACCAAATTAG+TGG + chr2.2:32567903-32567922 None:intergenic 25.0%
! ATTTATACAAAGTAATGGTC+CGG + chr2.2:32568446-32568465 None:intergenic 25.0%
! CTCAAAAAATACAATGACTT+AGG + chr2.2:32568024-32568043 None:intergenic 25.0%
! GAAGAGATATTAACTTATCT+CGG + chr2.2:32566890-32566909 None:intergenic 25.0%
! GTTAAATCTTTAGGCTTATT+GGG - chr2.2:32567558-32567577 MS.gene046441:intron 25.0%
! TAACAAAGAAACAATGCATA+GGG + chr2.2:32567608-32567627 None:intergenic 25.0%
! TCATTCTTACACTATCTATA+GGG - chr2.2:32567664-32567683 MS.gene046441:intron 25.0%
! TGTTAAATCTTTAGGCTTAT+TGG - chr2.2:32567557-32567576 MS.gene046441:intron 25.0%
! TTAAAGGATTCAAGTAACTA+GGG + chr2.2:32568520-32568539 None:intergenic 25.0%
! TTCATTCTTACACTATCTAT+AGG - chr2.2:32567663-32567682 MS.gene046441:intron 25.0%
! TTTAAAGGATTCAAGTAACT+AGG + chr2.2:32568521-32568540 None:intergenic 25.0%
! TTTATCTTACAGCAATTGTT+GGG - chr2.2:32567160-32567179 MS.gene046441:intron 25.0%
!! AAGTGGGATTTTTAAATCTA+GGG + chr2.2:32568271-32568290 None:intergenic 25.0%
!! GATGGATTTATACAAAGTAA+TGG + chr2.2:32568451-32568470 None:intergenic 25.0%
!! TAAGTGGGATTTTTAAATCT+AGG + chr2.2:32568272-32568291 None:intergenic 25.0%
!! TGTTTTCTTTTCTTTCATGT+GGG - chr2.2:32567071-32567090 MS.gene046441:intron 25.0%
!! TTGTTTTCTTTTCTTTCATG+TGG - chr2.2:32567070-32567089 MS.gene046441:intron 25.0%
!!! ATTAGTTTGTTATGAACCTA+GGG - chr2.2:32567780-32567799 MS.gene046441:CDS 25.0%
!!! TAAATTTTGATCTATACAGG+TGG - chr2.2:32568537-32568556 MS.gene046441:CDS 25.0%
!!! TATTAGTTTGTTATGAACCT+AGG - chr2.2:32567779-32567798 MS.gene046441:CDS 25.0%
!!! TTTTTTTGAGAAAGCATAAG+AGG - chr2.2:32567920-32567939 MS.gene046441:CDS 25.0%
AAGTTAAGGTGACAAAATGT+CGG + chr2.2:32567727-32567746 None:intergenic 30.0%
AATACAATGACTTAGGACTT+TGG + chr2.2:32568017-32568036 None:intergenic 30.0%
ACAGGTTTGATAAAATCTAC+TGG + chr2.2:32568410-32568429 None:intergenic 30.0%
CTTTATCTTACAGCAATTGT+TGG - chr2.2:32567159-32567178 MS.gene046441:intron 30.0%
GTAACAAAGAAACAATGCAT+AGG + chr2.2:32567609-32567628 None:intergenic 30.0%
GTTTATCATGACATTGTGAA+AGG + chr2.2:32566912-32566931 None:intergenic 30.0%
TCAATTTAGGTGTGTCAAAA+TGG - chr2.2:32567018-32567037 MS.gene046441:intron 30.0%
TCCAAACATAGATAAGTAAC+AGG + chr2.2:32567113-32567132 None:intergenic 30.0%
TTATCTTACAGCAATTGTTG+GGG - chr2.2:32567161-32567180 MS.gene046441:intron 30.0%
TTTGTTACACATAGACATAG+AGG - chr2.2:32567621-32567640 MS.gene046441:intron 30.0%
! CTTTGTTTAGGAGTTAATAG+GGG - chr2.2:32567842-32567861 MS.gene046441:intron 30.0%
! TCCTGTTACTTATCTATGTT+TGG - chr2.2:32567109-32567128 MS.gene046441:intron 30.0%
! TTTGAGTTCCTCCATATTAT+GGG - chr2.2:32568038-32568057 MS.gene046441:intron 30.0%
!! GCTTTGTTTAGGAGTTAATA+GGG - chr2.2:32567841-32567860 MS.gene046441:intron 30.0%
!!! AATGAAAAGGAGTGTTTTTG+AGG - chr2.2:32567865-32567884 MS.gene046441:intron 30.0%
!!! ATGAAAAGGAGTGTTTTTGA+GGG - chr2.2:32567866-32567885 MS.gene046441:intron 30.0%
!!! TCTTTTGGAATTCCATCTAT+CGG + chr2.2:32567195-32567214 None:intergenic 30.0%
!!! TTTTGAGTTCCTCCATATTA+TGG - chr2.2:32568037-32568056 MS.gene046441:intron 30.0%
AACATCCACAAACCTTATCA+AGG + chr2.2:32567449-32567468 None:intergenic 35.0%
AACTCCTAAACAAAGCCTAA+CGG + chr2.2:32567837-32567856 None:intergenic 35.0%
AGAAAATCAATTGCTGAGGA+AGG + chr2.2:32566637-32566656 None:intergenic 35.0%
AGCACCAATGTTATGAACAT+AGG - chr2.2:32568187-32568206 MS.gene046441:intron 35.0%
ATCAAAACCCCATAATATGG+AGG + chr2.2:32568049-32568068 None:intergenic 35.0%
ATCAAGGTCCTTGACAAATT+TGG + chr2.2:32567433-32567452 None:intergenic 35.0%
ATTGTTCATGATATCGCAGA+AGG - chr2.2:32567043-32567062 MS.gene046441:intron 35.0%
ATTTGTCAAGGACCTTGATA+AGG - chr2.2:32567434-32567453 MS.gene046441:intron 35.0%
GAGGAATCATTCCACTAATT+TGG - chr2.2:32567889-32567908 MS.gene046441:intron 35.0%
GAGTTAATAGGGGAATGAAA+AGG - chr2.2:32567852-32567871 MS.gene046441:intron 35.0%
TGATAAGGTTTGTGGATGTT+TGG - chr2.2:32567449-32567468 MS.gene046441:intron 35.0%
TGGATCAAAACCCCATAATA+TGG + chr2.2:32568052-32568071 None:intergenic 35.0%
TTGAGTTCCTCCATATTATG+GGG - chr2.2:32568039-32568058 MS.gene046441:intron 35.0%
! ACTTTGTTTGGGAGTTTGTA+GGG + chr2.2:32568109-32568128 None:intergenic 35.0%
! CATTTTCAACAATGAAGCCA+AGG - chr2.2:32567359-32567378 MS.gene046441:intron 35.0%
! GATCATATGTGTAAAGTGCT+TGG - chr2.2:32567246-32567265 MS.gene046441:intron 35.0%
! TTTTTACGAGTCCCAAATTG+AGG + chr2.2:32568307-32568326 None:intergenic 35.0%
!! GGCTTTGTTTAGGAGTTAAT+AGG - chr2.2:32567840-32567859 MS.gene046441:intron 35.0%
!! TCGTTATGTTTTTGACCTTG+AGG + chr2.2:32566675-32566694 None:intergenic 35.0%
!!! ACCTGTCAAATAGTTTTGTC+CGG - chr2.2:32568424-32568443 MS.gene046441:intron 35.0%
!!! TGAAAAGGAGTGTTTTTGAG+GGG - chr2.2:32567867-32567886 MS.gene046441:intron 35.0%
AAACAGACAACAAAACGAGC+AGG - chr2.2:32566765-32566784 MS.gene046441:intron 40.0%
AAACTCCCAAACAAAGTCGT+AGG - chr2.2:32568112-32568131 MS.gene046441:intron 40.0%
AAGGACCTTGATAAGGTTTG+TGG - chr2.2:32567441-32567460 MS.gene046441:intron 40.0%
ACAATGACTTAGGACTTTGG+AGG + chr2.2:32568014-32568033 None:intergenic 40.0%
ATATGATCCGCTACAGATTC+CGG + chr2.2:32566816-32566835 None:intergenic 40.0%
CAAGCCTTGGAATATGAAGA+AGG - chr2.2:32568571-32568590 MS.gene046441:CDS 40.0%
CAATGACTTAGGACTTTGGA+GGG + chr2.2:32568013-32568032 None:intergenic 40.0%
CGAGAGAAAATCAATTGCTG+AGG + chr2.2:32566641-32566660 None:intergenic 40.0%
CTCACCTTCTTCATATTCCA+AGG + chr2.2:32568578-32568597 None:intergenic 40.0%
CTTCTTCATATTCCAAGGCT+TGG + chr2.2:32568573-32568592 None:intergenic 40.0%
TATGTATCGCATGGGTTTGA+TGG - chr2.2:32566833-32566852 MS.gene046441:intron 40.0%
TCCAGAAGCCAAATTTGTCA+AGG - chr2.2:32567422-32567441 MS.gene046441:intron 40.0%
TCCGGACAAAACTATTTGAC+AGG + chr2.2:32568428-32568447 None:intergenic 40.0%
TGATAAAATCTACTGGCAGC+AGG + chr2.2:32568403-32568422 None:intergenic 40.0%
TGGGCCTATGTTCATAACAT+TGG + chr2.2:32568194-32568213 None:intergenic 40.0%
! ACATTGGTGCTTTCATTGAG+AGG + chr2.2:32568178-32568197 None:intergenic 40.0%
! AGTAGGCTAGTCATTTGTGA+TGG + chr2.2:32568227-32568246 None:intergenic 40.0%
! CATATGTGTAAAGTGCTTGG+AGG - chr2.2:32567249-32567268 MS.gene046441:intron 40.0%
! CGTCGTCTTTTCTCTTCTTT+TGG + chr2.2:32567210-32567229 None:intergenic 40.0%
! CTTTGTTTGGGAGTTTGTAG+GGG + chr2.2:32568108-32568127 None:intergenic 40.0%
! GACTTTGTTTGGGAGTTTGT+AGG + chr2.2:32568110-32568129 None:intergenic 40.0%
! GTAGGCTAGTCATTTGTGAT+GGG + chr2.2:32568226-32568245 None:intergenic 40.0%
! TCCTTGACAAATTTGGCTTC+TGG + chr2.2:32567426-32567445 None:intergenic 40.0%
! TCTCACCTACGACTTTGTTT+GGG + chr2.2:32568120-32568139 None:intergenic 40.0%
! TCTTTTCTTTCATGTGGGAG+TGG - chr2.2:32567076-32567095 MS.gene046441:intron 40.0%
!! AAATGACTAGCCTACTAGGT+GGG - chr2.2:32568231-32568250 MS.gene046441:intron 40.0%
!! ATGGGGTTTTGATCCAATGA+AGG - chr2.2:32568056-32568075 MS.gene046441:intron 40.0%
!! TCACAAATGACTAGCCTACT+AGG - chr2.2:32568227-32568246 MS.gene046441:intron 40.0%
!! TGGGGTTTTGATCCAATGAA+GGG - chr2.2:32568057-32568076 MS.gene046441:intron 40.0%
!! TGTGCTTTTTGTCTTCTCGA+AGG - chr2.2:32568327-32568346 MS.gene046441:CDS 40.0%
!!! AGATTTTTTCCCCCCTTCAT+TGG + chr2.2:32568072-32568091 None:intergenic 40.0%
AGACAACAAAACGAGCAGGA+TGG - chr2.2:32566769-32566788 MS.gene046441:intron 45.0%
AGCGGATCATATGTATCGCA+TGG - chr2.2:32566824-32566843 MS.gene046441:intron 45.0%
AGGAGTGACGCCTAATAAGT+GGG + chr2.2:32568287-32568306 None:intergenic 45.0%
CCAAGGAAATTGCTGAGTTG+TGG - chr2.2:32567376-32567395 MS.gene046441:intron 45.0%
CCACAACTCAGCAATTTCCT+TGG + chr2.2:32567379-32567398 None:intergenic 45.0%
CTCTCACCTACGACTTTGTT+TGG + chr2.2:32568121-32568140 None:intergenic 45.0%
CTTCATATTCCAAGGCTTGG+AGG + chr2.2:32568570-32568589 None:intergenic 45.0%
GCGAAAAGAGGTTCAGAATC+CGG - chr2.2:32566794-32566813 MS.gene046441:intron 45.0%
GCGGATCATATGTATCGCAT+GGG - chr2.2:32566825-32566844 MS.gene046441:intron 45.0%
GGAAATTGCTGAGTTGTGGA+CGG - chr2.2:32567380-32567399 MS.gene046441:intron 45.0%
TAGGCGTCACTCCTCAATTT+GGG - chr2.2:32568293-32568312 MS.gene046441:intron 45.0%
TAGGTGAGAGAACCCTTTGT+GGG - chr2.2:32568131-32568150 MS.gene046441:CDS 45.0%
TCAATTGCTGAGGAAGGAGA+AGG + chr2.2:32566631-32566650 None:intergenic 45.0%
TCAGAATCCGGAATCTGTAG+CGG - chr2.2:32566806-32566825 MS.gene046441:intron 45.0%
TTAGGCGTCACTCCTCAATT+TGG - chr2.2:32568292-32568311 MS.gene046441:intron 45.0%
TTTGGGAGTTTGTAGGGGAA+GGG + chr2.2:32568103-32568122 None:intergenic 45.0%
! ACGAACGAACGCTGATTGAT+TGG - chr2.2:32566695-32566714 MS.gene046441:intron 45.0%
! ATGTGTAAAGTGCTTGGAGG+TGG - chr2.2:32567252-32567271 MS.gene046441:intron 45.0%
! CTCATTGCTCCTCATTTTCC+TGG - chr2.2:32566858-32566877 MS.gene046441:intron 45.0%
! TAGACTCTCGTTTTGTCCCT+AGG + chr2.2:32567799-32567818 None:intergenic 45.0%
!! CAAATGACTAGCCTACTAGG+TGG - chr2.2:32568230-32568249 MS.gene046441:intron 45.0%
!! GGGGTTTTGATCCAATGAAG+GGG - chr2.2:32568058-32568077 MS.gene046441:intron 45.0%
!! GGGTTTTGATCCAATGAAGG+GGG - chr2.2:32568059-32568078 MS.gene046441:intron 45.0%
!! GGTTTTGATCCAATGAAGGG+GGG - chr2.2:32568060-32568079 MS.gene046441:intron 45.0%
!! TGGTCCGTTAGGCTTTGTTT+AGG - chr2.2:32567830-32567849 MS.gene046441:intron 45.0%
!! TTGTGATGGGCTCTCTCTTT+GGG + chr2.2:32568213-32568232 None:intergenic 45.0%
!! TTTGTGATGGGCTCTCTCTT+TGG + chr2.2:32568214-32568233 None:intergenic 45.0%
!!! AAAGGAGTGTTTTTGAGGGG+AGG - chr2.2:32567870-32567889 MS.gene046441:intron 45.0%
AGCAGGATGGTTGCGAAAAG+AGG - chr2.2:32566782-32566801 MS.gene046441:intron 50.0%
AGCCTACTAGGTGGGATTGT+GGG - chr2.2:32568239-32568258 MS.gene046441:intron 50.0%
AGGAGAAGAAGGAGTGGTGA+TGG + chr2.2:32566611-32566630 None:intergenic 50.0%
AGGAGAAGGAGAAGAAGGAG+TGG + chr2.2:32566617-32566636 None:intergenic 50.0%
CTTTCATGTGGGAGTGGAGT+GGG - chr2.2:32567082-32567101 MS.gene046441:intron 50.0%
GAGAGTCTACCCCAAAAGAC+TGG - chr2.2:32567810-32567829 MS.gene046441:intron 50.0%
GAGGAAGGAGAAGGAGAAGA+AGG + chr2.2:32566622-32566641 None:intergenic 50.0%
GAGGAGTGACGCCTAATAAG+TGG + chr2.2:32568288-32568307 None:intergenic 50.0%
GTAGGTGAGAGAACCCTTTG+TGG - chr2.2:32568130-32568149 MS.gene046441:intron 50.0%
GTTTGGGAGTTTGTAGGGGA+AGG + chr2.2:32568104-32568123 None:intergenic 50.0%
TAGCCTACTAGGTGGGATTG+TGG - chr2.2:32568238-32568257 MS.gene046441:intron 50.0%
TCTTTCATGTGGGAGTGGAG+TGG - chr2.2:32567081-32567100 MS.gene046441:intron 50.0%
TTTCATGTGGGAGTGGAGTG+GGG - chr2.2:32567083-32567102 MS.gene046441:intron 50.0%
! ACGACGAGAACAAGAAGCAC+TGG - chr2.2:32567224-32567243 MS.gene046441:intron 50.0%
! CTCGATTTGTCATCGCCTCA+AGG - chr2.2:32566657-32566676 MS.gene046441:intron 50.0%
!! AGCCTAACGGACCAGTCTTT+TGG + chr2.2:32567824-32567843 None:intergenic 50.0%
!! CCTAACGGACCAGTCTTTTG+GGG + chr2.2:32567822-32567841 None:intergenic 50.0%
!! GCCTAACGGACCAGTCTTTT+GGG + chr2.2:32567823-32567842 None:intergenic 50.0%
!! GGTGATGGATGATTCTGCGT+GGG + chr2.2:32566596-32566615 None:intergenic 50.0%
!! TGGTGATGGATGATTCTGCG+TGG + chr2.2:32566597-32566616 None:intergenic 50.0%
AACTTATCTCGGTCGACGCC+AGG + chr2.2:32566879-32566898 None:intergenic 55.0%
AGGAAGAGGGCTACCCACAA+AGG + chr2.2:32568147-32568166 None:intergenic 55.0%
CTCCCACAATCCCACCTAGT+AGG + chr2.2:32568244-32568263 None:intergenic 55.0%
GAGTTTGTAGGGGAAGGGAG+GGG + chr2.2:32568098-32568117 None:intergenic 55.0%
GGAAGAGGGCTACCCACAAA+GGG + chr2.2:32568146-32568165 None:intergenic 55.0%
GGAGATGATCCTCCAAGCCT+TGG - chr2.2:32568558-32568577 MS.gene046441:CDS 55.0%
GGAGTTTGTAGGGGAAGGGA+GGG + chr2.2:32568099-32568118 None:intergenic 55.0%
GGGGACATAACGCCGATAGA+TGG - chr2.2:32567180-32567199 MS.gene046441:intron 55.0%
GTGCTTGGAGGTGGATCTAG+AGG - chr2.2:32567261-32567280 MS.gene046441:intron 55.0%
TTCATTGAGAGGCCGACCTC+AGG + chr2.2:32568167-32568186 None:intergenic 55.0%
! CCCCAAAAGACTGGTCCGTT+AGG - chr2.2:32567819-32567838 MS.gene046441:intron 55.0%
AGAGGCCGACCTCAGGAAGA+GGG + chr2.2:32568160-32568179 None:intergenic 60.0%
CGGTCGACGCCAGGAAAATG+AGG + chr2.2:32566870-32566889 None:intergenic 60.0%
GGGAGTTTGTAGGGGAAGGG+AGG + chr2.2:32568100-32568119 None:intergenic 60.0%
GGTAGCCCTCTTCCTGAGGT+CGG - chr2.2:32568152-32568171 MS.gene046441:intron 60.0%
TGTGGGTAGCCCTCTTCCTG+AGG - chr2.2:32568148-32568167 MS.gene046441:CDS 60.0%
TTTGTAGGGGAAGGGAGGGG+AGG + chr2.2:32568095-32568114 None:intergenic 60.0%
GAGAGGCCGACCTCAGGAAG+AGG + chr2.2:32568161-32568180 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 32566589 32568606 32566589 ID=MS.gene046441
chr2.2 mRNA 32566589 32568606 32566589 ID=MS.gene046441.t1;Parent=MS.gene046441
chr2.2 exon 32568517 32568606 32568517 ID=MS.gene046441.t1.exon1;Parent=MS.gene046441.t1
chr2.2 CDS 32568517 32568606 32568517 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
chr2.2 exon 32568300 32568424 32568300 ID=MS.gene046441.t1.exon2;Parent=MS.gene046441.t1
chr2.2 CDS 32568300 32568424 32568300 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
chr2.2 exon 32568131 32568168 32568131 ID=MS.gene046441.t1.exon3;Parent=MS.gene046441.t1
chr2.2 CDS 32568131 32568168 32568131 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
chr2.2 exon 32567913 32568023 32567913 ID=MS.gene046441.t1.exon4;Parent=MS.gene046441.t1
chr2.2 CDS 32567913 32568023 32567913 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
chr2.2 exon 32567740 32567819 32567740 ID=MS.gene046441.t1.exon5;Parent=MS.gene046441.t1
chr2.2 CDS 32567740 32567819 32567740 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
chr2.2 exon 32566589 32566639 32566589 ID=MS.gene046441.t1.exon6;Parent=MS.gene046441.t1
chr2.2 CDS 32566589 32566639 32566589 ID=cds.MS.gene046441.t1;Parent=MS.gene046441.t1
Gene Sequence

>MS.gene046441

ATGGCCCACGCAGAATCATCCATCACCACTCCTTCTTCTCCTTCTCCTTCCTCAGCAATTGATTTTCTCTCGATTTGTCATCGCCTCAAGGTCAAAAACATAACGAACGAACGAACGCTGATTGATTGGTTGATTGATTATTCTGCTAACTTTTTGTGTGTTTTGAATGTGAAATGAAACAGACAACAAAACGAGCAGGATGGTTGCGAAAAGAGGTTCAGAATCCGGAATCTGTAGCGGATCATATGTATCGCATGGGTTTGATGGCTCTCATTGCTCCTCATTTTCCTGGCGTCGACCGAGATAAGTTAATATCTCTTCCTTTCACAATGTCATGATAAACTCGAATAAGTCAATTCAATTGTTTAAGATACTCAATTATTTAATGGGTATGTTTTCTCATACTTAGTTTCATTTTTTTCTTCTTCTTCAATTTAGGTGTGTCAAAATGGCTATTGTTCATGATATCGCAGAAGGTGCGTTGTTTTCTTTTCTTTCATGTGGGAGTGGAGTGGGGTTGTCCTGTTACTTATCTATGTTTGGAATCAGATGTATAATGACTTTAGAGTACTTTATCTTACAGCAATTGTTGGGGACATAACGCCGATAGATGGAATTCCAAAAGAAGAGAAAAGACGACGAGAACAAGAAGCACTGGATCATATGTGTAAAGTGCTTGGAGGTGGATCTAGAGGTACTTTAGTATTTAATCATTCATTCTTTTTGTTTTTGAGAAAACAAATTATATTCACTTGTATTGATTCTCAATACATTTTCAACAATGAAGCCAAGGAAATTGCTGAGTTGTGGACGGAATATGAAGCAAATTCTTCTCCAGAAGCCAAATTTGTCAAGGACCTTGATAAGGTTTGTGGATGTTTGGCTATTCTGTCTTTCAATGATTTATTTATGAGGTTTTAGTGTACCTTTTCAATGATTTTAACTATTAGTTTCTCTTCTTTATATGCTGTTAAATCTTTAGGCTTATTGGGATATTTTCTTCTCTATTTCAACTTCCCTATGCATTGTTTCTTTGTTACACATAGACATAGAGGCATATCATTTGTCATTTATTTCATTCTTACACTATCTATAGGGAAAAACACTGTATAAATATCAATGTGACAATTCTTTACCGACATTTTGTCACCTTAACTTTGTATTCTTTTCTAGCAATTTTTTATTACATATATTAGTTTGTTATGAACCTAGGGACAAAACGAGAGTCTACCCCAAAAGACTGGTCCGTTAGGCTTTGTTTAGGAGTTAATAGGGGAATGAAAAGGAGTGTTTTTGAGGGGAGGAATCATTCCACTAATTTGGTAGTGTTTTTTTTTTGAGAAAGCATAAGAGGAGAACACATATAACTGATATTCGAGAATATTATAAAGAGATGAGAGTGTTAGAAAATTTATTCAAAACCCTCCAAAGTCCTAAGTCATTGTATTTTTTGAGTTCCTCCATATTATGGGGTTTTGATCCAATGAAGGGGGGAAAAAATCTCCTCCCCTCCCTTCCCCTACAAACTCCCAAACAAAGTCGTAGGTGAGAGAACCCTTTGTGGGTAGCCCTCTTCCTGAGGTCGGCCTCTCAATGAAAGCACCAATGTTATGAACATAGGCCCAAAGAGAGAGCCCATCACAAATGACTAGCCTACTAGGTGGGATTGTGGGAGAACTCCCTAGATTTAAAAATCCCACTTATTAGGCGTCACTCCTCAATTTGGGACTCGTAAAAATGTGCTTTTTGTCTTCTCGAAGGACTTACAAAACGAAGACAACAAATAAGTAACAAAGTTCATCTTTTATGCTCCTGCTGCCAGTAGATTTTATCAAACCTGTCAAATAGTTTTGTCCGGACCATTACTTTGTATAAATCCATCATTTTGGTTTTAGATTAAATTTATCTTAGTTTCTTCTCTTGAATGTCCCTAGTTACTTGAATCCTTTAAATTTTGATCTATACAGGTGGAGATGATCCTCCAAGCCTTGGAATATGAAGAAGGTGAGATATTTTAG
Protein sequence

>MS.gene046441.t1

MAHAESSITTPSSPSPSSAIDFLSICHRLKTTKRAGWLRKEVQNPESVADHMYRMGLMALIAPHFPGVDRDKCVKMAIVHDIAEAIVGDITPIDGIPKEEKRRREQEALDHMCKVLGGGSRAKEIAELWTEYEANSSPEAKFVKDLDKVEMILQALEYEEGEIF