AlfalfaGEDB | MS.gene043044

M. sativa cultivar XinJiangDaYe / MS.gene043044

KEGG: K14509
GO: GO:0000155 GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005789 GO:0006793 GO:0006796 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0031090 GO:0035556 GO:0038023 GO:0038199 GO:0042221 GO:0042562 GO:0044237 GO:0050789 GO:0050794 GO:0050896 GO:0051740 GO:0060089 GO:0065007 GO:0072328 GO:0110165 GO:0140096 GO:0140299
PFAM: PF00072.27 PF00512.28 PF01590.29 PF02518.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043044.t1	AES87618.2	98.1	741	14	0	1	741	50	790	0.00E+00	1408.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043044.t1	O81122	84.2	741	116	1	2	741	1	741	0.0e+00	1216.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043044.t1	G7JKV2	98.1	741	14	0	1	741	50	790	0.0e+00	1408.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene043044.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene027808	MS.gene043044	PPI
MS.gene027810	MS.gene043044	PPI
MS.gene043044	MS.gene053206	PPI
MS.gene043044	MS.gene070887	PPI
MS.gene043044	MS.gene97518	PPI
MS.gene043044	MS.gene069138	PPI
MS.gene043044	MS.gene068602	PPI
MS.gene044915	MS.gene043044	PPI
MS.gene062402	MS.gene043044	PPI
MS.gene068604	MS.gene043044	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043044.t1	MTR_4g031150	98.111	741	14	0	1	741	50	790	0.0	1501
MS.gene043044.t1	MTR_7g109150	73.920	625	159	2	1	623	1	623	0.0	909
MS.gene043044.t1	MTR_1g073840	41.711	748	403	18	5	739	29	756	3.77e-175	521
MS.gene043044.t1	MTR_7g116330	39.386	749	413	16	5	734	34	760	8.71e-164	491
MS.gene043044.t1	MTR_1g079790	37.949	751	428	18	3	734	26	757	1.39e-155	470
MS.gene043044.t1	MTR_1g044210	37.416	743	443	13	5	735	28	760	1.36e-151	460
MS.gene043044.t1	MTR_1g079790	38.704	571	328	11	3	561	26	586	2.86e-119	371
MS.gene043044.t1	MTR_3g085130	28.650	363	210	7	335	655	438	793	3.35e-35	144
MS.gene043044.t1	MTR_3g085130	33.884	121	72	3	612	724	903	1023	8.83e-12	69.3
MS.gene043044.t1	MTR_3g085130	28.650	363	210	7	335	655	228	583	5.26e-35	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043044.t1	AT1G66340	80.000	740	142	3	2	739	1	736	0.0	1212
MS.gene043044.t1	AT2G40940	70.439	592	175	0	2	593	1	592	0.0	847
MS.gene043044.t1	AT3G23150	38.553	760	410	18	5	732	32	766	2.21e-150	457
MS.gene043044.t1	AT3G04580	37.987	745	439	15	4	733	26	762	1.00e-148	452
MS.gene043044.t1	AT3G04580	37.987	745	439	15	4	733	26	762	1.00e-148	452
MS.gene043044.t1	AT3G23150	43.212	523	274	11	5	516	32	542	3.11e-125	387
MS.gene043044.t1	AT1G04310	38.966	503	282	9	5	492	34	526	1.42e-96	313
MS.gene043044.t1	AT1G04310	38.966	503	282	9	5	492	34	526	1.42e-96	313
MS.gene043044.t1	AT5G10720	33.220	295	160	8	323	600	339	613	4.13e-37	150
MS.gene043044.t1	AT1G27320	26.667	465	288	10	304	728	410	861	1.00e-35	145

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Find 148 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGACTCTTGTTGAACT+CGG	0.650784	4.2:-73923828	MS.gene043044:CDS
AAAGAGAACTGTTTGAGAGC+TGG	0.562595	4.2:-73920750	MS.gene043044:CDS
AAATAAAAGTGGCCATCACT+TGG	0.516449	4.2:+73922546	None:intergenic
AAATCATCTGCTGGCCATTG+TGG	0.550408	4.2:+73924293	None:intergenic
AAATTAGAAAGATTTAGGAG+AGG	0.591308	4.2:+73923561	None:intergenic
AACTAGAAGCTATGCTTTGA+TGG	0.293229	4.2:-73923511	MS.gene043044:CDS
AAGAAACTGGTCGACATGTT+AGG	0.407386	4.2:-73923899	MS.gene043044:CDS
AAGGCCAAGCCCACTTCCAA+CGG	0.521714	4.2:+73922320	None:intergenic
AAGGGGCTTCTTATGCATTT+AGG	0.246758	4.2:-73920966	MS.gene043044:CDS
AAGTGGCCATCACTTGGTAC+TGG	0.531856	4.2:+73922552	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTAAATAAAGCAAACC+AGG	+	chr4.2:73921615-73921634	None:intergenic	30.0%
AAATTTCACAACTGAAGGTA+CGG	+	chr4.2:73923065-73923084	None:intergenic	30.0%
AAGTAAGTCTATCTACATCA+AGG	-	chr4.2:73923225-73923244	MS.gene043044:CDS	30.0%
AATACTGTTCACAGTTTAAC+AGG	-	chr4.2:73923399-73923418	MS.gene043044:intron	30.0%
AATCAGGAAATCTAATATCG+CGG	+	chr4.2:73922396-73922415	None:intergenic	30.0%
AATCTTAGAAGAGTCAATGA+GGG	-	chr4.2:73921735-73921754	MS.gene043044:intron	30.0%
AATGGATCTACAAACATTTC+CGG	-	chr4.2:73922990-73923009	MS.gene043044:CDS	30.0%
ATTAGTTATGAGACAAGCAA+GGG	+	chr4.2:73923949-73923968	None:intergenic	30.0%
CAAATTCTTCTCAATGTTGT+TGG	-	chr4.2:73922301-73922320	MS.gene043044:intron	30.0%
CAACAGGTTTAATCAAGTTA+AGG	+	chr4.2:73922198-73922217	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	73920653	73924342	73920653	ID=MS.gene043044
chr4.2	mRNA	73920653	73924342	73920653	ID=MS.gene043044.t1;Parent=MS.gene043044
chr4.2	exon	73923434	73924342	73923434	ID=MS.gene043044.t1.exon1;Parent=MS.gene043044.t1
chr4.2	CDS	73923434	73924342	73923434	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2	exon	73922918	73923286	73922918	ID=MS.gene043044.t1.exon2;Parent=MS.gene043044.t1
chr4.2	CDS	73922918	73923286	73922918	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2	exon	73922536	73922802	73922536	ID=MS.gene043044.t1.exon3;Parent=MS.gene043044.t1
chr4.2	CDS	73922536	73922802	73922536	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2	exon	73922306	73922433	73922306	ID=MS.gene043044.t1.exon4;Parent=MS.gene043044.t1
chr4.2	CDS	73922306	73922433	73922306	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2	exon	73921953	73922150	73921953	ID=MS.gene043044.t1.exon5;Parent=MS.gene043044.t1
chr4.2	CDS	73921953	73922150	73921953	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2	exon	73920653	73921007	73920653	ID=MS.gene043044.t1.exon6;Parent=MS.gene043044.t1
chr4.2	CDS	73920653	73921007	73920653	ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1

Gene Sequence

>MS.gene043044

ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATATATATCAGATTTCTTCATTGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGCGCCTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCAATTGTAATGACCACCGCCAAGGTTTTAACTGCTGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGTTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACGCATGAGATTAGAAGTACTCTTGATAGACATACAATACTGAAAACGACTCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCAACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGCGACAACAGAACCCTGTTGGATATACAGTTCCTATTAACCTTCCTGTGATCAATCATGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGACCAGGTTAGTAATTTTCCATTTTACTCGGTTTCCTTTCTAGTGTATTGTTTACACCTGGTTTGCTTTATTTACGTTTATTAGACTAAAACTGTTTTACATGAATATGTCTGTCTGTCATTCATTACTTCTTACTATTATCTCCTACACCAGGTAGCTGTTGCCCTTTCGCATGCTGCAATCTTAGAAGAGTCAATGAGGGCTAGGGATCAACTCATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCGATTCATGCTCGCAACGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATCTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTAAAAAGCAGCAATTTATTAGCTACACTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAGCGTTTAACCTTCATTCATTGTTTAGAGAGGTAAAATTTTCGCCTAAATCCCGAAAAATTCAACTTTATTAGTCTGACTAGTAGCTTATGATCTTTGAGTTTCTTCAGAAGCTTGATGTTGTTAGATTTGCTATTCTGATTGCAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCAGTGCATGCGATTGGTGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCCGTGGTTGTTGTAAAGCCTGAATCCTTCCGCGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATGGCCACTTTTATTTGCGAGTACAGGTATGTTTCGTCAAGCTTTACTAGTTTTCTTCTGTTTTGGTATATTGTATCGTCTGTTATCTGATTTCGAAGGTGGAATATATTTTGTTTTCCACAATATAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACGAAAAATCCCGTTGGAAGTGGGCTTGGCCTTGCAATTTGTAAAAGGTATTATATTCTTGTATAGTTACTGATATGATCATATTAATCTGTTTTCTATTCCTTGGTATATAGTATATTTACAAAATTAGAATTTGCGCTCTTCAATATTGGTATTTATGATTTTCTATTGATTGCGTTCGGTATCTTTAAATTGTGAGCAGGTTTGTGAATCTCATGGAAGGACATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGAACGTCCAAATGAACATAAACTACCTTACAAACCTAAAGCTCTAGTAAATAATGGATCTACAAACATTTCCGGTCTCAAGGTTCTTGTCATGGATGATAATGGGTCAGTAACAGCTTTATTTCCGTACCTTCAGTTGTGAAATTTGTTGCTATGTCTGGTGATTTTATAGAAAACTAAACTTAGGTTGATTTCTTACTTTAAGCCCCTACTTGGGCCACAATTATATTCTTGAAAGCATTATAATACTTATGTGCTGAATGCTCATATTGCTTACTACTAGTCCAAAGTAAGTCTATCTACATCAAGGTTTAGCTGCTAAACTTTTTAATTTACACTTCCTAAAAGCAATGTTTTAAAAACTGAATCTATCTGAGAGACATTTTGGTCATGGTTCACTGCATTAAACCACTCAAACCTGGACAAAACTGTGTTCTAAGTTCTAACCGTTCAAATAACTGAATACTGTTCACAGTTTAACAGGCTGAACTGTCTGGTTTGATTTGGTTTTTGAACATTGCCTAAAAGTAAACAAGTCTTATGGTATGTTTGGATACACGTTTCTCTCTCTCTTCTCACGTCCCAAGGCAATATTGCCGTGATTTTACAACTCCAAAATTCCTAGTTTCTAATCATTCATGCGTTTGAAAGTTGTTTCAACGTTGAAACAAACGGGCACTTAAGCATAGTCCTTGATGGGACATTATGGTTTTAGTTTGATTGATGTAGTTGACCCTACTTACTATGAAAAGACTTGGTGGTGGTTGTTGGTGTAACAAGCTTTAATACCATATCAAGCAATATTTCTAGTATAAATTTAAACTATTAGGTGAAGGTACCTGAATTTTTATTTGACAATTTGTATGTTCATTCACACTCACTTTATAGCCAGAAAAGAAAATATACATAATGCATGCAGTCTTCATTCAGTCTTCTACTCGCAATCTATGAAACTTGGAAGTCAGAAAAATTGTTTAGTGGCTGATGCATTTGCTGCGTTTACTCTTTCCCTTGCTTGTCTCATAACTAATGGTGAAACTTGTAATGCAGGGTGAGTAGGTCAGCGACAAAGGGGCTTCTTATGCATTTAGGATGCGACGTCACAACTGTAAGCTCAAGTGAAGAATGCATGCGTGTTGTTTCTCTGGAACACAAAGTGGTCTTTATGGATGTTTGTACAGGGTTAGATGGTTATGAATTAGCGGTTCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAACACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTGAATGGTGTAGTTTTAAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA

Protein sequence

>MS.gene043044.t1

MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISAFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDGHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQTLATKNPVGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPERPNEHKLPYKPKALVNNGSTNISGLKVLVMDDNGVSRSATKGLLMHLGCDVTTVSSSEECMRVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMKGVLTELLERRFVFETI