AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043044.t1 MTR_4g031150 98.111 741 14 0 1 741 50 790 0.0 1501
MS.gene043044.t1 MTR_7g109150 73.920 625 159 2 1 623 1 623 0.0 909
MS.gene043044.t1 MTR_1g073840 41.711 748 403 18 5 739 29 756 3.77e-175 521
MS.gene043044.t1 MTR_7g116330 39.386 749 413 16 5 734 34 760 8.71e-164 491
MS.gene043044.t1 MTR_1g079790 37.949 751 428 18 3 734 26 757 1.39e-155 470
MS.gene043044.t1 MTR_1g044210 37.416 743 443 13 5 735 28 760 1.36e-151 460
MS.gene043044.t1 MTR_1g079790 38.704 571 328 11 3 561 26 586 2.86e-119 371
MS.gene043044.t1 MTR_3g085130 28.650 363 210 7 335 655 438 793 3.35e-35 144
MS.gene043044.t1 MTR_3g085130 33.884 121 72 3 612 724 903 1023 8.83e-12 69.3
MS.gene043044.t1 MTR_3g085130 28.650 363 210 7 335 655 228 583 5.26e-35 143
MS.gene043044.t1 MTR_3g085130 33.884 121 72 3 612 724 693 813 8.79e-12 69.3
MS.gene043044.t1 MTR_8g080770 29.155 367 215 8 335 663 383 742 1.08e-34 142
MS.gene043044.t1 MTR_8g080770 34.711 121 68 4 614 724 840 959 2.71e-12 70.9
MS.gene043044.t1 MTR_8g080770 29.155 367 215 8 335 663 274 633 1.46e-34 141
MS.gene043044.t1 MTR_8g080770 34.711 121 68 4 614 724 731 850 2.97e-12 70.9
MS.gene043044.t1 MTR_3g105590 30.409 342 176 9 300 600 331 651 7.67e-33 136
MS.gene043044.t1 MTR_5g097410 29.310 348 201 5 338 646 611 952 2.91e-30 129
MS.gene043044.t1 MTR_5g022470 32.210 267 154 5 334 575 499 763 1.64e-29 126
MS.gene043044.t1 MTR_5g022470 32.210 267 154 5 334 575 499 763 1.89e-29 126
MS.gene043044.t1 MTR_8g075340 31.698 265 158 3 334 575 461 725 7.16e-29 124
MS.gene043044.t1 MTR_8g106150 28.571 364 200 7 338 646 377 735 4.69e-28 121
MS.gene043044.t1 MTR_8g106150 28.571 364 200 7 338 646 134 492 9.76e-28 120
MS.gene043044.t1 MTR_1g013360 38.095 147 88 2 348 493 380 524 5.73e-24 108
MS.gene043044.t1 MTR_1g087140 27.796 313 171 9 324 591 373 675 1.09e-17 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043044.t1 AT1G66340 80.000 740 142 3 2 739 1 736 0.0 1212
MS.gene043044.t1 AT2G40940 70.439 592 175 0 2 593 1 592 0.0 847
MS.gene043044.t1 AT3G23150 38.553 760 410 18 5 732 32 766 2.21e-150 457
MS.gene043044.t1 AT3G04580 37.987 745 439 15 4 733 26 762 1.00e-148 452
MS.gene043044.t1 AT3G04580 37.987 745 439 15 4 733 26 762 1.00e-148 452
MS.gene043044.t1 AT3G23150 43.212 523 274 11 5 516 32 542 3.11e-125 387
MS.gene043044.t1 AT1G04310 38.966 503 282 9 5 492 34 526 1.42e-96 313
MS.gene043044.t1 AT1G04310 38.966 503 282 9 5 492 34 526 1.42e-96 313
MS.gene043044.t1 AT5G10720 33.220 295 160 8 323 600 339 613 4.13e-37 150
MS.gene043044.t1 AT1G27320 26.667 465 288 10 304 728 410 861 1.00e-35 145
MS.gene043044.t1 AT5G35750 28.217 443 266 11 335 732 578 1013 1.85e-33 139
MS.gene043044.t1 AT2G17820 31.579 285 168 7 314 575 472 752 9.71e-30 127
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 455 805 1.62e-29 126
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 443 793 2.05e-29 125
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 443 793 2.05e-29 125
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 443 793 2.05e-29 125
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 443 793 2.05e-29 125
MS.gene043044.t1 AT2G01830 27.348 362 199 6 338 646 466 816 2.30e-29 125
MS.gene043044.t1 AT2G47430 29.167 312 175 12 318 592 373 675 5.55e-18 89.4
MS.gene043044.t1 AT4G16250 23.554 242 158 7 330 567 918 1136 1.71e-13 75.1
MS.gene043044.t1 AT2G18790 23.293 249 158 7 326 567 910 1132 8.29e-11 66.2

Find 148 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAACTTGTTTGTGTTTC+CGG 0.151506 4.2:+73920773 None:intergenic
TTTGAAAATTAGAAAGATTT+AGG 0.173765 4.2:+73923556 None:intergenic
GGAACACAAAGTGGTCTTTA+TGG 0.205815 4.2:-73920889 MS.gene043044:CDS
CAACACATCTAATTAATTTA+TGG 0.214479 4.2:-73924118 MS.gene043044:CDS
CCATTATTTACTAGAGCTTT+AGG 0.233442 4.2:+73922001 None:intergenic
AAGGGGCTTCTTATGCATTT+AGG 0.246758 4.2:-73920966 MS.gene043044:CDS
CTGGGGCAGTAGTTGCTATT+CGG 0.247378 4.2:-73923587 MS.gene043044:CDS
TTGGCCTTGCAATTTGTAAA+AGG 0.281289 4.2:-73922305 MS.gene043044:intron
CTAATATCGCGGAAGGATTC+AGG 0.288662 4.2:+73922591 None:intergenic
ATCTCATGGAAGGACATATT+TGG 0.289745 4.2:-73922120 MS.gene043044:CDS
AACTAGAAGCTATGCTTTGA+TGG 0.293229 4.2:-73923511 MS.gene043044:CDS
CTGCAGTATTTCCATATAGA+TGG 0.300370 4.2:-73924181 MS.gene043044:CDS
TTATGTTCATTTGGACGTTC+CGG 0.307737 4.2:+73922037 None:intergenic
AATGGATCTACAAACATTTC+CGG 0.308964 4.2:-73921983 MS.gene043044:CDS
GTTCTTGTCATGGATGATAA+TGG 0.309504 4.2:-73921953 MS.gene043044:CDS
CCTAAAGCTCTAGTAAATAA+TGG 0.328259 4.2:-73922001 MS.gene043044:CDS
TTCATCTTCTCAACAGAAAC+AGG 0.336907 4.2:+73920705 None:intergenic
TGAACAAGGACCCATCTATA+TGG 0.340257 4.2:+73924170 None:intergenic
AGCTCTCAAACAGTTCTCTT+TGG 0.340716 4.2:+73920752 None:intergenic
CAAATTCTTCTCAATGTTGT+TGG 0.342418 4.2:-73922672 MS.gene043044:CDS
TTGTGGCTCAATACAATTGC+AGG 0.351088 4.2:+73924310 None:intergenic
TACACTCGTCAACGATGTTT+TGG 0.351468 4.2:-73922992 MS.gene043044:CDS
TGAAGAAATCTGATATATAT+TGG 0.351613 4.2:+73924258 None:intergenic
CGGTAGAACTCTTGGGTTAG+AGG 0.352498 4.2:-73923808 MS.gene043044:CDS
CCACTTATAGTTGCTCTTAC+CGG 0.360015 4.2:-73920792 MS.gene043044:CDS
GCAAACTTAGTGAATAACTT+TGG 0.366968 4.2:+73922372 None:intergenic
CTTGGTACTGGTAGGAAATC+AGG 0.368046 4.2:+73922564 None:intergenic
GTCTTTATGGATGTTTGTAC+AGG 0.370740 4.2:-73920876 MS.gene043044:CDS
TTGATCACAGGAAGGTTAAT+AGG 0.374709 4.2:+73923696 None:intergenic
TATGTTCATTTGGACGTTCC+GGG 0.377366 4.2:+73922038 None:intergenic
TGAGGTCGTAATCTAGCAAC+TGG 0.378008 4.2:+73923627 None:intergenic
TAAGGTAGTTTATGTTCATT+TGG 0.378697 4.2:+73922028 None:intergenic
ATTCGTACGCAGGAAGAAAC+TGG 0.381848 4.2:-73923912 MS.gene043044:CDS
TGGGGCAGTAGTTGCTATTC+GGG 0.384904 4.2:-73923586 MS.gene043044:CDS
ACAATATAGGTAAAAGATTC+AGG 0.388522 4.2:-73922420 MS.gene043044:intron
GTTGAACTCGGTAGAACTCT+TGG 0.392589 4.2:-73923816 MS.gene043044:CDS
GCAGAATGTTGCACTTGATA+TGG 0.405382 4.2:-73923196 MS.gene043044:CDS
ATAGGAACTGTATATCCAAC+AGG 0.406408 4.2:+73923714 None:intergenic
AGATGGGTCCTTGTTCAGTT+TGG 0.406869 4.2:-73924164 MS.gene043044:CDS
CAACAGGTTTAATCAAGTTA+AGG 0.407192 4.2:+73922778 None:intergenic
AAGAAACTGGTCGACATGTT+AGG 0.407386 4.2:-73923899 MS.gene043044:CDS
GATGTTTGTACAGGGTTAGA+TGG 0.409988 4.2:-73920867 MS.gene043044:CDS
TGCGGAGCTTGATAGAGAAA+TGG 0.412888 4.2:-73923940 MS.gene043044:CDS
TGCACTCTCTTCATTGATGC+AGG 0.414560 4.2:-73923082 MS.gene043044:CDS
AATCCCGTTGGAAGTGGGCT+TGG 0.422457 4.2:-73922324 MS.gene043044:CDS
TGGATTGAAAGCGAAGGTAT+TGG 0.423019 4.2:-73922100 MS.gene043044:CDS
CGGTCTCAAGGTTCTTGTCA+TGG 0.425638 4.2:-73921963 MS.gene043044:CDS
TTCTTGTCATGGATGATAAT+GGG 0.431607 4.2:-73921952 MS.gene043044:intron
ATGCATGCGTGTTGTTTCTC+TGG 0.433592 4.2:-73920910 MS.gene043044:CDS
CATGCTGCAAAATACATGCC+TGG 0.434848 4.2:-73923606 MS.gene043044:CDS
TTGAACTCGGTAGAACTCTT+GGG 0.435191 4.2:-73923815 MS.gene043044:CDS
GAATAATATGTACAAGCATA+AGG 0.435805 4.2:+73924012 None:intergenic
ACTAGAGCTTTAGGTTTGTA+AGG 0.436633 4.2:+73922010 None:intergenic
TTATGGATGCCAACACGTAC+TGG 0.439199 4.2:-73923777 MS.gene043044:CDS
TAGGTAAAAGATTCAGGATC+AGG 0.440352 4.2:-73922414 MS.gene043044:CDS
GACTGCTGAGCAACGTCTAA+TGG 0.441775 4.2:-73923049 MS.gene043044:CDS
GGTTAGAGGAATGTGCGTTA+TGG 0.446709 4.2:-73923794 MS.gene043044:CDS
TAGAAGAGTCAATGAGGGCT+AGG 0.449726 4.2:-73923233 MS.gene043044:CDS
GCTGTTAAGTTCACAAAAGA+AGG 0.457297 4.2:-73922645 MS.gene043044:CDS
CAAACTTAGTGAATAACTTT+GGG 0.476701 4.2:+73922373 None:intergenic
CCTCTCTAAACAATGAATGA+AGG 0.477023 4.2:+73922917 None:intergenic
AGGCCAAGCCCACTTCCAAC+GGG 0.479593 4.2:+73922321 None:intergenic
GGTGAGTAGGTCAGCGACAA+AGG 0.486692 4.2:-73920985 MS.gene043044:CDS
GCGGAGCTTGATAGAGAAAT+GGG 0.487897 4.2:-73923939 MS.gene043044:CDS
ATGCTGCAAAATACATGCCT+GGG 0.488762 4.2:-73923605 MS.gene043044:CDS
GTGAGTAGGTCAGCGACAAA+GGG 0.499252 4.2:-73920984 MS.gene043044:CDS
TTCATCAATAAATCATCTGC+TGG 0.499714 4.2:+73924284 None:intergenic
AATAATATGTACAAGCATAA+GGG 0.501867 4.2:+73924013 None:intergenic
CATTGTAAAACTCGGAATCC+CGG 0.509775 4.2:-73922056 MS.gene043044:CDS
GATCTTTCACGGCTTGAAGA+TGG 0.509985 4.2:-73922970 MS.gene043044:CDS
TCATCACCAATCGCATGCAC+TGG 0.513305 4.2:+73922708 None:intergenic
AAATAAAAGTGGCCATCACT+TGG 0.516449 4.2:+73922546 None:intergenic
GTTAGATGGTTATGAATTAG+CGG 0.517611 4.2:-73920853 MS.gene043044:CDS
TGTTTGAGAGCTGGTGTGAA+TGG 0.520975 4.2:-73920741 MS.gene043044:CDS
AAGGCCAAGCCCACTTCCAA+CGG 0.521714 4.2:+73922320 None:intergenic
ACTTGTAATGCAGGGTGAGT+AGG 0.526253 4.2:-73920998 MS.gene043044:intron
GGCGCCTTCATAGTTCTATG+TGG 0.526944 4.2:-73924143 MS.gene043044:CDS
AAGTGGCCATCACTTGGTAC+TGG 0.531856 4.2:+73922552 None:intergenic
TACAAACATTTCCGGTCTCA+AGG 0.533295 4.2:-73921975 MS.gene043044:CDS
AATAACTTTGGGATGTCTTG+TGG 0.537838 4.2:+73922384 None:intergenic
CTAAGATTGCAGCATGCGAA+AGG 0.538313 4.2:+73923253 None:intergenic
CCGGTAAGAGCAACTATAAG+TGG 0.540920 4.2:+73920792 None:intergenic
GAAAGCGAAGGTATTGGTAA+AGG 0.545327 4.2:-73922094 MS.gene043044:CDS
AAATCATCTGCTGGCCATTG+TGG 0.550408 4.2:+73924293 None:intergenic
TAAGATTGCAGCATGCGAAA+GGG 0.550545 4.2:+73923254 None:intergenic
TGCAGTATTTCCATATAGAT+GGG 0.553503 4.2:-73924180 MS.gene043044:CDS
GCCACTTTCATTGTAAAACT+CGG 0.554108 4.2:-73922064 MS.gene043044:CDS
GAGGGCTAGGGATCAACTCA+TGG 0.554891 4.2:-73923220 MS.gene043044:CDS
CCTGTACTCGCAAATAAAAG+TGG 0.556232 4.2:+73922535 None:intergenic
CCTTCATTCATTGTTTAGAG+AGG 0.557200 4.2:-73922917 MS.gene043044:intron
TGTTTCTCTGGAACACAAAG+TGG 0.561245 4.2:-73920898 MS.gene043044:CDS
AAAGAGAACTGTTTGAGAGC+TGG 0.562595 4.2:-73920750 MS.gene043044:CDS
ACAAAGTAGATAAGCTCGAG+CGG 0.563726 4.2:+73924212 None:intergenic
TATGGATGCCAACACGTACT+GGG 0.565115 4.2:-73923776 MS.gene043044:CDS
TAGCTTCTAGTTGAAACCTC+AGG 0.568702 4.2:+73923522 None:intergenic
CGAATAGCAACTACTGCCCC+AGG 0.569883 4.2:+73923588 None:intergenic
GGTCGAGGTAGTTGCTGACC+AGG 0.570253 4.2:-73923433 MS.gene043044:intron
GATGCCAACACGTACTGGGT+TGG 0.573245 4.2:-73923772 MS.gene043044:CDS
TAACAGAACTCTTGGAGCGT+CGG 0.575513 4.2:-73920674 MS.gene043044:CDS
AATGGGTTTGATTCGTACGC+AGG 0.576988 4.2:-73923922 MS.gene043044:CDS
CTTTACAACAACCACGGCGA+TGG 0.577371 4.2:+73922614 None:intergenic
TGCTCCACATAGAACTATGA+AGG 0.577938 4.2:+73924139 None:intergenic
CACAGCAGTTAAAACCTTGG+CGG 0.579579 4.2:+73924052 None:intergenic
TCTTTATGGATGTTTGTACA+GGG 0.580421 4.2:-73920875 MS.gene043044:CDS
TGAAGGCGCCAAACTGAACA+AGG 0.580571 4.2:+73924156 None:intergenic
TTGCGACAACAGAACCCTGT+TGG 0.583160 4.2:-73923729 MS.gene043044:CDS
CAAAGTAGATAAGCTCGAGC+GGG 0.583205 4.2:+73924213 None:intergenic
AGGAAATCTAATATCGCGGA+AGG 0.585020 4.2:+73922584 None:intergenic
GAGCAGGTTTGTGAATCTCA+TGG 0.585691 4.2:-73922134 MS.gene043044:intron
AGAAGAGTCAATGAGGGCTA+GGG 0.586235 4.2:-73923232 MS.gene043044:CDS
TACCACAGCAGTTAAAACCT+TGG 0.586251 4.2:+73924049 None:intergenic
AAATTAGAAAGATTTAGGAG+AGG 0.591308 4.2:+73923561 None:intergenic
GCATGTACATGAGTTAGAGC+TGG 0.591900 4.2:-73923454 MS.gene043044:CDS
ATGTACAAGCATAAGGGCAG+TGG 0.596476 4.2:+73924019 None:intergenic
GATTTGCCAGTGCATGCGAT+TGG 0.597159 4.2:-73922714 MS.gene043044:CDS
CTAAATACATGATTGATCAC+AGG 0.597914 4.2:+73923684 None:intergenic
GGTTCTTGTATGAATTGTGA+AGG 0.598228 4.2:+73924094 None:intergenic
AATTGTAATGACCACCGCCA+AGG 0.606041 4.2:-73924066 MS.gene043044:CDS
CATGACAAGAACCTTGAGAC+CGG 0.606960 4.2:+73921964 None:intergenic
AGCAGTTAAAACCTTGGCGG+TGG 0.608870 4.2:+73924055 None:intergenic
CACTGTCTAGCACTATCAGA+TGG 0.612788 4.2:+73923477 None:intergenic
GGTGGTCATTACAATTGCCA+CGG 0.613246 4.2:+73924073 None:intergenic
TTCCTACCAGTACCAAGTGA+TGG 0.619110 4.2:-73922558 MS.gene043044:CDS
AGCTCCAACCCAGTACGTGT+TGG 0.621583 4.2:+73923768 None:intergenic
AGGTTTGTGAATCTCATGGA+AGG 0.621756 4.2:-73922130 MS.gene043044:CDS
CATATTTGGATTGAAAGCGA+AGG 0.630241 4.2:-73922106 MS.gene043044:CDS
GTTTCTGTTGAGAAGATGAA+AGG 0.632532 4.2:-73920702 MS.gene043044:CDS
GCAATTGTATTGAGCCACAA+TGG 0.634157 4.2:-73924307 MS.gene043044:CDS
TGCTGAGCAACGTCTAATGG+TGG 0.634295 4.2:-73923046 MS.gene043044:CDS
AGTGCAATAATTGCATGCAT+CGG 0.638531 4.2:+73923099 None:intergenic
CAATCTTAGAAGAGTCAATG+AGG 0.640685 4.2:-73923239 MS.gene043044:CDS
TTCAGGCTTTACAACAACCA+CGG 0.643393 4.2:+73922608 None:intergenic
TCAAATATATGATTGGCCTG+AGG 0.650243 4.2:-73923538 MS.gene043044:CDS
AAAACGACTCTTGTTGAACT+CGG 0.650784 4.2:-73923828 MS.gene043044:CDS
GCGGGATCGAGAAATAAGCA+AGG 0.660212 4.2:+73924231 None:intergenic
AATCAGGAAATCTAATATCG+CGG 0.661209 4.2:+73922580 None:intergenic
ACATGAGTTAGAGCTGGTCG+AGG 0.664742 4.2:-73923448 MS.gene043044:CDS
AATCTTAGAAGAGTCAATGA+GGG 0.666677 4.2:-73923238 MS.gene043044:CDS
AGGCAGCATTTCCATCGCCG+TGG 0.671963 4.2:-73922625 MS.gene043044:CDS
CGGGATCGAGAAATAAGCAA+GGG 0.679296 4.2:+73924232 None:intergenic
TGCTGCAAAATACATGCCTG+GGG 0.686693 4.2:-73923604 MS.gene043044:CDS
CACAATTCATACAAGAACCG+TGG 0.691719 4.2:-73924090 MS.gene043044:CDS
GGCCATCACTTGGTACTGGT+AGG 0.695660 4.2:+73922556 None:intergenic
TGAGTAGGTCAGCGACAAAG+GGG 0.699043 4.2:-73920983 MS.gene043044:CDS
ATACATGATTGATCACAGGA+AGG 0.702361 4.2:+73923688 None:intergenic
GAGGTCGTAATCTAGCAACT+GGG 0.705400 4.2:+73923628 None:intergenic
CATCTGATAGTGCTAGACAG+TGG 0.733689 4.2:-73923476 MS.gene043044:CDS
TAGGAACTGTATATCCAACA+GGG 0.735052 4.2:+73923715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATAAATTTAAACTATT+AGG - chr4.2:73923745-73923764 MS.gene043044:CDS 10.0%
!! AAATTGTCAAATAAAAATTC+AGG + chr4.2:73923779-73923798 None:intergenic 15.0%
!! TTTGAAAATTAGAAAGATTT+AGG + chr4.2:73921420-73921439 None:intergenic 15.0%
!!! ACTAATAAAGTTGAATTTTT+CGG + chr4.2:73922101-73922120 None:intergenic 15.0%
!!! ATTATGTATATTTTCTTTTC+TGG + chr4.2:73923829-73923848 None:intergenic 15.0%
!!! CTAATTTTCAAATATATGAT+TGG - chr4.2:73921428-73921447 MS.gene043044:intron 15.0%
!!! TTTTATAGAAAACTAAACTT+AGG - chr4.2:73923102-73923121 MS.gene043044:CDS 15.0%
!! AAATTTAAACTATTAGGTGA+AGG - chr4.2:73923751-73923770 MS.gene043044:CDS 20.0%
!! AATAATATGTACAAGCATAA+GGG + chr4.2:73920963-73920982 None:intergenic 20.0%
!! CAACACATCTAATTAATTTA+TGG - chr4.2:73920855-73920874 MS.gene043044:CDS 20.0%
!! TGAAGAAATCTGATATATAT+TGG + chr4.2:73920718-73920737 None:intergenic 20.0%
!! TGTAAATATACTATATACCA+AGG + chr4.2:73922746-73922765 None:intergenic 20.0%
!!! AGAATTATTTTTGAAGAACA+AGG - chr4.2:73921009-73921028 MS.gene043044:intron 20.0%
!!! AGTTTTAACACTTAATAGAT+CGG + chr4.2:73920987-73921006 None:intergenic 20.0%
!!! CTAATAAAGTTGAATTTTTC+GGG + chr4.2:73922100-73922119 None:intergenic 20.0%
!!! GTTTTTAAAACATTGCTTTT+AGG + chr4.2:73923281-73923300 None:intergenic 20.0%
!!! TAGTAATTTTCCATTTTACT+CGG - chr4.2:73921564-73921583 MS.gene043044:intron 20.0%
!!! TATTTTGTTTTCCACAATAT+AGG - chr4.2:73922540-73922559 MS.gene043044:CDS 20.0%
! AAAATGGAAAATTACTAACC+TGG + chr4.2:73921561-73921580 None:intergenic 25.0%
! AAATTAGAAAGATTTAGGAG+AGG + chr4.2:73921415-73921434 None:intergenic 25.0%
! AAGTCAGAAAAATTGTTTAG+TGG - chr4.2:73923896-73923915 MS.gene043044:CDS 25.0%
! ACAATATAGGTAAAAGATTC+AGG - chr4.2:73922553-73922572 MS.gene043044:CDS 25.0%
! ACAGTATTCAGTTATTTGAA+CGG + chr4.2:73923387-73923406 None:intergenic 25.0%
! ACTAGAAATATTGCTTGATA+TGG + chr4.2:73923729-73923748 None:intergenic 25.0%
! CAAACTTAGTGAATAACTTT+GGG + chr4.2:73922603-73922622 None:intergenic 25.0%
! CTAAAAGTAAACAAGTCTTA+TGG - chr4.2:73923459-73923478 MS.gene043044:CDS 25.0%
! GAATAATATGTACAAGCATA+AGG + chr4.2:73920964-73920983 None:intergenic 25.0%
! TAAGGTAGTTTATGTTCATT+TGG + chr4.2:73922948-73922967 None:intergenic 25.0%
! TGCTTTCAAGAATATAATTG+TGG + chr4.2:73923158-73923177 None:intergenic 25.0%
!! AAGTCTTTTCATAGTAAGTA+GGG + chr4.2:73923674-73923693 None:intergenic 25.0%
!! AATACCTTTTACAAATTGCA+AGG + chr4.2:73922675-73922694 None:intergenic 25.0%
!! TGAATCTTTTACCTATATTG+TGG + chr4.2:73922554-73922573 None:intergenic 25.0%
!! TGATTAGAAACTAGGAATTT+TGG + chr4.2:73923553-73923572 None:intergenic 25.0%
!! TTAATCTGTTTTCTATTCCT+TGG - chr4.2:73922726-73922745 MS.gene043044:CDS 25.0%
!!! ATTTTGGAGTTGTAAAATCA+CGG + chr4.2:73923537-73923556 None:intergenic 25.0%
!!! CATAAGACTTGTTTACTTTT+AGG + chr4.2:73923461-73923480 None:intergenic 25.0%
!!! GTTTTAACACTTAATAGATC+GGG + chr4.2:73920986-73921005 None:intergenic 25.0%
!!! TTACTAGTTTTCTTCTGTTT+TGG - chr4.2:73922477-73922496 MS.gene043044:intron 25.0%
AAACGTAAATAAAGCAAACC+AGG + chr4.2:73921615-73921634 None:intergenic 30.0%
AAATTTCACAACTGAAGGTA+CGG + chr4.2:73923065-73923084 None:intergenic 30.0%
AAGTAAGTCTATCTACATCA+AGG - chr4.2:73923225-73923244 MS.gene043044:CDS 30.0%
AATACTGTTCACAGTTTAAC+AGG - chr4.2:73923399-73923418 MS.gene043044:intron 30.0%
AATCAGGAAATCTAATATCG+CGG + chr4.2:73922396-73922415 None:intergenic 30.0%
AATCTTAGAAGAGTCAATGA+GGG - chr4.2:73921735-73921754 MS.gene043044:intron 30.0%
AATGGATCTACAAACATTTC+CGG - chr4.2:73922990-73923009 MS.gene043044:CDS 30.0%
ATTAGTTATGAGACAAGCAA+GGG + chr4.2:73923949-73923968 None:intergenic 30.0%
CAAATTCTTCTCAATGTTGT+TGG - chr4.2:73922301-73922320 MS.gene043044:intron 30.0%
CAACAGGTTTAATCAAGTTA+AGG + chr4.2:73922198-73922217 None:intergenic 30.0%
CCATTATTTACTAGAGCTTT+AGG + chr4.2:73922975-73922994 None:intergenic 30.0%
CTAAATACATGATTGATCAC+AGG + chr4.2:73921292-73921311 None:intergenic 30.0%
CTACTTACTATGAAAAGACT+TGG - chr4.2:73923673-73923692 MS.gene043044:CDS 30.0%
GCAAACTTAGTGAATAACTT+TGG + chr4.2:73922604-73922623 None:intergenic 30.0%
GTGTAAACAATACACTAGAA+AGG + chr4.2:73921593-73921612 None:intergenic 30.0%
GTTAGATGGTTATGAATTAG+CGG - chr4.2:73924120-73924139 MS.gene043044:CDS 30.0%
TCTTTATGGATGTTTGTACA+GGG - chr4.2:73924098-73924117 MS.gene043044:CDS 30.0%
TGATGTAGATAGACTTACTT+TGG + chr4.2:73923225-73923244 None:intergenic 30.0%
TGCAGTATTTCCATATAGAT+GGG - chr4.2:73920793-73920812 MS.gene043044:CDS 30.0%
TGTTTCAACGTTGAAACAAA+CGG - chr4.2:73923590-73923609 MS.gene043044:CDS 30.0%
TTCATCAATAAATCATCTGC+TGG + chr4.2:73920692-73920711 None:intergenic 30.0%
TTCTTGTCATGGATGATAAT+GGG - chr4.2:73923021-73923040 MS.gene043044:CDS 30.0%
! AACAAGTCTTATGGTATGTT+TGG - chr4.2:73923468-73923487 MS.gene043044:CDS 30.0%
! AATCTATCTGAGAGACATTT+TGG - chr4.2:73923303-73923322 MS.gene043044:intron 30.0%
! CAAGTCTTTTCATAGTAAGT+AGG + chr4.2:73923675-73923694 None:intergenic 30.0%
! CCTAAAGCTCTAGTAAATAA+TGG - chr4.2:73922972-73922991 MS.gene043044:CDS 30.0%
! GATTTTTCGTTGCTAATGTT+TGG + chr4.2:73922633-73922652 None:intergenic 30.0%
!! GATTTTCTATTGATTGCGTT+CGG - chr4.2:73922802-73922821 MS.gene043044:intron 30.0%
!!! AGTTGAATTTTTCGGGATTT+AGG + chr4.2:73922093-73922112 None:intergenic 30.0%
!!! TCGATGAAATTTTAACTGCA+CGG + chr4.2:73921321-73921340 None:intergenic 30.0%
AAAACCATAATGTCCCATCA+AGG + chr4.2:73923631-73923650 None:intergenic 35.0%
AAAACGACTCTTGTTGAACT+CGG - chr4.2:73921145-73921164 MS.gene043044:intron 35.0%
AAATAAAAGTGGCCATCACT+TGG + chr4.2:73922430-73922449 None:intergenic 35.0%
AACTAGAAGCTATGCTTTGA+TGG - chr4.2:73921462-73921481 MS.gene043044:intron 35.0%
AATATAATTGTGGCCCAAGT+AGG + chr4.2:73923148-73923167 None:intergenic 35.0%
AATGGTGAAACTTGTAATGC+AGG - chr4.2:73923966-73923985 MS.gene043044:CDS 35.0%
ACTTAAGCATAGTCCTTGAT+GGG - chr4.2:73923615-73923634 MS.gene043044:CDS 35.0%
AGAAAGGAAACCGAGTAAAA+TGG + chr4.2:73921577-73921596 None:intergenic 35.0%
AGTGCAATAATTGCATGCAT+CGG + chr4.2:73921877-73921896 None:intergenic 35.0%
ATACATGATTGATCACAGGA+AGG + chr4.2:73921288-73921307 None:intergenic 35.0%
ATAGGAACTGTATATCCAAC+AGG + chr4.2:73921262-73921281 None:intergenic 35.0%
ATATAATTGTGGCCCAAGTA+GGG + chr4.2:73923147-73923166 None:intergenic 35.0%
ATCTCATGGAAGGACATATT+TGG - chr4.2:73922853-73922872 MS.gene043044:intron 35.0%
ATGGTGAAACTTGTAATGCA+GGG - chr4.2:73923967-73923986 MS.gene043044:CDS 35.0%
CAATCTTAGAAGAGTCAATG+AGG - chr4.2:73921734-73921753 MS.gene043044:intron 35.0%
CATATTTGGATTGAAAGCGA+AGG - chr4.2:73922867-73922886 MS.gene043044:intron 35.0%
CATTAGTTATGAGACAAGCA+AGG + chr4.2:73923950-73923969 None:intergenic 35.0%
CCTCTCTAAACAATGAATGA+AGG + chr4.2:73922059-73922078 None:intergenic 35.0%
CCTTCATTCATTGTTTAGAG+AGG - chr4.2:73922056-73922075 MS.gene043044:CDS 35.0%
CGCATGAATGATTAGAAACT+AGG + chr4.2:73923561-73923580 None:intergenic 35.0%
CTGCAGTATTTCCATATAGA+TGG - chr4.2:73920792-73920811 MS.gene043044:CDS 35.0%
CTTACTATGAAAAGACTTGG+TGG - chr4.2:73923676-73923695 MS.gene043044:CDS 35.0%
CTTGCTTGTCTCATAACTAA+TGG - chr4.2:73923948-73923967 MS.gene043044:CDS 35.0%
GAATTTGCGCTCTTCAATAT+TGG - chr4.2:73922772-73922791 MS.gene043044:CDS 35.0%
GCAACAAATTTCACAACTGA+AGG + chr4.2:73923070-73923089 None:intergenic 35.0%
GCTGTTAAGTTCACAAAAGA+AGG - chr4.2:73922328-73922347 MS.gene043044:CDS 35.0%
GGTATCTTTAAATTGTGAGC+AGG - chr4.2:73922823-73922842 MS.gene043044:intron 35.0%
GGTTCTTGTATGAATTGTGA+AGG + chr4.2:73920882-73920901 None:intergenic 35.0%
GTCTTTATGGATGTTTGTAC+AGG - chr4.2:73924097-73924116 MS.gene043044:CDS 35.0%
GTTCTTGTCATGGATGATAA+TGG - chr4.2:73923020-73923039 MS.gene043044:CDS 35.0%
GTTTCAACGTTGAAACAAAC+GGG - chr4.2:73923591-73923610 MS.gene043044:CDS 35.0%
GTTTCTGTTGAGAAGATGAA+AGG - chr4.2:73924271-73924290 MS.gene043044:CDS 35.0%
TACTCGCAATCTATGAAACT+TGG - chr4.2:73923873-73923892 MS.gene043044:CDS 35.0%
TAGGAACTGTATATCCAACA+GGG + chr4.2:73921261-73921280 None:intergenic 35.0%
TAGGTAAAAGATTCAGGATC+AGG - chr4.2:73922559-73922578 MS.gene043044:CDS 35.0%
TCTAGTGTATTGTTTACACC+TGG - chr4.2:73921594-73921613 MS.gene043044:intron 35.0%
TTACTATTATCTCCTACACC+AGG - chr4.2:73921687-73921706 MS.gene043044:intron 35.0%
TTATGTTCATTTGGACGTTC+CGG + chr4.2:73922939-73922958 None:intergenic 35.0%
TTCATCTTCTCAACAGAAAC+AGG + chr4.2:73924271-73924290 None:intergenic 35.0%
TTGATCACAGGAAGGTTAAT+AGG + chr4.2:73921280-73921299 None:intergenic 35.0%
! AGCTTTTTAACAGATGCAAC+AGG + chr4.2:73922214-73922233 None:intergenic 35.0%
! GCCACTTTCATTGTAAAACT+CGG - chr4.2:73922909-73922928 MS.gene043044:intron 35.0%
! TCCGAGTTTTACAATGAAAG+TGG + chr4.2:73922913-73922932 None:intergenic 35.0%
!! AATAACTTTGGGATGTCTTG+TGG + chr4.2:73922592-73922611 None:intergenic 35.0%
!! ACGATGTTTTGGATCTTTCA+CGG - chr4.2:73921992-73922011 MS.gene043044:CDS 35.0%
!! ACTAGAGCTTTAGGTTTGTA+AGG + chr4.2:73922966-73922985 None:intergenic 35.0%
!! AGATTTGCTATTCTGATTGC+AGG - chr4.2:73922171-73922190 MS.gene043044:intron 35.0%
!! ATTTTTGAAGAACAAGGCTG+CGG - chr4.2:73921015-73921034 MS.gene043044:intron 35.0%
!! GTGAAATTTGTTGCTATGTC+TGG - chr4.2:73923076-73923095 MS.gene043044:CDS 35.0%
!! TCAAATATATGATTGGCCTG+AGG - chr4.2:73921435-73921454 MS.gene043044:intron 35.0%
!! TTGGCCTTGCAATTTGTAAA+AGG - chr4.2:73922668-73922687 MS.gene043044:CDS 35.0%
!!! AGGTGTTTTAACAGAACTCT+TGG - chr4.2:73924291-73924310 MS.gene043044:CDS 35.0%
AAAGAGAACTGTTTGAGAGC+TGG - chr4.2:73924223-73924242 MS.gene043044:CDS 40.0%
AAATCACGGCAATATTGCCT+TGG + chr4.2:73923523-73923542 None:intergenic 40.0%
AAGAAACTGGTCGACATGTT+AGG - chr4.2:73921074-73921093 MS.gene043044:intron 40.0%
AAGGGGCTTCTTATGCATTT+AGG - chr4.2:73924007-73924026 MS.gene043044:CDS 40.0%
AATCACGGCAATATTGCCTT+GGG + chr4.2:73923522-73923541 None:intergenic 40.0%
ACAAAGTAGATAAGCTCGAG+CGG + chr4.2:73920764-73920783 None:intergenic 40.0%
AGCTCTCAAACAGTTCTCTT+TGG + chr4.2:73924224-73924243 None:intergenic 40.0%
AGGAAATCTAATATCGCGGA+AGG + chr4.2:73922392-73922411 None:intergenic 40.0%
AGGTTTGTGAATCTCATGGA+AGG - chr4.2:73922843-73922862 MS.gene043044:intron 40.0%
ATGCTGCAAAATACATGCCT+GGG - chr4.2:73921368-73921387 MS.gene043044:intron 40.0%
CACAATTCATACAAGAACCG+TGG - chr4.2:73920883-73920902 MS.gene043044:CDS 40.0%
CACTTAAGCATAGTCCTTGA+TGG - chr4.2:73923614-73923633 MS.gene043044:CDS 40.0%
CATTGTAAAACTCGGAATCC+CGG - chr4.2:73922917-73922936 MS.gene043044:intron 40.0%
CCACTTATAGTTGCTCTTAC+CGG - chr4.2:73924181-73924200 MS.gene043044:CDS 40.0%
CCTGTACTCGCAAATAAAAG+TGG + chr4.2:73922441-73922460 None:intergenic 40.0%
CGTCTGTTATCTGATTTCGA+AGG - chr4.2:73922510-73922529 MS.gene043044:intron 40.0%
CTGTTATCTGATTTCGAAGG+TGG - chr4.2:73922513-73922532 MS.gene043044:intron 40.0%
CTTACTTTAAGCCCCTACTT+GGG - chr4.2:73923132-73923151 MS.gene043044:CDS 40.0%
GATGTTTGTACAGGGTTAGA+TGG - chr4.2:73924106-73924125 MS.gene043044:CDS 40.0%
GCAATTGTATTGAGCCACAA+TGG - chr4.2:73920666-73920685 MS.gene043044:CDS 40.0%
GCAGAATGTTGCACTTGATA+TGG - chr4.2:73921777-73921796 MS.gene043044:intron 40.0%
GGAACACAAAGTGGTCTTTA+TGG - chr4.2:73924084-73924103 MS.gene043044:CDS 40.0%
TAAGATTGCAGCATGCGAAA+GGG + chr4.2:73921722-73921741 None:intergenic 40.0%
TACAAACATTTCCGGTCTCA+AGG - chr4.2:73922998-73923017 MS.gene043044:CDS 40.0%
TACCACAGCAGTTAAAACCT+TGG + chr4.2:73920927-73920946 None:intergenic 40.0%
TAGTCCTTGATGGGACATTA+TGG - chr4.2:73923624-73923643 MS.gene043044:CDS 40.0%
TATAATTGTGGCCCAAGTAG+GGG + chr4.2:73923146-73923165 None:intergenic 40.0%
TATGTTCATTTGGACGTTCC+GGG + chr4.2:73922938-73922957 None:intergenic 40.0%
TCTTACTTTAAGCCCCTACT+TGG - chr4.2:73923131-73923150 MS.gene043044:CDS 40.0%
TGAACAAGGACCCATCTATA+TGG + chr4.2:73920806-73920825 None:intergenic 40.0%
TGCATTAAACCACTCAAACC+TGG - chr4.2:73923337-73923356 MS.gene043044:intron 40.0%
TGCTCCACATAGAACTATGA+AGG + chr4.2:73920837-73920856 None:intergenic 40.0%
TTAGCAACGAAAAATCCCGT+TGG - chr4.2:73922637-73922656 MS.gene043044:CDS 40.0%
TTCAGGCTTTACAACAACCA+CGG + chr4.2:73922368-73922387 None:intergenic 40.0%
TTGAACTCGGTAGAACTCTT+GGG - chr4.2:73921158-73921177 MS.gene043044:intron 40.0%
TTGTGGCTCAATACAATTGC+AGG + chr4.2:73920666-73920685 None:intergenic 40.0%
! CTGAACTGTCTGGTTTGATT+TGG - chr4.2:73923422-73923441 MS.gene043044:intron 40.0%
! GGTCAACTTGTTTGTGTTTC+CGG + chr4.2:73924203-73924222 None:intergenic 40.0%
! TACACTCGTCAACGATGTTT+TGG - chr4.2:73921981-73922000 MS.gene043044:CDS 40.0%
! TAGCTTCTAGTTGAAACCTC+AGG + chr4.2:73921454-73921473 None:intergenic 40.0%
! TGGATTGAAAGCGAAGGTAT+TGG - chr4.2:73922873-73922892 MS.gene043044:intron 40.0%
!! ACTATGAAAAGACTTGGTGG+TGG - chr4.2:73923679-73923698 MS.gene043044:CDS 40.0%
!! CCACTTTTATTTGCGAGTAC+AGG - chr4.2:73922438-73922457 MS.gene043044:intron 40.0%
!! CTTAGAACACAGTTTTGTCC+AGG + chr4.2:73923358-73923377 None:intergenic 40.0%
!! GAAAGCGAAGGTATTGGTAA+AGG - chr4.2:73922879-73922898 MS.gene043044:intron 40.0%
!! TCTGAGAGACATTTTGGTCA+TGG - chr4.2:73923309-73923328 MS.gene043044:intron 40.0%
!! TGTTTCTCTGGAACACAAAG+TGG - chr4.2:73924075-73924094 MS.gene043044:CDS 40.0%
AAATCATCTGCTGGCCATTG+TGG + chr4.2:73920683-73920702 None:intergenic 45.0%
AATTGTAATGACCACCGCCA+AGG - chr4.2:73920907-73920926 MS.gene043044:CDS 45.0%
ACGAAAAATCCCGTTGGAAG+TGG - chr4.2:73922643-73922662 MS.gene043044:CDS 45.0%
ACTTGTAATGCAGGGTGAGT+AGG - chr4.2:73923975-73923994 MS.gene043044:CDS 45.0%
AGAAGAGTCAATGAGGGCTA+GGG - chr4.2:73921741-73921760 MS.gene043044:intron 45.0%
AGATGGGTCCTTGTTCAGTT+TGG - chr4.2:73920809-73920828 MS.gene043044:CDS 45.0%
ATGTACAAGCATAAGGGCAG+TGG + chr4.2:73920957-73920976 None:intergenic 45.0%
ATTCGTACGCAGGAAGAAAC+TGG - chr4.2:73921061-73921080 MS.gene043044:intron 45.0%
CAAAGTAGATAAGCTCGAGC+GGG + chr4.2:73920763-73920782 None:intergenic 45.0%
CACAGCAGTTAAAACCTTGG+CGG + chr4.2:73920924-73920943 None:intergenic 45.0%
CACTGTCTAGCACTATCAGA+TGG + chr4.2:73921499-73921518 None:intergenic 45.0%
CATGACAAGAACCTTGAGAC+CGG + chr4.2:73923012-73923031 None:intergenic 45.0%
CATGCTGCAAAATACATGCC+TGG - chr4.2:73921367-73921386 MS.gene043044:intron 45.0%
CCGGTAAGAGCAACTATAAG+TGG + chr4.2:73924184-73924203 None:intergenic 45.0%
CGAAAAATCCCGTTGGAAGT+GGG - chr4.2:73922644-73922663 MS.gene043044:CDS 45.0%
CGGGATCGAGAAATAAGCAA+GGG + chr4.2:73920744-73920763 None:intergenic 45.0%
CTAAGATTGCAGCATGCGAA+AGG + chr4.2:73921723-73921742 None:intergenic 45.0%
CTAATATCGCGGAAGGATTC+AGG + chr4.2:73922385-73922404 None:intergenic 45.0%
GAGCAGGTTTGTGAATCTCA+TGG - chr4.2:73922839-73922858 MS.gene043044:intron 45.0%
GAGGTCGTAATCTAGCAACT+GGG + chr4.2:73921348-73921367 None:intergenic 45.0%
GATCTTTCACGGCTTGAAGA+TGG - chr4.2:73922003-73922022 MS.gene043044:CDS 45.0%
GCATGTACATGAGTTAGAGC+TGG - chr4.2:73921519-73921538 MS.gene043044:intron 45.0%
GCGGAGCTTGATAGAGAAAT+GGG - chr4.2:73921034-73921053 MS.gene043044:intron 45.0%
GGTGGTCATTACAATTGCCA+CGG + chr4.2:73920903-73920922 None:intergenic 45.0%
GGTTAGAGGAATGTGCGTTA+TGG - chr4.2:73921179-73921198 MS.gene043044:intron 45.0%
GTTGAACTCGGTAGAACTCT+TGG - chr4.2:73921157-73921176 MS.gene043044:intron 45.0%
GTTTAACAGGCTGAACTGTC+TGG - chr4.2:73923412-73923431 MS.gene043044:intron 45.0%
TAACAGAACTCTTGGAGCGT+CGG - chr4.2:73924299-73924318 MS.gene043044:CDS 45.0%
TAGAAGAGTCAATGAGGGCT+AGG - chr4.2:73921740-73921759 MS.gene043044:intron 45.0%
TATGGATGCCAACACGTACT+GGG - chr4.2:73921197-73921216 MS.gene043044:intron 45.0%
TGAGGTCGTAATCTAGCAAC+TGG + chr4.2:73921349-73921368 None:intergenic 45.0%
TGCACTCTCTTCATTGATGC+AGG - chr4.2:73921891-73921910 MS.gene043044:intron 45.0%
TGCGGAGCTTGATAGAGAAA+TGG - chr4.2:73921033-73921052 MS.gene043044:intron 45.0%
TGCTGCAAAATACATGCCTG+GGG - chr4.2:73921369-73921388 MS.gene043044:intron 45.0%
TGTTTGAGAGCTGGTGTGAA+TGG - chr4.2:73924232-73924251 MS.gene043044:CDS 45.0%
TTATGGATGCCAACACGTAC+TGG - chr4.2:73921196-73921215 MS.gene043044:intron 45.0%
TTCCTACCAGTACCAAGTGA+TGG - chr4.2:73922415-73922434 MS.gene043044:intron 45.0%
! AATGGGTTTGATTCGTACGC+AGG - chr4.2:73921051-73921070 MS.gene043044:intron 45.0%
! CATCTGATAGTGCTAGACAG+TGG - chr4.2:73921497-73921516 MS.gene043044:intron 45.0%
! GGCATGTATTTTGCAGCATG+AGG + chr4.2:73921367-73921386 None:intergenic 45.0%
! TCATGCTCGCAACGACTTTT+TGG - chr4.2:73921825-73921844 MS.gene043044:intron 45.0%
!! AAAGACTTGGTGGTGGTTGT+TGG - chr4.2:73923686-73923705 MS.gene043044:CDS 45.0%
!! ATGCATGCGTGTTGTTTCTC+TGG - chr4.2:73924063-73924082 MS.gene043044:CDS 45.0%
!! CAGTTTTGTCCAGGTTTGAG+TGG + chr4.2:73923349-73923368 None:intergenic 45.0%
!! CTTGGTACTGGTAGGAAATC+AGG + chr4.2:73922412-73922431 None:intergenic 45.0%
AAGTGGCCATCACTTGGTAC+TGG + chr4.2:73922424-73922443 None:intergenic 50.0%
ACATGAGTTAGAGCTGGTCG+AGG - chr4.2:73921525-73921544 MS.gene043044:intron 50.0%
AGCAGTTAAAACCTTGGCGG+TGG + chr4.2:73920921-73920940 None:intergenic 50.0%
CGGTCTCAAGGTTCTTGTCA+TGG - chr4.2:73923010-73923029 MS.gene043044:CDS 50.0%
CTTTACAACAACCACGGCGA+TGG + chr4.2:73922362-73922381 None:intergenic 50.0%
GACTGCTGAGCAACGTCTAA+TGG - chr4.2:73921924-73921943 MS.gene043044:intron 50.0%
GATTTGCCAGTGCATGCGAT+TGG - chr4.2:73922259-73922278 MS.gene043044:intron 50.0%
GCGGGATCGAGAAATAAGCA+AGG + chr4.2:73920745-73920764 None:intergenic 50.0%
GTGAGTAGGTCAGCGACAAA+GGG - chr4.2:73923989-73924008 MS.gene043044:CDS 50.0%
TCATCACCAATCGCATGCAC+TGG + chr4.2:73922268-73922287 None:intergenic 50.0%
TGAGTAGGTCAGCGACAAAG+GGG - chr4.2:73923990-73924009 MS.gene043044:CDS 50.0%
TGCTGAGCAACGTCTAATGG+TGG - chr4.2:73921927-73921946 MS.gene043044:intron 50.0%
TTGCGACAACAGAACCCTGT+TGG - chr4.2:73921244-73921263 MS.gene043044:intron 50.0%
! CGGTAGAACTCTTGGGTTAG+AGG - chr4.2:73921165-73921184 MS.gene043044:intron 50.0%
! CTGGGGCAGTAGTTGCTATT+CGG - chr4.2:73921386-73921405 MS.gene043044:intron 50.0%
! GGCGCCTTCATAGTTCTATG+TGG - chr4.2:73920830-73920849 MS.gene043044:CDS 50.0%
! TGGGGCAGTAGTTGCTATTC+GGG - chr4.2:73921387-73921406 MS.gene043044:intron 50.0%
!! TGAAGGCGCCAAACTGAACA+AGG + chr4.2:73920820-73920839 None:intergenic 50.0%
!!! CGCCAAGGTTTTAACTGCTG+TGG - chr4.2:73920922-73920941 MS.gene043044:CDS 50.0%
AAGGCCAAGCCCACTTCCAA+CGG + chr4.2:73922656-73922675 None:intergenic 55.0%
AGCTCCAACCCAGTACGTGT+TGG + chr4.2:73921208-73921227 None:intergenic 55.0%
CGAATAGCAACTACTGCCCC+AGG + chr4.2:73921388-73921407 None:intergenic 55.0%
CTCTCTCTTCTCACGTCCCA+AGG - chr4.2:73923503-73923522 MS.gene043044:CDS 55.0%
GAGGGCTAGGGATCAACTCA+TGG - chr4.2:73921753-73921772 MS.gene043044:intron 55.0%
GATGCCAACACGTACTGGGT+TGG - chr4.2:73921201-73921220 MS.gene043044:intron 55.0%
GGTGAGTAGGTCAGCGACAA+AGG - chr4.2:73923988-73924007 MS.gene043044:CDS 55.0%
! AATCCCGTTGGAAGTGGGCT+TGG - chr4.2:73922649-73922668 MS.gene043044:CDS 55.0%
!! GGCCATCACTTGGTACTGGT+AGG + chr4.2:73922420-73922439 None:intergenic 55.0%
AGGCAGCATTTCCATCGCCG+TGG - chr4.2:73922348-73922367 MS.gene043044:CDS 60.0%
AGGCCAAGCCCACTTCCAAC+GGG + chr4.2:73922655-73922674 None:intergenic 60.0%
GCGAAAGGGCAACAGCTACC+TGG + chr4.2:73921708-73921727 None:intergenic 60.0%
GGGCAACAGCTACCTGGTGT+AGG + chr4.2:73921702-73921721 None:intergenic 60.0%
GGTCGAGGTAGTTGCTGACC+AGG - chr4.2:73921540-73921559 MS.gene043044:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 73920653 73924342 73920653 ID=MS.gene043044
chr4.2 mRNA 73920653 73924342 73920653 ID=MS.gene043044.t1;Parent=MS.gene043044
chr4.2 exon 73923434 73924342 73923434 ID=MS.gene043044.t1.exon1;Parent=MS.gene043044.t1
chr4.2 CDS 73923434 73924342 73923434 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2 exon 73922918 73923286 73922918 ID=MS.gene043044.t1.exon2;Parent=MS.gene043044.t1
chr4.2 CDS 73922918 73923286 73922918 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2 exon 73922536 73922802 73922536 ID=MS.gene043044.t1.exon3;Parent=MS.gene043044.t1
chr4.2 CDS 73922536 73922802 73922536 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2 exon 73922306 73922433 73922306 ID=MS.gene043044.t1.exon4;Parent=MS.gene043044.t1
chr4.2 CDS 73922306 73922433 73922306 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2 exon 73921953 73922150 73921953 ID=MS.gene043044.t1.exon5;Parent=MS.gene043044.t1
chr4.2 CDS 73921953 73922150 73921953 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
chr4.2 exon 73920653 73921007 73920653 ID=MS.gene043044.t1.exon6;Parent=MS.gene043044.t1
chr4.2 CDS 73920653 73921007 73920653 ID=cds.MS.gene043044.t1;Parent=MS.gene043044.t1
Gene Sequence

>MS.gene043044

ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATATATATCAGATTTCTTCATTGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGCGCCTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCAATTGTAATGACCACCGCCAAGGTTTTAACTGCTGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGTTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACGCATGAGATTAGAAGTACTCTTGATAGACATACAATACTGAAAACGACTCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCAACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGCGACAACAGAACCCTGTTGGATATACAGTTCCTATTAACCTTCCTGTGATCAATCATGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGACCAGGTTAGTAATTTTCCATTTTACTCGGTTTCCTTTCTAGTGTATTGTTTACACCTGGTTTGCTTTATTTACGTTTATTAGACTAAAACTGTTTTACATGAATATGTCTGTCTGTCATTCATTACTTCTTACTATTATCTCCTACACCAGGTAGCTGTTGCCCTTTCGCATGCTGCAATCTTAGAAGAGTCAATGAGGGCTAGGGATCAACTCATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCGATTCATGCTCGCAACGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATCTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTAAAAAGCAGCAATTTATTAGCTACACTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAGCGTTTAACCTTCATTCATTGTTTAGAGAGGTAAAATTTTCGCCTAAATCCCGAAAAATTCAACTTTATTAGTCTGACTAGTAGCTTATGATCTTTGAGTTTCTTCAGAAGCTTGATGTTGTTAGATTTGCTATTCTGATTGCAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCAGTGCATGCGATTGGTGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCCGTGGTTGTTGTAAAGCCTGAATCCTTCCGCGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATGGCCACTTTTATTTGCGAGTACAGGTATGTTTCGTCAAGCTTTACTAGTTTTCTTCTGTTTTGGTATATTGTATCGTCTGTTATCTGATTTCGAAGGTGGAATATATTTTGTTTTCCACAATATAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACGAAAAATCCCGTTGGAAGTGGGCTTGGCCTTGCAATTTGTAAAAGGTATTATATTCTTGTATAGTTACTGATATGATCATATTAATCTGTTTTCTATTCCTTGGTATATAGTATATTTACAAAATTAGAATTTGCGCTCTTCAATATTGGTATTTATGATTTTCTATTGATTGCGTTCGGTATCTTTAAATTGTGAGCAGGTTTGTGAATCTCATGGAAGGACATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGAACGTCCAAATGAACATAAACTACCTTACAAACCTAAAGCTCTAGTAAATAATGGATCTACAAACATTTCCGGTCTCAAGGTTCTTGTCATGGATGATAATGGGTCAGTAACAGCTTTATTTCCGTACCTTCAGTTGTGAAATTTGTTGCTATGTCTGGTGATTTTATAGAAAACTAAACTTAGGTTGATTTCTTACTTTAAGCCCCTACTTGGGCCACAATTATATTCTTGAAAGCATTATAATACTTATGTGCTGAATGCTCATATTGCTTACTACTAGTCCAAAGTAAGTCTATCTACATCAAGGTTTAGCTGCTAAACTTTTTAATTTACACTTCCTAAAAGCAATGTTTTAAAAACTGAATCTATCTGAGAGACATTTTGGTCATGGTTCACTGCATTAAACCACTCAAACCTGGACAAAACTGTGTTCTAAGTTCTAACCGTTCAAATAACTGAATACTGTTCACAGTTTAACAGGCTGAACTGTCTGGTTTGATTTGGTTTTTGAACATTGCCTAAAAGTAAACAAGTCTTATGGTATGTTTGGATACACGTTTCTCTCTCTCTTCTCACGTCCCAAGGCAATATTGCCGTGATTTTACAACTCCAAAATTCCTAGTTTCTAATCATTCATGCGTTTGAAAGTTGTTTCAACGTTGAAACAAACGGGCACTTAAGCATAGTCCTTGATGGGACATTATGGTTTTAGTTTGATTGATGTAGTTGACCCTACTTACTATGAAAAGACTTGGTGGTGGTTGTTGGTGTAACAAGCTTTAATACCATATCAAGCAATATTTCTAGTATAAATTTAAACTATTAGGTGAAGGTACCTGAATTTTTATTTGACAATTTGTATGTTCATTCACACTCACTTTATAGCCAGAAAAGAAAATATACATAATGCATGCAGTCTTCATTCAGTCTTCTACTCGCAATCTATGAAACTTGGAAGTCAGAAAAATTGTTTAGTGGCTGATGCATTTGCTGCGTTTACTCTTTCCCTTGCTTGTCTCATAACTAATGGTGAAACTTGTAATGCAGGGTGAGTAGGTCAGCGACAAAGGGGCTTCTTATGCATTTAGGATGCGACGTCACAACTGTAAGCTCAAGTGAAGAATGCATGCGTGTTGTTTCTCTGGAACACAAAGTGGTCTTTATGGATGTTTGTACAGGGTTAGATGGTTATGAATTAGCGGTTCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAACACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTGAATGGTGTAGTTTTAAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA
Protein sequence

>MS.gene043044.t1

MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISAFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDGHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQTLATKNPVGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPERPNEHKLPYKPKALVNNGSTNISGLKVLVMDDNGVSRSATKGLLMHLGCDVTTVSSSEECMRVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMKGVLTELLERRFVFETI