AlfalfaGEDB | MS.gene043334

M. sativa cultivar XinJiangDaYe / MS.gene043334

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043334.t1	XP_003597073.1	97	795	23	1	1	794	1	795	0.00E+00	1532.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043334.t1	O64477	61.0	789	288	10	8	784	5	785	7.4e-272	937.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043334.t1	G7IRL5	97.0	795	23	1	1	794	1	795	0.0e+00	1532.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene017377	MS.gene043334	PPI
MS.gene035805	MS.gene043334	PPI
MS.gene043334	MS.gene064498	PPI
MS.gene043334	MS.gene51385	PPI
MS.gene043334	MS.gene73119	PPI
MS.gene043334	MS.gene000303	PPI
MS.gene043334	MS.gene45282	PPI
MS.gene043334	MS.gene064242	PPI
MS.gene043334	MS.gene064542	PPI
MS.gene26134	MS.gene043334	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043334.t1	MTR_2g089360	96.864	829	25	1	1	828	1	829	0.0	1666
MS.gene043334.t1	MTR_0280s0040	74.119	823	206	5	3	822	4	822	0.0	1256
MS.gene043334.t1	MTR_2g089440	76.396	788	181	3	3	786	6	792	0.0	1217
MS.gene043334.t1	MTR_2g089440	73.975	561	142	2	229	786	1	560	0.0	835
MS.gene043334.t1	MTR_8g030500	40.024	827	442	17	28	821	14	819	0.0	560
MS.gene043334.t1	MTR_2g011180	37.260	832	443	25	29	804	30	838	1.05e-163	497
MS.gene043334.t1	MTR_4g091670	37.838	814	433	23	6	765	10	804	3.28e-162	493
MS.gene043334.t1	MTR_2g011160	36.155	827	446	20	11	778	11	814	4.77e-162	493
MS.gene043334.t1	MTR_3g019390	36.691	834	479	22	8	816	10	819	1.64e-161	490
MS.gene043334.t1	MTR_0090s0020	37.803	783	434	19	10	765	13	769	5.20e-161	489

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043334.t1	AT2G19130	60.549	801	294	11	8	795	5	796	0.0	976
MS.gene043334.t1	AT4G00340	42.428	766	391	17	28	767	20	761	0.0	577
MS.gene043334.t1	AT4G00340	41.885	764	377	17	28	767	20	740	0.0	568
MS.gene043334.t1	AT4G21380	37.277	786	429	17	28	765	31	800	4.30e-170	514
MS.gene043334.t1	AT4G11900	38.971	816	407	25	28	778	29	818	2.53e-168	509
MS.gene043334.t1	AT4G21390	36.787	859	454	28	8	807	11	839	4.00e-163	496
MS.gene043334.t1	AT4G27290	36.740	773	439	19	25	762	23	780	1.74e-161	491
MS.gene043334.t1	AT1G65790	36.986	803	428	24	28	778	29	805	1.90e-160	488
MS.gene043334.t1	AT4G27290	36.592	757	416	17	25	762	23	734	7.14e-159	483
MS.gene043334.t1	AT1G61610	34.251	835	471	23	8	788	8	818	1.76e-155	476

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Find 196 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGCAGACTTTGGCC+TGG	0.522582	2.2:-10429464	MS.gene043334:CDS
AAAGAGAAAAGACCTGTTGC+AGG	0.432307	2.2:+10430810	None:intergenic
AAAGCCGATGTTTATAGCTA+CGG	0.552145	2.2:-10429340	MS.gene043334:CDS
AAAGGACTCTTCTAAGGTCT+TGG	0.396495	2.2:-10429620	MS.gene043334:CDS
AAAGGAGGAATCTTTGAACT+GGG	0.578432	2.2:-10431233	MS.gene043334:CDS
AAATTGCTATTGGAATTGCA+AGG	0.569427	2.2:-10429579	MS.gene043334:CDS
AAATTGGGCGGAGGAGGATT+CGG	0.426863	2.2:-10429868	MS.gene043334:CDS
AACAAGAGGCTACCTTGCTC+CGG	0.518097	2.2:-10429392	MS.gene043334:CDS
AACAATAATGGGGTGATTAT+CGG	0.357520	2.2:-10430057	MS.gene043334:CDS
AACATTGGCTGATTCAAATG+TGG	0.691939	2.2:-10429830	MS.gene043334:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCCTCTAACTACTACAT+AGG	-	chr2.2:10429066-10429085	MS.gene043334:CDS	30.0%
AGATATGAAGATGTTCCTTT+AGG	+	chr2.2:10429486-10429505	None:intergenic	30.0%
ATATAATTTGACCTCATCTC+AGG	+	chr2.2:10429579-10429598	None:intergenic	30.0%
ATGAGATACCAAATTGCTAT+TGG	-	chr2.2:10430671-10430690	MS.gene043334:CDS	30.0%
ATGAGTCTTCAAAACAAGTT+TGG	-	chr2.2:10429208-10429227	MS.gene043334:CDS	30.0%
CAAGAATAAATGGAAATCCA+AGG	+	chr2.2:10430618-10430637	None:intergenic	30.0%
CCACTCAAACAATTACAATA+CGG	+	chr2.2:10429828-10429847	None:intergenic	30.0%
GAATAATTAAAGTCGCTTCT+TGG	-	chr2.2:10431113-10431132	MS.gene043334:CDS	30.0%
GATATGAAGATGTTCCTTTA+GGG	+	chr2.2:10429485-10429504	None:intergenic	30.0%
GTTTATGATTACATGCCTAA+TGG	-	chr2.2:10430590-10430609	MS.gene043334:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	10428898	10431384	10428898	ID=MS.gene043334
chr2.2	mRNA	10428898	10431384	10428898	ID=MS.gene043334.t1;Parent=MS.gene043334
chr2.2	exon	10428898	10431384	10428898	ID=MS.gene043334.t1.exon1;Parent=MS.gene043334.t1
chr2.2	CDS	10428898	10431384	10428898	ID=cds.MS.gene043334.t1;Parent=MS.gene043334.t1

Gene Sequence

>MS.gene043334

ATGATGAAACCATGGTTTTGTCTTTCTCTTCTAACGTTCTTCTTCTCTATACACTTCTATCCTTCCCTTGCAGCTCTAACAACCATCTCAGCAAAACAATCTCTCTCTGGTGACCAAACTCTTATTTCTAAAGGAGGAATCTTTGAACTGGGTTTCTTCAAACCAGGTAATTCCTCTAACTACTACATAGGCATATGGTACACAAAGGTCATTCAACAAACAATTGTTTGGGTAGCCAACAGAGACAATCCTGTCTCTGACAAAAACACTGCCACCTTAAAAATCTTAGCTGGTAATTTAGTTCTATTAAATGAGTCTTCAAAACAAGTTTGGTCTACAAACATGAATGTTCCTAAGTCAGATTCTGTTGTAGCCATGCTTCTAGATACTGGAAATCTTGTTTTGAAAAATAGGCCTAATGATGATGTATTAGATTCTCTATGGCAGAGTTTTGATCATCCAGCAGATACATGGCTTCCTGGTGGTAAAATTAAGCTAGACAATAAAACAAAGAAGCCTCAGTATCTTACTTCATGGAAGAATAGAAAAGATCCTGCAACAGGTCTTTTCTCTTTGGAACTAGACCCTAAAGGAACATCTTCATATCTTATTCTTTGGAATAAGTCTGAACAGTATTGGACAAGTGGATCTTGGAATGGACATATTTTTAGTTTGGTTCCTGAGATGAGGTCAAATTATATCTTCAATTTTTCGTTTGTGTCGAACGAGAATGAAAGCTACTTCACCTATTCCATGTATAACCCTTCGATTATATCGCGGTTTGTGATGGATATCTCAGGGCAGATTAAGCAACTTACATGGTTGGAAGGTATCAATCAGTGGAACTTGTTTTGGGCGCAGCCAAGACAACATTGTGAGGCTTATGCTTTATGTGGTTCGTTTGGGAGCTGCACTGAGAACTCAAAGCCGTATTGTAATTGTTTGAGTGGTTATGAGCCAAAGTCACAGTCTGATTGGGATTTGGAGGATCACTCAGGTGGGTGTATGAGAAAAACAAGGTTACAATGCGAGAGTTCTGGTCACTCTAATGGGGTAAAGGACAGGTTCCGCGCAATCCCCAACATGGCATTGCCTAAACATGCAAAACCCGTGGTATCAGGAAATGTAGAGGAATGTGAATCAATATGCTTGAACAATTGCTCTTGTTCTGCTTATTCATATGATAGTAATGAATGTTCAATTTGGATTGAAGACCTCCTAAATCTGCAACAGTTACCTTCAGAGGATAGTAGTGGAAAAACTTTGTATCTAAAACTTGCAGCATCAGAATTTAGTGATGCTAAAAACAATAATGGGGTGATTATCGGTGTTGTAGTAGGCGTGGTTGTCGGCATAGGGATTCTCTTGGCACTTCTTCTGTTTGTCATGCTTAGGCGAAGAAAGAAAACAGTTGGAACAGGTAAGCCTGTGGAGGGTTCGTTAGTGGCATTTGGGTATAGAGATATGCAAAATGCGACTAAGAATTTCTCTGAGAAATTGGGCGGAGGAGGATTCGGTTCTGTTTTCAAAGGAACATTGGCTGATTCAAATGTGGTGGCAGTGAAGAAGTTGGAAAGTGTTAGCCAAGGAGAGAAACAATTCAGAACAGAAGTGAGTACTATAGGGACAGTGCAACATGTTAATCTTGTTCGTCTCCGAGGATTCTGTTCAGAAGGTACTAAAAGGATGCTGGTTTATGATTACATGCCTAATGGTTCCTTGGATTTCCATTTATTCTTGAAAAAGGACTCTTCTAAGGTCTTGGACTGGAAAATGAGATACCAAATTGCTATTGGAATTGCAAGGGGATTAACATACCTCCACGAGAAGTGTCGTGACTGTATCATACACTGCGATGTAAAGCCAGAAAACATTCTCCTAGACACTGATTTTTGTCCAAAAGTTGCAGACTTTGGCCTGGCTAAGCTGGTCGGACGAGATTTCAGCAGGGTCCTAACAACCATGAGAGGAACAAGAGGCTACCTTGCTCCGGAGTGGATTTCTGGCGTAGCTATTACAGCCAAAGCCGATGTTTATAGCTACGGAATGATGCTTTTCGAGGTTGTATCGGGTAGGAGGAACTCCGATCCATCAGAAGATGGTCAAGTTACTTTCTTTCCTACCTTAGCTGCAAAAGTAGTTATTGAAGGTGGAAGTGTCATCACCCTTTTGGACCCTAGGTTGCAGGGAAATGCGGACATTGAAGAGGTTGCGCGAATAATTAAAGTCGCTTCTTGGTGTGTCCAAGACAACGAAAATCAAAGGCCAACAATGGGTCAGGTAGTTCAAATTCTTGAGGGTATTTTGGAAGTGAATTTGCCACCAATTCCAAGGTCTCTTCAAATGTTTGTTGATAACAATGAGAACGTGGTTTTCTACACTGATTCTAGCTCAACTCAAAGTTCACAGGTAAAGAGTAACATCTCAGCAACCTCTCAGGTCCAAAGCAATATCTCATCTAGCTCCAAGTCCTCGGCAGAAAATTAG

Protein sequence

>MS.gene043334.t1

MMKPWFCLSLLTFFFSIHFYPSLAALTTISAKQSLSGDQTLISKGGIFELGFFKPGNSSNYYIGIWYTKVIQQTIVWVANRDNPVSDKNTATLKILAGNLVLLNESSKQVWSTNMNVPKSDSVVAMLLDTGNLVLKNRPNDDVLDSLWQSFDHPADTWLPGGKIKLDNKTKKPQYLTSWKNRKDPATGLFSLELDPKGTSSYLILWNKSEQYWTSGSWNGHIFSLVPEMRSNYIFNFSFVSNENESYFTYSMYNPSIISRFVMDISGQIKQLTWLEGINQWNLFWAQPRQHCEAYALCGSFGSCTENSKPYCNCLSGYEPKSQSDWDLEDHSGGCMRKTRLQCESSGHSNGVKDRFRAIPNMALPKHAKPVVSGNVEECESICLNNCSCSAYSYDSNECSIWIEDLLNLQQLPSEDSSGKTLYLKLAASEFSDAKNNNGVIIGVVVGVVVGIGILLALLLFVMLRRRKKTVGTGKPVEGSLVAFGYRDMQNATKNFSEKLGGGGFGSVFKGTLADSNVVAVKKLESVSQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKRMLVYDYMPNGSLDFHLFLKKDSSKVLDWKMRYQIAIGIARGLTYLHEKCRDCIIHCDVKPENILLDTDFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEVVSGRRNSDPSEDGQVTFFPTLAAKVVIEGGSVITLLDPRLQGNADIEEVARIIKVASWCVQDNENQRPTMGQVVQILEGILEVNLPPIPRSLQMFVDNNENVVFYTDSSSTQSSQVKSNISATSQVQSNISSSSKSSAEN