AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064498


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064498.t1 MTR_5g077770 97.521 726 18 0 1 726 110 835 0.0 1463
MS.gene064498.t1 MTR_4g113530 34.488 664 408 10 2 649 75 727 1.13e-120 382
MS.gene064498.t1 MTR_2g006870 31.565 735 466 14 13 724 106 826 1.29e-109 352
MS.gene064498.t1 MTR_3g107720 33.638 657 419 8 2 649 93 741 1.35e-109 353
MS.gene064498.t1 MTR_1g011755 29.885 783 463 15 2 722 80 838 1.63e-103 336
MS.gene064498.t1 MTR_2g019530 29.380 742 453 19 2 722 80 771 8.02e-88 293
MS.gene064498.t1 MTR_3g108320 36.279 430 255 9 12 432 83 502 2.67e-81 269
MS.gene064498.t1 MTR_3g108320 36.279 430 255 9 12 432 83 502 3.38e-81 269
MS.gene064498.t1 MTR_3g108320 36.279 430 255 9 12 432 83 502 1.15e-80 270
MS.gene064498.t1 MTR_8g446430 34.180 433 268 7 2 426 69 492 4.67e-73 251
MS.gene064498.t1 MTR_8g046440 33.700 273 172 4 150 420 17 282 1.96e-46 168
MS.gene064498.t1 MTR_1g040590 24.055 291 195 7 104 390 13 281 1.19e-20 93.2
MS.gene064498.t1 MTR_4g113370 22.870 223 167 3 200 418 5 226 6.68e-17 81.3
MS.gene064498.t1 MTR_2g017825 42.857 105 59 1 532 636 28 131 8.30e-17 82.0
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 5.06e-12 67.8
MS.gene064498.t1 MTR_2g017825 42.857 105 59 1 532 636 28 131 1.18e-16 82.8
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 6.10e-12 68.2
MS.gene064498.t1 MTR_2g017825 42.857 105 59 1 532 636 28 131 1.64e-16 81.6
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 7.44e-12 67.8
MS.gene064498.t1 MTR_2g017825 42.857 105 59 1 532 636 28 131 1.72e-16 82.0
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 6.50e-12 68.2
MS.gene064498.t1 MTR_0279s0030 29.148 223 141 6 13 234 41 247 1.76e-16 82.4
MS.gene064498.t1 MTR_2g017825 44.211 95 53 0 542 636 37 131 3.51e-16 82.0
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 8.74e-12 68.6
MS.gene064498.t1 MTR_2g017825 44.211 95 53 0 542 636 37 131 3.58e-16 82.0
MS.gene064498.t1 MTR_2g017825 32.407 108 73 0 429 536 21 128 8.47e-12 68.6
MS.gene064498.t1 MTR_1g064240 26.816 179 128 2 173 348 342 520 1.29e-15 81.3
MS.gene064498.t1 MTR_5g022050 38.312 154 89 2 482 629 262 415 6.51e-15 78.2
MS.gene064498.t1 MTR_5g043640 35.443 158 97 2 476 628 51 208 1.55e-14 74.3
MS.gene064498.t1 MTR_5g043640 34.921 126 80 1 457 580 101 226 7.33e-13 69.7
MS.gene064498.t1 MTR_4g058730 22.564 195 148 2 158 349 315 509 2.79e-13 73.6
MS.gene064498.t1 MTR_6g027840 31.288 163 98 3 470 628 297 449 3.97e-13 73.2
MS.gene064498.t1 MTR_5g023090 32.227 211 137 2 425 629 239 449 8.54e-13 71.6
MS.gene064498.t1 MTR_2g094860 23.196 194 146 2 158 348 333 526 1.59e-12 71.2
MS.gene064498.t1 MTR_4g130820 21.628 393 242 12 24 350 162 554 1.88e-12 71.2
MS.gene064498.t1 MTR_4g092760 30.208 192 130 3 448 635 25 216 2.30e-12 70.5
MS.gene064498.t1 MTR_4g129470 30.131 229 112 9 454 637 24 249 2.81e-12 70.1
MS.gene064498.t1 MTR_7g034605 24.490 196 140 3 157 349 311 501 5.03e-12 69.7
MS.gene064498.t1 MTR_7g115280 29.384 211 144 4 420 628 64 271 8.81e-12 68.6
MS.gene064498.t1 MTR_5g091880 34.375 96 63 0 445 540 49 144 9.03e-12 68.6
MS.gene064498.t1 MTR_5g091880 44.737 76 42 0 554 629 61 136 4.63e-11 66.2
MS.gene064498.t1 MTR_4g116160 31.844 179 118 3 457 631 47 225 9.12e-12 68.6
MS.gene064498.t1 MTR_3g491870 40.449 89 53 0 454 542 245 333 1.24e-11 67.4
MS.gene064498.t1 MTR_1g112830 30.052 193 131 3 443 631 132 324 1.64e-11 68.2
MS.gene064498.t1 MTR_2g048680 37.815 119 72 1 498 614 87 205 4.08e-11 63.9
MS.gene064498.t1 MTR_4g116160 29.902 204 133 4 457 650 47 250 4.90e-11 66.6
MS.gene064498.t1 MTR_4g082325 55.000 60 27 0 570 629 46 105 5.17e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064498.t1 AT3G02850 73.967 726 187 2 1 724 102 827 0.0 1134
MS.gene064498.t1 AT5G37500 69.494 731 216 4 1 724 85 815 0.0 1071
MS.gene064498.t1 AT5G37500 67.463 753 216 5 1 724 31 783 0.0 1060
MS.gene064498.t1 AT5G37500 67.463 753 216 5 1 724 85 837 0.0 1059
MS.gene064498.t1 AT3G02850 76.131 641 152 1 1 640 102 742 0.0 1039
MS.gene064498.t1 AT5G37500 71.111 630 159 2 1 607 85 714 0.0 934
MS.gene064498.t1 AT3G02850 78.926 484 101 1 1 483 102 585 0.0 813
MS.gene064498.t1 AT2G26650 35.257 641 387 9 2 630 78 702 7.07e-118 374
MS.gene064498.t1 AT2G26650 35.073 613 370 9 30 630 1 597 2.38e-112 357
MS.gene064498.t1 AT2G25600 33.692 650 412 8 2 642 101 740 1.23e-109 353
MS.gene064498.t1 AT4G22200 31.436 738 453 14 2 722 96 797 3.73e-106 342
MS.gene064498.t1 AT4G32500 33.076 647 406 9 2 635 99 731 9.62e-106 343
MS.gene064498.t1 AT5G46240 36.636 434 258 7 1 426 79 503 4.67e-84 280
MS.gene064498.t1 AT4G18290 37.011 435 255 8 1 426 79 503 2.05e-81 273
MS.gene064498.t1 AT4G18290 37.011 435 255 8 1 426 90 514 2.08e-81 274
MS.gene064498.t1 AT4G32650 37.587 431 244 10 2 420 107 524 2.78e-77 260
MS.gene064498.t1 AT4G32650 37.587 431 244 10 2 420 107 524 3.73e-77 261
MS.gene064498.t1 AT4G32650 37.587 431 244 10 2 420 107 524 4.09e-77 261
MS.gene064498.t1 AT4G22200 32.929 495 307 10 2 483 96 578 1.23e-71 245
MS.gene064498.t1 AT4G18950 46.591 88 47 0 542 629 42 129 3.04e-14 76.3
MS.gene064498.t1 AT4G18950 46.591 88 47 0 542 629 42 129 3.20e-14 76.3
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 60 161 6.82e-14 74.3
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 123 224 1.46e-13 73.9
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 123 224 1.46e-13 73.9
MS.gene064498.t1 AT2G14255 29.612 206 141 3 434 635 12 217 1.65e-13 74.3
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 60 161 1.68e-13 73.9
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 123 224 2.86e-13 73.6
MS.gene064498.t1 AT3G58760 42.593 108 56 3 554 661 123 224 2.86e-13 73.6
MS.gene064498.t1 AT3G04710 32.778 180 113 4 453 628 320 495 5.69e-13 72.8
MS.gene064498.t1 AT2G03430 32.911 158 101 2 476 628 44 201 6.04e-13 69.7
MS.gene064498.t1 AT2G03430 32.653 147 94 2 457 598 94 240 2.54e-11 64.7
MS.gene064498.t1 AT2G03430 34.109 129 80 1 505 628 40 168 2.81e-11 64.7
MS.gene064498.t1 AT3G04710 32.778 180 113 4 453 628 96 271 8.11e-13 71.6
MS.gene064498.t1 AT5G20350 30.093 216 147 3 420 631 5 220 9.01e-13 72.0
MS.gene064498.t1 AT2G24610 25.000 180 132 2 172 348 348 527 2.36e-12 70.9
MS.gene064498.t1 AT2G24610 25.000 180 132 2 172 348 363 542 2.44e-12 70.9
MS.gene064498.t1 AT2G28260 23.590 195 146 2 157 348 283 477 4.44e-12 70.1
MS.gene064498.t1 AT2G28260 23.590 195 146 2 157 348 323 517 4.57e-12 70.1
MS.gene064498.t1 AT5G66055 40.000 135 77 4 482 613 263 396 5.73e-12 68.9
MS.gene064498.t1 AT5G57940 27.072 181 129 3 173 350 366 546 5.99e-12 69.7
MS.gene064498.t1 AT5G57940 27.072 181 129 3 173 350 366 546 5.99e-12 69.7
MS.gene064498.t1 AT5G57940 27.072 181 129 3 173 350 359 539 6.60e-12 69.3
MS.gene064498.t1 AT2G31820 28.571 175 119 4 475 643 254 428 7.10e-12 69.3
MS.gene064498.t1 AT3G04710 32.778 180 112 5 453 628 96 270 1.30e-11 67.8
MS.gene064498.t1 AT2G31800 31.148 122 81 2 551 672 83 201 8.72e-11 65.5
MS.gene064498.t1 AT1G15990 24.862 181 133 3 173 350 370 550 9.87e-11 65.9

Find 134 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTCTTCTTTGTTCTTT+TGG 0.087746 5.3:+62969714 None:intergenic
ACCTTTGTCATTGATCTTCT+TGG 0.183191 5.3:-62975872 MS.gene064498:CDS
CATGAGGAATTCTTTCTTCC+TGG 0.186483 5.3:-62972244 MS.gene064498:CDS
TCCCATTTCTATTCGATCTA+AGG 0.234403 5.3:-62973584 MS.gene064498:intron
GGGAACACTGTGCACTTCTT+TGG 0.240600 5.3:+62969753 None:intergenic
TATTGACGTTAGCATGATTA+AGG 0.255569 5.3:-62969583 MS.gene064498:CDS
GTGTAGCCCTCTTGGGATTC+AGG 0.256246 5.3:+62974826 None:intergenic
AGTTCAGAGAAATTGATATT+TGG 0.258991 5.3:-62974762 MS.gene064498:CDS
CAGATTCTAGCTTTCCAATA+TGG 0.267039 5.3:+62971342 None:intergenic
GATCAAAGACTGAAAAGTTT+AGG 0.268961 5.3:-62973738 MS.gene064498:CDS
TATCAGTACCTGTAATTTCT+TGG 0.280875 5.3:+62969894 None:intergenic
CTTTCATCTTTCAGGTTACT+AGG 0.281282 5.3:-62972270 MS.gene064498:intron
GAGATTCGGATTATCTTAAA+AGG 0.294278 5.3:-62970755 MS.gene064498:CDS
GTTTCATTTGACATGGTTCT+TGG 0.295468 5.3:-62973802 MS.gene064498:CDS
AGGAAGTGAGGTACCTATTA+TGG 0.297786 5.3:-62975011 MS.gene064498:CDS
TTCTTCACCCCAATGGAGTT+TGG 0.299257 5.3:-62976349 None:intergenic
GGATATCCGTGAACAAATAA+AGG 0.308926 5.3:-62973665 MS.gene064498:CDS
TACCTTAGATCGAATAGAAA+TGG 0.310873 5.3:+62973582 None:intergenic
GAAGAAATGGAATAGTATTA+TGG 0.316456 5.3:-62969701 MS.gene064498:CDS
CTAGAGCGCAACAGCTCATT+TGG 0.327681 5.3:-62971743 MS.gene064498:CDS
ATCTTCTTGGATGTATGCCC+TGG 0.329468 5.3:-62975859 MS.gene064498:CDS
TATATAATCTGATCCATAAT+AGG 0.329517 5.3:+62974998 None:intergenic
CACTGACGCTGCAGTCCTTC+AGG 0.339626 5.3:-62973611 MS.gene064498:CDS
ATCAGTACCTGTAATTTCTT+GGG 0.340308 5.3:+62969895 None:intergenic
CTATCCATGTGTAGCCCTCT+TGG 0.343434 5.3:+62974818 None:intergenic
CGTAATTTCACAGATAACTT+TGG 0.350102 5.3:-62970903 MS.gene064498:intron
TCAATTACAGTACCTGTCTT+TGG 0.359155 5.3:+62970605 None:intergenic
GCCAGAGAATCTCTTTATAC+TGG 0.359937 5.3:-62976311 MS.gene064498:CDS
ATGGATAGGAAGTTTGAAAC+TGG 0.364533 5.3:-62974803 MS.gene064498:CDS
TTTAGTCAATGAAATGCATT+AGG 0.371280 5.3:-62969544 None:intergenic
CCAAAAGAACAAAGAAGAAA+TGG 0.374118 5.3:-62969714 MS.gene064498:CDS
AGAATCTGATCTTGCTTTGA+AGG 0.374486 5.3:-62971327 MS.gene064498:CDS
AAAATTTACCGCAGAGCAAT+AGG 0.375503 5.3:+62976190 None:intergenic
TATTATGGATCAGATTATAT+AGG 0.375807 5.3:-62974996 MS.gene064498:CDS
ATCAAAGACTGAAAAGTTTA+GGG 0.382228 5.3:-62973737 MS.gene064498:CDS
TATCCATGTGTAGCCCTCTT+GGG 0.383791 5.3:+62974819 None:intergenic
CCTGTAATTTCTTGGGGAAA+AGG 0.384238 5.3:+62969902 None:intergenic
GTAATTTCACAGATAACTTT+GGG 0.384971 5.3:-62970902 MS.gene064498:intron
ATCTGAAGGATTAATCTTCA+TGG 0.398968 5.3:-62970664 MS.gene064498:CDS
ATTATGGATCAGATTATATA+GGG 0.408607 5.3:-62974995 MS.gene064498:CDS
CAGGGAAAAGAGTCTATTAG+AGG 0.414386 5.3:-62971392 MS.gene064498:CDS
ATGAGGAATTCTTTCTTCCT+GGG 0.415335 5.3:-62972243 MS.gene064498:CDS
CTGTAATTTCTTGGGGAAAA+GGG 0.418226 5.3:+62969903 None:intergenic
CTCTTTATACTGGATATTGT+AGG 0.426388 5.3:-62976301 MS.gene064498:CDS
TTGGATCCCACGGATGGAAC+GGG 0.441874 5.3:+62969733 None:intergenic
AGCGGTTGCAAGAGGAGATT+CGG 0.443420 5.3:-62970769 MS.gene064498:CDS
ATATAATGATTACCTCTAGA+AGG 0.448474 5.3:+62971579 None:intergenic
GTCTATTAGAGGTAAGCAAT+TGG 0.450472 5.3:-62971381 MS.gene064498:CDS
TCAGACATCACATTCCATAT+TGG 0.453192 5.3:-62971356 MS.gene064498:CDS
CATCATAAAAGTATATATCT+AGG 0.453405 5.3:+62971621 None:intergenic
TCCAGTATAAAGAGATTCTC+TGG 0.454674 5.3:+62976310 None:intergenic
CTTTGATCCCTTGACTATCA+AGG 0.455450 5.3:+62973753 None:intergenic
CTTCTTTACTTGTTAGAGAA+GGG 0.459052 5.3:-62970833 MS.gene064498:CDS
TATATCTAGGATATTTGAAA+AGG 0.461969 5.3:+62971634 None:intergenic
GTTCTTGGTGCTTACTTGAT+CGG 0.463629 5.3:-62973787 MS.gene064498:CDS
GATATCCGTGAACAAATAAA+GGG 0.468529 5.3:-62973664 MS.gene064498:CDS
GAATAGAAATAAACTTCATA+AGG 0.468958 5.3:-62973686 MS.gene064498:CDS
TTCAGATGCAGCAACATGTA+GGG 0.482589 5.3:+62970680 None:intergenic
TTATGATGGAAGATCACCTT+TGG 0.485561 5.3:-62971225 MS.gene064498:intron
TGCTGCATGCAGAGGATATG+AGG 0.486498 5.3:-62971048 MS.gene064498:CDS
AACCTTGTAGATGAGGTCCC+AGG 0.492365 5.3:+62975841 None:intergenic
ACACTTCTTCTTATTCATGA+AGG 0.493130 5.3:-62971020 MS.gene064498:CDS
CGTGGCCCTTTATTTGTTCA+CGG 0.497113 5.3:+62973659 None:intergenic
ACCTTAGATCGAATAGAAAT+GGG 0.498449 5.3:+62973583 None:intergenic
AAAACAGCAGCAGAACAGAT+AGG 0.501512 5.3:-62969651 MS.gene064498:CDS
GAAGTAGGCATAGCTGATGA+TGG 0.503447 5.3:-62971788 MS.gene064498:CDS
TATACATGCAGTAAATTTGA+GGG 0.506151 5.3:-62973848 MS.gene064498:CDS
CTACTTGAAGCAGTTAAGAA+TGG 0.507806 5.3:-62970870 MS.gene064498:CDS
CTAACAAGTTTGATTCGAGC+TGG 0.507916 5.3:-62971269 MS.gene064498:CDS
GCTTCTTTACTTGTTAGAGA+AGG 0.513509 5.3:-62970834 MS.gene064498:CDS
TTCTTTACTTGTTAGAGAAG+GGG 0.515946 5.3:-62970832 MS.gene064498:CDS
GTGTCAATTACATTATTGCT+CGG 0.517673 5.3:-62974927 MS.gene064498:CDS
CAGTGTTCCCGTTCCATCCG+TGG 0.517873 5.3:-62969740 MS.gene064498:CDS
ATATACATGCAGTAAATTTG+AGG 0.522845 5.3:-62973849 MS.gene064498:CDS
GCAAAGTTGTTATTAGAAGC+CGG 0.525156 5.3:-62970642 MS.gene064498:CDS
GTATAAAGAGATTCTCTGGC+AGG 0.526369 5.3:+62976314 None:intergenic
CTTCAGATGCAGCAACATGT+AGG 0.529295 5.3:+62970679 None:intergenic
TTCTTAACTGCTTCAAGTAG+CGG 0.531512 5.3:+62970873 None:intergenic
CAAGAGGGCTACACATGGAT+AGG 0.535896 5.3:-62974817 MS.gene064498:CDS
TCTTCTTGGATGTATGCCCT+GGG 0.537095 5.3:-62975858 MS.gene064498:CDS
ACCATCATCTATCCTAAAAG+AGG 0.538159 5.3:+62970809 None:intergenic
TTCGTGTTTGTGAACTGTGT+AGG 0.541275 5.3:-62971679 MS.gene064498:CDS
CTACATGTTGCTGCATCTGA+AGG 0.541279 5.3:-62970678 MS.gene064498:CDS
GTTTCAATGCAGGAGGAAGT+AGG 0.544137 5.3:-62971803 MS.gene064498:intron
TTTGGATCCCACGGATGGAA+CGG 0.544164 5.3:+62969732 None:intergenic
TCGTGTTTGTGAACTGTGTA+GGG 0.545827 5.3:-62971678 MS.gene064498:CDS
AGGATTGTTTATCAATCCGC+AGG 0.546342 5.3:+62971654 None:intergenic
TGTTGCATTATAACTTCCCC+AGG 0.548638 5.3:+62972226 None:intergenic
AGACTGAAAAGTTTAGGGAC+AGG 0.553258 5.3:-62973732 MS.gene064498:CDS
TGATAAAATACAAGAGTCAC+CGG 0.555115 5.3:+62969623 None:intergenic
TCACAAACACGAACAGTATG+TGG 0.557670 5.3:+62971689 None:intergenic
CTCATCCGAGCTTCATCAAG+CGG 0.561492 5.3:+62969986 None:intergenic
CTTGATGAAGCTCGGATGAG+TGG 0.563533 5.3:-62969983 MS.gene064498:CDS
GATTTATGTTTCATTTGACA+TGG 0.567202 5.3:-62973809 MS.gene064498:CDS
ACCTTGTAGATGAGGTCCCA+GGG 0.570005 5.3:+62975842 None:intergenic
TAGAAGTGCAACAGTTTCCT+CGG 0.570596 5.3:+62971763 None:intergenic
GGTGTAGACATCAACGTCAA+AGG 0.575460 5.3:-62970999 MS.gene064498:intron
AGTGTTCCCGTTCCATCCGT+GGG 0.575764 5.3:-62969739 MS.gene064498:CDS
AGCTAAATAGTAGAATATGC+AGG 0.576332 5.3:+62974858 None:intergenic
ATACTCCGCTTGATGAAGCT+CGG 0.576832 5.3:-62969991 MS.gene064498:CDS
ACAGGCTTGTGGACGGAGAG+AGG 0.578778 5.3:-62975031 MS.gene064498:intron
GCCCTGGGACCTCATCTACA+AGG 0.578995 5.3:-62975843 MS.gene064498:intron
ACACGAACAGTATGTGGCTG+AGG 0.585190 5.3:+62971695 None:intergenic
TTATGCTCAGCGGTTGCAAG+AGG 0.591981 5.3:-62970777 MS.gene064498:CDS
CATGACAGCCTTGATAGTCA+AGG 0.595353 5.3:-62973761 MS.gene064498:CDS
GAAGTAGAACCTTGTAGATG+AGG 0.595885 5.3:+62975834 None:intergenic
AAGTAGGCATAGCTGATGAT+GGG 0.598659 5.3:-62971787 MS.gene064498:CDS
TGAGGAATTCTTTCTTCCTG+GGG 0.600005 5.3:-62972242 MS.gene064498:CDS
ATTAGCTCTTGAATGGTGTG+TGG 0.609110 5.3:+62969675 None:intergenic
CAGGAAGAAAGAATTCCTCA+TGG 0.613827 5.3:+62972245 None:intergenic
ACGATTGCAAACCATGCGAT+AGG 0.616336 5.3:+62976216 None:intergenic
ATGACAGCCTTGATAGTCAA+GGG 0.617477 5.3:-62973760 MS.gene064498:CDS
CAGATGCAGCAACATGTAGG+GGG 0.623515 5.3:+62970682 None:intergenic
AATCCCAAGAGGGCTACACA+TGG 0.627575 5.3:-62974822 MS.gene064498:CDS
TTTATGAACAGGCTTGTGGA+CGG 0.628660 5.3:-62975038 MS.gene064498:intron
TCAGTACCTGTAATTTCTTG+GGG 0.633503 5.3:+62969896 None:intergenic
TTTCAAACTGCAAACGCACG+TGG 0.634475 5.3:+62973641 None:intergenic
GTGAACTGTGTAGGGTCCTG+CGG 0.635006 5.3:-62971670 MS.gene064498:CDS
TAGAAATGGGAATATCCTGA+AGG 0.635657 5.3:+62973596 None:intergenic
TAGCATCTTGCTGCATGCAG+AGG 0.635817 5.3:-62971056 MS.gene064498:CDS
ATTGTTACTATGGCTACTGT+CGG 0.635977 5.3:-62974709 MS.gene064498:intron
TGGATAGGAAGTTTGAAACT+GGG 0.641324 5.3:-62974802 MS.gene064498:CDS
TCAGATGCAGCAACATGTAG+GGG 0.646383 5.3:+62970681 None:intergenic
AGTATTAGACAACCTTCTAG+AGG 0.656465 5.3:-62971591 MS.gene064498:intron
TCCAAGAAGATCAATGACAA+AGG 0.659708 5.3:+62975871 None:intergenic
AGACAGTCAGACCTATCGCA+TGG 0.660632 5.3:-62976227 MS.gene064498:CDS
CATAGCTGATGATGGGTCCG+AGG 0.664496 5.3:-62971780 MS.gene064498:CDS
GTGGACGGAGAGAGGAAGTG+AGG 0.671596 5.3:-62975023 MS.gene064498:CDS
ACACTACCTGAATCCCAAGA+GGG 0.677718 5.3:-62974832 MS.gene064498:CDS
TCAGGTTACTAGGCTCCATG+AGG 0.679390 5.3:-62972260 MS.gene064498:intron
TACACTACCTGAATCCCAAG+AGG 0.684427 5.3:-62974833 MS.gene064498:CDS
AGATGCAGCAACATGTAGGG+GGG 0.701313 5.3:+62970683 None:intergenic
ATCGTACTCCTATTGCTCTG+CGG 0.702881 5.3:-62976198 MS.gene064498:intron
GGGGAAGTTATAATGCAACA+AGG 0.706358 5.3:-62972223 MS.gene064498:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAGATAAAAAGA+AGG + chr5.3:62976025-62976044 None:intergenic 15.0%
!! AAGTTAAAGAAAAAGTAAAA+TGG + chr5.3:62970275-62970294 None:intergenic 15.0%
!! AGTTAAAGAAAAAGTAAAAT+GGG + chr5.3:62970274-62970293 None:intergenic 15.0%
!! ATATATATAGAATATGCTAT+AGG - chr5.3:62975792-62975811 MS.gene064498:intron 15.0%
!! ATTTAAATATGTTTGTTTGT+AGG - chr5.3:62973145-62973164 MS.gene064498:CDS 15.0%
!! TTTAACATCTATATAAAGTT+AGG - chr5.3:62970337-62970356 MS.gene064498:intron 15.0%
!!! AAAAAAAAAACGATAAGTTT+TGG + chr5.3:62975842-62975861 None:intergenic 15.0%
!!! ACACAATATAATTTTTATGA+TGG - chr5.3:62969832-62969851 MS.gene064498:intron 15.0%
!!! ATTAGTATTATCTATACTTT+TGG - chr5.3:62972813-62972832 MS.gene064498:intron 15.0%
!!! ATTGTTTTTCATTTGATTTA+TGG - chr5.3:62969952-62969971 MS.gene064498:CDS 15.0%
!!! TAGATATATACTTTTATGAT+GGG - chr5.3:62974263-62974282 MS.gene064498:intron 15.0%
!! ATATTTGATATATGCTGAAA+TGG - chr5.3:62969909-62969928 MS.gene064498:CDS 20.0%
!! ATTATGGATCAGATTATATA+GGG - chr5.3:62970887-62970906 MS.gene064498:CDS 20.0%
!! ATTTCATATTTCACCTATAA+CGG + chr5.3:62975717-62975736 None:intergenic 20.0%
!! GAATAGAAATAAACTTCATA+AGG - chr5.3:62972196-62972215 MS.gene064498:CDS 20.0%
!! GTTAAAGAAAAAGTAAAATG+GGG + chr5.3:62970273-62970292 None:intergenic 20.0%
!! TAAACTATATTTGTGACTAT+AGG + chr5.3:62970462-62970481 None:intergenic 20.0%
!! TAAATCATCATAATACAACT+TGG + chr5.3:62971554-62971573 None:intergenic 20.0%
!! TAGACATATCTTTAATGTAA+TGG - chr5.3:62971385-62971404 MS.gene064498:CDS 20.0%
!! TATATAATCTGATCCATAAT+AGG + chr5.3:62970887-62970906 None:intergenic 20.0%
!! TATCTGAAAAAAATGATAGA+TGG + chr5.3:62976101-62976120 None:intergenic 20.0%
!! TATTATGGATCAGATTATAT+AGG - chr5.3:62970886-62970905 MS.gene064498:CDS 20.0%
!! TATTTGATATATGCTGAAAT+GGG - chr5.3:62969910-62969929 MS.gene064498:CDS 20.0%
!! TGATAAGATAGTATACAATT+TGG + chr5.3:62971949-62971968 None:intergenic 20.0%
!! TTATCAAGAAATACAACATA+AGG + chr5.3:62969720-62969739 None:intergenic 20.0%
!!! ATAATGATTTTCATTTTGTC+TGG - chr5.3:62971240-62971259 MS.gene064498:CDS 20.0%
!!! ATCTAAAACCTTAAAACTAA+GGG - chr5.3:62972875-62972894 MS.gene064498:intron 20.0%
!!! CATCATAAAAGTATATATCT+AGG + chr5.3:62974264-62974283 None:intergenic 20.0%
!!! CTAATATCTCATATTTTACA+GGG - chr5.3:62974472-62974491 MS.gene064498:intron 20.0%
!!! CTAGATATATACTTTTATGA+TGG - chr5.3:62974262-62974281 MS.gene064498:intron 20.0%
!!! TATATCTAGGATATTTGAAA+AGG + chr5.3:62974251-62974270 None:intergenic 20.0%
!!! TATTTTGTTATTTAGACTCA+AGG - chr5.3:62972936-62972955 MS.gene064498:intron 20.0%
!!! TCATTTTTGAAACAATGTTT+AGG + chr5.3:62970149-62970168 None:intergenic 20.0%
!!! TTCAGGTGAAAATTTAAAAT+TGG - chr5.3:62975368-62975387 MS.gene064498:intron 20.0%
! AAACAACAAAGGTTCTTATT+AGG + chr5.3:62974800-62974819 None:intergenic 25.0%
! AAACAGATTTAGTGAACATT+TGG - chr5.3:62971511-62971530 MS.gene064498:intron 25.0%
! AAAGAAAATTCAGCATTATC+CGG + chr5.3:62973873-62973892 None:intergenic 25.0%
! AATATCAGAAACCTGAAATA+TGG + chr5.3:62973782-62973801 None:intergenic 25.0%
! ACTAGCATAGATAAAATTAG+AGG - chr5.3:62971329-62971348 MS.gene064498:CDS 25.0%
! AGGATCATAGTAAATTATAG+AGG + chr5.3:62970129-62970148 None:intergenic 25.0%
! AGTTCAGAGAAATTGATATT+TGG - chr5.3:62971120-62971139 MS.gene064498:intron 25.0%
! ATATAATGATTACCTCTAGA+AGG + chr5.3:62974306-62974325 None:intergenic 25.0%
! ATATACATGCAGTAAATTTG+AGG - chr5.3:62972033-62972052 MS.gene064498:intron 25.0%
! ATATCAGAAACCTGAAATAT+GGG + chr5.3:62973781-62973800 None:intergenic 25.0%
! ATATGTCTAAGTTCTACAAT+TGG + chr5.3:62971374-62971393 None:intergenic 25.0%
! ATCAAAGACTGAAAAGTTTA+GGG - chr5.3:62972145-62972164 MS.gene064498:intron 25.0%
! ATGCATAATTATATACTGAG+TGG + chr5.3:62973301-62973320 None:intergenic 25.0%
! ATGGTAGATACTCTATTAAA+GGG + chr5.3:62974347-62974366 None:intergenic 25.0%
! ATGTCAACTATTAGAATTAG+AGG - chr5.3:62970238-62970257 MS.gene064498:intron 25.0%
! ATTACTAATGTTTCCAAGAA+GGG - chr5.3:62975326-62975345 MS.gene064498:intron 25.0%
! CCTGTAAAATATGAGATATT+AGG + chr5.3:62974474-62974493 None:intergenic 25.0%
! CTAGCATAGATAAAATTAGA+GGG - chr5.3:62971330-62971349 MS.gene064498:CDS 25.0%
! GAAAATTCATCTTTGTTCTT+TGG - chr5.3:62972559-62972578 MS.gene064498:intron 25.0%
! GAAGAAATGGAATAGTATTA+TGG - chr5.3:62976181-62976200 MS.gene064498:intron 25.0%
! GATTTATGTTTCATTTGACA+TGG - chr5.3:62972073-62972092 MS.gene064498:intron 25.0%
! GCTTTCAGTATTTAAATAGA+TGG - chr5.3:62971304-62971323 MS.gene064498:CDS 25.0%
! GTAATTTCACAGATAACTTT+GGG - chr5.3:62974980-62974999 MS.gene064498:CDS 25.0%
! GTAGAAAACAATAAATCCAA+TGG + chr5.3:62973034-62973053 None:intergenic 25.0%
! GTTATAGGTGAAATATGAAA+TGG - chr5.3:62975716-62975735 MS.gene064498:intron 25.0%
! GTTCACTAAATCTGTTTAAA+TGG + chr5.3:62971508-62971527 None:intergenic 25.0%
! TAAAAATCTGATAAAGCTAC+TGG - chr5.3:62975925-62975944 MS.gene064498:intron 25.0%
! TAGCATAGATAAAATTAGAG+GGG - chr5.3:62971331-62971350 MS.gene064498:CDS 25.0%
! TATACATGCAGTAAATTTGA+GGG - chr5.3:62972034-62972053 MS.gene064498:intron 25.0%
! TATAGTCTGAAGAAAATTGT+TGG - chr5.3:62971477-62971496 MS.gene064498:intron 25.0%
! TATCAGCTATACAACAATAA+CGG + chr5.3:62969892-62969911 None:intergenic 25.0%
! TGGATTGATAAAAAAGAACT+TGG - chr5.3:62973468-62973487 MS.gene064498:intron 25.0%
! TTATCCTTGAAAGAATTCAA+GGG - chr5.3:62973079-62973098 MS.gene064498:intron 25.0%
! TTCTTCATAATATCTTCCAT+AGG - chr5.3:62973953-62973972 MS.gene064498:intron 25.0%
! TTGAAAGAAACTCTGAATAA+AGG - chr5.3:62971448-62971467 MS.gene064498:intron 25.0%
! TTGTAGAAAGTGAAACAAAT+AGG + chr5.3:62972393-62972412 None:intergenic 25.0%
! TTTATCCTTGAAAGAATTCA+AGG - chr5.3:62973078-62973097 MS.gene064498:intron 25.0%
! TTTATGTTCTTTCATCTTTC+AGG - chr5.3:62973604-62973623 MS.gene064498:CDS 25.0%
!! AAAAAAGAACTTGGTAGTAT+GGG - chr5.3:62973477-62973496 MS.gene064498:intron 25.0%
!! AAATTCTGCCTTTTAATAAC+AGG + chr5.3:62970626-62970645 None:intergenic 25.0%
!! AGTATTATCTATACTTTTGG+TGG - chr5.3:62972816-62972835 MS.gene064498:intron 25.0%
!! ATGTACTAAGTTACTCATTT+TGG - chr5.3:62974412-62974431 MS.gene064498:intron 25.0%
!! CCTAATATCTCATATTTTAC+AGG - chr5.3:62974471-62974490 MS.gene064498:intron 25.0%
!! CTTAAAAGGCTTTTATCTTA+TGG - chr5.3:62975141-62975160 MS.gene064498:intron 25.0%
!! GAAATGTATTCTGGAAATTT+AGG + chr5.3:62970085-62970104 None:intergenic 25.0%
!! GAGGATCAAACTTAAATTTT+AGG - chr5.3:62974935-62974954 MS.gene064498:CDS 25.0%
!! GATCTAAAACCTTAAAACTA+AGG - chr5.3:62972874-62972893 MS.gene064498:intron 25.0%
!! TAAAAAAGAACTTGGTAGTA+TGG - chr5.3:62973476-62973495 MS.gene064498:intron 25.0%
!! TCTAAAACCTTAAAACTAAG+GGG - chr5.3:62972876-62972895 MS.gene064498:intron 25.0%
!! TGTCATTTCATACTGATATA+TGG + chr5.3:62972794-62972813 None:intergenic 25.0%
!! TTCTCATAAACACTTTTACA+AGG + chr5.3:62973907-62973926 None:intergenic 25.0%
!! TTTATAACAGCATTTGTTAG+TGG + chr5.3:62974770-62974789 None:intergenic 25.0%
!!! AAAAACGATAAGTTTTGGAA+TGG + chr5.3:62975837-62975856 None:intergenic 25.0%
!!! ACTTTTTCTTTAACTTTCCA+TGG - chr5.3:62970279-62970298 MS.gene064498:intron 25.0%
!!! GTATTTTGCTATTGTTACTA+TGG - chr5.3:62971163-62971182 MS.gene064498:intron 25.0%
AAATAGTTGGTCAATTGAAC+TGG + chr5.3:62970375-62970394 None:intergenic 30.0%
AACAATAAATCCAATGGACA+AGG + chr5.3:62973028-62973047 None:intergenic 30.0%
AACATATAGAGATGAAACGT+AGG + chr5.3:62972511-62972530 None:intergenic 30.0%
AAGGTAATAAGAGAAAGAAG+AGG - chr5.3:62972317-62972336 MS.gene064498:intron 30.0%
ACAACCATAAATGATGCTAA+AGG + chr5.3:62972344-62972363 None:intergenic 30.0%
ACAATAAATCCAATGGACAA+GGG + chr5.3:62973027-62973046 None:intergenic 30.0%
ACACTTCTTCTTATTCATGA+AGG - chr5.3:62974862-62974881 MS.gene064498:CDS 30.0%
ACAGACTATCAACAAATAGT+TGG + chr5.3:62970388-62970407 None:intergenic 30.0%
ACATATAGAGATGAAACGTA+GGG + chr5.3:62972510-62972529 None:intergenic 30.0%
ACCTGAAAACAAGTATGAAA+AGG + chr5.3:62975355-62975374 None:intergenic 30.0%
ACCTTAGATCGAATAGAAAT+GGG + chr5.3:62972302-62972321 None:intergenic 30.0%
AGCTAAATAGTAGAATATGC+AGG + chr5.3:62971027-62971046 None:intergenic 30.0%
ATACCTACAGAAAAGAAACA+AGG + chr5.3:62969981-62970000 None:intergenic 30.0%
ATCAGTACCTGTAATTTCTT+GGG + chr5.3:62975990-62976009 None:intergenic 30.0%
ATCTGAAGGATTAATCTTCA+TGG - chr5.3:62975218-62975237 MS.gene064498:intron 30.0%
ATTTCATACTGATATATGGC+AGG + chr5.3:62972790-62972809 None:intergenic 30.0%
CATGGTAGATACTCTATTAA+AGG + chr5.3:62974348-62974367 None:intergenic 30.0%
CATTACTAATGTTTCCAAGA+AGG - chr5.3:62975325-62975344 MS.gene064498:intron 30.0%
CCAAAAGAACAAAGAAGAAA+TGG - chr5.3:62976168-62976187 MS.gene064498:intron 30.0%
CCTATTAAACCGACATTATA+AGG + chr5.3:62969803-62969822 None:intergenic 30.0%
CGTAATTTCACAGATAACTT+TGG - chr5.3:62974979-62974998 MS.gene064498:CDS 30.0%
CTCTTTATACTGGATATTGT+AGG - chr5.3:62969581-62969600 MS.gene064498:CDS 30.0%
CTGTCACAATACTTTATGTT+GGG - chr5.3:62970404-62970423 MS.gene064498:intron 30.0%
GAAATTGAAAAATAGCGAAG+TGG + chr5.3:62973750-62973769 None:intergenic 30.0%
GAACAAATATCAACAAGCAT+TGG + chr5.3:62972438-62972457 None:intergenic 30.0%
GAATCGATGCAAATAATACA+TGG + chr5.3:62971906-62971925 None:intergenic 30.0%
GACAGTAATTTCATAACAGA+TGG + chr5.3:62971746-62971765 None:intergenic 30.0%
GAGATTCGGATTATCTTAAA+AGG - chr5.3:62975127-62975146 MS.gene064498:intron 30.0%
GATATCCGTGAACAAATAAA+GGG - chr5.3:62972218-62972237 MS.gene064498:CDS 30.0%
GATCAAAGACTGAAAAGTTT+AGG - chr5.3:62972144-62972163 MS.gene064498:intron 30.0%
GCACAAGTTAAGATTAATGT+TGG - chr5.3:62970684-62970703 MS.gene064498:CDS 30.0%
GTATACTATCTTATCACTCT+TGG - chr5.3:62971953-62971972 MS.gene064498:intron 30.0%
GTGTCAATTACATTATTGCT+CGG - chr5.3:62970955-62970974 MS.gene064498:intron 30.0%
GTTGTTGTCGTATGATTTAT+AGG + chr5.3:62975496-62975515 None:intergenic 30.0%
TACCTTAGATCGAATAGAAA+TGG + chr5.3:62972303-62972322 None:intergenic 30.0%
TAGAAACTCTCGTTAAACAA+AGG + chr5.3:62973537-62973556 None:intergenic 30.0%
TATCAGTACCTGTAATTTCT+TGG + chr5.3:62975991-62976010 None:intergenic 30.0%
TATCTCTCACCTTATAATGT+CGG - chr5.3:62969791-62969810 MS.gene064498:intron 30.0%
TATTGACGTTAGCATGATTA+AGG - chr5.3:62976299-62976318 MS.gene064498:CDS 30.0%
TCTGTCACAATACTTTATGT+TGG - chr5.3:62970403-62970422 MS.gene064498:intron 30.0%
TGATAAAATACAAGAGTCAC+CGG + chr5.3:62976262-62976281 None:intergenic 30.0%
TGCTATACGAAAAACAACAA+AGG + chr5.3:62974811-62974830 None:intergenic 30.0%
TGTCACAATACTTTATGTTG+GGG - chr5.3:62970405-62970424 MS.gene064498:intron 30.0%
TTACTAATGTTTCCAAGAAG+GGG - chr5.3:62975327-62975346 MS.gene064498:intron 30.0%
TTACTTTCAAGGTTGAACTT+TGG - chr5.3:62973448-62973467 MS.gene064498:intron 30.0%
TTCAACCTTGAAAGTAAAAG+TGG + chr5.3:62973445-62973464 None:intergenic 30.0%
TTTGTTGAGTAACAAGTGTT+TGG + chr5.3:62973213-62973232 None:intergenic 30.0%
! AAAAACGTTCCTCTTTTTAG+TGG - chr5.3:62972714-62972733 MS.gene064498:intron 30.0%
! AAATTTAAGTTTGATCCTCG+AGG + chr5.3:62974934-62974953 None:intergenic 30.0%
! AAGGCTTTTATCTTATGGAA+TGG - chr5.3:62975146-62975165 MS.gene064498:intron 30.0%
! ACATTGATCTTTTCGTCAAT+CGG - chr5.3:62972978-62972997 MS.gene064498:intron 30.0%
! CAACTATATTTTGTCTGTGA+TGG - chr5.3:62973695-62973714 MS.gene064498:CDS 30.0%
! CATAATGCATTTTGAACTCA+TGG + chr5.3:62974366-62974385 None:intergenic 30.0%
! CCATCATAATCTGTCTTTTT+GGG + chr5.3:62974646-62974665 None:intergenic 30.0%
! CCATTTCTTCTTTGTTCTTT+TGG + chr5.3:62976171-62976190 None:intergenic 30.0%
! CTGACTTTTTGCAAATCAAA+CGG + chr5.3:62973106-62973125 None:intergenic 30.0%
! CTTCTTTACTTGTTAGAGAA+GGG - chr5.3:62975049-62975068 MS.gene064498:intron 30.0%
! TCCATCATAATCTGTCTTTT+TGG + chr5.3:62974647-62974666 None:intergenic 30.0%
! TCTATGTTTTCCCATATTTC+AGG - chr5.3:62973768-62973787 MS.gene064498:CDS 30.0%
! TGTATTTTATCAGAAGATGC+TGG - chr5.3:62976270-62976289 MS.gene064498:CDS 30.0%
! TTCTTTACTTGTTAGAGAAG+GGG - chr5.3:62975050-62975069 MS.gene064498:intron 30.0%
! TTCTTTTCTTTCACAGGATA+TGG - chr5.3:62972008-62972027 MS.gene064498:intron 30.0%
! TTGGGGTGATAGAAATTTTT+GGG - chr5.3:62970422-62970441 MS.gene064498:intron 30.0%
! TTTGTTCTCAATTTGTTCAC+TGG - chr5.3:62972451-62972470 MS.gene064498:intron 30.0%
!! ACCTTTTCATACTTGTTTTC+AGG - chr5.3:62975351-62975370 MS.gene064498:intron 30.0%
!! CCTTATAATGTCGGTTTAAT+AGG - chr5.3:62969800-62969819 MS.gene064498:intron 30.0%
!! CTTGATTTGCTATCATATAC+TGG - chr5.3:62975587-62975606 MS.gene064498:intron 30.0%
!! GTTTGATTTGCAAAAAGTCA+GGG - chr5.3:62973105-62973124 MS.gene064498:intron 30.0%
!! TTCCTCTACTCTTTTTGTTT+GGG - chr5.3:62971419-62971438 MS.gene064498:intron 30.0%
!!! TGTGCAATTTTTCAGGAATT+TGG - chr5.3:62970920-62970939 MS.gene064498:intron 30.0%
!!! TGTTTTGATTAGCTCTTGAA+TGG + chr5.3:62976217-62976236 None:intergenic 30.0%
AAAACCAGAAGTCATGACAA+AGG + chr5.3:62970775-62970794 None:intergenic 35.0%
AAAATTTACCGCAGAGCAAT+AGG + chr5.3:62969695-62969714 None:intergenic 35.0%
AAACCAGAAGTCATGACAAA+GGG + chr5.3:62970774-62970793 None:intergenic 35.0%
AAAGGTTAACCTCAATGAAC+TGG + chr5.3:62970826-62970845 None:intergenic 35.0%
AAATGCATTATGCTACTCTC+CGG - chr5.3:62974374-62974393 MS.gene064498:intron 35.0%
ACACGTGCAAGAAATGATAA+CGG + chr5.3:62973566-62973585 None:intergenic 35.0%
ACCATCATCTATCCTAAAAG+AGG + chr5.3:62975076-62975095 None:intergenic 35.0%
ACCTATATAGATATTCCTCG+AGG - chr5.3:62974916-62974935 MS.gene064498:CDS 35.0%
ACCTTTGTCATTGATCTTCT+TGG - chr5.3:62970010-62970029 MS.gene064498:intron 35.0%
ACTCAACAAACTGTAGGAAT+AGG - chr5.3:62973223-62973242 MS.gene064498:intron 35.0%
ACTGATATATGGCAGGAAAT+GGG + chr5.3:62972783-62972802 None:intergenic 35.0%
ACTTTCCATGGAAATTTCAC+TGG - chr5.3:62970291-62970310 MS.gene064498:intron 35.0%
AGAATCTGATCTTGCTTTGA+AGG - chr5.3:62974555-62974574 MS.gene064498:intron 35.0%
AGGTCCTTTAGCATCATTTA+TGG - chr5.3:62972337-62972356 MS.gene064498:intron 35.0%
AGTATTAGACAACCTTCTAG+AGG - chr5.3:62974291-62974310 MS.gene064498:intron 35.0%
ATGAGGAATTCTTTCTTCCT+GGG - chr5.3:62973639-62973658 MS.gene064498:CDS 35.0%
ATTGTTACTATGGCTACTGT+CGG - chr5.3:62971173-62971192 MS.gene064498:intron 35.0%
CAGAATACATTTCTCACTTG+AGG - chr5.3:62970092-62970111 MS.gene064498:intron 35.0%
CATAGTCTATCCAAGATCTA+TGG - chr5.3:62969858-62969877 MS.gene064498:intron 35.0%
CCCAAAAAGACAGATTATGA+TGG - chr5.3:62974643-62974662 MS.gene064498:intron 35.0%
CTACTTGAAGCAGTTAAGAA+TGG - chr5.3:62975012-62975031 MS.gene064498:CDS 35.0%
CTCAAGTGAGAAATGTATTC+TGG + chr5.3:62970094-62970113 None:intergenic 35.0%
CTGTAATTTCTTGGGGAAAA+GGG + chr5.3:62975982-62976001 None:intergenic 35.0%
CTGTTATGAAATTACTGTCC+TGG - chr5.3:62971747-62971766 MS.gene064498:CDS 35.0%
CTTAGCTAAATAAATTGCGC+AGG + chr5.3:62970665-62970684 None:intergenic 35.0%
CTTGTTACTCAACAAACTGT+AGG - chr5.3:62973217-62973236 MS.gene064498:intron 35.0%
CTTTCCATGGAAATTTCACT+GGG - chr5.3:62970292-62970311 MS.gene064498:intron 35.0%
GCATCATTTATGGTTGTCTA+TGG - chr5.3:62972347-62972366 MS.gene064498:intron 35.0%
GCATGAATCGGGTAATAAAA+GGG + chr5.3:62973851-62973870 None:intergenic 35.0%
GGATATCCGTGAACAAATAA+AGG - chr5.3:62972217-62972236 MS.gene064498:CDS 35.0%
GTCTATTAGAGGTAAGCAAT+TGG - chr5.3:62974501-62974520 MS.gene064498:intron 35.0%
GTTGACATTTCATTGCAAAC+TGG + chr5.3:62970226-62970245 None:intergenic 35.0%
GTTTCATTTGACATGGTTCT+TGG - chr5.3:62972080-62972099 MS.gene064498:intron 35.0%
TAATCCCAGTGAAATTTCCA+TGG + chr5.3:62970299-62970318 None:intergenic 35.0%
TACATGGATCTACATAGAAG+CGG + chr5.3:62971890-62971909 None:intergenic 35.0%
TACTGATATATGGCAGGAAA+TGG + chr5.3:62972784-62972803 None:intergenic 35.0%
TAGAAATGGGAATATCCTGA+AGG + chr5.3:62972289-62972308 None:intergenic 35.0%
TCAATTACAGTACCTGTCTT+TGG + chr5.3:62975280-62975299 None:intergenic 35.0%
TCAGACATCACATTCCATAT+TGG - chr5.3:62974526-62974545 MS.gene064498:intron 35.0%
TCAGTACCTGTAATTTCTTG+GGG + chr5.3:62975989-62976008 None:intergenic 35.0%
TCATTTCACGCAAAACAGAT+GGG - chr5.3:62975865-62975884 MS.gene064498:CDS 35.0%
TCCAAAACAGAACATCAACA+TGG - chr5.3:62975619-62975638 MS.gene064498:intron 35.0%
TCCAAGAAGATCAATGACAA+AGG + chr5.3:62970014-62970033 None:intergenic 35.0%
TCCAGTATAAAGAGATTCTC+TGG + chr5.3:62969575-62969594 None:intergenic 35.0%
TCCCATTTCTATTCGATCTA+AGG - chr5.3:62972298-62972317 MS.gene064498:intron 35.0%
TCCTCGAGGAATATCTATAT+AGG + chr5.3:62974920-62974939 None:intergenic 35.0%
TCTCACTTGAGGAATTGTAT+TGG - chr5.3:62970103-62970122 MS.gene064498:intron 35.0%
TGAAAGTTTCCAGTTCATTG+AGG - chr5.3:62970814-62970833 MS.gene064498:CDS 35.0%
TGGAAAATGTGAACAGAAGA+TGG + chr5.3:62972611-62972630 None:intergenic 35.0%
TTATTCAGCATGCAGAAAAG+AGG + chr5.3:62973503-62973522 None:intergenic 35.0%
TTCATTTCACGCAAAACAGA+TGG - chr5.3:62975864-62975883 MS.gene064498:CDS 35.0%
TTCCCAAACAAAAAGAGTAG+AGG + chr5.3:62971424-62971443 None:intergenic 35.0%
TTCTTAACTGCTTCAAGTAG+CGG + chr5.3:62975012-62975031 None:intergenic 35.0%
TTGCGAAGCCTGTTATTAAA+AGG - chr5.3:62970615-62970634 MS.gene064498:intron 35.0%
TTTGCAAAAAGTCAGGGTAA+TGG - chr5.3:62973111-62973130 MS.gene064498:intron 35.0%
TTTGGTAAAAACACTAGCTC+CGG + chr5.3:62975262-62975281 None:intergenic 35.0%
! AACTGTAGGAATAGGAGTAT+AGG - chr5.3:62973231-62973250 MS.gene064498:intron 35.0%
! ACCATGTTGATGTTCTGTTT+TGG + chr5.3:62975623-62975642 None:intergenic 35.0%
! AGAGAGTTGTGCAATTTTTC+AGG - chr5.3:62970913-62970932 MS.gene064498:intron 35.0%
! AGAGGAACGTTTTTGATGTA+TGG + chr5.3:62972708-62972727 None:intergenic 35.0%
! AGCCAAGTATTTTGTAACCA+GGG + chr5.3:62975767-62975786 None:intergenic 35.0%
! AGGACAAATAGCTTTTCTTG+TGG - chr5.3:62969601-62969620 MS.gene064498:CDS 35.0%
! ATCTTTTCGTCAATCGGAAA+TGG - chr5.3:62972984-62973003 MS.gene064498:intron 35.0%
! ATGGATAGGAAGTTTGAAAC+TGG - chr5.3:62971079-62971098 MS.gene064498:intron 35.0%
! ATTCTAGAAAACAGTAGCGT+CGG + chr5.3:62975468-62975487 None:intergenic 35.0%
! CAAATTTCTGCTGGAGTTTT+AGG - chr5.3:62972585-62972604 MS.gene064498:intron 35.0%
! CTTCCTCTACTCTTTTTGTT+TGG - chr5.3:62971418-62971437 MS.gene064498:intron 35.0%
! GAGGTTAACCTTTTATGAAC+AGG - chr5.3:62970833-62970852 MS.gene064498:CDS 35.0%
! GATAAAATTAGAGGGGTATG+CGG - chr5.3:62971338-62971357 MS.gene064498:CDS 35.0%
! GCAAAGTTGTTATTAGAAGC+CGG - chr5.3:62975240-62975259 MS.gene064498:intron 35.0%
! GCAACTTTCTTTTCTTTCAC+AGG - chr5.3:62972002-62972021 MS.gene064498:intron 35.0%
! GCTTCTTTACTTGTTAGAGA+AGG - chr5.3:62975048-62975067 MS.gene064498:intron 35.0%
! GTCAATAGAACAGCTTTTGA+TGG - chr5.3:62974577-62974596 MS.gene064498:intron 35.0%
! GTTAAGATTAATGTTGGCTG+TGG - chr5.3:62970690-62970709 MS.gene064498:CDS 35.0%
! GTTGGGGTGATAGAAATTTT+TGG - chr5.3:62970421-62970440 MS.gene064498:intron 35.0%
! TCCTGCATTGAAACAGTTTT+GGG + chr5.3:62974073-62974092 None:intergenic 35.0%
! TGGATAGGAAGTTTGAAACT+GGG - chr5.3:62971080-62971099 MS.gene064498:intron 35.0%
! TTATGATGGAAGATCACCTT+TGG - chr5.3:62974657-62974676 MS.gene064498:intron 35.0%
! TTTTATTACCCGATTCATGC+CGG - chr5.3:62973851-62973870 MS.gene064498:CDS 35.0%
! TTTTGTAACCAGGGGAAAAA+TGG + chr5.3:62975758-62975777 None:intergenic 35.0%
!! CAGATTCTAGCTTTCCAATA+TGG + chr5.3:62974543-62974562 None:intergenic 35.0%
!! CGTTTGATTTGCAAAAAGTC+AGG - chr5.3:62973104-62973123 MS.gene064498:intron 35.0%
!! CTAGTGTTTTTACCAAAGAC+AGG - chr5.3:62975265-62975284 MS.gene064498:intron 35.0%
!! CTATACAACAATAACGGATG+CGG + chr5.3:62969886-62969905 None:intergenic 35.0%
!! CTTCCTTGTTTCTTTTCTGT+AGG - chr5.3:62969975-62969994 MS.gene064498:CDS 35.0%
!! CTTTCATCTTTCAGGTTACT+AGG - chr5.3:62973612-62973631 MS.gene064498:CDS 35.0%
!! TAACAGATGGTGTTGTGATT+TGG + chr5.3:62971733-62971752 None:intergenic 35.0%
!!! ACATTTTCCATGAAAGCATC+TGG - chr5.3:62972621-62972640 MS.gene064498:intron 35.0%
!!! ATGGAGTTTGGATTTTTTCG+TGG - chr5.3:62969545-62969564 MS.gene064498:CDS 35.0%
!!! CGATAAGTTTTGGAATGGAA+AGG + chr5.3:62975832-62975851 None:intergenic 35.0%
!!! TACTGCCACTTTTACTTTCA+AGG - chr5.3:62973437-62973456 MS.gene064498:intron 35.0%
!!! TCTTTTAGGATAGATGATGG+TGG - chr5.3:62975075-62975094 MS.gene064498:intron 35.0%
!!! TGGTAGTTTTTTATGCTCAG+CGG - chr5.3:62975095-62975114 MS.gene064498:intron 35.0%
!!! TGTTGATCCCCTTAGTTTTA+AGG + chr5.3:62972886-62972905 None:intergenic 35.0%
AAAACAGCAGCAGAACAGAT+AGG - chr5.3:62976231-62976250 MS.gene064498:CDS 40.0%
AACAGCTGTGTCATGAACTA+AGG + chr5.3:62971809-62971828 None:intergenic 40.0%
AACCTAGCACACTAGTGAAT+TGG + chr5.3:62975395-62975414 None:intergenic 40.0%
AACTGCTGTGAAAGAAGAAC+AGG + chr5.3:62970183-62970202 None:intergenic 40.0%
AAGTAGGCATAGCTGATGAT+GGG - chr5.3:62974095-62974114 MS.gene064498:intron 40.0%
AATCCCTTTGTCATGACTTC+TGG - chr5.3:62970768-62970787 MS.gene064498:CDS 40.0%
ACCTAGCACACTAGTGAATT+GGG + chr5.3:62975394-62975413 None:intergenic 40.0%
AGACTGAAAAGTTTAGGGAC+AGG - chr5.3:62972150-62972169 MS.gene064498:intron 40.0%
AGGATTGTTTATCAATCCGC+AGG + chr5.3:62974231-62974250 None:intergenic 40.0%
AGTCATAGCTTCTGAGTAAC+TGG - chr5.3:62973802-62973821 MS.gene064498:CDS 40.0%
AGTTTAACCCCTCATAGCAA+TGG - chr5.3:62970476-62970495 MS.gene064498:intron 40.0%
ATATAGCCAACTCCACTTAG+TGG + chr5.3:62975536-62975555 None:intergenic 40.0%
ATGAAATTACTGTCCTGGTG+TGG - chr5.3:62971752-62971771 MS.gene064498:CDS 40.0%
ATGGAAGATCACCTTTGGTA+AGG - chr5.3:62974662-62974681 MS.gene064498:intron 40.0%
CAAAACTGTTTCAATGCAGG+AGG - chr5.3:62974072-62974091 MS.gene064498:intron 40.0%
CAAGACTTATGCTTACCAAG+TGG + chr5.3:62971593-62971612 None:intergenic 40.0%
CAGGAAGAAAGAATTCCTCA+TGG + chr5.3:62973640-62973659 None:intergenic 40.0%
CAGGGAAAAGAGTCTATTAG+AGG - chr5.3:62974490-62974509 MS.gene064498:intron 40.0%
CATGAGGAATTCTTTCTTCC+TGG - chr5.3:62973638-62973657 MS.gene064498:CDS 40.0%
CATTTCACGCAAAACAGATG+GGG - chr5.3:62975866-62975885 MS.gene064498:CDS 40.0%
CCTGTAATTTCTTGGGGAAA+AGG + chr5.3:62975983-62976002 None:intergenic 40.0%
CTACAAACCAGATGCTTTCA+TGG + chr5.3:62972631-62972650 None:intergenic 40.0%
CTGATATATGGCAGGAAATG+GGG + chr5.3:62972782-62972801 None:intergenic 40.0%
CTTTGATCCCTTGACTATCA+AGG + chr5.3:62972132-62972151 None:intergenic 40.0%
GAAGTAGAACCTTGTAGATG+AGG + chr5.3:62970051-62970070 None:intergenic 40.0%
GCCAGAGAATCTCTTTATAC+TGG - chr5.3:62969571-62969590 MS.gene064498:CDS 40.0%
GGCATGAATCGGGTAATAAA+AGG + chr5.3:62973852-62973871 None:intergenic 40.0%
GGGGAAGTTATAATGCAACA+AGG - chr5.3:62973659-62973678 MS.gene064498:CDS 40.0%
GTATAAAGAGATTCTCTGGC+AGG + chr5.3:62969571-62969590 None:intergenic 40.0%
GTTTCCTCTTTGTTGACCTA+TGG + chr5.3:62973972-62973991 None:intergenic 40.0%
TATAGCCAACTCCACTTAGT+GGG + chr5.3:62975535-62975554 None:intergenic 40.0%
TATATGCTGAAATGGGATGC+TGG - chr5.3:62969917-62969936 MS.gene064498:CDS 40.0%
TATGAAAAGGTTCCCCTTCT+TGG + chr5.3:62975342-62975361 None:intergenic 40.0%
TCACAAACACGAACAGTATG+TGG + chr5.3:62974196-62974215 None:intergenic 40.0%
TCCACAAGCCTGTTCATAAA+AGG + chr5.3:62970844-62970863 None:intergenic 40.0%
TCCCCTGGTTACAAAATACT+TGG - chr5.3:62975762-62975781 MS.gene064498:intron 40.0%
TCGTGTTTGTGAACTGTGTA+GGG - chr5.3:62974204-62974223 MS.gene064498:intron 40.0%
TCTTCCATAGGTCAACAAAG+AGG - chr5.3:62973965-62973984 MS.gene064498:intron 40.0%
TCTTCTTTCACAGCAGTTCA+AGG - chr5.3:62970185-62970204 MS.gene064498:intron 40.0%
TGAGGAATTCTTTCTTCCTG+GGG - chr5.3:62973640-62973659 MS.gene064498:CDS 40.0%
TGTTGCATTATAACTTCCCC+AGG + chr5.3:62973659-62973678 None:intergenic 40.0%
TTATGCTTACCAAGTGGAGT+TGG + chr5.3:62971587-62971606 None:intergenic 40.0%
TTCAGATGCAGCAACATGTA+GGG + chr5.3:62975205-62975224 None:intergenic 40.0%
TTCGTGTTTGTGAACTGTGT+AGG - chr5.3:62974203-62974222 MS.gene064498:intron 40.0%
TTTATGAACAGGCTTGTGGA+CGG - chr5.3:62970844-62970863 MS.gene064498:CDS 40.0%
TTTCTTGCACGTGTAATGTC+AGG - chr5.3:62973572-62973591 MS.gene064498:intron 40.0%
! ACCTTTTATGAACAGGCTTG+TGG - chr5.3:62970840-62970859 MS.gene064498:CDS 40.0%
! AGGAAGTGAGGTACCTATTA+TGG - chr5.3:62970871-62970890 MS.gene064498:CDS 40.0%
! ATGACAGCCTTGATAGTCAA+GGG - chr5.3:62972122-62972141 MS.gene064498:intron 40.0%
! ATTAGCTCTTGAATGGTGTG+TGG + chr5.3:62976210-62976229 None:intergenic 40.0%
! CAGCCAAGTATTTTGTAACC+AGG + chr5.3:62975768-62975787 None:intergenic 40.0%
! CATAGAAGCGGTTCTGATAA+CGG + chr5.3:62971878-62971897 None:intergenic 40.0%
! CCTTTTCCCCAAGAAATTAC+AGG - chr5.3:62975980-62975999 MS.gene064498:intron 40.0%
! CTAACAAGTTTGATTCGAGC+TGG - chr5.3:62974613-62974632 MS.gene064498:intron 40.0%
! CTCCTGCATTGAAACAGTTT+TGG + chr5.3:62974074-62974093 None:intergenic 40.0%
! CTTTGTTCTTTTGGATCCCA+CGG + chr5.3:62976162-62976181 None:intergenic 40.0%
! GATTTGGTCTGTGAAAACAG+TGG + chr5.3:62971717-62971736 None:intergenic 40.0%
! GCAGAACAGATAGGATTTTC+CGG - chr5.3:62976240-62976259 MS.gene064498:CDS 40.0%
! GCCAAGTATTTTGTAACCAG+GGG + chr5.3:62975766-62975785 None:intergenic 40.0%
! TAGAAGTGCAACAGTTTCCT+CGG + chr5.3:62974122-62974141 None:intergenic 40.0%
! TTCTAGAAAACAGTAGCGTC+GGG + chr5.3:62975467-62975486 None:intergenic 40.0%
! TTGTTGTGTTTCTGTTTCGC+TGG - chr5.3:62970518-62970537 MS.gene064498:intron 40.0%
! TTTGCTGCTGCAGTTTTTCT+AGG - chr5.3:62971835-62971854 MS.gene064498:intron 40.0%
!! ATACTTTTGGTGGCTAAAGC+TGG - chr5.3:62972826-62972845 MS.gene064498:intron 40.0%
!! CTATAACGGACAATCTTGGT+CGG + chr5.3:62975703-62975722 None:intergenic 40.0%
!! GAAGAGCATCCACTAAAAAG+AGG + chr5.3:62972726-62972745 None:intergenic 40.0%
!! GGAAGCTCTCTTTTGCTTTT+TGG - chr5.3:62972847-62972866 MS.gene064498:intron 40.0%
!! GTTCTTGGTGCTTACTTGAT+CGG - chr5.3:62972095-62972114 MS.gene064498:intron 40.0%
!! TATCAACAAGCATTGGAAGC+AGG + chr5.3:62972431-62972450 None:intergenic 40.0%
!! TCACCTATAACGGACAATCT+TGG + chr5.3:62975707-62975726 None:intergenic 40.0%
!!! GCCTCTTTTAGGATAGATGA+TGG - chr5.3:62975072-62975091 MS.gene064498:intron 40.0%
!!! TTGGCTGTGGTTTTGAAACA+TGG - chr5.3:62970703-62970722 MS.gene064498:CDS 40.0%
AACCAGGGGAAAAATGGAGA+AGG + chr5.3:62975752-62975771 None:intergenic 45.0%
ACACTACCTGAATCCCAAGA+GGG - chr5.3:62971050-62971069 MS.gene064498:CDS 45.0%
ACGATTGCAAACCATGCGAT+AGG + chr5.3:62969669-62969688 None:intergenic 45.0%
AGCATTATCCGGCATGAATC+GGG + chr5.3:62973862-62973881 None:intergenic 45.0%
ATACTCCGCTTGATGAAGCT+CGG - chr5.3:62975891-62975910 MS.gene064498:intron 45.0%
ATCGTACTCCTATTGCTCTG+CGG - chr5.3:62969684-62969703 MS.gene064498:CDS 45.0%
ATCTTCTTGGATGTATGCCC+TGG - chr5.3:62970023-62970042 MS.gene064498:intron 45.0%
CACATCGTAGATGAAGAGGA+TGG + chr5.3:62974730-62974749 None:intergenic 45.0%
CAGCATTATCCGGCATGAAT+CGG + chr5.3:62973863-62973882 None:intergenic 45.0%
CATCCTCTTCATCTACGATG+TGG - chr5.3:62974728-62974747 MS.gene064498:CDS 45.0%
CCACTTAGTGGGATAAGACT+TGG + chr5.3:62975524-62975543 None:intergenic 45.0%
CGACCAAGATTGTCCGTTAT+AGG - chr5.3:62975701-62975720 MS.gene064498:intron 45.0%
CGGACCCTTGAATTCTTTCA+AGG + chr5.3:62973086-62973105 None:intergenic 45.0%
CGTTTCAAGCTCCTTACCAA+AGG + chr5.3:62974676-62974695 None:intergenic 45.0%
CTACATGTTGCTGCATCTGA+AGG - chr5.3:62975204-62975223 MS.gene064498:intron 45.0%
CTTATCCCACTAAGTGGAGT+TGG - chr5.3:62975527-62975546 MS.gene064498:intron 45.0%
CTTCACCCAACCTATGTAGT+GGG - chr5.3:62971273-62971292 MS.gene064498:CDS 45.0%
CTTCAGATGCAGCAACATGT+AGG + chr5.3:62975206-62975225 None:intergenic 45.0%
CTTTGGCGACAAATTTCTGC+TGG - chr5.3:62972576-62972595 MS.gene064498:intron 45.0%
GAAGTAGGCATAGCTGATGA+TGG - chr5.3:62974094-62974113 MS.gene064498:intron 45.0%
GCCCAAAACTGTTTCAATGC+AGG - chr5.3:62974069-62974088 MS.gene064498:intron 45.0%
GGGGATCAACACTTTCTAAC+TGG - chr5.3:62972895-62972914 MS.gene064498:intron 45.0%
GGTGTAGACATCAACGTCAA+AGG - chr5.3:62974883-62974902 MS.gene064498:CDS 45.0%
GTTTCAATGCAGGAGGAAGT+AGG - chr5.3:62974079-62974098 MS.gene064498:intron 45.0%
TACACTACCTGAATCCCAAG+AGG - chr5.3:62971049-62971068 MS.gene064498:CDS 45.0%
TAGCAATGGCACATGTGTCA+TGG - chr5.3:62970490-62970509 MS.gene064498:intron 45.0%
TATCCATGTGTAGCCCTCTT+GGG + chr5.3:62971066-62971085 None:intergenic 45.0%
TCACCACATCGTAGATGAAG+AGG + chr5.3:62974734-62974753 None:intergenic 45.0%
TCAGATGCAGCAACATGTAG+GGG + chr5.3:62975204-62975223 None:intergenic 45.0%
TCCTTGTAACCAACTCCACT+TGG - chr5.3:62971575-62971594 MS.gene064498:intron 45.0%
TCTTCACCCAACCTATGTAG+TGG - chr5.3:62971272-62971291 MS.gene064498:CDS 45.0%
TCTTCTTGGATGTATGCCCT+GGG - chr5.3:62970024-62970043 MS.gene064498:intron 45.0%
TTACTATGGCTACTGTCGGT+AGG - chr5.3:62971177-62971196 MS.gene064498:intron 45.0%
TTGATATGTCTCACCACACC+AGG + chr5.3:62971768-62971787 None:intergenic 45.0%
TTTCAAACTGCAAACGCACG+TGG + chr5.3:62972244-62972263 None:intergenic 45.0%
! ACACATGTGCCATTGCTATG+AGG + chr5.3:62970488-62970507 None:intergenic 45.0%
! ACATGTGCCATTGCTATGAG+GGG + chr5.3:62970486-62970505 None:intergenic 45.0%
! ACCAAGTGGAGTTGGTTACA+AGG + chr5.3:62971579-62971598 None:intergenic 45.0%
! CACATGTGCCATTGCTATGA+GGG + chr5.3:62970487-62970506 None:intergenic 45.0%
! CATGACAGCCTTGATAGTCA+AGG - chr5.3:62972121-62972140 MS.gene064498:intron 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - chr5.3:62975521-62975540 MS.gene064498:intron 45.0%
! CGTGGCCCTTTATTTGTTCA+CGG + chr5.3:62972226-62972245 None:intergenic 45.0%
! TTAGAGAAGGGGCCTCTTTT+AGG - chr5.3:62975061-62975080 MS.gene064498:intron 45.0%
! TTTTATGCGCCCTTGTCCAT+TGG - chr5.3:62973015-62973034 MS.gene064498:intron 45.0%
!! TTCCTTCTCCATTTTTCCCC+TGG - chr5.3:62975747-62975766 MS.gene064498:intron 45.0%
!! TTTTGTCTGTGATGGTGTGC+TGG - chr5.3:62973703-62973722 MS.gene064498:CDS 45.0%
!! AATAATAATTATATGATTTA+TGG + chr5.3:62975561-62975580 None:intergenic 5.0%
!! ATAATAATTATATGATTTAT+GGG + chr5.3:62975560-62975579 None:intergenic 5.0%
!! TAAAATAAAAGTTATATATA+TGG + chr5.3:62973332-62973351 None:intergenic 5.0%
AACCTTGTAGATGAGGTCCC+AGG + chr5.3:62970044-62970063 None:intergenic 50.0%
AATCCCAAGAGGGCTACACA+TGG - chr5.3:62971060-62971079 MS.gene064498:intron 50.0%
ACACGAACAGTATGTGGCTG+AGG + chr5.3:62974190-62974209 None:intergenic 50.0%
ACATCCATGCCGTGTTCAAC+CGG + chr5.3:62974396-62974415 None:intergenic 50.0%
ACCACTCCCACTACATAGGT+TGG + chr5.3:62971282-62971301 None:intergenic 50.0%
ACCTTGTAGATGAGGTCCCA+GGG + chr5.3:62970043-62970062 None:intergenic 50.0%
AGACAGTCAGACCTATCGCA+TGG - chr5.3:62969655-62969674 MS.gene064498:CDS 50.0%
AGATGCAGCAACATGTAGGG+GGG + chr5.3:62975202-62975221 None:intergenic 50.0%
AGCGGTTGCAAGAGGAGATT+CGG - chr5.3:62975113-62975132 MS.gene064498:intron 50.0%
CAAGAGGGCTACACATGGAT+AGG - chr5.3:62971065-62971084 MS.gene064498:intron 50.0%
CAGATGCAGCAACATGTAGG+GGG + chr5.3:62975203-62975222 None:intergenic 50.0%
CCACTCCCACTACATAGGTT+GGG + chr5.3:62971281-62971300 None:intergenic 50.0%
CTAGAGCGCAACAGCTCATT+TGG - chr5.3:62974139-62974158 MS.gene064498:intron 50.0%
CTATCCATGTGTAGCCCTCT+TGG + chr5.3:62971067-62971086 None:intergenic 50.0%
CTCATCCGAGCTTCATCAAG+CGG + chr5.3:62975899-62975918 None:intergenic 50.0%
CTTGATGAAGCTCGGATGAG+TGG - chr5.3:62975899-62975918 MS.gene064498:intron 50.0%
GCCCAATTCACTAGTGTGCT+AGG - chr5.3:62975390-62975409 MS.gene064498:intron 50.0%
GGGAACACTGTGCACTTCTT+TGG + chr5.3:62976132-62976151 None:intergenic 50.0%
TAGCATCTTGCTGCATGCAG+AGG - chr5.3:62974826-62974845 MS.gene064498:CDS 50.0%
TCAGGTTACTAGGCTCCATG+AGG - chr5.3:62973622-62973641 MS.gene064498:CDS 50.0%
TGCTACTCTCCGGTTGAACA+CGG - chr5.3:62974384-62974403 MS.gene064498:intron 50.0%
TGCTGCATGCAGAGGATATG+AGG - chr5.3:62974834-62974853 MS.gene064498:CDS 50.0%
TTATGCTCAGCGGTTGCAAG+AGG - chr5.3:62975105-62975124 MS.gene064498:intron 50.0%
TTTGGATCCCACGGATGGAA+CGG + chr5.3:62976153-62976172 None:intergenic 50.0%
! GTTCTTTTGGATCCCACGGA+TGG + chr5.3:62976158-62976177 None:intergenic 50.0%
!! CAACAAGCATTGGAAGCAGG+TGG + chr5.3:62972428-62972447 None:intergenic 50.0%
AGTGTTCCCGTTCCATCCGT+GGG - chr5.3:62976143-62976162 MS.gene064498:intron 55.0%
GCAGACCACTCCCACTACAT+AGG + chr5.3:62971286-62971305 None:intergenic 55.0%
GTGAACTGTGTAGGGTCCTG+CGG - chr5.3:62974212-62974231 MS.gene064498:intron 55.0%
GTGTAGCCCTCTTGGGATTC+AGG + chr5.3:62971059-62971078 None:intergenic 55.0%
TTGGATCCCACGGATGGAAC+GGG + chr5.3:62976152-62976171 None:intergenic 55.0%
! CCCAACCTATGTAGTGGGAG+TGG - chr5.3:62971278-62971297 MS.gene064498:CDS 55.0%
!! CATAGCTGATGATGGGTCCG+AGG - chr5.3:62974102-62974121 MS.gene064498:intron 55.0%
!! GGATGCGGTGCCATAGATCT+TGG + chr5.3:62969871-62969890 None:intergenic 55.0%
ACAGGCTTGTGGACGGAGAG+AGG - chr5.3:62970851-62970870 MS.gene064498:CDS 60.0%
CACTGACGCTGCAGTCCTTC+AGG - chr5.3:62972271-62972290 MS.gene064498:intron 60.0%
CAGTGTTCCCGTTCCATCCG+TGG - chr5.3:62976142-62976161 MS.gene064498:intron 60.0%
CTCTCCGGTTGAACACGGCA+TGG - chr5.3:62974389-62974408 MS.gene064498:intron 60.0%
GCCCTGGGACCTCATCTACA+AGG - chr5.3:62970039-62970058 MS.gene064498:intron 60.0%
GTGGACGGAGAGAGGAAGTG+AGG - chr5.3:62970859-62970878 MS.gene064498:CDS 60.0%
! AAACAGTAGCGTCGGGCGTC+AGG + chr5.3:62975460-62975479 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 62969545 62976359 62969545 ID=MS.gene064498
chr5.3 mRNA 62969545 62976359 62969545 ID=MS.gene064498.t1;Parent=MS.gene064498
chr5.3 exon 62976199 62976359 62976199 ID=MS.gene064498.t1.exon1;Parent=MS.gene064498.t1
chr5.3 CDS 62976199 62976359 62976199 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62975844 62975907 62975844 ID=MS.gene064498.t1.exon2;Parent=MS.gene064498.t1
chr5.3 CDS 62975844 62975907 62975844 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62974710 62975049 62974710 ID=MS.gene064498.t1.exon3;Parent=MS.gene064498.t1
chr5.3 CDS 62974710 62975049 62974710 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62973585 62973880 62973585 ID=MS.gene064498.t1.exon4;Parent=MS.gene064498.t1
chr5.3 CDS 62973585 62973880 62973585 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62973140 62973220 62973140 ID=MS.gene064498.t1.exon5;Parent=MS.gene064498.t1
chr5.3 CDS 62973140 62973220 62973140 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62972180 62972278 62972180 ID=MS.gene064498.t1.exon6;Parent=MS.gene064498.t1
chr5.3 CDS 62972180 62972278 62972180 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62971592 62971813 62971592 ID=MS.gene064498.t1.exon7;Parent=MS.gene064498.t1
chr5.3 CDS 62971592 62971813 62971592 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62971226 62971411 62971226 ID=MS.gene064498.t1.exon8;Parent=MS.gene064498.t1
chr5.3 CDS 62971226 62971411 62971226 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62971000 62971075 62971000 ID=MS.gene064498.t1.exon9;Parent=MS.gene064498.t1
chr5.3 CDS 62971000 62971075 62971000 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62970618 62970912 62970618 ID=MS.gene064498.t1.exon10;Parent=MS.gene064498.t1
chr5.3 CDS 62970618 62970912 62970618 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62969903 62970021 62969903 ID=MS.gene064498.t1.exon11;Parent=MS.gene064498.t1
chr5.3 CDS 62969903 62970021 62969903 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
chr5.3 exon 62969545 62969786 62969545 ID=MS.gene064498.t1.exon12;Parent=MS.gene064498.t1
chr5.3 CDS 62969545 62969786 62969545 ID=cds.MS.gene064498.t1;Parent=MS.gene064498.t1
Gene Sequence

>MS.gene064498

ATGGAGTTTGGATTTTTTCGTGGCCTGCCAGAGAATCTCTTTATACTGGATATTGTAGGACAAATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGCATGGTTTGCAATCGTACTCCTATTGCTCTGCGGTAAATTTTCTCCTTATGTTGTATTTCTTGATAATAGTTACACATTTGATAGATATAGTCTGAAACAATGTTTATAATTGTGAGATATCTCTCACCTTATAATGTCGGTTTAATAGGTTAAGTGTGACACAATATAATTTTTATGATGGTATCATAGTCTATCCAAGATCTATGGCACCGCATCCGTTATTGTTGTATAGCTGATATTTGATATATGCTGAAATGGGATGCTGGTCAGCATATTGAATTGTTTTTCATTTGATTTATGGCTTCCTTGTTTCTTTTCTGTAGGTATCTAAAATCTACCTTTGTCATTGATCTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGGTTCTACTTCTTGCAGATAAACCTAAATTTCCAGAATACATTTCTCACTTGAGGAATTGTATTGGCCTCTATAATTTACTATGATCCTAAACATTGTTTCAAAAATGATTTATATAATGCCTGTTCTTCTTTCACAGCAGTTCAAGGCTTTTAGCATATTTTCCAGTTTGCAATGAAATGTCAACTATTAGAATTAGAGGAAACTTTATCCCCATTTTACTTTTTCTTTAACTTTCCATGGAAATTTCACTGGGATTAGATTTGATTTTAAATCATTTTAACATCTATATAAAGTTAGGCGAGTCAAATGTCCAGTTCAATTGACCAACTATTTGTTGATAGTCTGTCACAATACTTTATGTTGGGGTGATAGAAATTTTTGGGCATTTCTTTTGTGTCCTATAGTCACAAATATAGTTTAACCCCTCATAGCAATGGCACATGTGTCATGGTTCTTTTGTTGTGTTTCTGTTTCGCTGGTTCACAAGTTTACAAACTTAAGAATGTATATATTAATCATTAGTCATGTTGCATACAACACTTTGTTGCACAAGTTGCGAAGCCTGTTATTAAAAGGCAGAATTTTGCACTTGTGTGTCTTCCTGCGCAATTTATTTAGCTAAGCACAAGTTAAGATTAATGTTGGCTGTGGTTTTGAAACATGGAGAGTACAGATGTAGAACGAAACTTGTTATAATAACTTGTTAAATCCCTTTGTCATGACTTCTGGTTTTATAGCAAGTTCTTTATTATTGAAAGTTTCCAGTTCATTGAGGTTAACCTTTTATGAACAGGCTTGTGGACGGAGAGAGGAAGTGAGGTACCTATTATGGATCAGATTATATAGGGCAGAGAGAGTTGTGCAATTTTTCAGGAATTTGGAGAAAGATATACGTGTCAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACTCACACAGCAGCCTGCATATTCTACTATTTAGCTACTACACTACCTGAATCCCAAGAGGGCTACACATGGATAGGAAGTTTGAAACTGGGTGACTATGCTTATTCAAAGTTCAGAGAAATTGATATTTGGAAGCGCTACACGACATCGTTGTATTTTGCTATTGTTACTATGGCTACTGTCGGTAGGTATCTTTTTTTAAAATTTAATTAGATTTAATTCATAATGCATAATGATTTTCATTTTGTCTGGCATTAGTTATCTTCACCCAACCTATGTAGTGGGAGTGGTCTGCTTTCAGTATTTAAATAGATGGTCACTAGCATAGATAAAATTAGAGGGGTATGCGGTAATTGCTAGCCAATTGTAGAACTTAGACATATCTTTAATGTAATGGATCAATGATTCTTCCTCTACTCTTTTTGTTTGGGAAACAATTGAAAGAAACTCTGAATAAAGGATTAGATATAGTCTGAAGAAAATTGTTGGAGTAACCATTTAAACAGATTTAGTGAACATTTGGTCTATGTAGACTTAGAACCAAGTTGTATTATGATGATTTAATCCTTGTAACCAACTCCACTTGGTAAGCATAAGTCTTGAATGTTGTTATTTGTCATTAGTATTCACATAATTTTACTGATAAGAATGTCATAGTAACTCAAGTTTCAGTGCTTTGAAAAATAAAGCAGAAGAAACTCAGCCACTGTTTTCACAGACCAAATCACAACACCATCTGTTATGAAATTACTGTCCTGGTGTGGTGAGACATATCAACACAAATTGAAATGTGAACCTTAGTTCATGACACAGCTGTTACTTTGTTTGCTGCTGCAGTTTTTCTAGGTTAAATGTATGAACTGACCGTTATCAGAACCGCTTCTATGTAGATCCATGTATTATTTGCATCGATTCTGAATGATTAATTTTTTTGTCCAAATTGTATACTATCTTATCACTCTTGGAAAGTTATTCTGAATGTATCATGCTTGCAACTTTCTTTTCTTTCACAGGATATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGACATGGTTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATAAACTTCATAAGGATATCCGTGAACAAATAAAGGGCCACGTGCGTTTGCAGTTTGAAAGCAGCTACACTGACGCTGCAGTCCTTCAGGATATTCCCATTTCTATTCGATCTAAGGTAATAAGAGAAAGAAGAGGTCCTTTAGCATCATTTATGGTTGTCTATGGAAATCAACATTGTTATTGTTCCTATTTGTTTCACTTTCTACAATAGCTTGCTTTGCCACCTGCTTCCAATGCTTGTTGATATTTGTTCTCAATTTGTTCACTGGAATCATGTTTTGTTAGCTTTACTTGTAAAATTTCCCTACGTTTCATCTCTATATGTTATATCTGTCAAATTTGTCTTATGTTTCAGAAAATTCATCTTTGTTCTTTGGCGACAAATTTCTGCTGGAGTTTTAGGCCATCTTCTGTTCACATTTTCCATGAAAGCATCTGGTTTGTAGATTATTGTGTAACAGACTAATTAACTTTTGCAGATATTCGAATCATTGTATTCGCCATACATCAAAAACGTTCCTCTTTTTAGTGGATGCTCTTCAGAATTCATCAATCAGATTGTAAGTAATATTTTCCCCATTTCCTGCCATATATCAGTATGAAATGACATTAGTATTATCTATACTTTTGGTGGCTAAAGCTGGAAGCTCTCTTTTGCTTTTTGGACTTGATCTAAAACCTTAAAACTAAGGGGATCAACACTTTCTAACTGGTTTTTCTTTGACATGAAATATTTTGTTATTTAGACTCAAGGAAACAAGTATATTTTATTGACATTGATCTTTTCGTCAATCGGAAATGGCTTTCAACTTTTATGCGCCCTTGTCCATTGGATTTATTGTTTTCTACACAATTGAAATGTTCTACACTAATTTTATCCTTGAAAGAATTCAAGGGTCCGTTTGATTTGCAAAAAGTCAGGGTAATGGTTCAATGTTTGATTTAAATATGTTTGTTTGTAGGTCACAACAAATCAAACGATGAGTAACGTAACATGACAAAAATCCAAACACTTGTTACTCAACAAACTGTAGGAATAGGAGTATAGGACTGATTATTGTTCAAAGACAAACTATCTAAATAACAGTCTTTACCACTCAGTATATAATTATGCATGTGTGCATCCATATATATAACTTTTATTTTATTTTTTTACATTTTGATTATATAATGTATGTGTGTGTGTGTATACATATGTAATATTTCATATATATGTAGAAACTTTGTATTGATACTGCCACTTTTACTTTCAAGGTTGAACTTTGGATTGATAAAAAAGAACTTGGTAGTATGGGCCTCTTTTCTGCATGCTGAATAAGATTAGTGATACCTTTGTTTAACGAGAGTTTCTAGCTCGTCCGTTATCATTTCTTGCACGTGTAATGTCAGGTGATAATAATTTATGTTCTTTCATCTTTCAGGTTACTAGGCTCCATGAGGAATTCTTTCTTCCTGGGGAAGTTATAATGCAACAAGGTTACGTTGTAGATCAACTATATTTTGTCTGTGATGGTGTGCTGGTAAGATTTTATATTTCTACAACCACTTCGCTATTTTTCAATTTCTATGTTTTCCCATATTTCAGGTTTCTGATATTAGTCATAGCTTCTGAGTAACTGGAATTAGACCTACTAGTATTCATACCCTTTTATTACCCGATTCATGCCGGATAATGCTGAATTTTCTTTGCAATGTATTACCTTGTAAAAGTGTTTATGAGAATAGCATCTCTGAGATTCTTATGATTGTTCTTCATAATATCTTCCATAGGTCAACAAAGAGGAAACAACTTTAGTATGAATTTTAGAACTACTTCATTGATAGTTTTTTCACAGAAGACGAGTTTCAGTTATGTTTATTGAATGCCCAAAACTGTTTCAATGCAGGAGGAAGTAGGCATAGCTGATGATGGGTCCGAGGAAACTGTTGCACTTCTAGAGCGCAACAGCTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCACATACTGTTCGTGTTTGTGAACTGTGTAGGGTCCTGCGGATTGATAAACAATCCTTTTCAAATATCCTAGATATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTCTAGAGGTAATCATTATATTTTTTTTGACATCATCTTCCCTTTAATAGAGTATCTACCATGAGTTCAAAATGCATTATGCTACTCTCCGGTTGAACACGGCATGGATGTACTAAGTTACTCATTTTGGTATTATGCAATTTTATTATCTTCTGATCATGAGACACCTAATATCTCATATTTTACAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTCCATATTGGAAAGCTAGAATCTGATCTTGCTTTGAAGGTCAATAGAACAGCTTTTGATGGCGATATGTATCAGCTAACAAGTTTGATTCGAGCTGGAGCTGATCCCAAAAAGACAGATTATGATGGAAGATCACCTTTGGTAAGGAGCTTGAAACGTATTACTATGATATCATGTTATCAATAAATTCCATCCTCTTCATCTACGATGTGGTGATTAATTGATTATGCCACTAACAAATGCTGTTATAAAATGATTTCCTAATAAGAACCTTTGTTGTTTTTCGTATAGCATCTTGCTGCATGCAGAGGATATGAGGATATCACACTTCTTCTTATTCATGAAGGTGTAGACATCAACGTCAAAGGTAATTGTGTAACCTATATAGATATTCCTCGAGGATCAAACTTAAATTTTAGGTAATGCAAACATCACTGATGTCGTAATTTCACAGATAACTTTGGGAACACTCCGCTACTTGAAGCAGTTAAGAATGGACACGATCAGATTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTTTTAGGATAGATGATGGTGGTAGTTTTTTATGCTCAGCGGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTTATGGAATGGATGCTAACTTGAAAGATTATGACTATCGAACCCCCCTACATGTTGCTGCATCTGAAGGATTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTACCAAAGACAGGTACTGTAATTGATTCTTATTTTACATGTTTAGACTAACATTACTAATGTTTCCAAGAAGGGGAACCTTTTCATACTTGTTTTCAGGTGAAAATTTAAAATTGGCCCAATTCACTAGTGTGCTAGGTTTGTGTGCATGCATGCTCACTTGCGTGTGTCTACAACTATAATCCTGACGCCCGACGCTACTGTTTTCTAGAATTCATGCCTATAAATCATACGACAACAACAACAACCAAGTCTTATCCCACTAAGTGGAGTTGGCTATATGCCCATAAATCATATAATTATTATTTCAAATCTTGATTTGCTATCATATACTGGACATACAATTCCAAAACAGAACATCAACATGGTATTAAAAGTATTGTGTTGTGAGTTCTTAATTGTGTTTTTATAGACATTACTAGTGCTCCGACCAAGATTGTCCGTTATAGGTGAAATATGAAATGGTTCTCTTTTTCCTTCTCCATTTTTCCCCTGGTTACAAAATACTTGGCTGAACTATATATATAGAATATGCTATAGGTTTAATGTTTCTTTCCTTTCCATTCCAAAACTTATCGTTTTTTTTTTTTTTCATTTCACGCAAAACAGATGGGGAAATACTCCGCTTGATGAAGCTCGGATGAGTGGAAATAAAAATCTGATAAAGCTACTGGAAGATGCAAAATCAGCTCAATTGACAGAATTCCCTTTTCCCCAAGAAATTACAGGTACTGATATGTCGCAAAAGCCTTCTTTTTATCTTTTCATTTTTCTCTACTTTTCTTGAATCTAGATCATATATTGCTGTAAACTCAAATTTAAATCCATCTATCATTTTTTTCAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCGTTCCATCCGTGGGATCCAAAAGAACAAAGAAGAAATGGAATAGTATTATGGATTCCACACACCATTCAAGAGCTAATCAAAACAGCAGCAGAACAGATAGGATTTTCCGGTGACTCTTGTATTTTATCAGAAGATGCTGGTAAAATTATTGACGTTAGCATGATTAAGGATGATCAGAAGCTGTATTTAGTCAATGAAATGCATTAG

Protein sequence

>MS.gene064498.t1

MEFGFFRGLPENLFILDIVGQIAFLVDIVLQFFVAYRDSQTYRMVCNRTPIALRYLKSTFVIDLLGCMPWDLIYKACGRREEVRYLLWIRLYRAERVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYAYSKFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLHKDIREQIKGHVRLQFESSYTDAAVLQDIPISIRSKIFESLYSPYIKNVPLFSGCSSEFINQIVTRLHEEFFLPGEVIMQQGYVVDQLYFVCDGVLEEVGIADDGSEETVALLERNSSFGEISILCNIPQPHTVRVCELCRVLRIDKQSFSNILDIYFYDGKKVLDNLLEGKESIRGKQLESDITFHIGKLESDLALKVNRTAFDGDMYQLTSLIRAGADPKKTDYDGRSPLHLAACRGYEDITLLLIHEGVDINVKDNFGNTPLLEAVKNGHDQIASLLVREGASFRIDDGGSFLCSAVARGDSDYLKRLLSYGMDANLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVHPKKCTVFPFHPWDPKEQRRNGIVLWIPHTIQELIKTAAEQIGFSGDSCILSEDAGKIIDVSMIKDDQKLYLVNEMH