AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043494

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043494.t1 MTR_2g091130 96.082 638 25 0 1 638 1 638 0.0 1251
MS.gene043494.t1 MTR_2g091135 91.909 618 36 3 1 606 1 616 0.0 1132
MS.gene043494.t1 MTR_2g091135 92.269 595 33 2 1 583 1 594 0.0 1100
MS.gene043494.t1 MTR_4g079650 62.361 449 132 8 136 582 497 910 3.65e-173 518
MS.gene043494.t1 MTR_4g079650 62.361 449 132 8 136 582 497 910 7.69e-173 518
MS.gene043494.t1 MTR_4g079650 65.952 373 119 5 136 506 497 863 7.79e-159 478
MS.gene043494.t1 MTR_4g092900 45.687 313 127 8 265 549 128 425 4.15e-70 236
MS.gene043494.t1 MTR_4g092900 45.687 313 127 8 265 549 128 425 5.09e-70 236
MS.gene043494.t1 MTR_4g092880 40.979 327 116 10 254 549 121 401 1.91e-58 205
MS.gene043494.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 8.07e-46 172
MS.gene043494.t1 MTR_3g075040 39.313 262 118 6 297 549 207 436 3.24e-45 172
MS.gene043494.t1 MTR_4g092880 40.977 266 104 9 254 488 121 364 5.31e-44 162
MS.gene043494.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 2.03e-36 145
MS.gene043494.t1 MTR_0018s0090 58.095 105 44 0 294 398 195 299 3.70e-36 145
MS.gene043494.t1 MTR_2g018270 56.190 105 46 0 300 404 83 187 1.24e-34 138
MS.gene043494.t1 MTR_8g070660 29.268 246 155 4 293 535 90 319 2.83e-28 117
MS.gene043494.t1 MTR_6g033375 31.535 241 136 5 303 535 75 294 3.41e-28 116
MS.gene043494.t1 MTR_8g070660 44.444 108 57 1 293 397 90 197 2.83e-25 106
MS.gene043494.t1 MTR_5g069490 33.190 232 122 6 309 537 111 312 9.57e-22 97.4
MS.gene043494.t1 MTR_2g437920 30.131 229 132 6 311 535 146 350 1.19e-17 85.9
MS.gene043494.t1 MTR_6g045290 28.837 215 122 5 333 537 79 272 8.10e-15 77.8
MS.gene043494.t1 MTR_2g005820 38.298 94 57 1 303 395 202 295 4.23e-12 69.7
MS.gene043494.t1 MTR_0662s0020 32.743 113 67 4 300 406 138 247 9.50e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043494.t1 AT1G06230 59.660 471 169 8 144 602 272 733 1.28e-165 493
MS.gene043494.t1 AT1G06230 59.660 471 169 8 144 602 272 733 1.28e-165 493
MS.gene043494.t1 AT1G06230 59.660 471 169 8 144 602 272 733 1.28e-165 493
MS.gene043494.t1 AT1G06230 59.660 471 169 8 144 602 272 733 1.28e-165 493
MS.gene043494.t1 AT1G73150 49.684 316 131 6 263 559 86 392 1.34e-83 270
MS.gene043494.t1 AT1G73150 49.684 316 131 6 263 559 86 392 3.39e-83 269
MS.gene043494.t1 AT1G17790 45.397 315 135 7 287 574 122 426 1.36e-73 245
MS.gene043494.t1 AT3G27260 40.486 247 115 6 297 537 177 397 4.48e-43 166
MS.gene043494.t1 AT3G27260 40.486 247 115 6 297 537 177 397 1.14e-42 165
MS.gene043494.t1 AT3G27260 40.486 247 115 6 297 537 177 397 1.18e-42 165
MS.gene043494.t1 AT3G27260 40.323 248 116 6 296 537 127 348 1.25e-42 164
MS.gene043494.t1 AT5G14270 37.452 259 134 5 293 550 134 365 2.53e-42 163
MS.gene043494.t1 AT5G14270 37.452 259 134 5 293 550 134 365 2.53e-42 163
MS.gene043494.t1 AT5G14270 37.452 259 134 5 293 550 134 365 3.14e-42 162
MS.gene043494.t1 AT3G01770 38.983 236 114 5 297 531 130 336 7.13e-40 153
MS.gene043494.t1 AT3G01770 39.331 239 109 5 297 531 130 336 2.18e-39 154
MS.gene043494.t1 AT5G63320 35.409 257 135 6 293 544 158 388 1.85e-35 140
MS.gene043494.t1 AT5G63320 35.409 257 135 6 293 544 158 388 1.85e-35 140
MS.gene043494.t1 AT5G63320 35.409 257 135 6 293 544 158 388 2.03e-35 144
MS.gene043494.t1 AT5G65630 32.707 266 120 4 128 391 56 264 2.06e-33 135
MS.gene043494.t1 AT5G65630 55.660 106 46 1 444 549 374 478 5.03e-28 119
MS.gene043494.t1 AT5G10550 59.000 100 41 0 292 391 170 269 7.88e-32 130
MS.gene043494.t1 AT5G10550 56.250 96 42 0 454 549 378 473 6.55e-26 113
MS.gene043494.t1 AT2G34900 30.120 249 156 3 297 544 1 232 2.92e-31 123
MS.gene043494.t1 AT2G34900 29.348 276 173 4 270 544 88 342 3.31e-31 126
MS.gene043494.t1 AT5G46550 47.107 121 57 2 300 414 73 192 2.10e-28 119
MS.gene043494.t1 AT3G52280 28.163 245 155 5 297 537 95 322 1.84e-24 105
MS.gene043494.t1 AT3G52280 28.099 242 155 4 297 535 112 337 2.39e-24 105

Find 182 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCGTCTGGGTCTGATTC+AGG 0.166031 2.2:-8319784 MS.gene043494:CDS
ACATGAACATCTTGCCCTTT+AGG 0.234304 2.2:+8320839 None:intergenic
CTCCGCCGGTTGTGAATTCT+AGG 0.254094 2.2:-8321711 MS.gene043494:CDS
GGAGAAATGGGACATGGATT+TGG 0.255723 2.2:-8321109 MS.gene043494:CDS
ATGAGGTATGGCTTGAATTA+TGG 0.271934 2.2:-8320746 MS.gene043494:CDS
CTAACACCATTACACTTAAC+TGG 0.281372 2.2:+8321290 None:intergenic
TGGTGAGGTTGTTGGTGATT+AGG 0.284725 2.2:-8321465 MS.gene043494:CDS
CGAGTCAAGCTCAAGGGATT+TGG 0.299517 2.2:+8320617 None:intergenic
GTTGTTCCTCATACTCATTC+TGG 0.307616 2.2:-8321838 MS.gene043494:CDS
GATCGTTATAGGGTTGATAA+TGG 0.315135 2.2:-8321385 MS.gene043494:CDS
GAGAAATGGGACATGGATTT+GGG 0.327055 2.2:-8321108 MS.gene043494:CDS
GTGTGGATGCAGAGACTCTT+TGG 0.328188 2.2:-8320394 MS.gene043494:CDS
GAAATTCGAGTCGAGAATAA+TGG 0.332532 2.2:-8319996 MS.gene043494:CDS
AGCAGCTCAAGCAGTGATTC+TGG 0.334206 2.2:-8319954 MS.gene043494:CDS
CAACTATAACTGGTGGTTCT+TGG 0.335527 2.2:+8320173 None:intergenic
TCAACAGTTGGATAGTGTTT+TGG 0.336808 2.2:-8321755 MS.gene043494:CDS
CGCAAGCAAGAATTCCGAAT+TGG 0.349984 2.2:+8321198 None:intergenic
TTCAATTTCATCATCATGTT+GGG 0.352389 2.2:+8320430 None:intergenic
TGAGGTATGGCTTGAATTAT+GGG 0.358009 2.2:-8320745 MS.gene043494:CDS
ATGTGTCTGTGGATCGTTAT+AGG 0.361266 2.2:-8321396 MS.gene043494:CDS
GTGTTCCGAGAGAGGCTAAT+AGG 0.362707 2.2:-8321321 MS.gene043494:CDS
AGTGATAGCTCCTCATCGTC+TGG 0.364047 2.2:-8319796 MS.gene043494:CDS
CTCGGGGCATCAACTATAAC+TGG 0.373580 2.2:+8320163 None:intergenic
CATCTCACATCCGATGGACT+TGG 0.390431 2.2:-8320960 MS.gene043494:CDS
GAAGCATGGCGTTGGAGAAA+TGG 0.393841 2.2:-8321122 MS.gene043494:CDS
GGTTCCGGAGGATGGGAATT+CGG 0.396211 2.2:-8321734 MS.gene043494:CDS
ATTGTAATTTGACTCTATAA+TGG 0.399524 2.2:+8320775 None:intergenic
GCCTCTTGACATGAGGAATC+TGG 0.411079 2.2:-8320666 MS.gene043494:CDS
TACCTGCTTGTCTTTCTCTC+GGG 0.411814 2.2:+8320146 None:intergenic
CAACGGATGGCTGGGAGGTA+TGG 0.413417 2.2:-8321430 MS.gene043494:CDS
TTATCAGGATCGTTTGCCTT+CGG 0.416620 2.2:+8320566 None:intergenic
AGAGGATAAAGTTAATTCCT+TGG 0.418016 2.2:-8321863 MS.gene043494:CDS
ACATCCTCCGCAAACTCCTT+TGG 0.418265 2.2:+8320896 None:intergenic
ACCGCCACCGTCACTGTTGA+TGG 0.421112 2.2:-8321808 MS.gene043494:CDS
GAAGAGAAACAACGGATGGC+TGG 0.423094 2.2:-8321439 MS.gene043494:CDS
ATACCTGCTTGTCTTTCTCT+CGG 0.424151 2.2:+8320145 None:intergenic
GACTTCTTGTTACTCTCAGC+AGG 0.426666 2.2:+8321160 None:intergenic
GAATAGAACTGGTTCGCCTT+AGG 0.428319 2.2:+8321220 None:intergenic
CTTCAATTTCATCATCATGT+TGG 0.431836 2.2:+8320429 None:intergenic
CCCCATCCTTGCCTGTGCAA+GGG 0.434310 2.2:-8320019 MS.gene043494:CDS
ATTCCGAATTGGAATAGAAC+TGG 0.439085 2.2:+8321209 None:intergenic
CAGCATTATTCGAGGAAAGA+TGG 0.443395 2.2:-8320799 MS.gene043494:CDS
CTAGAAAGACTCCTGCTTTG+CGG 0.445924 2.2:-8320694 MS.gene043494:CDS
GAGGAGATGTGATGATAAGA+AGG 0.445935 2.2:-8321578 MS.gene043494:CDS
CCATGACATATAATCCTAAA+GGG 0.451805 2.2:-8320853 MS.gene043494:CDS
GGATAACGGGAATAATGTTT+CGG 0.452791 2.2:-8321779 MS.gene043494:CDS
GATCATTAAGAAACGAAATT+CGG 0.453860 2.2:-8320459 MS.gene043494:CDS
CATCGTCTGGGTCTGATTCA+GGG 0.454571 2.2:-8319783 MS.gene043494:CDS
ATCGTTATAGGGTTGATAAT+GGG 0.456646 2.2:-8321384 MS.gene043494:CDS
CACTCTGAGGTAGCTTCTGC+AGG 0.459504 2.2:-8321343 MS.gene043494:CDS
AAATTCGAGTCGAGAATAAT+GGG 0.460341 2.2:-8319995 MS.gene043494:CDS
AAGCATGGCGTTGGAGAAAT+GGG 0.460416 2.2:-8321121 MS.gene043494:CDS
GCCATGACATATAATCCTAA+AGG 0.461758 2.2:-8320854 MS.gene043494:CDS
AGAGGCGGTGGCCGCAAAGC+AGG 0.462424 2.2:+8320683 None:intergenic
TCCCCTTGCACAGGCAAGGA+TGG 0.467964 2.2:+8320017 None:intergenic
CCTTGAAATGGTGAGGTTGT+TGG 0.468441 2.2:-8321473 MS.gene043494:CDS
TAGTCTTGATGTTGTTCAGC+TGG 0.468758 2.2:-8321632 MS.gene043494:CDS
ATTTGTTAGAACCAGCTTTG+AGG 0.470294 2.2:-8321597 MS.gene043494:CDS
TACACGCCAGTTAAGTGTAA+TGG 0.471994 2.2:-8321296 MS.gene043494:CDS
TTGATGGGACGAAGGATAAC+GGG 0.473241 2.2:-8321792 MS.gene043494:CDS
CCCCTTGCACAGGCAAGGAT+GGG 0.474347 2.2:+8320018 None:intergenic
CCCTTTAGGATTATATGTCA+TGG 0.480279 2.2:+8320853 None:intergenic
AGGAGATGTGATGATAAGAA+GGG 0.481966 2.2:-8321577 MS.gene043494:CDS
GCTTGAGGGCGACCTTGAAA+TGG 0.483395 2.2:-8321485 MS.gene043494:CDS
ACGGTCGAAGCAAGAGATGC+GGG 0.484337 2.2:-8321521 MS.gene043494:CDS
GAACCAGTTCTATTCCAATT+CGG 0.484886 2.2:-8321212 MS.gene043494:CDS
TAATGTTTCGGTTCAACAGT+TGG 0.486868 2.2:-8321767 MS.gene043494:CDS
TGTGGATGCAGAGACTCTTT+GGG 0.487754 2.2:-8320393 MS.gene043494:CDS
CCAGTGGATGTTGAACGTCT+TGG 0.491052 2.2:-8321004 MS.gene043494:CDS
TCTAGCTTGAATAGCAAGTT+CGG 0.494718 2.2:+8320313 None:intergenic
AGTCGAGGCTGAGCAAGAAT+TGG 0.497693 2.2:-8320928 MS.gene043494:CDS
TGTGTCTGTGGATCGTTATA+GGG 0.499515 2.2:-8321395 MS.gene043494:CDS
TTAAGAATGGACTGGCTTCA+CGG 0.501932 2.2:-8321540 MS.gene043494:CDS
TTGGAGAATGGTGTTAAGAA+TGG 0.503549 2.2:-8321553 MS.gene043494:CDS
GGATGGGAATTCGGCTCCGC+CGG 0.504256 2.2:-8321725 MS.gene043494:CDS
GGGATTAAGAGGAAGCTTGA+GGG 0.506455 2.2:-8321499 MS.gene043494:CDS
CCCTTGCACAGGCAAGGATG+GGG 0.511507 2.2:+8320019 None:intergenic
GTCGAGTTTGTATCGTAGGC+AGG 0.512593 2.2:-8321665 MS.gene043494:CDS
GTCAAGCTCAAGGGATTTGG+AGG 0.514668 2.2:+8320620 None:intergenic
GCCGGTTGTGAATTCTAGGT+TGG 0.517229 2.2:-8321707 MS.gene043494:CDS
CCCATCCTTGCCTGTGCAAG+GGG 0.517558 2.2:-8320018 MS.gene043494:CDS
CATGGAAAGAAGCATGGCGT+TGG 0.520162 2.2:-8321130 MS.gene043494:CDS
ATCAACAGTGACGGTGGCGG+TGG 0.521030 2.2:+8321810 None:intergenic
GTTGATGGGACGAAGGATAA+CGG 0.523599 2.2:-8321793 MS.gene043494:CDS
AGCATTATTCGAGGAAAGAT+GGG 0.527838 2.2:-8320798 MS.gene043494:CDS
AGTGTAATGGTGTTAGAGAA+TGG 0.529484 2.2:-8321283 MS.gene043494:CDS
TGATGAAACACAAGCACGGT+TGG 0.531315 2.2:-8321039 MS.gene043494:CDS
TCCAACCTAGAATTCACAAC+CGG 0.532620 2.2:+8321706 None:intergenic
ACTCGAATTTCCCCTTGCAC+AGG 0.533983 2.2:+8320008 None:intergenic
TACAATCATGAGATGAGGTA+TGG 0.535160 2.2:-8320758 MS.gene043494:CDS
CCAACAACCTCACCATTTCA+AGG 0.535289 2.2:+8321473 None:intergenic
AAGAGAAACAACGGATGGCT+GGG 0.537737 2.2:-8321438 MS.gene043494:CDS
GCTCAAGGGATTTGGAGGGT+TGG 0.539474 2.2:+8320625 None:intergenic
GATAAGAAGGGGTTGGAGAA+TGG 0.540938 2.2:-8321565 MS.gene043494:CDS
CAAATCACCAAAGGAGTTTG+CGG 0.541456 2.2:-8320903 MS.gene043494:CDS
GATGAAACACAAGCACGGTT+GGG 0.544423 2.2:-8321038 MS.gene043494:CDS
AGGGCAAGATGTTCATGTAA+TGG 0.545167 2.2:-8320834 MS.gene043494:CDS
CCAAGACGTTCAACATCCAC+TGG 0.547510 2.2:+8321004 None:intergenic
AATTTCCCCTTGCACAGGCA+AGG 0.547685 2.2:+8320013 None:intergenic
ATTCGTCGAGTTTGTATCGT+AGG 0.549038 2.2:-8321669 MS.gene043494:CDS
TCATCACATCTCCTCAAAGC+TGG 0.550575 2.2:+8321586 None:intergenic
GTCTTTCTAGACAGAGGTGA+AGG 0.552966 2.2:+8320707 None:intergenic
TGTGAATTCTAGGTTGGATG+TGG 0.555876 2.2:-8321701 MS.gene043494:CDS
GATGTTGTTCAGCTGGAAGA+TGG 0.557828 2.2:-8321625 MS.gene043494:CDS
TTCCTCATGTCAAGAGGCGG+TGG 0.558440 2.2:+8320671 None:intergenic
ATCTCACATCCGATGGACTT+GGG 0.558638 2.2:-8320959 MS.gene043494:CDS
GGTTAGTGAAAGTGTTGAGA+AGG 0.559698 2.2:-8321254 MS.gene043494:CDS
ACCTGCTTGTCTTTCTCTCG+GGG 0.559840 2.2:+8320147 None:intergenic
TATAGGGTTGATAATGGGAG+TGG 0.560910 2.2:-8321379 MS.gene043494:CDS
TATTATCATCTCACATCCGA+TGG 0.564977 2.2:-8320966 MS.gene043494:CDS
CGGATGGCTGGGAGGTATGG+TGG 0.565095 2.2:-8321427 MS.gene043494:CDS
GAGATACAGAGATACTCGGA+GGG 0.565135 2.2:-8321919 MS.gene043494:CDS
AAAGTTTGAGCAAATACAAG+AGG 0.565822 2.2:-8320340 MS.gene043494:CDS
GTAGCACCAGAATGAGTATG+AGG 0.566136 2.2:+8321832 None:intergenic
GTAAACCTATTAGCCTCTCT+CGG 0.567513 2.2:+8321316 None:intergenic
CCGCCACCGTCACTGTTGAT+GGG 0.567667 2.2:-8321807 MS.gene043494:CDS
GCCCCGAGAGAAAGACAAGC+AGG 0.568236 2.2:-8320148 MS.gene043494:intron
GGAGCCGAATTCCCATCCTC+CGG 0.571712 2.2:+8321730 None:intergenic
ATGTGATGATAAGAAGGGGT+TGG 0.572103 2.2:-8321572 MS.gene043494:CDS
ACATGATGATGAAATTGAAG+TGG 0.573976 2.2:-8320426 MS.gene043494:CDS
CTGGGTCTGATTCAGGGTCA+CGG 0.574527 2.2:-8319777 MS.gene043494:CDS
GGGGACTGTAGCTGAAGATA+AGG 0.578014 2.2:-8321950 MS.gene043494:CDS
TTGACATGAGGAATCTGGAT+AGG 0.578459 2.2:-8320661 MS.gene043494:CDS
GTGATAGCTCCTCATCGTCT+GGG 0.578733 2.2:-8319795 MS.gene043494:CDS
TTCTGCAGGTGTTCCGAGAG+AGG 0.582364 2.2:-8321329 MS.gene043494:CDS
CCCATCAACAGTGACGGTGG+CGG 0.584798 2.2:+8321807 None:intergenic
AGCTGAACGAGTCAAGCTCA+AGG 0.587721 2.2:+8320610 None:intergenic
TGAAGTGGACATTGATAGTG+TGG 0.589368 2.2:-8320411 MS.gene043494:CDS
TGGTGTTAGAGAATGGTCAC+GGG 0.593335 2.2:-8321276 MS.gene043494:CDS
AGATGTTCATGTAATGGCGG+AGG 0.593716 2.2:-8320828 MS.gene043494:CDS
ATGGTGTTAGAGAATGGTCA+CGG 0.594200 2.2:-8321277 MS.gene043494:CDS
GGGGATTAAGAGGAAGCTTG+AGG 0.595827 2.2:-8321500 MS.gene043494:CDS
TGAGCGAATTGCCCAGCAGA+AGG 0.599288 2.2:-8320282 MS.gene043494:intron
CCTTGCACAGGCAAGGATGG+GGG 0.601431 2.2:+8320020 None:intergenic
GGTGAAGGTGCAGATATAGC+GGG 0.603194 2.2:+8320722 None:intergenic
GAAGGAGAAGAGAACACCTA+AGG 0.603536 2.2:-8321236 MS.gene043494:CDS
AGGTGAAGGTGCAGATATAG+CGG 0.604052 2.2:+8320721 None:intergenic
GATTCTGGCTCTTCATCAAG+TGG 0.609326 2.2:-8319939 MS.gene043494:intron
TAGAGAGATACAGAGATACT+CGG 0.610318 2.2:-8321923 MS.gene043494:CDS
GGCGTTGGAGAAATGGGACA+TGG 0.610803 2.2:-8321115 MS.gene043494:CDS
GGAGCTATCAGCATTATTCG+AGG 0.611908 2.2:-8320807 MS.gene043494:CDS
CACGGTCGAAGCAAGAGATG+CGG 0.611992 2.2:-8321522 MS.gene043494:CDS
TTCACAGTACCCAAGTCCAT+CGG 0.615883 2.2:+8320950 None:intergenic
GGTCGAAGCAAGAGATGCGG+GGG 0.619895 2.2:-8321519 MS.gene043494:CDS
AGTATGAGGAACAACTTCCA+AGG 0.625080 2.2:+8321846 None:intergenic
CAAATTACAATCATGAGATG+AGG 0.627329 2.2:-8320763 MS.gene043494:CDS
GCTGAACGAGTCAAGCTCAA+GGG 0.627872 2.2:+8320611 None:intergenic
TCCAGATTCCTCATGTCAAG+AGG 0.627985 2.2:+8320665 None:intergenic
TTTGAGCAAATACAAGAGGA+AGG 0.629083 2.2:-8320336 MS.gene043494:CDS
TTGGGTGTTTAATACTCCAG+TGG 0.632618 2.2:-8321020 MS.gene043494:CDS
GGCCACCGCCTCTTGACATG+AGG 0.633195 2.2:-8320673 MS.gene043494:CDS
GCAGGAGTCTTTCTAGACAG+AGG 0.633710 2.2:+8320701 None:intergenic
AAATCACATGGAAAGAAGCA+TGG 0.633912 2.2:-8321136 MS.gene043494:CDS
CGGTCGAAGCAAGAGATGCG+GGG 0.634842 2.2:-8321520 MS.gene043494:CDS
TGGTGGTTTGAATGTGTCTG+TGG 0.636743 2.2:-8321407 MS.gene043494:CDS
AACAAGAAGTCAAAATCACA+TGG 0.638541 2.2:-8321148 MS.gene043494:CDS
AGCTAAGCGCGCTCACTCTG+AGG 0.640148 2.2:-8321356 MS.gene043494:CDS
TCAAGCTCAAGGGATTTGGA+GGG 0.651277 2.2:+8320621 None:intergenic
CGTCCCATCAACAGTGACGG+TGG 0.653161 2.2:+8321804 None:intergenic
CTTCGTCCCATCAACAGTGA+CGG 0.654668 2.2:+8321801 None:intergenic
TGAATCAGACCCAGACGATG+AGG 0.655171 2.2:+8319786 None:intergenic
TTCTTGTTACTCTCAGCAGG+CGG 0.655387 2.2:+8321163 None:intergenic
ATGGCTGGGAGGTATGGTGG+TGG 0.655927 2.2:-8321424 MS.gene043494:CDS
AACCTAGAATTCACAACCGG+CGG 0.665880 2.2:+8321709 None:intergenic
GAATGGTGTTAAGAATGGAC+TGG 0.666740 2.2:-8321548 MS.gene043494:CDS
GCAAGATGTTCATGTAATGG+CGG 0.668019 2.2:-8320831 MS.gene043494:CDS
AGGGCGACCTTGAAATGGTG+AGG 0.669484 2.2:-8321480 MS.gene043494:CDS
CGTCACTGTTGATGGGACGA+AGG 0.671055 2.2:-8321800 MS.gene043494:CDS
ATCACCAAAGGAGTTTGCGG+AGG 0.671626 2.2:-8320900 MS.gene043494:CDS
AGATTCCTCATGTCAAGAGG+CGG 0.676274 2.2:+8320668 None:intergenic
GATTGAAGAGAAACAACGGA+TGG 0.679746 2.2:-8321443 MS.gene043494:CDS
GGGGCATCAACTATAACTGG+TGG 0.680239 2.2:+8320166 None:intergenic
TAAAAGAGACATGACATACG+AGG 0.688614 2.2:-8320546 MS.gene043494:CDS
GAATTGGTACAAATCACCAA+AGG 0.690101 2.2:-8320912 MS.gene043494:CDS
AGAAACAACGGATGGCTGGG+AGG 0.697772 2.2:-8321435 MS.gene043494:CDS
AAGTTGATGAAACACAAGCA+CGG 0.699310 2.2:-8321043 MS.gene043494:CDS
AGAGATACAGAGATACTCGG+AGG 0.700043 2.2:-8321920 MS.gene043494:CDS
TTAGGATTGAAGAGAAACAA+CGG 0.702409 2.2:-8321447 MS.gene043494:CDS
ACTTGGGTACTGTGAAGTCG+AGG 0.713645 2.2:-8320943 MS.gene043494:CDS
AGATACAGAGATACTCGGAG+GGG 0.714927 2.2:-8321918 MS.gene043494:CDS
GGAGATGTGATGATAAGAAG+GGG 0.717368 2.2:-8321576 MS.gene043494:CDS
GGTGTTAGAGAATGGTCACG+GGG 0.773902 2.2:-8321275 MS.gene043494:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTCAAAGTTTCAG+AGG - chr2.2:8319851-8319870 MS.gene043494:intron 20.0%
!! ACCTTGTATAATCTAAATTA+TGG + chr2.2:8321851-8321870 None:intergenic 20.0%
!! ATTGTAATTTGACTCTATAA+TGG + chr2.2:8320960-8320979 None:intergenic 20.0%
!! CCTTGTATAATCTAAATTAT+GGG + chr2.2:8321850-8321869 None:intergenic 20.0%
! CCCATAATTTAGATTATACA+AGG - chr2.2:8321847-8321866 MS.gene043494:CDS 25.0%
! GATCATTAAGAAACGAAATT+CGG - chr2.2:8321273-8321292 MS.gene043494:CDS 25.0%
! TTCAATTTCATCATCATGTT+GGG + chr2.2:8321305-8321324 None:intergenic 25.0%
! TTTGAATAAAAGTAAAAGCC+AGG + chr2.2:8321877-8321896 None:intergenic 25.0%
AAAGTTTGAGCAAATACAAG+AGG - chr2.2:8321392-8321411 MS.gene043494:CDS 30.0%
AAATTATTTGCCAAAGACAC+TGG + chr2.2:8321504-8321523 None:intergenic 30.0%
AAATTCGAGTCGAGAATAAT+GGG - chr2.2:8321737-8321756 MS.gene043494:CDS 30.0%
AACAAGAAGTCAAAATCACA+TGG - chr2.2:8320584-8320603 MS.gene043494:CDS 30.0%
AGAGGATAAAGTTAATTCCT+TGG - chr2.2:8319869-8319888 MS.gene043494:intron 30.0%
CAAATTACAATCATGAGATG+AGG - chr2.2:8320969-8320988 MS.gene043494:CDS 30.0%
CCATGACATATAATCCTAAA+GGG - chr2.2:8320879-8320898 MS.gene043494:CDS 30.0%
CTTCAATTTCATCATCATGT+TGG + chr2.2:8321306-8321325 None:intergenic 30.0%
TTAGGATTGAAGAGAAACAA+CGG - chr2.2:8320285-8320304 MS.gene043494:CDS 30.0%
! ACATGATGATGAAATTGAAG+TGG - chr2.2:8321306-8321325 MS.gene043494:CDS 30.0%
! GCTCAAACTTTTCTTATAGT+TGG + chr2.2:8321383-8321402 None:intergenic 30.0%
! TATGTCATGTCTCTTTTATC+AGG + chr2.2:8321184-8321203 None:intergenic 30.0%
!! ATCGTTATAGGGTTGATAAT+GGG - chr2.2:8320348-8320367 MS.gene043494:CDS 30.0%
!!! ACAATAGCATCTAGTTTTTC+AGG + chr2.2:8321250-8321269 None:intergenic 30.0%
AAATCACATGGAAAGAAGCA+TGG - chr2.2:8320596-8320615 MS.gene043494:CDS 35.0%
AGCATTATTCGAGGAAAGAT+GGG - chr2.2:8320934-8320953 MS.gene043494:CDS 35.0%
AGGAGATGTGATGATAAGAA+GGG - chr2.2:8320155-8320174 MS.gene043494:CDS 35.0%
ATGAGGTATGGCTTGAATTA+TGG - chr2.2:8320986-8321005 MS.gene043494:CDS 35.0%
ATTCCGAATTGGAATAGAAC+TGG + chr2.2:8320526-8320545 None:intergenic 35.0%
CAACAATAATAGTCCACAAG+CGG + chr2.2:8321615-8321634 None:intergenic 35.0%
CGTTTAATATCCAGTGTCTT+TGG - chr2.2:8321491-8321510 MS.gene043494:CDS 35.0%
CTAACACCATTACACTTAAC+TGG + chr2.2:8320445-8320464 None:intergenic 35.0%
GAAATTCGAGTCGAGAATAA+TGG - chr2.2:8321736-8321755 MS.gene043494:CDS 35.0%
GAACCAGTTCTATTCCAATT+CGG - chr2.2:8320520-8320539 MS.gene043494:CDS 35.0%
GAATTGGTACAAATCACCAA+AGG - chr2.2:8320820-8320839 MS.gene043494:CDS 35.0%
GCCATGACATATAATCCTAA+AGG - chr2.2:8320878-8320897 MS.gene043494:CDS 35.0%
TAAAAGAGACATGACATACG+AGG - chr2.2:8321186-8321205 MS.gene043494:CDS 35.0%
TAATGTTTCGGTTCAACAGT+TGG - chr2.2:8319965-8319984 MS.gene043494:CDS 35.0%
TACAATCATGAGATGAGGTA+TGG - chr2.2:8320974-8320993 MS.gene043494:CDS 35.0%
TAGAGAGATACAGAGATACT+CGG - chr2.2:8319809-8319828 MS.gene043494:intron 35.0%
TAGATTATACAAGGTCAACC+TGG - chr2.2:8321856-8321875 MS.gene043494:CDS 35.0%
TATTATCATCTCACATCCGA+TGG - chr2.2:8320766-8320785 MS.gene043494:CDS 35.0%
TGAGGTATGGCTTGAATTAT+GGG - chr2.2:8320987-8321006 MS.gene043494:CDS 35.0%
TTTGAGCAAATACAAGAGGA+AGG - chr2.2:8321396-8321415 MS.gene043494:CDS 35.0%
! AGTGTAATGGTGTTAGAGAA+TGG - chr2.2:8320449-8320468 MS.gene043494:CDS 35.0%
! ATTTGTTAGAACCAGCTTTG+AGG - chr2.2:8320135-8320154 MS.gene043494:intron 35.0%
! TCAACAGTTGGATAGTGTTT+TGG - chr2.2:8319977-8319996 MS.gene043494:CDS 35.0%
! TCTAGCTTGAATAGCAAGTT+CGG + chr2.2:8321422-8321441 None:intergenic 35.0%
! TGTCAATTTTACCTTCTGCT+GGG + chr2.2:8321464-8321483 None:intergenic 35.0%
! TTGGAGAATGGTGTTAAGAA+TGG - chr2.2:8320179-8320198 MS.gene043494:intron 35.0%
! TTGTCAATTTTACCTTCTGC+TGG + chr2.2:8321465-8321484 None:intergenic 35.0%
!! AAGTTGATGAAACACAAGCA+CGG - chr2.2:8320689-8320708 MS.gene043494:CDS 35.0%
!! CCCTTTAGGATTATATGTCA+TGG + chr2.2:8320882-8320901 None:intergenic 35.0%
!! GATCGTTATAGGGTTGATAA+TGG - chr2.2:8320347-8320366 MS.gene043494:CDS 35.0%
!! GGATAACGGGAATAATGTTT+CGG - chr2.2:8319953-8319972 MS.gene043494:CDS 35.0%
!!! ATAGCATCTAGTTTTTCAGG+TGG + chr2.2:8321247-8321266 None:intergenic 35.0%
ACATGAACATCTTGCCCTTT+AGG + chr2.2:8320896-8320915 None:intergenic 40.0%
AGGGCAAGATGTTCATGTAA+TGG - chr2.2:8320898-8320917 MS.gene043494:CDS 40.0%
AGTATGAGGAACAACTTCCA+AGG + chr2.2:8319889-8319908 None:intergenic 40.0%
ATACCTGCTTGTCTTTCTCT+CGG + chr2.2:8321590-8321609 None:intergenic 40.0%
ATGTGATGATAAGAAGGGGT+TGG - chr2.2:8320160-8320179 MS.gene043494:CDS 40.0%
ATGTGTCTGTGGATCGTTAT+AGG - chr2.2:8320336-8320355 MS.gene043494:CDS 40.0%
ATTCGTCGAGTTTGTATCGT+AGG - chr2.2:8320063-8320082 MS.gene043494:intron 40.0%
CAAATCACCAAAGGAGTTTG+CGG - chr2.2:8320829-8320848 MS.gene043494:CDS 40.0%
CAACTATAACTGGTGGTTCT+TGG + chr2.2:8321562-8321581 None:intergenic 40.0%
CAGCATTATTCGAGGAAAGA+TGG - chr2.2:8320933-8320952 MS.gene043494:CDS 40.0%
GAGAAATGGGACATGGATTT+GGG - chr2.2:8320624-8320643 MS.gene043494:CDS 40.0%
GAGGAGATGTGATGATAAGA+AGG - chr2.2:8320154-8320173 MS.gene043494:CDS 40.0%
GATTGAAGAGAAACAACGGA+TGG - chr2.2:8320289-8320308 MS.gene043494:CDS 40.0%
GCAAGATGTTCATGTAATGG+CGG - chr2.2:8320901-8320920 MS.gene043494:CDS 40.0%
GGAGATGTGATGATAAGAAG+GGG - chr2.2:8320156-8320175 MS.gene043494:CDS 40.0%
GTTGTTCCTCATACTCATTC+TGG - chr2.2:8319894-8319913 MS.gene043494:intron 40.0%
TACACGCCAGTTAAGTGTAA+TGG - chr2.2:8320436-8320455 MS.gene043494:CDS 40.0%
TCCAACCTAGAATTCACAAC+CGG + chr2.2:8320029-8320048 None:intergenic 40.0%
TGTGTCTGTGGATCGTTATA+GGG - chr2.2:8320337-8320356 MS.gene043494:CDS 40.0%
TTATCAGGATCGTTTGCCTT+CGG + chr2.2:8321169-8321188 None:intergenic 40.0%
TTGACATGAGGAATCTGGAT+AGG - chr2.2:8321071-8321090 MS.gene043494:CDS 40.0%
TTGGGTGTTTAATACTCCAG+TGG - chr2.2:8320712-8320731 MS.gene043494:CDS 40.0%
! ATGGTGTTAGAGAATGGTCA+CGG - chr2.2:8320455-8320474 MS.gene043494:CDS 40.0%
! GAATGGTGTTAAGAATGGAC+TGG - chr2.2:8320184-8320203 MS.gene043494:intron 40.0%
! GTAAACCTATTAGCCTCTCT+CGG + chr2.2:8320419-8320438 None:intergenic 40.0%
! TAGTCTTGATGTTGTTCAGC+TGG - chr2.2:8320100-8320119 MS.gene043494:intron 40.0%
! TGTGAATTCTAGGTTGGATG+TGG - chr2.2:8320031-8320050 MS.gene043494:CDS 40.0%
!! GGTTAGTGAAAGTGTTGAGA+AGG - chr2.2:8320478-8320497 MS.gene043494:CDS 40.0%
!! TATAGGGTTGATAATGGGAG+TGG - chr2.2:8320353-8320372 MS.gene043494:CDS 40.0%
!! TGAAGTGGACATTGATAGTG+TGG - chr2.2:8321321-8321340 MS.gene043494:CDS 40.0%
!! TTAAGAATGGACTGGCTTCA+CGG - chr2.2:8320192-8320211 MS.gene043494:intron 40.0%
!!! GTTGGATAGTGTTTTGGTTC+CGG - chr2.2:8319983-8320002 MS.gene043494:CDS 40.0%
AACCTAGAATTCACAACCGG+CGG + chr2.2:8320026-8320045 None:intergenic 45.0%
AAGAGAAACAACGGATGGCT+GGG - chr2.2:8320294-8320313 MS.gene043494:CDS 45.0%
AGAGATACAGAGATACTCGG+AGG - chr2.2:8319812-8319831 MS.gene043494:intron 45.0%
AGATACAGAGATACTCGGAG+GGG - chr2.2:8319814-8319833 MS.gene043494:intron 45.0%
AGATGTTCATGTAATGGCGG+AGG - chr2.2:8320904-8320923 MS.gene043494:CDS 45.0%
AGATTCCTCATGTCAAGAGG+CGG + chr2.2:8321067-8321086 None:intergenic 45.0%
CCAACAACCTCACCATTTCA+AGG + chr2.2:8320262-8320281 None:intergenic 45.0%
CCTTGAAATGGTGAGGTTGT+TGG - chr2.2:8320259-8320278 MS.gene043494:intron 45.0%
CGCAAGCAAGAATTCCGAAT+TGG + chr2.2:8320537-8320556 None:intergenic 45.0%
CTAGAAAGACTCCTGCTTTG+CGG - chr2.2:8321038-8321057 MS.gene043494:CDS 45.0%
GAAGGAGAAGAGAACACCTA+AGG - chr2.2:8320496-8320515 MS.gene043494:CDS 45.0%
GACTTCTTGTTACTCTCAGC+AGG + chr2.2:8320575-8320594 None:intergenic 45.0%
GAGAGAAAGACAAGCAGGTA+TGG - chr2.2:8321589-8321608 MS.gene043494:CDS 45.0%
GAGATACAGAGATACTCGGA+GGG - chr2.2:8319813-8319832 MS.gene043494:intron 45.0%
GATAAGAAGGGGTTGGAGAA+TGG - chr2.2:8320167-8320186 MS.gene043494:CDS 45.0%
GATGAAACACAAGCACGGTT+GGG - chr2.2:8320694-8320713 MS.gene043494:CDS 45.0%
GATGTTGTTCAGCTGGAAGA+TGG - chr2.2:8320107-8320126 MS.gene043494:intron 45.0%
GGAGAAATGGGACATGGATT+TGG - chr2.2:8320623-8320642 MS.gene043494:CDS 45.0%
GGAGCTATCAGCATTATTCG+AGG - chr2.2:8320925-8320944 MS.gene043494:CDS 45.0%
GGGATTAAGAGGAAGCTTGA+GGG - chr2.2:8320233-8320252 MS.gene043494:intron 45.0%
GTAGCACCAGAATGAGTATG+AGG + chr2.2:8319903-8319922 None:intergenic 45.0%
GTCTTTCTAGACAGAGGTGA+AGG + chr2.2:8321028-8321047 None:intergenic 45.0%
TACCTGCTTGTCTTTCTCTC+GGG + chr2.2:8321589-8321608 None:intergenic 45.0%
TCAAGCTCAAGGGATTTGGA+GGG + chr2.2:8321114-8321133 None:intergenic 45.0%
TCATCACATCTCCTCAAAGC+TGG + chr2.2:8320149-8320168 None:intergenic 45.0%
TCCAGATTCCTCATGTCAAG+AGG + chr2.2:8321070-8321089 None:intergenic 45.0%
TGATGAAACACAAGCACGGT+TGG - chr2.2:8320693-8320712 MS.gene043494:CDS 45.0%
TGGTGGTTTGAATGTGTCTG+TGG - chr2.2:8320325-8320344 MS.gene043494:CDS 45.0%
TGTGGATGCAGAGACTCTTT+GGG - chr2.2:8321339-8321358 MS.gene043494:CDS 45.0%
TTCACAGTACCCAAGTCCAT+CGG + chr2.2:8320785-8320804 None:intergenic 45.0%
TTCTTGTTACTCTCAGCAGG+CGG + chr2.2:8320572-8320591 None:intergenic 45.0%
TTGATGGGACGAAGGATAAC+GGG - chr2.2:8319940-8319959 MS.gene043494:CDS 45.0%
! AAGCATGGCGTTGGAGAAAT+GGG - chr2.2:8320611-8320630 MS.gene043494:CDS 45.0%
! AGGTGAAGGTGCAGATATAG+CGG + chr2.2:8321014-8321033 None:intergenic 45.0%
! ATCTCACATCCGATGGACTT+GGG - chr2.2:8320773-8320792 MS.gene043494:CDS 45.0%
! GTTGATGGGACGAAGGATAA+CGG - chr2.2:8319939-8319958 MS.gene043494:intron 45.0%
! TGGTGTTAGAGAATGGTCAC+GGG - chr2.2:8320456-8320475 MS.gene043494:CDS 45.0%
!! GAATAGAACTGGTTCGCCTT+AGG + chr2.2:8320515-8320534 None:intergenic 45.0%
!! GATTCTGGCTCTTCATCAAG+TGG - chr2.2:8321793-8321812 MS.gene043494:CDS 45.0%
!! TGGTGAGGTTGTTGGTGATT+AGG - chr2.2:8320267-8320286 MS.gene043494:intron 45.0%
!!! TCGTTTGCCTTCGGCTTTTT+TGG + chr2.2:8321160-8321179 None:intergenic 45.0%
AAGAGATGCGGGGGATTAAG+AGG - chr2.2:8320222-8320241 MS.gene043494:intron 50.0%
AATTTCCCCTTGCACAGGCA+AGG + chr2.2:8321722-8321741 None:intergenic 50.0%
ACATCCTCCGCAAACTCCTT+TGG + chr2.2:8320839-8320858 None:intergenic 50.0%
ACCTGCTTGTCTTTCTCTCG+GGG + chr2.2:8321588-8321607 None:intergenic 50.0%
ACTCGAATTTCCCCTTGCAC+AGG + chr2.2:8321727-8321746 None:intergenic 50.0%
AGCAGCTCAAGCAGTGATTC+TGG - chr2.2:8321778-8321797 MS.gene043494:CDS 50.0%
AGCTGAACGAGTCAAGCTCA+AGG + chr2.2:8321125-8321144 None:intergenic 50.0%
AGTCGAGGCTGAGCAAGAAT+TGG - chr2.2:8320804-8320823 MS.gene043494:CDS 50.0%
AGTGATAGCTCCTCATCGTC+TGG - chr2.2:8321936-8321955 MS.gene043494:CDS 50.0%
ATCACCAAAGGAGTTTGCGG+AGG - chr2.2:8320832-8320851 MS.gene043494:CDS 50.0%
CATCGTCTGGGTCTGATTCA+GGG - chr2.2:8321949-8321968 MS.gene043494:CDS 50.0%
CCAAGACGTTCAACATCCAC+TGG + chr2.2:8320731-8320750 None:intergenic 50.0%
CCAGTGGATGTTGAACGTCT+TGG - chr2.2:8320728-8320747 MS.gene043494:CDS 50.0%
CGAGTCAAGCTCAAGGGATT+TGG + chr2.2:8321118-8321137 None:intergenic 50.0%
CTTCGTCCCATCAACAGTGA+CGG + chr2.2:8319934-8319953 None:intergenic 50.0%
GAAGAGAAACAACGGATGGC+TGG - chr2.2:8320293-8320312 MS.gene043494:CDS 50.0%
GCAGGAGTCTTTCTAGACAG+AGG + chr2.2:8321034-8321053 None:intergenic 50.0%
GCCGGTTGTGAATTCTAGGT+TGG - chr2.2:8320025-8320044 MS.gene043494:CDS 50.0%
GCCTCTTGACATGAGGAATC+TGG - chr2.2:8321066-8321085 MS.gene043494:CDS 50.0%
GCTGAACGAGTCAAGCTCAA+GGG + chr2.2:8321124-8321143 None:intergenic 50.0%
GGGGACTGTAGCTGAAGATA+AGG - chr2.2:8319782-8319801 MS.gene043494:CDS 50.0%
GGGGATTAAGAGGAAGCTTG+AGG - chr2.2:8320232-8320251 MS.gene043494:intron 50.0%
GGTGTTAGAGAATGGTCACG+GGG - chr2.2:8320457-8320476 MS.gene043494:CDS 50.0%
GTCAAGCTCAAGGGATTTGG+AGG + chr2.2:8321115-8321134 None:intergenic 50.0%
GTCGAGTTTGTATCGTAGGC+AGG - chr2.2:8320067-8320086 MS.gene043494:intron 50.0%
GTGATAGCTCCTCATCGTCT+GGG - chr2.2:8321937-8321956 MS.gene043494:CDS 50.0%
GTGTGGATGCAGAGACTCTT+TGG - chr2.2:8321338-8321357 MS.gene043494:CDS 50.0%
GTGTTCCGAGAGAGGCTAAT+AGG - chr2.2:8320411-8320430 MS.gene043494:CDS 50.0%
TCATCGTCTGGGTCTGATTC+AGG - chr2.2:8321948-8321967 MS.gene043494:CDS 50.0%
TCCTGCTCCAAAAAAGCCGA+AGG - chr2.2:8321150-8321169 MS.gene043494:CDS 50.0%
TGAATCAGACCCAGACGATG+AGG + chr2.2:8321949-8321968 None:intergenic 50.0%
! ACTTGGGTACTGTGAAGTCG+AGG - chr2.2:8320789-8320808 MS.gene043494:CDS 50.0%
! CATCTCACATCCGATGGACT+TGG - chr2.2:8320772-8320791 MS.gene043494:CDS 50.0%
! CATGGAAAGAAGCATGGCGT+TGG - chr2.2:8320602-8320621 MS.gene043494:CDS 50.0%
! CTCGGGGCATCAACTATAAC+TGG + chr2.2:8321572-8321591 None:intergenic 50.0%
! GAAGCATGGCGTTGGAGAAA+TGG - chr2.2:8320610-8320629 MS.gene043494:CDS 50.0%
! GGGGCATCAACTATAACTGG+TGG + chr2.2:8321569-8321588 None:intergenic 50.0%
! GGTGAAGGTGCAGATATAGC+GGG + chr2.2:8321013-8321032 None:intergenic 50.0%
!!! AGTGTTTTGGTTCCGGAGGA+TGG - chr2.2:8319990-8320009 MS.gene043494:CDS 50.0%
!!! GGATAGTGTTTTGGTTCCGG+AGG - chr2.2:8319986-8320005 MS.gene043494:CDS 50.0%
!!! GTGTTTTGGTTCCGGAGGAT+GGG - chr2.2:8319991-8320010 MS.gene043494:CDS 50.0%
ACGGTCGAAGCAAGAGATGC+GGG - chr2.2:8320211-8320230 MS.gene043494:intron 55.0%
AGAAACAACGGATGGCTGGG+AGG - chr2.2:8320297-8320316 MS.gene043494:CDS 55.0%
AGGGCGACCTTGAAATGGTG+AGG - chr2.2:8320252-8320271 MS.gene043494:intron 55.0%
CACGGTCGAAGCAAGAGATG+CGG - chr2.2:8320210-8320229 MS.gene043494:intron 55.0%
CTGGGTCTGATTCAGGGTCA+CGG - chr2.2:8321955-8321974 MS.gene043494:CDS 55.0%
GCTCAAGGGATTTGGAGGGT+TGG + chr2.2:8321110-8321129 None:intergenic 55.0%
GCTTGAGGGCGACCTTGAAA+TGG - chr2.2:8320247-8320266 MS.gene043494:intron 55.0%
GGTTCCGGAGGATGGGAATT+CGG - chr2.2:8319998-8320017 MS.gene043494:CDS 55.0%
TGAGCGAATTGCCCAGCAGA+AGG - chr2.2:8321450-8321469 MS.gene043494:CDS 55.0%
TTCCTCATGTCAAGAGGCGG+TGG + chr2.2:8321064-8321083 None:intergenic 55.0%
TTCTGCAGGTGTTCCGAGAG+AGG - chr2.2:8320403-8320422 MS.gene043494:CDS 55.0%
! CGTCACTGTTGATGGGACGA+AGG - chr2.2:8319932-8319951 MS.gene043494:intron 55.0%
! CTCCGCCGGTTGTGAATTCT+AGG - chr2.2:8320021-8320040 MS.gene043494:CDS 55.0%
! GGCGTTGGAGAAATGGGACA+TGG - chr2.2:8320617-8320636 MS.gene043494:CDS 55.0%
!! CACTCTGAGGTAGCTTCTGC+AGG - chr2.2:8320389-8320408 MS.gene043494:CDS 55.0%
!! CTGGTGGTTCTTGGCTCTAC+AGG + chr2.2:8321553-8321572 None:intergenic 55.0%
!!! GCCTTCGGCTTTTTTGGAGC+AGG + chr2.2:8321154-8321173 None:intergenic 55.0%
ACCGCCACCGTCACTGTTGA+TGG - chr2.2:8319924-8319943 MS.gene043494:intron 60.0%
AGCTAAGCGCGCTCACTCTG+AGG - chr2.2:8320376-8320395 MS.gene043494:CDS 60.0%
CAACGGATGGCTGGGAGGTA+TGG - chr2.2:8320302-8320321 MS.gene043494:CDS 60.0%
CAAGCAGGTATGGCCGCTTG+TGG - chr2.2:8321599-8321618 MS.gene043494:CDS 60.0%
CCCATCAACAGTGACGGTGG+CGG + chr2.2:8319928-8319947 None:intergenic 60.0%
CCCATCCTTGCCTGTGCAAG+GGG - chr2.2:8321714-8321733 MS.gene043494:CDS 60.0%
CCCCATCCTTGCCTGTGCAA+GGG - chr2.2:8321713-8321732 MS.gene043494:CDS 60.0%
CCCCTTGCACAGGCAAGGAT+GGG + chr2.2:8321717-8321736 None:intergenic 60.0%
CCCTTGCACAGGCAAGGATG+GGG + chr2.2:8321716-8321735 None:intergenic 60.0%
CCGCCACCGTCACTGTTGAT+GGG - chr2.2:8319925-8319944 MS.gene043494:intron 60.0%
CCTTGCACAGGCAAGGATGG+GGG + chr2.2:8321715-8321734 None:intergenic 60.0%
CGGTCGAAGCAAGAGATGCG+GGG - chr2.2:8320212-8320231 MS.gene043494:intron 60.0%
CGTCCCATCAACAGTGACGG+TGG + chr2.2:8319931-8319950 None:intergenic 60.0%
GCCCCGAGAGAAAGACAAGC+AGG - chr2.2:8321584-8321603 MS.gene043494:CDS 60.0%
GGAGCCGAATTCCCATCCTC+CGG + chr2.2:8320005-8320024 None:intergenic 60.0%
GGTCGAAGCAAGAGATGCGG+GGG - chr2.2:8320213-8320232 MS.gene043494:intron 60.0%
TCCCCTTGCACAGGCAAGGA+TGG + chr2.2:8321718-8321737 None:intergenic 60.0%
! ATCAACAGTGACGGTGGCGG+TGG + chr2.2:8319925-8319944 None:intergenic 60.0%
! ATGGCTGGGAGGTATGGTGG+TGG - chr2.2:8320308-8320327 MS.gene043494:CDS 60.0%
CCCCCATCCTTGCCTGTGCA+AGG - chr2.2:8321712-8321731 MS.gene043494:CDS 65.0%
GGATGGGAATTCGGCTCCGC+CGG - chr2.2:8320007-8320026 MS.gene043494:CDS 65.0%
GGCCACCGCCTCTTGACATG+AGG - chr2.2:8321059-8321078 MS.gene043494:CDS 65.0%
! CGGATGGCTGGGAGGTATGG+TGG - chr2.2:8320305-8320324 MS.gene043494:CDS 65.0%
AGAGGCGGTGGCCGCAAAGC+AGG + chr2.2:8321052-8321071 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 8319774 8321980 8319774 ID=MS.gene043494
chr2.2 mRNA 8319774 8321980 8319774 ID=MS.gene043494.t1;Parent=MS.gene043494
chr2.2 exon 8320283 8321980 8320283 ID=MS.gene043494.t1.exon1;Parent=MS.gene043494.t1
chr2.2 CDS 8320283 8321980 8320283 ID=cds.MS.gene043494.t1;Parent=MS.gene043494.t1
chr2.2 exon 8320149 8320197 8320149 ID=MS.gene043494.t1.exon2;Parent=MS.gene043494.t1
chr2.2 CDS 8320149 8320197 8320149 ID=cds.MS.gene043494.t1;Parent=MS.gene043494.t1
chr2.2 exon 8319940 8320056 8319940 ID=MS.gene043494.t1.exon3;Parent=MS.gene043494.t1
chr2.2 CDS 8319940 8320056 8319940 ID=cds.MS.gene043494.t1;Parent=MS.gene043494.t1
chr2.2 exon 8319774 8319826 8319774 ID=MS.gene043494.t1.exon4;Parent=MS.gene043494.t1
chr2.2 CDS 8319774 8319826 8319774 ID=cds.MS.gene043494.t1;Parent=MS.gene043494.t1
Gene Sequence

>MS.gene043494

ATGGATTCGGGGACTGTAGCTGAAGATAAGGTAGTTAGAGAGATACAGAGATACTCGGAGGGGAAAGTTTACACGAGAAAAAATTTCAAAGTTTCAGAGGATAAAGTTAATTCCTTGGAAGTTGTTCCTCATACTCATTCTGGTGCTACCACCGCCACCGTCACTGTTGATGGGACGAAGGATAACGGGAATAATGTTTCGGTTCAACAGTTGGATAGTGTTTTGGTTCCGGAGGATGGGAATTCGGCTCCGCCGGTTGTGAATTCTAGGTTGGATGTGGTTTCTGAAGATTCGTCGAGTTTGTATCGTAGGCAGGATGAACATTTTAGTCTTGATGTTGTTCAGCTGGAAGATGGTAATGATTTGTTAGAACCAGCTTTGAGGAGATGTGATGATAAGAAGGGGTTGGAGAATGGTGTTAAGAATGGACTGGCTTCACGGTCGAAGCAAGAGATGCGGGGGATTAAGAGGAAGCTTGAGGGCGACCTTGAAATGGTGAGGTTGTTGGTGATTAGGATTGAAGAGAAACAACGGATGGCTGGGAGGTATGGTGGTGGTTTGAATGTGTCTGTGGATCGTTATAGGGTTGATAATGGGAGTGGAGCTAAGCGCGCTCACTCTGAGGTAGCTTCTGCAGGTGTTCCGAGAGAGGCTAATAGGTTTACACGCCAGTTAAGTGTAATGGTGTTAGAGAATGGTCACGGGGTTAGTGAAAGTGTTGAGAAGGAGAAGAGAACACCTAAGGCGAACCAGTTCTATTCCAATTCGGAATTCTTGCTTGCGAAAGATAAGTTTCCGCCTGCTGAGAGTAACAAGAAGTCAAAATCACATGGAAAGAAGCATGGCGTTGGAGAAATGGGACATGGATTTGGGATAGTATCGAAGTATTTTAAGAACTGTAGCTCATTGCTTGAAAAGTTGATGAAACACAAGCACGGTTGGGTGTTTAATACTCCAGTGGATGTTGAACGTCTTGGTTTGCATGATTATTTTATTATCATCTCACATCCGATGGACTTGGGTACTGTGAAGTCGAGGCTGAGCAAGAATTGGTACAAATCACCAAAGGAGTTTGCGGAGGATGTGAGACTTACTTTTCGTAATGCCATGACATATAATCCTAAAGGGCAAGATGTTCATGTAATGGCGGAGGAGCTATCAGCATTATTCGAGGAAAGATGGGCCATTATAGAGTCAAATTACAATCATGAGATGAGGTATGGCTTGAATTATGGGCCCGCTATATCTGCACCTTCACCTCTGTCTAGAAAGACTCCTGCTTTGCGGCCACCGCCTCTTGACATGAGGAATCTGGATAGGTCAGAATCAATAACCAACCCTCCAAATCCCTTGAGCTTGACTCGTTCAGCTCGAACTCCTGCTCCAAAAAAGCCGAAGGCAAACGATCCTGATAAAAGAGACATGACATACGAGGAAAAGCAAAAACTTAGCACACATCTTCAGAATCTACCACCTGAAAAACTAGATGCTATTGTACAGATCATTAAGAAACGAAATTCGGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCAGAGACTCTTTGGGAGCTTGATAGATATGTTACCAACTATAAGAAAAGTTTGAGCAAATACAAGAGGAAGGCCGAACTTGCTATTCAAGCTAGAGCAGAAGCTGAGCGAATTGCCCAGCAGAAGGTAAAATTGACAATTTCAACGTTTAATATCCAGTGTCTTTGGCAAATAATTTTTACTCATTGAATTTATTTCATGCTTCCTGTAGAGCCAAGAACCACCAGTTATAGTTGATGCCCCGAGAGAAAGACAAGCAGGTATGGCCGCTTGTGGACTATTATTGTTGATTTCTTATCATCATTCATCAATTAAATTAATTGAAATATTTTGTCTGCTTGTTTCTGAGCAGATGAAAGAAATGCTCCCCCATCCTTGCCTGTGCAAGGGGAAATTCGAGTCGAGAATAATGGGAGTAAGACAAGTAGCTCAAGCAGCTCAAGCAGTGATTCTGGCTCTTCATCAAGTGGTATATTAAATAATTATTTAACAGATATCTGTCCCATAATTTAGATTATACAAGGTCAACCTGGCTTTTACTTTTATTCAAATTTAATGTTTGATAATAATGTGCTTTTGCAGATTCTGATAGTGATAGCTCCTCATCGTCTGGGTCTGATTCAGGGTCACGGTGA
Protein sequence

>MS.gene043494.t1

MDSGTVAEDKVVREIQRYSEGKVYTRKNFKVSEDKVNSLEVVPHTHSGATTATVTVDGTKDNGNNVSVQQLDSVLVPEDGNSAPPVVNSRLDVVSEDSSSLYRRQDEHFSLDVVQLEDGNDLLEPALRRCDDKKGLENGVKNGLASRSKQEMRGIKRKLEGDLEMVRLLVIRIEEKQRMAGRYGGGLNVSVDRYRVDNGSGAKRAHSEVASAGVPREANRFTRQLSVMVLENGHGVSESVEKEKRTPKANQFYSNSEFLLAKDKFPPAESNKKSKSHGKKHGVGEMGHGFGIVSKYFKNCSSLLEKLMKHKHGWVFNTPVDVERLGLHDYFIIISHPMDLGTVKSRLSKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMRYGLNYGPAISAPSPLSRKTPALRPPPLDMRNLDRSESITNPPNPLSLTRSARTPAPKKPKANDPDKRDMTYEEKQKLSTHLQNLPPEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKYKRKAELAIQARAEAERIAQQKSQEPPVIVDAPRERQADERNAPPSLPVQGEIRVENNGSKTSSSSSSSSDSGSSSSDSDSDSSSSSGSDSGSR