Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97648.t1 | XP_013455839.1 | 98.2 | 993 | 15 | 1 | 1 | 993 | 42 | 1031 | 0.00E+00 | 1839.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97648.t1 | Q9LXN4 | 72.1 | 914 | 235 | 9 | 11 | 919 | 48 | 946 | 0.0e+00 | 1197.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97648.t1 | A0A072UVK7 | 98.2 | 993 | 15 | 1 | 1 | 993 | 42 | 1031 | 0.0e+00 | 1839.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057314 | MS.gene97648 | 0.802703 | 4.95E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene043495 | MS.gene97648 | PPI |
MS.gene31387 | MS.gene97648 | PPI |
MS.gene97648 | MS.gene24268 | PPI |
MS.gene97648 | MS.gene90689 | PPI |
MS.gene97648 | MS.gene028827 | PPI |
MS.gene97648 | MS.gene043494 | PPI |
MS.gene80820 | MS.gene97648 | PPI |
MS.gene97648 | MS.gene29637 | PPI |
MS.gene97648 | MS.gene028826 | PPI |
MS.gene97648 | MS.gene55174 | PPI |
MS.gene27302 | MS.gene97648 | PPI |
MS.gene54865 | MS.gene97648 | PPI |
MS.gene31388 | MS.gene97648 | PPI |
MS.gene97648 | MS.gene80691 | PPI |
MS.gene54866 | MS.gene97648 | PPI |
MS.gene97648 | MS.gene26972 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97648.t1 | MTR_4g053675 | 98.187 | 993 | 15 | 1 | 1 | 993 | 42 | 1031 | 0.0 | 2015 |
MS.gene97648.t1 | MTR_2g086140 | 80.213 | 940 | 171 | 7 | 8 | 941 | 45 | 975 | 0.0 | 1541 |
MS.gene97648.t1 | MTR_8g093540 | 28.446 | 341 | 176 | 8 | 31 | 335 | 66 | 374 | 9.08e-32 | 132 |
MS.gene97648.t1 | MTR_3g106080 | 31.757 | 148 | 84 | 1 | 22 | 169 | 496 | 626 | 1.12e-15 | 82.0 |
MS.gene97648.t1 | MTR_4g095058 | 23.948 | 309 | 181 | 7 | 21 | 329 | 320 | 574 | 6.08e-14 | 76.3 |
MS.gene97648.t1 | MTR_4g095058 | 23.948 | 309 | 181 | 7 | 21 | 329 | 322 | 576 | 6.26e-14 | 76.3 |
MS.gene97648.t1 | MTR_5g016350 | 23.226 | 310 | 184 | 8 | 20 | 329 | 326 | 581 | 9.42e-14 | 75.9 |
MS.gene97648.t1 | MTR_5g016350 | 23.226 | 310 | 184 | 8 | 20 | 329 | 262 | 517 | 1.35e-13 | 75.1 |
MS.gene97648.t1 | MTR_1g072140 | 31.325 | 166 | 96 | 3 | 20 | 185 | 18 | 165 | 5.20e-13 | 71.6 |
MS.gene97648.t1 | MTR_1g072140 | 29.861 | 144 | 84 | 1 | 21 | 164 | 61 | 187 | 5.83e-12 | 68.6 |
MS.gene97648.t1 | MTR_2g034500 | 30.216 | 139 | 77 | 2 | 22 | 157 | 234 | 355 | 1.98e-12 | 72.4 |
MS.gene97648.t1 | MTR_1g087120 | 33.094 | 139 | 73 | 3 | 22 | 157 | 319 | 440 | 5.79e-12 | 70.9 |
MS.gene97648.t1 | MTR_5g016370 | 22.903 | 310 | 185 | 8 | 20 | 329 | 338 | 593 | 5.97e-11 | 66.6 |
MS.gene97648.t1 | MTR_4g119620 | 30.201 | 149 | 79 | 2 | 28 | 176 | 77 | 200 | 6.56e-11 | 65.5 |
MS.gene97648.t1 | MTR_4g105700 | 28.662 | 157 | 104 | 3 | 28 | 183 | 446 | 595 | 6.89e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97648.t1 | AT3G44530 | 72.101 | 914 | 235 | 9 | 11 | 919 | 48 | 946 | 0.0 | 1320 |
MS.gene97648.t1 | AT3G44530 | 69.198 | 948 | 238 | 11 | 11 | 919 | 48 | 980 | 0.0 | 1308 |
MS.gene97648.t1 | AT3G44530 | 70.803 | 822 | 220 | 9 | 103 | 919 | 2 | 808 | 0.0 | 1155 |
MS.gene97648.t1 | AT3G44530 | 67.489 | 689 | 204 | 9 | 236 | 919 | 1 | 674 | 0.0 | 893 |
MS.gene97648.t1 | AT5G64630 | 29.143 | 350 | 188 | 9 | 23 | 339 | 58 | 380 | 1.99e-34 | 139 |
MS.gene97648.t1 | AT5G64630 | 28.571 | 350 | 190 | 8 | 23 | 339 | 58 | 380 | 8.72e-34 | 135 |
MS.gene97648.t1 | AT5G64630 | 28.779 | 344 | 180 | 10 | 29 | 339 | 10 | 321 | 5.72e-32 | 130 |
MS.gene97648.t1 | AT5G25150 | 32.353 | 136 | 75 | 1 | 22 | 157 | 495 | 613 | 7.01e-14 | 76.6 |
MS.gene97648.t1 | AT5G25150 | 32.353 | 136 | 75 | 1 | 22 | 157 | 495 | 613 | 7.80e-14 | 76.3 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 47 | 175 | 8.34e-13 | 73.6 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 47 | 175 | 9.41e-13 | 73.2 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 47 | 175 | 9.41e-13 | 73.2 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 229 | 357 | 1.14e-12 | 73.2 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 229 | 357 | 1.16e-12 | 73.2 |
MS.gene97648.t1 | AT2G47410 | 30.822 | 146 | 79 | 3 | 22 | 162 | 228 | 356 | 1.18e-12 | 73.2 |
MS.gene97648.t1 | AT4G02730 | 28.144 | 167 | 101 | 3 | 20 | 185 | 34 | 182 | 2.78e-12 | 69.7 |
MS.gene97648.t1 | AT5G67320 | 31.973 | 147 | 74 | 2 | 20 | 157 | 439 | 568 | 5.67e-12 | 70.1 |
MS.gene97648.t1 | AT5G49430 | 30.201 | 149 | 84 | 3 | 22 | 167 | 238 | 369 | 1.86e-11 | 69.3 |
MS.gene97648.t1 | AT5G49430 | 30.201 | 149 | 84 | 3 | 22 | 167 | 238 | 369 | 1.86e-11 | 69.3 |
MS.gene97648.t1 | AT3G49660 | 29.651 | 172 | 87 | 4 | 28 | 193 | 70 | 213 | 2.41e-11 | 66.6 |
MS.gene97648.t1 | AT5G08390 | 26.012 | 173 | 102 | 3 | 28 | 174 | 15 | 187 | 3.15e-11 | 68.2 |
Find 267 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAAGGATCACTTTATTTA+TGG | 0.129245 | 4.4:-48893067 | MS.gene97648:CDS |
CTTTGCAGATATAACTTTAA+TGG | 0.177954 | 4.4:+48891442 | None:intergenic |
GTTCAGCAGGAAAATATTTC+TGG | 0.195639 | 4.4:-48894121 | MS.gene97648:CDS |
GCAACCCTACGGGATCATTT+TGG | 0.196194 | 4.4:-48896396 | MS.gene97648:CDS |
AGCTCAGTTGGCCTCTTCTT+TGG | 0.207933 | 4.4:-48890529 | MS.gene97648:CDS |
TTGAACTTGACCACAATAAT+TGG | 0.212571 | 4.4:+48895189 | None:intergenic |
GGACCATCACTCTTCTTATT+AGG | 0.233543 | 4.4:+48894268 | None:intergenic |
GTTGGCCTCTTCTTTGGCTT+TGG | 0.239980 | 4.4:-48890523 | MS.gene97648:CDS |
TTGAATCTTTGCAGGGAATA+AGG | 0.243111 | 4.4:-48889015 | MS.gene97648:intron |
GGGCAGAATGCCTTGGCTTC+TGG | 0.250053 | 4.4:+48895268 | None:intergenic |
TGGTTCTCCTCTTGTTGTTT+TGG | 0.252310 | 4.4:-48891408 | MS.gene97648:CDS |
GAGAAGGTTCCGGCCTCTTC+TGG | 0.260380 | 4.4:-48893908 | MS.gene97648:CDS |
ACAGGAACTCCAACTGCTTC+TGG | 0.265909 | 4.4:+48894142 | None:intergenic |
TGGTGAACTGGCTGCTTTGC+AGG | 0.267347 | 4.4:-48891270 | MS.gene97648:CDS |
GCATTTGCACAACTGTTCTA+AGG | 0.270517 | 4.4:-48895663 | MS.gene97648:CDS |
TTTGCCAGCTCTTGGAGTTT+GGG | 0.272667 | 4.4:-48891305 | MS.gene97648:CDS |
TTGGCCTCTTCTTTGGCTTT+GGG | 0.274910 | 4.4:-48890522 | MS.gene97648:CDS |
CACATTGGCCAGTGGTAGTT+TGG | 0.276268 | 4.4:-48895719 | MS.gene97648:CDS |
AGTATCAGCAATTTCGTATT+CGG | 0.290589 | 4.4:+48888901 | None:intergenic |
AAAAGGATCACTTTATTTAT+GGG | 0.295941 | 4.4:-48893066 | MS.gene97648:CDS |
CTCATGCCGCTCTTTCAATT+AGG | 0.301988 | 4.4:-48893832 | MS.gene97648:CDS |
ATGATAAAACAGTCATTATC+TGG | 0.307219 | 4.4:-48895573 | MS.gene97648:CDS |
TAAAGTAGGTGGATCTTAAT+TGG | 0.320161 | 4.4:-48895756 | MS.gene97648:intron |
TTCATCACAGTCTACAAATA+TGG | 0.321824 | 4.4:+48893115 | None:intergenic |
CCTAGTCCAACCTGGCTTGC+GGG | 0.328585 | 4.4:+48891226 | None:intergenic |
CATTACTCATATTCCATATA+TGG | 0.333463 | 4.4:+48895686 | None:intergenic |
TCCCAACTGCTCAACATTGA+TGG | 0.338707 | 4.4:+48893874 | None:intergenic |
CTTTGGTCTGATAGGATATC+AGG | 0.345362 | 4.4:-48893662 | MS.gene97648:CDS |
CCATACAATGTTATTGCAAT+TGG | 0.352122 | 4.4:-48895063 | MS.gene97648:CDS |
CATGGAAGGTATATTGCATC+TGG | 0.358585 | 4.4:-48896345 | MS.gene97648:CDS |
TAGGCATTGGCGATATTCAT+TGG | 0.360995 | 4.4:+48890494 | None:intergenic |
TCATTTACGTATGTTCCTAA+TGG | 0.361413 | 4.4:+48888809 | None:intergenic |
TGCCTGCCGGATGGTCCAAT+GGG | 0.364491 | 4.4:-48895116 | MS.gene97648:CDS |
CTGCCTGCCGGATGGTCCAA+TGG | 0.367361 | 4.4:-48895117 | MS.gene97648:CDS |
CTGGAAGAATGTCTTCTATA+AGG | 0.370730 | 4.4:+48888981 | None:intergenic |
TGCATCTGGGTCGGACGATC+AGG | 0.372181 | 4.4:-48896331 | MS.gene97648:CDS |
AACATCATCTGATAAGAGTT+TGG | 0.372312 | 4.4:-48890008 | MS.gene97648:CDS |
GGCCTTGCTTCTAAACAAAT+AGG | 0.373501 | 4.4:+48893776 | None:intergenic |
GAGAAACCAACGAGTCTTGC+AGG | 0.376986 | 4.4:+48893021 | None:intergenic |
CAACTCCATTGTTACCCCTT+TGG | 0.377129 | 4.4:+48894050 | None:intergenic |
TGGCTCTTTATTTCCAGTCT+TGG | 0.390889 | 4.4:+48895089 | None:intergenic |
TTCCAGCCATGGCATCAAAT+AGG | 0.391006 | 4.4:-48888964 | MS.gene97648:CDS |
GAGACTGCTCAACGAATTCA+TGG | 0.391577 | 4.4:-48888933 | MS.gene97648:CDS |
CTAATAGAGAGTGGTCCATT+AGG | 0.392622 | 4.4:-48888824 | MS.gene97648:CDS |
TGGACAACACCATCCATATA+TGG | 0.393575 | 4.4:-48895699 | MS.gene97648:CDS |
TGCACATGATCAAATTGTTC+AGG | 0.396758 | 4.4:-48888696 | MS.gene97648:CDS |
TCCAATGGGGCTTCCAAGAC+TGG | 0.399767 | 4.4:-48895102 | MS.gene97648:CDS |
GGGCCACTCTAGCTTGGTTA+AGG | 0.402923 | 4.4:-48895641 | MS.gene97648:CDS |
CCAATTGCAATAACATTGTA+TGG | 0.407012 | 4.4:+48895063 | None:intergenic |
GCTTGGTTAAGGGCGTTGCT+TGG | 0.411526 | 4.4:-48895630 | MS.gene97648:CDS |
TGAATTCGTTGAGCAGTCTC+TGG | 0.412571 | 4.4:+48888936 | None:intergenic |
CATGAGAGGAAGCCTGGTTC+AGG | 0.413791 | 4.4:-48896297 | MS.gene97648:CDS |
CTTGGTTAAGGGCGTTGCTT+GGG | 0.415567 | 4.4:-48895629 | MS.gene97648:CDS |
GAGTCTCAAGTGTTGGTTAA+GGG | 0.415688 | 4.4:-48891357 | MS.gene97648:CDS |
CCTTGTGATTGAGAAGGTTC+CGG | 0.415801 | 4.4:-48893918 | MS.gene97648:CDS |
CTCTATTCAAAGTGGTGAAC+TGG | 0.417934 | 4.4:-48891282 | MS.gene97648:CDS |
TGTTATTGCAATTGGAAGTC+AGG | 0.418050 | 4.4:-48895055 | MS.gene97648:CDS |
AGGCATTGGCGATATTCATT+GGG | 0.419090 | 4.4:+48890495 | None:intergenic |
CAAGAACCTCATTCCTGATC+TGG | 0.419160 | 4.4:+48888668 | None:intergenic |
AGTTTCCTTGGACCTCCAAC+TGG | 0.422515 | 4.4:-48890043 | MS.gene97648:CDS |
CGACAGGGAAGCCAAGTTCT+TGG | 0.423209 | 4.4:+48894086 | None:intergenic |
GGCGTTGCTTGGGATCCTAT+TGG | 0.424316 | 4.4:-48895619 | MS.gene97648:CDS |
TTTAAATCTGAATTTCTGCC+AGG | 0.427338 | 4.4:+48893983 | None:intergenic |
TTGGCGGTTGGTTGTGAGGA+TGG | 0.429685 | 4.4:-48893605 | MS.gene97648:CDS |
TTCCTATTTGATGCCATGGC+TGG | 0.431604 | 4.4:+48888962 | None:intergenic |
GACTTTCCTATTTGATGCCA+TGG | 0.433487 | 4.4:+48888958 | None:intergenic |
CTCAAACACTTTGGTCTGAT+AGG | 0.435314 | 4.4:-48893670 | MS.gene97648:CDS |
CTTCTTGCTTGGTGTTTGCT+TGG | 0.435321 | 4.4:+48894393 | None:intergenic |
CATGCTGTTAATGACATTGC+AGG | 0.440016 | 4.4:-48893746 | MS.gene97648:CDS |
TTGGGTCTGTCAACTGTGTA+AGG | 0.442920 | 4.4:-48896377 | MS.gene97648:CDS |
AATAGTCTTACAAGCACAAC+AGG | 0.446613 | 4.4:+48889977 | None:intergenic |
CATTCCCCTCTCTCGAGGAC+AGG | 0.447521 | 4.4:+48895246 | None:intergenic |
CTATATTCTCTTTGCTTCAC+AGG | 0.448882 | 4.4:+48894193 | None:intergenic |
GACAGGGAAGCCAAGTTCTT+GGG | 0.449576 | 4.4:+48894087 | None:intergenic |
AGCTCATCTGCTAAAGATAC+AGG | 0.452038 | 4.4:-48892981 | MS.gene97648:intron |
AAATATTTGGCCCGCAAGCC+AGG | 0.452423 | 4.4:-48891236 | MS.gene97648:CDS |
TCCAGTCTTGGAAGCCCCAT+TGG | 0.453698 | 4.4:+48895101 | None:intergenic |
TTGGGAAATTCGACGACTAC+TGG | 0.454060 | 4.4:-48893857 | MS.gene97648:CDS |
TTAGCAACCACCTTCTTGCT+TGG | 0.458208 | 4.4:+48894382 | None:intergenic |
GGTTCAGGTACCACAGAATT+CGG | 0.460753 | 4.4:-48896282 | MS.gene97648:CDS |
AGCCACCGGATATTGAAAAC+TGG | 0.461185 | 4.4:-48896251 | MS.gene97648:CDS |
TTTAATGCATCACCACCAAC+GGG | 0.461912 | 4.4:+48894247 | None:intergenic |
GGCCACTCTAGCTTGGTTAA+GGG | 0.463838 | 4.4:-48895640 | MS.gene97648:CDS |
CTATCAGACCAAAGTGTTTG+AGG | 0.465507 | 4.4:+48893671 | None:intergenic |
AGGATCGAACTATAACTGTT+TGG | 0.466858 | 4.4:-48895035 | MS.gene97648:CDS |
CTGTTGCTGGTGACTAGAAA+AGG | 0.466988 | 4.4:-48893083 | MS.gene97648:CDS |
CCGGCCTCTTCTGGCAGAGA+TGG | 0.467613 | 4.4:-48893899 | MS.gene97648:CDS |
GAAGTCTGTGAGAGTTTCCT+TGG | 0.469315 | 4.4:-48890055 | MS.gene97648:CDS |
AACCGATCCATCCAAGGAAC+AGG | 0.470436 | 4.4:+48894567 | None:intergenic |
CTCACAGGACAGATGGTCAC+TGG | 0.471964 | 4.4:-48895528 | MS.gene97648:CDS |
TGTTCAGGATACACCAGATC+AGG | 0.473006 | 4.4:-48888681 | MS.gene97648:CDS |
GCAGTTCAATCCCAAGAACT+TGG | 0.474529 | 4.4:-48894097 | MS.gene97648:CDS |
TTGTAGACTGTGATGAAAGT+TGG | 0.474659 | 4.4:-48893109 | MS.gene97648:CDS |
AGTGCAGACACGTGCTCACT+TGG | 0.474971 | 4.4:-48890553 | MS.gene97648:CDS |
TCTAAGGGGCCACTCTAGCT+TGG | 0.477426 | 4.4:-48895647 | MS.gene97648:CDS |
TACCTATTTGTTTAGAAGCA+AGG | 0.477895 | 4.4:-48893778 | MS.gene97648:CDS |
TCTGCAAAGCTATCAAAGTC+TGG | 0.478840 | 4.4:-48891428 | MS.gene97648:CDS |
GGAAGCCCCATTGGACCATC+CGG | 0.479663 | 4.4:+48895110 | None:intergenic |
ACCTAAGGTACTTGTTCTTA+CGG | 0.479901 | 4.4:+48894012 | None:intergenic |
TCAGATTTAAAAGAACGCTC+AGG | 0.480310 | 4.4:-48893971 | MS.gene97648:CDS |
ATAATTCTCCTCCTTCCATC+AGG | 0.480332 | 4.4:+48894166 | None:intergenic |
AACCATCAATGTTGAGCAGT+TGG | 0.482044 | 4.4:-48893876 | MS.gene97648:CDS |
TGCTCACTTGGAAGCTCAGT+TGG | 0.482764 | 4.4:-48890541 | MS.gene97648:CDS |
ACCACTCTCTATTAGATTAG+TGG | 0.484333 | 4.4:+48888832 | None:intergenic |
TTATCTGGAAAACTAGTGAT+TGG | 0.485573 | 4.4:-48895558 | MS.gene97648:CDS |
GCCCCATTGGACCATCCGGC+AGG | 0.486063 | 4.4:+48895114 | None:intergenic |
ACCATCAATGTTGAGCAGTT+GGG | 0.486119 | 4.4:-48893875 | MS.gene97648:CDS |
CCTTGGACCTCCAACTGGCA+TGG | 0.489223 | 4.4:-48890038 | MS.gene97648:CDS |
AATTTCTGTTTCCCTCATCA+TGG | 0.490984 | 4.4:+48893709 | None:intergenic |
AGTTGGAGTTCCTGTTCAGC+AGG | 0.491571 | 4.4:-48894134 | MS.gene97648:CDS |
CGTGTCTTCTGAGCACCAAA+GGG | 0.491642 | 4.4:-48894065 | MS.gene97648:CDS |
TCTTCAGCCATGCCAGTTGG+AGG | 0.491804 | 4.4:+48890031 | None:intergenic |
CTGGCCAATGTGGAATCATC+AGG | 0.494501 | 4.4:+48895730 | None:intergenic |
AGCAATGCCTACCATGATGA+TGG | 0.496254 | 4.4:-48893147 | MS.gene97648:CDS |
TCTGCCCCTGTCCTCGAGAG+AGG | 0.497072 | 4.4:-48895252 | MS.gene97648:CDS |
CTTGCTATAAAAGATCCAAT+AGG | 0.497902 | 4.4:+48895604 | None:intergenic |
TGAAAGTTGGAAGCTGTTGC+TGG | 0.500343 | 4.4:-48893096 | MS.gene97648:CDS |
GAGCTGGCAAAATTTGATGC+AGG | 0.500810 | 4.4:+48891317 | None:intergenic |
TCAACCTTCTTCAGACGACT+TGG | 0.501073 | 4.4:-48895333 | MS.gene97648:CDS |
CCCGCAAGCCAGGTTGGACT+AGG | 0.501584 | 4.4:-48891226 | MS.gene97648:intron |
TGCCTGTTCCTTGGATGGAT+CGG | 0.501589 | 4.4:-48894569 | MS.gene97648:CDS |
AACGCTCAGGGGTTACCGCT+AGG | 0.502120 | 4.4:-48893958 | MS.gene97648:CDS |
GTCTGTCAACTGTGTAAGGT+GGG | 0.504299 | 4.4:-48896373 | MS.gene97648:CDS |
ATTAGGATAGTTGACAAGAA+AGG | 0.504322 | 4.4:-48893815 | MS.gene97648:CDS |
TGAGTCTCAAGTGTTGGTTA+AGG | 0.504728 | 4.4:-48891358 | MS.gene97648:CDS |
CAGATTTAAAAGAACGCTCA+GGG | 0.505055 | 4.4:-48893970 | MS.gene97648:CDS |
TTAATTCATGAGAGGAAGCC+TGG | 0.506476 | 4.4:-48896303 | MS.gene97648:CDS |
GTTTCTTCAGCCATGCCAGT+TGG | 0.515748 | 4.4:+48890028 | None:intergenic |
GCTTCTAGCAATAACTGTGC+TGG | 0.516182 | 4.4:+48894424 | None:intergenic |
AGGACAGGGGCAGAATGCCT+TGG | 0.518488 | 4.4:+48895261 | None:intergenic |
CATTTGCACAACTGTTCTAA+GGG | 0.519738 | 4.4:-48895662 | MS.gene97648:CDS |
AGAATTATTCCAGAAGCAGT+TGG | 0.520758 | 4.4:-48894151 | MS.gene97648:CDS |
CAACGAGTCTTGCAGGAGAC+AGG | 0.521281 | 4.4:+48893028 | None:intergenic |
AGAGGCTTCTTGCAACCCTA+CGG | 0.521890 | 4.4:-48896407 | MS.gene97648:CDS |
AAAGTGTTGTGGATTTATCC+TGG | 0.522076 | 4.4:-48894963 | MS.gene97648:intron |
TTGACATGAGTCTCAAGTGT+TGG | 0.523601 | 4.4:-48891364 | MS.gene97648:CDS |
TATATTCTCTTTGCTTCACA+GGG | 0.524792 | 4.4:+48894194 | None:intergenic |
TCTTGAAACAGGAGCCCTGA+TGG | 0.531488 | 4.4:-48894604 | MS.gene97648:intron |
TCGTGTCTTCTGAGCACCAA+AGG | 0.532080 | 4.4:-48894066 | MS.gene97648:CDS |
ATGCTGTATATTGAATCCTC+AGG | 0.532196 | 4.4:+48888782 | None:intergenic |
CATATATGGAATATGAGTAA+TGG | 0.534441 | 4.4:-48895685 | MS.gene97648:CDS |
ACCGTAAGAACAAGTACCTT+AGG | 0.536470 | 4.4:-48894013 | MS.gene97648:CDS |
ACCTAGTCCAACCTGGCTTG+CGG | 0.538398 | 4.4:+48891225 | None:intergenic |
TGATATAGAATGACTGATGA+CGG | 0.538666 | 4.4:-48890576 | MS.gene97648:intron |
ATTCCCCTCTCTCGAGGACA+GGG | 0.540099 | 4.4:+48895247 | None:intergenic |
TGGGAAATGCATCCATGATG+AGG | 0.540434 | 4.4:-48893721 | MS.gene97648:CDS |
GTTTAATGCATCACCACCAA+CGG | 0.540968 | 4.4:+48894246 | None:intergenic |
CTGCCCCTGTCCTCGAGAGA+GGG | 0.541522 | 4.4:-48895251 | MS.gene97648:CDS |
CGCCCTTAACCAAGCTAGAG+TGG | 0.542102 | 4.4:+48895638 | None:intergenic |
CCTATGTACGATTTCTTGCA+AGG | 0.542737 | 4.4:-48890467 | MS.gene97648:intron |
CCATCCAAGTCGTCTGAAGA+AGG | 0.543050 | 4.4:+48895329 | None:intergenic |
CCTTCTTCAGACGACTTGGA+TGG | 0.544713 | 4.4:-48895329 | MS.gene97648:CDS |
CAGAAATTGCTTGCACTAGA+GGG | 0.545773 | 4.4:-48893694 | MS.gene97648:CDS |
TCTGCCAGGTGCTCCACCTA+AGG | 0.546653 | 4.4:+48893997 | None:intergenic |
AATTCTGTGGTACCTGAACC+AGG | 0.546984 | 4.4:+48896285 | None:intergenic |
CTCTCTATTAGATTAGTGGC+AGG | 0.548851 | 4.4:+48888836 | None:intergenic |
ATTTGGCCCGCAAGCCAGGT+TGG | 0.549243 | 4.4:-48891232 | MS.gene97648:CDS |
AGAAGATTTACACAAAGTGC+GGG | 0.550691 | 4.4:-48893175 | MS.gene97648:intron |
GAGGCTTCTTGCAACCCTAC+GGG | 0.550771 | 4.4:-48896406 | MS.gene97648:CDS |
ACAGAAATTGCTTGCACTAG+AGG | 0.552254 | 4.4:-48893695 | MS.gene97648:CDS |
CTGTCTCCTGCAAGACTCGT+TGG | 0.552687 | 4.4:-48893027 | MS.gene97648:CDS |
GAAATGAAGTCTCTGCCTGC+CGG | 0.554698 | 4.4:-48895129 | MS.gene97648:CDS |
CTGTCCTCGAGAGAGGGGAA+TGG | 0.555734 | 4.4:-48895245 | MS.gene97648:CDS |
TCATTAACAGCATGTTCTCT+CGG | 0.557271 | 4.4:+48893755 | None:intergenic |
GAGCTGAAGAGAAGTCGTTA+CGG | 0.557597 | 4.4:-48894484 | MS.gene97648:CDS |
AGAAGACATTCTTCCAGCCA+TGG | 0.557772 | 4.4:-48888975 | MS.gene97648:CDS |
AGAGCCCAAACTCCAAGAGC+TGG | 0.558972 | 4.4:+48891301 | None:intergenic |
CCATCTCTGCCAGAAGAGGC+CGG | 0.559147 | 4.4:+48893899 | None:intergenic |
ATCTGATAAGAGTTTGGCAT+GGG | 0.560191 | 4.4:-48890002 | MS.gene97648:CDS |
GGTGTTGTCCAAACTACCAC+TGG | 0.560714 | 4.4:+48895711 | None:intergenic |
TGAGAGCCTTGTGATTGAGA+AGG | 0.561272 | 4.4:-48893924 | MS.gene97648:CDS |
ATTCGGTAGTGGAGAGCCAC+CGG | 0.561465 | 4.4:-48896265 | MS.gene97648:CDS |
ACGCTCAGGGGTTACCGCTA+GGG | 0.565882 | 4.4:-48893957 | MS.gene97648:CDS |
GAAGATGTCTTGAGTAACAC+TGG | 0.566233 | 4.4:+48888860 | None:intergenic |
AGAGAATATAGACGTCCTGA+TGG | 0.566622 | 4.4:-48894181 | MS.gene97648:CDS |
TTGTGAGGATGGATGCCTGC+AGG | 0.567992 | 4.4:-48893594 | MS.gene97648:intron |
GGTCTGTCAACTGTGTAAGG+TGG | 0.568847 | 4.4:-48896374 | MS.gene97648:CDS |
CGAGTTGCCAAAACAACAAG+AGG | 0.570729 | 4.4:+48891401 | None:intergenic |
CTCATGGTTTCCAGAAGCCA+AGG | 0.573823 | 4.4:-48895278 | MS.gene97648:CDS |
CTAGAGGGCCTCAAACACTT+TGG | 0.574402 | 4.4:-48893679 | MS.gene97648:CDS |
GTGATTGGAGTCTTGCTCAC+AGG | 0.575006 | 4.4:-48895543 | MS.gene97648:CDS |
TAAGGTGGGCTAAGCATGGA+AGG | 0.576123 | 4.4:-48896359 | MS.gene97648:CDS |
CTTGAAACAGGAGCCCTGAT+GGG | 0.576934 | 4.4:-48894603 | MS.gene97648:intron |
AACTATCCTAATTGAAAGAG+CGG | 0.577324 | 4.4:+48893826 | None:intergenic |
AAGGTATATTGCATCTGGGT+CGG | 0.577707 | 4.4:-48896340 | MS.gene97648:CDS |
AATATAGACGTCCTGATGGA+AGG | 0.577756 | 4.4:-48894177 | MS.gene97648:CDS |
GTATCTTTAGCAGATGAGCT+AGG | 0.578133 | 4.4:+48892984 | None:intergenic |
TTCTTATTAGGTTCAACTTG+AGG | 0.578528 | 4.4:+48894280 | None:intergenic |
TGTGTAAGGTGGGCTAAGCA+TGG | 0.578561 | 4.4:-48896363 | MS.gene97648:CDS |
AGTCTTGCTCACAGGACAGA+TGG | 0.579756 | 4.4:-48895535 | MS.gene97648:CDS |
GAACCTAATAAGAAGAGTGA+TGG | 0.581485 | 4.4:-48894271 | MS.gene97648:CDS |
TGGTGCTCAGAAGACACGAC+AGG | 0.582497 | 4.4:+48894070 | None:intergenic |
AAGAGTGATGGTCCCGTTGG+TGG | 0.582685 | 4.4:-48894259 | MS.gene97648:CDS |
AGTACCTTAGGTGGAGCACC+TGG | 0.583432 | 4.4:-48894001 | MS.gene97648:CDS |
GAGAGGGCACACTGCAGATG+TGG | 0.583609 | 4.4:-48896211 | MS.gene97648:intron |
TGAAGTCTCTGCCTGCCGGA+TGG | 0.585315 | 4.4:-48895125 | MS.gene97648:CDS |
GGCTGCAGATCCCATCATCA+TGG | 0.586799 | 4.4:+48893136 | None:intergenic |
CCATGCCAGTTGGAGGTCCA+AGG | 0.586990 | 4.4:+48890038 | None:intergenic |
GGTACCACAGAATTCGGTAG+TGG | 0.587847 | 4.4:-48896276 | MS.gene97648:CDS |
AAGAAGAGTGATGGTCCCGT+TGG | 0.588017 | 4.4:-48894262 | MS.gene97648:CDS |
GAGAAGATTTACACAAAGTG+CGG | 0.588750 | 4.4:-48893176 | MS.gene97648:intron |
ACTCATATTCCATATATGGA+TGG | 0.589286 | 4.4:+48895690 | None:intergenic |
GAAATCGTACATAGGACAGT+AGG | 0.590872 | 4.4:+48890475 | None:intergenic |
GCAATGCCTACCATGATGAT+GGG | 0.595359 | 4.4:-48893146 | MS.gene97648:CDS |
CAAGCAAACACCAAGCAAGA+AGG | 0.596117 | 4.4:-48894392 | MS.gene97648:CDS |
TGCCCCTGTCCTCGAGAGAG+GGG | 0.596242 | 4.4:-48895250 | MS.gene97648:CDS |
AGCTGGCAAAATTTGATGCA+GGG | 0.597004 | 4.4:+48891318 | None:intergenic |
CAAACTACCACTGGCCAATG+TGG | 0.600599 | 4.4:+48895720 | None:intergenic |
TCACAGGACAGATGGTCACT+GGG | 0.601079 | 4.4:-48895527 | MS.gene97648:CDS |
AGTCGTTACGGTGATGTGAG+AGG | 0.601594 | 4.4:-48894472 | MS.gene97648:CDS |
AAAGTCGCAATGACTTTGAG+AGG | 0.603804 | 4.4:-48896228 | MS.gene97648:CDS |
CCGGAACCTTCTCAATCACA+AGG | 0.610220 | 4.4:+48893918 | None:intergenic |
ATGCTGTTAATGACATTGCA+GGG | 0.610409 | 4.4:-48893745 | MS.gene97648:CDS |
GCAGATCCCATCATCATGGT+AGG | 0.610628 | 4.4:+48893140 | None:intergenic |
GTACATAGGACAGTAGGCAT+TGG | 0.611246 | 4.4:+48890481 | None:intergenic |
ACACAATGCTCCAATTATTG+TGG | 0.611428 | 4.4:-48895199 | MS.gene97648:CDS |
GGTTCCATCTCTGCCAGAAG+AGG | 0.613002 | 4.4:+48893895 | None:intergenic |
CATCTGATAAGAGTTTGGCA+TGG | 0.614995 | 4.4:-48890003 | MS.gene97648:CDS |
TGTAGCAACCGATCCATCCA+AGG | 0.615103 | 4.4:+48894561 | None:intergenic |
TGTTAATGACATTGCAGGGG+TGG | 0.616105 | 4.4:-48893741 | MS.gene97648:CDS |
GGGAAATGCATCCATGATGA+GGG | 0.616515 | 4.4:-48893720 | MS.gene97648:CDS |
ACAAAATTACAACCTCTGCA+CGG | 0.617275 | 4.4:-48894225 | MS.gene97648:CDS |
GGCATTGGCGATATTCATTG+GGG | 0.618030 | 4.4:+48890496 | None:intergenic |
CCTTGCAAGAAATCGTACAT+AGG | 0.619664 | 4.4:+48890467 | None:intergenic |
AATACATACCTAGTCCAACC+TGG | 0.620825 | 4.4:+48891218 | None:intergenic |
GTTAATGACATTGCAGGGGT+GGG | 0.621176 | 4.4:-48893740 | MS.gene97648:CDS |
GCAATAACATTGTATGGCTG+TGG | 0.621422 | 4.4:+48895069 | None:intergenic |
ATGGAAGGTATATTGCATCT+GGG | 0.621600 | 4.4:-48896344 | MS.gene97648:CDS |
GTCTCCTGATGATTCCACAT+TGG | 0.623387 | 4.4:-48895734 | MS.gene97648:CDS |
TGAGGATTCAATATACAGCA+TGG | 0.623908 | 4.4:-48888780 | MS.gene97648:CDS |
AGACCCAAAATGATCCCGTA+GGG | 0.626036 | 4.4:+48896392 | None:intergenic |
CAGACCATTCCCCTCTCTCG+AGG | 0.627604 | 4.4:+48895241 | None:intergenic |
GAGCACCAAAGGGGTAACAA+TGG | 0.629150 | 4.4:-48894055 | MS.gene97648:CDS |
GTAAGAACAAGTACCTTAGG+TGG | 0.632052 | 4.4:-48894010 | MS.gene97648:CDS |
AGGATAGTTGACAAGAAAGG+TGG | 0.632560 | 4.4:-48893812 | MS.gene97648:CDS |
GATACACCAGATCAGGAATG+AGG | 0.633367 | 4.4:-48888674 | None:intergenic |
GGATCCCAAAGCCAAAGAAG+AGG | 0.637100 | 4.4:+48890518 | None:intergenic |
GCAAACACCAAGCAAGAAGG+TGG | 0.637877 | 4.4:-48894389 | MS.gene97648:CDS |
GCCACTAATCTAATAGAGAG+TGG | 0.641123 | 4.4:-48888833 | MS.gene97648:CDS |
CTCTCCACTACCGAATTCTG+TGG | 0.645556 | 4.4:+48896272 | None:intergenic |
CAGACCCAAAATGATCCCGT+AGG | 0.647447 | 4.4:+48896391 | None:intergenic |
TTCCCCTCTCTCGAGGACAG+GGG | 0.655046 | 4.4:+48895248 | None:intergenic |
AAGTCGCAATGACTTTGAGA+GGG | 0.657167 | 4.4:-48896227 | MS.gene97648:CDS |
AGGTGATATTAATTCATGAG+AGG | 0.657420 | 4.4:-48896311 | MS.gene97648:CDS |
GCCTGCCGGATGGTCCAATG+GGG | 0.657772 | 4.4:-48895115 | MS.gene97648:CDS |
ATAGACGTCCTGATGGAAGG+AGG | 0.658288 | 4.4:-48894174 | MS.gene97648:CDS |
GATGATTCCACATTGGCCAG+TGG | 0.661400 | 4.4:-48895727 | MS.gene97648:CDS |
AGTTTGGGCTCTATTCAAAG+TGG | 0.661830 | 4.4:-48891290 | MS.gene97648:CDS |
ACAGCATGGACAATAACACT+CGG | 0.663001 | 4.4:-48888766 | MS.gene97648:CDS |
ATTTGCACAACTGTTCTAAG+GGG | 0.663592 | 4.4:-48895661 | MS.gene97648:CDS |
GGTGCTCAGAAGACACGACA+GGG | 0.668430 | 4.4:+48894071 | None:intergenic |
GCTTATGTTGATACACGTGT+TGG | 0.671428 | 4.4:-48894334 | MS.gene97648:CDS |
AGTTGACAAGAAAGGTGGCG+AGG | 0.675145 | 4.4:-48893807 | MS.gene97648:CDS |
AGGGCTAGAAATCCGTGCAG+AGG | 0.675302 | 4.4:+48894213 | None:intergenic |
CAGCATGGACAATAACACTC+GGG | 0.683679 | 4.4:-48888765 | MS.gene97648:CDS |
CATGGACAATAACACTCGGG+TGG | 0.702532 | 4.4:-48888762 | MS.gene97648:CDS |
ATACGTAAATGACACTCCTG+AGG | 0.702986 | 4.4:-48888798 | MS.gene97648:CDS |
GCATTGGCGATATTCATTGG+GGG | 0.705351 | 4.4:+48890497 | None:intergenic |
GTGGTGATAAAATGACCACA+TGG | 0.706319 | 4.4:+48895303 | None:intergenic |
AGATTTAAAAGAACGCTCAG+GGG | 0.707981 | 4.4:-48893969 | MS.gene97648:CDS |
CTTCTGGAAACCATGAGTAG+TGG | 0.708208 | 4.4:+48895284 | None:intergenic |
CGACTTGGATGGTCTCCATG+TGG | 0.712770 | 4.4:-48895318 | MS.gene97648:CDS |
CAAATGAAGAGTCTTCTCAG+AGG | 0.719314 | 4.4:-48896425 | MS.gene97648:CDS |
GTGTCTTCTGAGCACCAAAG+GGG | 0.723995 | 4.4:-48894064 | MS.gene97648:CDS |
CTCAGAAATCGTAGCCCTAG+CGG | 0.727943 | 4.4:+48893943 | None:intergenic |
TGCTGTTAATGACATTGCAG+GGG | 0.744856 | 4.4:-48893744 | MS.gene97648:CDS |
AAAGCATTTATCTAACACGG+AGG | 0.769582 | 4.4:-48895151 | MS.gene97648:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 48888676 | 48896484 | 48888676 | ID=MS.gene97648 |
chr4.4 | mRNA | 48888676 | 48896484 | 48888676 | ID=MS.gene97648.t1;Parent=MS.gene97648 |
chr4.4 | exon | 48896212 | 48896484 | 48896212 | ID=MS.gene97648.t1.exon1;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48896212 | 48896484 | 48896212 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48895519 | 48895770 | 48895519 | ID=MS.gene97648.t1.exon2;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48895519 | 48895770 | 48895519 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48894964 | 48895361 | 48894964 | ID=MS.gene97648.t1.exon3;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48894964 | 48895361 | 48894964 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48893595 | 48894615 | 48893595 | ID=MS.gene97648.t1.exon4;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48893595 | 48894615 | 48893595 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48892982 | 48893192 | 48892982 | ID=MS.gene97648.t1.exon5;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48892982 | 48893192 | 48892982 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48891227 | 48891467 | 48891227 | ID=MS.gene97648.t1.exon6;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48891227 | 48891467 | 48891227 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48890468 | 48890590 | 48890468 | ID=MS.gene97648.t1.exon7;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48890468 | 48890590 | 48890468 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48889988 | 48890102 | 48889988 | ID=MS.gene97648.t1.exon8;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48889988 | 48890102 | 48889988 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
chr4.4 | exon | 48888676 | 48889023 | 48888676 | ID=MS.gene97648.t1.exon9;Parent=MS.gene97648.t1 |
chr4.4 | CDS | 48888676 | 48889023 | 48888676 | ID=cds.MS.gene97648.t1;Parent=MS.gene97648.t1 |
Gene Sequence |
Protein sequence |