AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043783

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043783.t1 MTR_2g460810 97.751 489 11 0 1 489 1 489 0.0 949
MS.gene043783.t1 MTR_0004s0650 54.886 481 187 4 24 487 31 498 0.0 526
MS.gene043783.t1 MTR_4g099450 55.236 487 207 4 3 489 2 477 2.90e-174 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043783.t1 AT2G13100 72.541 488 129 2 4 489 2 486 0.0 714
MS.gene043783.t1 AT2G13100 72.541 488 129 2 4 489 2 486 0.0 714
MS.gene043783.t1 AT3G47420 53.740 508 203 5 1 487 5 501 0.0 518
MS.gene043783.t1 AT3G47420 53.740 508 203 5 1 487 5 501 0.0 518
MS.gene043783.t1 AT3G47420 53.740 508 203 5 1 487 5 501 0.0 518
MS.gene043783.t1 AT1G30560 51.527 491 210 4 16 489 10 489 6.90e-178 509
MS.gene043783.t1 AT4G17550 50.854 527 217 3 1 486 1 526 1.45e-174 502
MS.gene043783.t1 AT4G25220 53.348 463 197 4 30 489 36 482 7.73e-172 493
MS.gene043783.t1 AT2G13100 73.092 249 64 1 241 489 89 334 2.08e-124 367
MS.gene043783.t1 AT2G13100 70.732 82 24 0 4 85 2 83 4.58e-32 125
MS.gene043783.t1 AT2G13100 77.982 218 48 0 272 489 83 300 3.65e-117 347
MS.gene043783.t1 AT2G13100 67.045 88 29 0 4 91 2 89 9.98e-33 127

Find 134 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAGAGAGAAGCTTTC+AGG 0.190851 2.1:-40066008 MS.gene043783:CDS
TTACTCCATTGGCATGTATT+TGG 0.217319 2.1:-40067302 MS.gene043783:CDS
ATCACCTTGATGTTTCTTTC+TGG 0.224719 2.1:-40066287 MS.gene043783:CDS
TGTTGTGAATCCGGTGGATA+TGG 0.256289 2.1:-40066906 MS.gene043783:CDS
TTGAGGTTGTTTCTTGTGTT+TGG 0.258719 2.1:-40067253 MS.gene043783:CDS
CCTTGTGTTGTTGCAGTTGT+TGG 0.271567 2.1:-40067109 MS.gene043783:CDS
CAGTTGTTGGGAATTGGCTT+GGG 0.271735 2.1:-40067096 MS.gene043783:CDS
TAGTATTGTTAAAAGTGTTC+TGG 0.280648 2.1:-40067431 MS.gene043783:CDS
TGATAATAAGAACACATATT+TGG 0.281967 2.1:+40067497 None:intergenic
TTTGATATTGGAGGAGTTCT+AGG 0.290006 2.1:-40066440 MS.gene043783:CDS
GGTTATTGCTTCGGGTGTTT+TGG 0.290922 2.1:-40067005 MS.gene043783:CDS
CTCATTTCAATTTCCATTCC+AGG 0.291532 2.1:+40066872 None:intergenic
ATCAAAGAGGGGATTGATAA+TGG 0.292694 2.1:-40067071 MS.gene043783:CDS
GTTCCTCGAGTTCCATTAAA+AGG 0.293143 2.1:+40067364 None:intergenic
TCAAATTCTTCGTCTGCTAT+TGG 0.299829 2.1:-40066770 MS.gene043783:CDS
TTGCTTACACTTTCTTGTAT+TGG 0.304564 2.1:-40066679 MS.gene043783:CDS
CATTGGTTCGGTTATTGCTT+CGG 0.314100 2.1:-40067014 MS.gene043783:CDS
CTTTCAACAATATTTGATAT+TGG 0.314253 2.1:-40066452 MS.gene043783:CDS
TGTGGAGTGTTTCAGTCAAT+TGG 0.315612 2.1:-40067136 MS.gene043783:CDS
ACCTGTGTGCCTTATGTAGA+AGG 0.333717 2.1:+40066652 None:intergenic
TGAGGTTGTTTCTTGTGTTT+GGG 0.335721 2.1:-40067252 MS.gene043783:CDS
TGGTTTGATGTTCATGTGTT+GGG 0.336491 2.1:-40067184 MS.gene043783:CDS
GTGTTGGTTGCAGCGGTTGC+TGG 0.336822 2.1:-40066506 MS.gene043783:intron
GCTTTAGTGGTGGGAATTCT+CGG 0.342732 2.1:-40066199 MS.gene043783:CDS
AACCAATTCAACCCTTGATT+CGG 0.343395 2.1:-40067395 MS.gene043783:CDS
GGTTCTGTTGGAGCTGCTCT+TGG 0.349690 2.1:-40066140 MS.gene043783:CDS
CACATATTTGGTGGAATAGT+AGG 0.350389 2.1:+40067509 None:intergenic
GGGGATTGATAATGGGGATA+TGG 0.364452 2.1:-40067063 MS.gene043783:CDS
ACCAATTCAACCCTTGATTC+GGG 0.365317 2.1:-40067394 MS.gene043783:CDS
TCAAAGAGGGGATTGATAAT+GGG 0.369497 2.1:-40067070 MS.gene043783:CDS
GGTTGGTCGTTTGTGGTGCC+TGG 0.375096 2.1:-40066971 MS.gene043783:CDS
ACCCGAATCAAGGGTTGAAT+TGG 0.376330 2.1:+40067393 None:intergenic
CTCGGTACGCAGGGCTTTAG+TGG 0.382958 2.1:-40066212 MS.gene043783:CDS
GCAGTTGTTGGGAATTGGCT+TGG 0.384000 2.1:-40067097 MS.gene043783:CDS
GTTTCTTGTGTTTGGGATGG+TGG 0.396297 2.1:-40067245 MS.gene043783:CDS
TTGTTGCAGTTGTTGGGAAT+TGG 0.403901 2.1:-40067102 MS.gene043783:CDS
TCCATTGGCATGTATTTGGC+TGG 0.414022 2.1:-40067298 MS.gene043783:CDS
TGGCTGGTCATGTTGGTGAT+AGG 0.414837 2.1:-40067282 MS.gene043783:CDS
ATTGGTTCGGTTATTGCTTC+GGG 0.416295 2.1:-40067013 MS.gene043783:CDS
AGTATTGTTAAAAGTGTTCT+GGG 0.416808 2.1:-40067430 MS.gene043783:CDS
CTTGTGTTGTTGCAGTTGTT+GGG 0.419466 2.1:-40067108 MS.gene043783:CDS
GAATTTGAAATCGAACTATC+AGG 0.420709 2.1:+40066785 None:intergenic
ACGAAAATGATCAAAATTCC+AGG 0.423719 2.1:+40066953 None:intergenic
ACCTCGGTTGGGAATATCAT+TGG 0.423859 2.1:-40067031 MS.gene043783:CDS
TCTGTTTCTTGTTGTGAATC+CGG 0.429267 2.1:-40066915 MS.gene043783:CDS
ATTGGTTACCCTTCTACATA+AGG 0.433887 2.1:-40066661 MS.gene043783:CDS
CTGGTTTGATGTTCATGTGT+TGG 0.438300 2.1:-40067185 MS.gene043783:CDS
TGGATGGGGTTGGTCGTTTG+TGG 0.439831 2.1:-40066978 MS.gene043783:CDS
TTTCTTACTTCTTACTCCAT+TGG 0.444854 2.1:-40067313 MS.gene043783:CDS
ACTGTTACTGCAATCATTGA+TGG 0.445070 2.1:-40066167 MS.gene043783:CDS
AATCTATCTCACAAAACTGC+TGG 0.446010 2.1:-40066479 MS.gene043783:CDS
GTGGAGTGTTTCAGTCAATT+GGG 0.451035 2.1:-40067135 MS.gene043783:CDS
AGATAAGAGAGAAGCTTTCA+GGG 0.451142 2.1:-40066007 MS.gene043783:CDS
GGTTGGGAATATCATTGGTT+CGG 0.456341 2.1:-40067026 MS.gene043783:CDS
GTTGTGAATCCGGTGGATAT+GGG 0.458906 2.1:-40066905 MS.gene043783:CDS
GTCGGTGTTCAGATTGTTTG+TGG 0.462172 2.1:-40067154 MS.gene043783:CDS
GATATGGGGTTTGCGAGTCC+TGG 0.465019 2.1:-40066890 MS.gene043783:CDS
TGGAATTCGCATACCTCGGT+TGG 0.474948 2.1:-40067043 MS.gene043783:CDS
ATGCTTCCTTTCATGCATCT+AGG 0.475318 2.1:-40067462 MS.gene043783:CDS
GGCTGCCGATCTCGGTACGC+AGG 0.479417 2.1:-40066222 MS.gene043783:CDS
TGGAGCTAGGCTCAAACTCT+TGG 0.480620 2.1:+40067573 None:intergenic
CTTTAGTGGTGGGAATTCTC+GGG 0.483451 2.1:-40066198 MS.gene043783:CDS
ATTGGCTTGGGGAATCAAAG+AGG 0.486300 2.1:-40067084 MS.gene043783:CDS
ACTGCTGTGGCTGCCGATCT+CGG 0.489455 2.1:-40066230 MS.gene043783:CDS
TGGTGGGAATTCTCGGGCAC+TGG 0.495438 2.1:-40066192 MS.gene043783:CDS
AAGGCGGCCAACCCGAATCA+AGG 0.499130 2.1:+40067383 None:intergenic
TTTCTTGTGTTTGGGATGGT+GGG 0.499647 2.1:-40067244 MS.gene043783:CDS
ACTCGAGGAACTCGCCGGCT+TGG 0.503481 2.1:-40067352 MS.gene043783:CDS
AATCATATCAGAAATGAAAC+CGG 0.508019 2.1:+40066406 None:intergenic
TCAACAATATTTGATATTGG+AGG 0.508821 2.1:-40066449 MS.gene043783:CDS
GGTACGCAGGGCTTTAGTGG+TGG 0.512487 2.1:-40066209 MS.gene043783:CDS
ACTGCAATCATTGATGGTAC+TGG 0.512877 2.1:-40066161 MS.gene043783:CDS
TATTCTTGATTCAAGTTGCA+AGG 0.512896 2.1:-40066034 MS.gene043783:CDS
AAAGCCCTGCGTACCGAGAT+CGG 0.516139 2.1:+40066217 None:intergenic
GTTGTTTCTTGTGTTTGGGA+TGG 0.516674 2.1:-40067248 MS.gene043783:CDS
GCACGATACAAAAGCAGAGC+TGG 0.518122 2.1:+40066338 None:intergenic
GAATCAAGGGTTGAATTGGT+TGG 0.521050 2.1:+40067397 None:intergenic
AAATACACTGTTCCATCCCC+TGG 0.521294 2.1:+40066091 None:intergenic
GTGTTTGGGATGGTGGGCAG+CGG 0.524244 2.1:-40067238 MS.gene043783:CDS
ACATATTTGGTGGAATAGTA+GGG 0.524391 2.1:+40067510 None:intergenic
AGGAACTCGCCGGCTTGGCG+AGG 0.524885 2.1:-40067347 MS.gene043783:CDS
GTTGAATTGGTTGGAACTGT+GGG 0.528850 2.1:+40067406 None:intergenic
GGAATTCGCATACCTCGGTT+GGG 0.531280 2.1:-40067042 MS.gene043783:CDS
GAATCGATAGAAACAAGAAC+AGG 0.531762 2.1:+40066360 None:intergenic
CAAAGAGGGGATTGATAATG+GGG 0.532878 2.1:-40067069 MS.gene043783:CDS
CGAGATCAACCTCGCCAAGC+CGG 0.534196 2.1:+40067338 None:intergenic
GTACGCAGGGCTTTAGTGGT+GGG 0.535609 2.1:-40066208 MS.gene043783:CDS
TTAGAGGCGTGGAAAATACC+TGG 0.539044 2.1:-40066743 MS.gene043783:CDS
ATCTATCTCACAAAACTGCT+GGG 0.540237 2.1:-40066478 MS.gene043783:CDS
ATTCAACCCTTGATTCGGGT+TGG 0.543048 2.1:-40067390 MS.gene043783:CDS
GTTATGTTTCAACCAGGGGA+TGG 0.543951 2.1:-40066103 MS.gene043783:CDS
AGTTGTTGGGAATTGGCTTG+GGG 0.544754 2.1:-40067095 MS.gene043783:CDS
ATGGAACTCGAGGAACTCGC+CGG 0.545124 2.1:-40067357 MS.gene043783:CDS
GAAACATAACCTGCTAAAAG+TGG 0.547419 2.1:+40066116 None:intergenic
AGAGATTCAGAGCTGGAGCT+AGG 0.548429 2.1:+40067560 None:intergenic
TAATAAGAACACATATTTGG+TGG 0.548927 2.1:+40067500 None:intergenic
GGGGTTTGCGAGTCCTGGAA+TGG 0.552952 2.1:-40066885 MS.gene043783:CDS
GCTGCCGATCTCGGTACGCA+GGG 0.553404 2.1:-40066221 MS.gene043783:CDS
AAAGCAAACGGAGCGACTCC+AGG 0.556148 2.1:+40066725 None:intergenic
GGTTGAATTGGTTGGAACTG+TGG 0.556170 2.1:+40067405 None:intergenic
GCAGTTGTAATTAGCGAGTA+CGG 0.564151 2.1:+40066248 None:intergenic
TAGCAGGTTATGTTTCAACC+AGG 0.566962 2.1:-40066109 MS.gene043783:CDS
ATTGATGGTACTGGTTCTGT+TGG 0.568619 2.1:-40066152 MS.gene043783:CDS
AGGCTTCCTAGATGCATGAA+AGG 0.573970 2.1:+40067456 None:intergenic
GCAGGTTATGTTTCAACCAG+GGG 0.574009 2.1:-40066107 MS.gene043783:CDS
GGTTTGATGTTCATGTGTTG+GGG 0.575219 2.1:-40067183 MS.gene043783:CDS
TTGGCTTGGGGAATCAAAGA+GGG 0.575740 2.1:-40067083 MS.gene043783:CDS
ATGTATTTGGCTGGTCATGT+TGG 0.577593 2.1:-40067289 MS.gene043783:CDS
TTTGGAAAGAGATTCAGAGC+TGG 0.577955 2.1:+40067553 None:intergenic
CCAACAACTGCAACAACACA+AGG 0.578535 2.1:+40067109 None:intergenic
AAATCCAGAAAGAAACATCA+AGG 0.579928 2.1:+40066283 None:intergenic
GTTCTAGGCGGAATCACCGC+CGG 0.584479 2.1:-40066425 MS.gene043783:CDS
AGCAGGTTATGTTTCAACCA+GGG 0.585007 2.1:-40066108 MS.gene043783:CDS
TGTTGAAAGGGACGGTGCAG+AGG 0.590416 2.1:-40066849 MS.gene043783:CDS
AATTGAAATGAGTGTTGAAA+GGG 0.597953 2.1:-40066861 MS.gene043783:CDS
TCTGCAGAAAGTCGAATCAG+AGG 0.600067 2.1:-40066825 MS.gene043783:CDS
AGGCGGCCAACCCGAATCAA+GGG 0.601656 2.1:+40067384 None:intergenic
CTCGCAAACCCCATATCCAC+CGG 0.601760 2.1:+40066896 None:intergenic
ACCAGCCAAATACATGCCAA+TGG 0.609265 2.1:+40067297 None:intergenic
CTCGCTAATTACAACTGCTG+TGG 0.611850 2.1:-40066243 MS.gene043783:CDS
TTGTGAATCCGGTGGATATG+GGG 0.613842 2.1:-40066904 MS.gene043783:CDS
TTGGTGATAGGATTGATTTG+AGG 0.616292 2.1:-40067270 MS.gene043783:CDS
CCTGTGTGCCTTATGTAGAA+GGG 0.616762 2.1:+40066653 None:intergenic
CCCTTCTACATAAGGCACAC+AGG 0.627165 2.1:-40066653 MS.gene043783:intron
AAATTGAAATGAGTGTTGAA+AGG 0.632392 2.1:-40066862 MS.gene043783:CDS
GATATGGAATTCGCATACCT+CGG 0.635544 2.1:-40067047 MS.gene043783:CDS
GAGTGTTTCAGTCAATTGGG+TGG 0.653771 2.1:-40067132 MS.gene043783:CDS
GTTTCTTGTTGTGAATCCGG+TGG 0.666770 2.1:-40066912 MS.gene043783:CDS
CCTCGAGTTCCATTAAAAGG+CGG 0.667716 2.1:+40067367 None:intergenic
ACCAATGATATTCCCAACCG+AGG 0.672100 2.1:+40067030 None:intergenic
TGGCTTGGGGAATCAAAGAG+GGG 0.677167 2.1:-40067082 MS.gene043783:CDS
CATATCAGAAATGAAACCGG+CGG 0.690344 2.1:+40066409 None:intergenic
GATATTGGAGGAGTTCTAGG+CGG 0.700532 2.1:-40066437 MS.gene043783:CDS
GAAATGAGTGTTGAAAGGGA+CGG 0.799585 2.1:-40066857 MS.gene043783:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAAACTAAATAAGATA+TGG + chr2.1:40067018-40067037 None:intergenic 15.0%
!! CTTTCAACAATATTTGATAT+TGG - chr2.1:40067135-40067154 MS.gene043783:CDS 20.0%
!! TGATAATAAGAACACATATT+TGG + chr2.1:40066093-40066112 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG - chr2.1:40066371-40066390 MS.gene043783:CDS 20.0%
! AAAAAGAGACAAAAAGCAAA+CGG + chr2.1:40066877-40066896 None:intergenic 25.0%
! AATCATATCAGAAATGAAAC+CGG + chr2.1:40067184-40067203 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG + chr2.1:40066090-40066109 None:intergenic 25.0%
! TCAACAATATTTGATATTGG+AGG - chr2.1:40067138-40067157 MS.gene043783:CDS 25.0%
!! AGAACACTTTTAACAATACT+AGG + chr2.1:40066157-40066176 None:intergenic 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG - chr2.1:40066725-40066744 MS.gene043783:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG - chr2.1:40066726-40066745 MS.gene043783:CDS 25.0%
!!! AATTTTGATCATTTTCGTTG+GGG - chr2.1:40066639-40066658 MS.gene043783:intron 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG - chr2.1:40066157-40066176 MS.gene043783:CDS 25.0%
!!! GAATTTTGATCATTTTCGTT+GGG - chr2.1:40066638-40066657 MS.gene043783:intron 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG - chr2.1:40066370-40066389 MS.gene043783:CDS 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG - chr2.1:40066156-40066175 MS.gene043783:CDS 25.0%
!!! TTGAATTCGTTATTTTGTGT+TGG - chr2.1:40067065-40067084 MS.gene043783:CDS 25.0%
AAATCCAGAAAGAAACATCA+AGG + chr2.1:40067307-40067326 None:intergenic 30.0%
ACGAAAATGATCAAAATTCC+AGG + chr2.1:40066637-40066656 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG - chr2.1:40066908-40066927 MS.gene043783:CDS 30.0%
TTTCTTACTTCTTACTCCAT+TGG - chr2.1:40066274-40066293 MS.gene043783:CDS 30.0%
! ACACTTTTAACAATACTAGG+AGG + chr2.1:40066154-40066173 None:intergenic 30.0%
! ACATATTTGGTGGAATAGTA+GGG + chr2.1:40066080-40066099 None:intergenic 30.0%
! GAATTTGAAATCGAACTATC+AGG + chr2.1:40066805-40066824 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG - chr2.1:40067308-40067327 MS.gene043783:CDS 30.0%
! GTTTCATCTATTTTCTTTGC+TGG - chr2.1:40067528-40067547 MS.gene043783:CDS 30.0%
!! GGAATTTTGATCATTTTCGT+TGG - chr2.1:40066637-40066656 MS.gene043783:intron 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG - chr2.1:40067553-40067572 MS.gene043783:CDS 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG - chr2.1:40066376-40066395 MS.gene043783:CDS 30.0%
AACCAATTCAACCCTTGATT+CGG - chr2.1:40066192-40066211 MS.gene043783:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG - chr2.1:40067108-40067127 MS.gene043783:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG - chr2.1:40067420-40067439 MS.gene043783:CDS 35.0%
AGATAAGAGAGAAGCTTTCA+GGG - chr2.1:40067580-40067599 MS.gene043783:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG - chr2.1:40066516-40066535 MS.gene043783:intron 35.0%
ATCACCTTGATGTTTCTTTC+TGG - chr2.1:40067300-40067319 MS.gene043783:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG - chr2.1:40067109-40067128 MS.gene043783:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG - chr2.1:40066926-40066945 MS.gene043783:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG + chr2.1:40066718-40066737 None:intergenic 35.0%
GAAACATAACCTGCTAAAAG+TGG + chr2.1:40067474-40067493 None:intergenic 35.0%
GAATCGATAGAAACAAGAAC+AGG + chr2.1:40067230-40067249 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG - chr2.1:40066817-40066836 MS.gene043783:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG - chr2.1:40066403-40066422 MS.gene043783:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG - chr2.1:40066285-40066304 MS.gene043783:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG - chr2.1:40067147-40067166 MS.gene043783:CDS 35.0%
! CACATATTTGGTGGAATAGT+AGG + chr2.1:40066081-40066100 None:intergenic 35.0%
! TCAAAGAGGGGATTGATAAT+GGG - chr2.1:40066517-40066536 MS.gene043783:intron 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG - chr2.1:40066672-40066691 MS.gene043783:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG - chr2.1:40066828-40066847 MS.gene043783:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG - chr2.1:40066335-40066354 MS.gene043783:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG - chr2.1:40066334-40066353 MS.gene043783:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG - chr2.1:40066317-40066336 MS.gene043783:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG - chr2.1:40067315-40067334 MS.gene043783:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG - chr2.1:40066383-40066402 MS.gene043783:CDS 35.0%
!!! TTATTTTGTGTTGGTTGCAG+CGG - chr2.1:40067074-40067093 MS.gene043783:CDS 35.0%
ACCAATTCAACCCTTGATTC+GGG - chr2.1:40066193-40066212 MS.gene043783:CDS 40.0%
AGCAGGTTATGTTTCAACCA+GGG - chr2.1:40067479-40067498 MS.gene043783:CDS 40.0%
ATGCTTCCTTTCATGCATCT+AGG - chr2.1:40066125-40066144 MS.gene043783:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG + chr2.1:40067181-40067200 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG + chr2.1:40066193-40066212 None:intergenic 40.0%
GAGATAAGAGAGAAGCTTTC+AGG - chr2.1:40067579-40067598 MS.gene043783:CDS 40.0%
GATATGGAATTCGCATACCT+CGG - chr2.1:40066540-40066559 MS.gene043783:intron 40.0%
GCAGTTGTAATTAGCGAGTA+CGG + chr2.1:40067342-40067361 None:intergenic 40.0%
GGTTTGATGTTCATGTGTTG+GGG - chr2.1:40066404-40066423 MS.gene043783:CDS 40.0%
GTTCCTCGAGTTCCATTAAA+AGG + chr2.1:40066226-40066245 None:intergenic 40.0%
GTTGAATTGGTTGGAACTGT+GGG + chr2.1:40066184-40066203 None:intergenic 40.0%
TAGCAGGTTATGTTTCAACC+AGG - chr2.1:40067478-40067497 MS.gene043783:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG - chr2.1:40066485-40066504 MS.gene043783:CDS 40.0%
TTTGGAAAGAGATTCAGAGC+TGG + chr2.1:40066037-40066056 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG - chr2.1:40067426-40067445 MS.gene043783:CDS 40.0%
! ATGTATTTGGCTGGTCATGT+TGG - chr2.1:40066298-40066317 MS.gene043783:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG - chr2.1:40066402-40066421 MS.gene043783:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG - chr2.1:40066479-40066498 MS.gene043783:CDS 40.0%
! GATCATTTTCGTTGGGGTTT+TGG - chr2.1:40066645-40066664 MS.gene043783:intron 40.0%
! GGTTGGGAATATCATTGGTT+CGG - chr2.1:40066561-40066580 MS.gene043783:intron 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG - chr2.1:40066452-40066471 MS.gene043783:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG - chr2.1:40067256-40067275 MS.gene043783:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG - chr2.1:40066451-40066470 MS.gene043783:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+GGG - chr2.1:40066343-40066362 MS.gene043783:CDS 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG + chr2.1:40066067-40066086 None:intergenic 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG - chr2.1:40067435-40067454 MS.gene043783:CDS 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG - chr2.1:40066574-40066593 MS.gene043783:intron 40.0%
!! CAAAGAGGGGATTGATAATG+GGG - chr2.1:40066518-40066537 MS.gene043783:intron 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG - chr2.1:40066573-40066592 MS.gene043783:intron 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG - chr2.1:40066833-40066852 MS.gene043783:CDS 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG - chr2.1:40067255-40067274 MS.gene043783:CDS 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG - chr2.1:40066730-40066749 MS.gene043783:CDS 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG + chr2.1:40066068-40066087 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG + chr2.1:40066069-40066088 None:intergenic 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG - chr2.1:40066339-40066358 MS.gene043783:CDS 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG + chr2.1:40066070-40066089 None:intergenic 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG - chr2.1:40066415-40066434 MS.gene043783:CDS 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG - chr2.1:40066594-40066613 MS.gene043783:intron 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG - chr2.1:40066595-40066614 MS.gene043783:intron 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG - chr2.1:40066599-40066618 MS.gene043783:intron 40.0%
AAATACACTGTTCCATCCCC+TGG + chr2.1:40067499-40067518 None:intergenic 45.0%
ACCAATGATATTCCCAACCG+AGG + chr2.1:40066560-40066579 None:intergenic 45.0%
ACCAGCCAAATACATGCCAA+TGG + chr2.1:40066293-40066312 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG + chr2.1:40066197-40066216 None:intergenic 45.0%
ACCTCGGTTGGGAATATCAT+TGG - chr2.1:40066556-40066575 MS.gene043783:intron 45.0%
ACCTGTGTGCCTTATGTAGA+AGG + chr2.1:40066938-40066957 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG + chr2.1:40066134-40066153 None:intergenic 45.0%
CCAACAACTGCAACAACACA+AGG + chr2.1:40066481-40066500 None:intergenic 45.0%
CCTCGAGTTCCATTAAAAGG+CGG + chr2.1:40066223-40066242 None:intergenic 45.0%
CCTGTGTGCCTTATGTAGAA+GGG + chr2.1:40066937-40066956 None:intergenic 45.0%
CTCGCTAATTACAACTGCTG+TGG - chr2.1:40067344-40067363 MS.gene043783:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG - chr2.1:40066455-40066474 MS.gene043783:CDS 45.0%
GCAGGTTATGTTTCAACCAG+GGG - chr2.1:40067480-40067499 MS.gene043783:CDS 45.0%
GGTTGAATTGGTTGGAACTG+TGG + chr2.1:40066185-40066204 None:intergenic 45.0%
GTTATGTTTCAACCAGGGGA+TGG - chr2.1:40067484-40067503 MS.gene043783:CDS 45.0%
GTTGTGAATCCGGTGGATAT+GGG - chr2.1:40066682-40066701 MS.gene043783:CDS 45.0%
TCCATTGGCATGTATTTGGC+TGG - chr2.1:40066289-40066308 MS.gene043783:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG - chr2.1:40066762-40066781 MS.gene043783:CDS 45.0%
TGTTGTGAATCCGGTGGATA+TGG - chr2.1:40066681-40066700 MS.gene043783:CDS 45.0%
TTGTGAATCCGGTGGATATG+GGG - chr2.1:40066683-40066702 MS.gene043783:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG - chr2.1:40066491-40066510 MS.gene043783:CDS 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG - chr2.1:40066478-40066497 MS.gene043783:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG - chr2.1:40067389-40067408 MS.gene043783:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG - chr2.1:40067388-40067407 MS.gene043783:CDS 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG - chr2.1:40066582-40066601 MS.gene043783:intron 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG - chr2.1:40066433-40066452 MS.gene043783:CDS 45.0%
! GTTTCTTGTGTTTGGGATGG+TGG - chr2.1:40066342-40066361 MS.gene043783:CDS 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG - chr2.1:40066675-40066694 MS.gene043783:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG - chr2.1:40066844-40066863 MS.gene043783:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG - chr2.1:40066492-40066511 MS.gene043783:CDS 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG - chr2.1:40066197-40066216 MS.gene043783:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG - chr2.1:40066503-40066522 MS.gene043783:intron 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG - chr2.1:40067150-40067169 MS.gene043783:CDS 45.0%
!! GGGGATTGATAATGGGGATA+TGG - chr2.1:40066524-40066543 MS.gene043783:intron 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG - chr2.1:40066504-40066523 MS.gene043783:intron 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG - chr2.1:40066593-40066612 MS.gene043783:intron 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG - chr2.1:40066589-40066608 MS.gene043783:intron 45.0%
AGAGATTCAGAGCTGGAGCT+AGG + chr2.1:40066030-40066049 None:intergenic 50.0%
CCCTTCTACATAAGGCACAC+AGG - chr2.1:40066934-40066953 MS.gene043783:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG + chr2.1:40067252-40067271 None:intergenic 50.0%
GCAGTTGTTGGGAATTGGCT+TGG - chr2.1:40066490-40066509 MS.gene043783:CDS 50.0%
GGAATTCGCATACCTCGGTT+GGG - chr2.1:40066545-40066564 MS.gene043783:intron 50.0%
TGGAATTCGCATACCTCGGT+TGG - chr2.1:40066544-40066563 MS.gene043783:intron 50.0%
TGGAGCTAGGCTCAAACTCT+TGG + chr2.1:40066017-40066036 None:intergenic 50.0%
! CCGCCTTTTAATGGAACTCG+AGG - chr2.1:40066220-40066239 MS.gene043783:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG - chr2.1:40066505-40066524 MS.gene043783:intron 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG - chr2.1:40067462-40067481 MS.gene043783:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG - chr2.1:40066305-40066324 MS.gene043783:CDS 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG + chr2.1:40066055-40066074 None:intergenic 50.0%
AAAGCAAACGGAGCGACTCC+AGG + chr2.1:40066865-40066884 None:intergenic 55.0%
AAAGCCCTGCGTACCGAGAT+CGG + chr2.1:40067373-40067392 None:intergenic 55.0%
ATGGAACTCGAGGAACTCGC+CGG - chr2.1:40066230-40066249 MS.gene043783:CDS 55.0%
CTCGCAAACCCCATATCCAC+CGG + chr2.1:40066694-40066713 None:intergenic 55.0%
GATATGGGGTTTGCGAGTCC+TGG - chr2.1:40066697-40066716 MS.gene043783:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG - chr2.1:40067447-40067466 MS.gene043783:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG - chr2.1:40066738-40066757 MS.gene043783:CDS 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG - chr2.1:40067379-40067398 MS.gene043783:CDS 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG + chr2.1:40066060-40066079 None:intergenic 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG - chr2.1:40066609-40066628 MS.gene043783:intron 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG - chr2.1:40066211-40066230 MS.gene043783:CDS 55.0%
AAGGCGGCCAACCCGAATCA+AGG + chr2.1:40066207-40066226 None:intergenic 60.0%
ACTGCTGTGGCTGCCGATCT+CGG - chr2.1:40067357-40067376 MS.gene043783:CDS 60.0%
AGGCGGCCAACCCGAATCAA+GGG + chr2.1:40066206-40066225 None:intergenic 60.0%
CGAGATCAACCTCGCCAAGC+CGG + chr2.1:40066252-40066271 None:intergenic 60.0%
GGGGTTTGCGAGTCCTGGAA+TGG - chr2.1:40066702-40066721 MS.gene043783:CDS 60.0%
TGGTGGGAATTCTCGGGCAC+TGG - chr2.1:40067395-40067414 MS.gene043783:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG - chr2.1:40067375-40067394 MS.gene043783:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG - chr2.1:40067378-40067397 MS.gene043783:CDS 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG - chr2.1:40066616-40066635 MS.gene043783:intron 60.0%
! GTTCTAGGCGGAATCACCGC+CGG - chr2.1:40067162-40067181 MS.gene043783:CDS 60.0%
!! GTGTTGGTTGCAGCGGTTGC+TGG - chr2.1:40067081-40067100 MS.gene043783:CDS 60.0%
!! GTGTTTGGGATGGTGGGCAG+CGG - chr2.1:40066349-40066368 MS.gene043783:CDS 60.0%
GCTGCCGATCTCGGTACGCA+GGG - chr2.1:40067366-40067385 MS.gene043783:CDS 65.0%
! ACTCGAGGAACTCGCCGGCT+TGG - chr2.1:40066235-40066254 MS.gene043783:CDS 65.0%
GGCTGCCGATCTCGGTACGC+AGG - chr2.1:40067365-40067384 MS.gene043783:CDS 70.0%
!! AGGAACTCGCCGGCTTGGCG+AGG - chr2.1:40066240-40066259 MS.gene043783:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 40066001 40067608 40066001 ID=MS.gene043783
chr2.1 mRNA 40066001 40067608 40066001 ID=MS.gene043783.t1;Parent=MS.gene043783
chr2.1 exon 40066654 40067608 40066654 ID=MS.gene043783.t1.exon1;Parent=MS.gene043783.t1
chr2.1 CDS 40066654 40067608 40066654 ID=cds.MS.gene043783.t1;Parent=MS.gene043783.t1
chr2.1 exon 40066001 40066515 40066001 ID=MS.gene043783.t1.exon2;Parent=MS.gene043783.t1
chr2.1 CDS 40066001 40066515 40066001 ID=cds.MS.gene043783.t1;Parent=MS.gene043783.t1
Gene Sequence

>MS.gene043783

ATGGAATCAAATTCCAAGAGTTTGAGCCTAGCTCCAGCTCTGAATCTCTTTCCAAACCTGAAACCCCCTCACAAAACCCTACTATTCCACCAAATATGTGTTCTTATTATCACATTTCTTGCATATGCTTCCTTTCATGCATCTAGGAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACTCGAGGAACTCGCCGGCTTGGCGAGGTTGATCTCGCATTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCGGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAATTTTGATCATTTTCGTTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCGGTGGATATGGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAAGGGACGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGGTAATTGTTCATTGATGCAAAAATATATCATATCTGATAGATTTATTGCATTGATTAAGCCATATCTTATTTAGTTTACATAATTTTCATGAATTATGATTTTTTTTTATTGAATTCGTTATTTTGTGTTGGTTGCAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATTTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTATGTTTCAACCAGGGGATGGAACAGTGTATTTTTTATGCTCGTTTCATCTATTTTCTTTGCTGGTTTATTCTTGATTCAAGTTGCAAGGACTGAGATAAGAGAGAAGCTTTCAGGGAAGTGA
Protein sequence

>MS.gene043783.t1

MESNSKSLSLAPALNLFPNLKPPHKTLLFHQICVLIITFLAYASFHASRKPPSIVKSVLGPTVPTNSTLDSGWPPFNGTRGTRRLGEVDLAFLTSYSIGMYLAGHVGDRIDLRLFLVFGMVGSGFFTILFGLGYWFDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKRGLIMGIWNSHTSVGNIIGSVIASGVLEFGWGWSFVVPGILIIFVGVLVFLFLVVNPVDMGFASPGMEIEMSVERDGAEDLQKVESEEAKLIDPDSSISNSSSAIGFLEAWKIPGVAPFAFCLFFSKFVAYTFLYWLPFYIRHTAVAGVNLSHKTAGLLSTIFDIGGVLGGITAGFISDMIEARAVTSILFLFLSIPALLLYRAFGSISMFTNITLMFLSGFLVNGPYSLITTAVAADLGTQGFSGGNSRALATVTAIIDGTGSVGAALGPLLAGYVSTRGWNSVFFMLVSSIFFAGLFLIQVARTEIREKLSGK