AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043994

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043994.t1 MTR_1g021120 97.268 549 15 0 1 549 1 549 0.0 1095
MS.gene043994.t1 MTR_8g086520 57.534 511 217 0 35 545 12 522 0.0 615
MS.gene043994.t1 MTR_3g080390 58.171 514 214 1 33 545 5 518 0.0 609
MS.gene043994.t1 MTR_2g016460 54.510 510 232 0 36 545 13 522 0.0 595
MS.gene043994.t1 MTR_3g078270 51.852 513 245 1 36 546 19 531 0.0 543
MS.gene043994.t1 MTR_4g106750 50.369 542 245 4 12 546 7 531 0.0 537
MS.gene043994.t1 MTR_8g063220 51.076 511 248 1 38 546 22 532 0.0 533
MS.gene043994.t1 MTR_1g106085 52.047 513 242 3 36 546 16 526 0.0 530
MS.gene043994.t1 MTR_8g086520 57.788 443 187 0 35 477 12 454 0.0 528
MS.gene043994.t1 MTR_3g103230 49.423 520 253 4 32 546 39 553 2.05e-178 514
MS.gene043994.t1 MTR_5g035180 48.204 529 268 3 21 546 12 537 2.28e-177 511
MS.gene043994.t1 MTR_5g022110 49.903 513 248 3 38 546 39 546 1.32e-172 499
MS.gene043994.t1 MTR_8g086520 57.855 401 169 0 145 545 6 406 4.95e-172 493
MS.gene043994.t1 MTR_4g106750 51.129 487 226 3 67 546 1 482 1.10e-171 494
MS.gene043994.t1 MTR_8g086520 58.462 390 162 0 35 424 12 401 1.73e-162 468
MS.gene043994.t1 MTR_4g106750 51.226 367 177 1 182 546 13 379 7.85e-131 387
MS.gene043994.t1 MTR_2g084895 35.327 535 304 9 42 540 146 674 6.42e-102 322
MS.gene043994.t1 MTR_8g068550 32.083 533 326 4 42 542 225 753 1.63e-94 305
MS.gene043994.t1 MTR_4g055290 33.395 539 312 8 37 539 148 675 3.78e-93 299
MS.gene043994.t1 MTR_2g103510 34.291 522 297 11 43 547 94 586 9.90e-92 293
MS.gene043994.t1 MTR_5g032020 32.707 532 322 4 42 541 167 694 2.89e-89 290
MS.gene043994.t1 MTR_8g086535 65.000 100 35 0 325 424 18 117 1.16e-35 130
MS.gene043994.t1 MTR_5g042660 53.571 56 26 0 478 533 39 94 9.67e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043994.t1 AT2G26510 69.565 529 160 1 22 549 23 551 0.0 741
MS.gene043994.t1 AT2G34190 55.882 510 225 0 36 545 13 522 0.0 607
MS.gene043994.t1 AT2G05760 56.556 511 221 1 36 545 8 518 0.0 603
MS.gene043994.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 537
MS.gene043994.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 537
MS.gene043994.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 537
MS.gene043994.t1 AT1G60030 49.053 528 264 2 21 546 13 537 0.0 530
MS.gene043994.t1 AT2G26510 70.292 377 112 0 22 398 23 399 0.0 520
MS.gene043994.t1 AT5G49990 51.267 513 248 1 36 546 15 527 2.80e-178 513
MS.gene043994.t1 AT5G49990 51.267 513 248 1 36 546 15 527 2.80e-178 513
MS.gene043994.t1 AT5G49990 51.267 513 248 1 36 546 15 527 2.80e-178 513
MS.gene043994.t1 AT5G49990 51.267 513 248 1 36 546 15 527 2.80e-178 513
MS.gene043994.t1 AT2G26510 70.604 364 107 0 22 385 23 386 5.12e-178 508
MS.gene043994.t1 AT1G10540 47.834 531 269 4 21 546 11 538 1.41e-176 509
MS.gene043994.t1 AT1G49960 50.294 511 252 1 38 546 15 525 1.21e-166 483
MS.gene043994.t1 AT1G65550 46.525 518 266 3 38 546 25 540 1.39e-164 479
MS.gene043994.t1 AT5G62890 50.429 466 219 1 12 477 7 460 4.83e-161 467
MS.gene043994.t1 AT1G10540 46.457 381 198 3 21 398 11 388 3.00e-119 357
MS.gene043994.t1 AT5G25420 40.995 422 181 5 38 459 37 390 4.93e-101 311
MS.gene043994.t1 AT2G27810 33.520 537 320 6 41 543 167 700 4.92e-93 300
MS.gene043994.t1 AT2G27810 32.086 561 320 7 41 543 167 724 9.40e-88 286
MS.gene043994.t1 AT4G38050 31.285 537 333 4 43 547 175 707 1.67e-81 269
MS.gene043994.t1 AT2G27810 36.085 424 252 3 41 446 167 589 5.05e-80 262
MS.gene043994.t1 AT2G27810 36.340 377 221 3 41 399 167 542 1.91e-68 230

Find 158 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGCCGCAGCCAGGCTTTC+TGG 0.141398 1.3:+3577053 MS.gene043994:CDS
TTATCTGCATTGCCGTTATT+TGG 0.173804 1.3:+3576106 MS.gene043994:CDS
GGACCACCACCTCAGAATTT+TGG 0.200219 1.3:+3574274 MS.gene043994:CDS
TTCAAGGCTTCCGGTGATTA+TGG 0.205728 1.3:+3575115 MS.gene043994:CDS
ATGTCTATTTCAGGTAAATT+TGG 0.226588 1.3:+3577732 MS.gene043994:intron
GCCGCTATCCTTACCGTTGC+TGG 0.267986 1.3:+3576135 MS.gene043994:CDS
CAGCCGAAGCATCGGGCTTC+AGG 0.280020 1.3:+3577103 MS.gene043994:CDS
TGCAGCTGAAGCATTGCTTT+TGG 0.280132 1.3:+3574765 MS.gene043994:intron
CTATCTCCTGCAGCTGCTAC+TGG 0.282930 1.3:+3577902 MS.gene043994:intron
TTCAAAGCTAGTCATGTCTT+TGG 0.283918 1.3:+3576619 MS.gene043994:CDS
GACATGACTAGCTTTGAATA+TGG 0.296354 1.3:-3576614 None:intergenic
TTCAGACTTGGTTTGGTTCA+AGG 0.300502 1.3:+3575099 MS.gene043994:CDS
AACTTTCGCATCTGAGAATC+AGG 0.310869 1.3:+3575196 MS.gene043994:CDS
TTCGGCTTAACCTTGTTTCT+CGG 0.314131 1.3:+3577977 MS.gene043994:CDS
TCTGTCCACAGCTGTTTGTT+TGG 0.324863 1.3:-3578378 None:intergenic
CAGTATATAGCAGCGAATAT+TGG 0.336373 1.3:-3577780 None:intergenic
TTGGTTTGGTTCAAGGCTTC+CGG 0.345806 1.3:+3575106 MS.gene043994:CDS
TATCTGCATTGCCGTTATTT+GGG 0.347060 1.3:+3576107 MS.gene043994:CDS
TCAAGGCTTCCGGTGATTAT+GGG 0.354222 1.3:+3575116 MS.gene043994:CDS
GCATCCATTCAAATCCTTCA+TGG 0.366156 1.3:+3574353 MS.gene043994:CDS
GAAAACATAGATATTCCTTA+TGG 0.375416 1.3:-3577957 None:intergenic
CAGACATTGTTGTTTATGTC+TGG 0.378631 1.3:+3575062 MS.gene043994:CDS
CATCCACCATTGGTTCTAAC+TGG 0.379887 1.3:-3578052 None:intergenic
GATTCTCAGATGCGAAAGTT+TGG 0.384482 1.3:-3575193 None:intergenic
GAGAGGAATTGATGCGAAAA+AGG 0.386029 1.3:-3577757 None:intergenic
AGTATATAGCAGCGAATATT+GGG 0.387392 1.3:-3577779 None:intergenic
AAGCAACCTTGTACCTCAAA+TGG 0.396389 1.3:+3574834 MS.gene043994:CDS
AGCACTTGTCACTTCTTTCG+AGG 0.406623 1.3:+3576654 MS.gene043994:CDS
TCAAAGCTAGTCATGTCTTT+GGG 0.407287 1.3:+3576620 MS.gene043994:CDS
GGCATTTGTGGCTCTATTGT+TGG 0.413169 1.3:+3577238 MS.gene043994:CDS
CCTGAACTGACGGTGGTGCT+TGG 0.414463 1.3:-3574240 None:intergenic
GACTTTCAAGGGGTCCCACT+TGG 0.421667 1.3:+3574296 MS.gene043994:CDS
CAGCACTACATTGTGATGCT+TGG 0.426352 1.3:+3574793 MS.gene043994:CDS
ACATTGCTTCAGACTTGGTT+TGG 0.426916 1.3:+3575092 MS.gene043994:CDS
TCGGCTTAACCTTGTTTCTC+GGG 0.432455 1.3:+3577978 MS.gene043994:CDS
ACATGACTAGCTTTGAATAT+GGG 0.438479 1.3:-3576613 None:intergenic
ACATGACTCCCACCCATTTG+AGG 0.442621 1.3:-3574847 None:intergenic
TAGTCATGTCTTTGGGATGA+TGG 0.446341 1.3:+3576627 MS.gene043994:CDS
CAGACATAAACAACAATGTC+TGG 0.448314 1.3:-3575061 None:intergenic
CCAACTGTGGCAATAATAGT+TGG 0.450422 1.3:+3578329 MS.gene043994:CDS
GGGTGTTGCACCAGAAAGCC+TGG 0.450632 1.3:-3577063 None:intergenic
GGTGGGTTCCTTTCCAGAAA+AGG 0.452846 1.3:+3578411 MS.gene043994:CDS
CCAAGCACCACCGTCAGTTC+AGG 0.456536 1.3:+3574240 MS.gene043994:CDS
ATGTGCTCAGCCGAAGCATC+GGG 0.457152 1.3:+3577096 MS.gene043994:CDS
TGAGGTGGTGGTCCCGGTGG+CGG 0.457958 1.3:-3574265 None:intergenic
TCTGCTGATTGTAACACAAC+AGG 0.459246 1.3:+3575946 MS.gene043994:CDS
ACTATTATTGCCACAGTTGG+TGG 0.463983 1.3:-3578326 None:intergenic
TACACAATTAGAACAATTCA+AGG 0.469316 1.3:+3575502 MS.gene043994:CDS
AGTTGGTGGAGATGAGAATA+TGG 0.469785 1.3:-3578312 None:intergenic
ATGCTGATTGAAGGCATTTG+TGG 0.474680 1.3:+3577226 MS.gene043994:CDS
TTGCAAATAACAATTCCATA+AGG 0.480068 1.3:+3577942 MS.gene043994:CDS
GTCAGTTCAGGCACCGCCAC+CGG 0.482612 1.3:+3574252 MS.gene043994:CDS
GTGGTATGTGTGGTTGGACT+CGG 0.482699 1.3:+3575761 MS.gene043994:CDS
TATCTCCTGCAGCTGCTACT+GGG 0.483276 1.3:+3577903 MS.gene043994:intron
TCACCTGAAGCCCGATGCTT+CGG 0.483967 1.3:-3577106 None:intergenic
CTGAGCACATGTGCCGGAGG+GGG 0.486945 1.3:-3577083 None:intergenic
GTACTTTCTTCGCCGCAGCC+AGG 0.487390 1.3:+3577045 MS.gene043994:CDS
GGCATTAGCATGCTGATTGA+AGG 0.489200 1.3:+3577217 MS.gene043994:CDS
ATCACTTGCTTTCTATCTAC+CGG 0.489632 1.3:+3575142 MS.gene043994:CDS
CTAACTGGACCATGACCATC+AGG 0.492436 1.3:-3578037 None:intergenic
CATGTGCTCAGCCGAAGCAT+CGG 0.494578 1.3:+3577095 MS.gene043994:CDS
TCAACACATTGCTTCAGACT+TGG 0.504520 1.3:+3575087 MS.gene043994:CDS
CGGCTGAGCACATGTGCCGG+AGG 0.507745 1.3:-3577086 None:intergenic
AAATTCTGAGGTGGTGGTCC+CGG 0.508298 1.3:-3574271 None:intergenic
AGCTGAAGAAGCTGTTCCGC+TGG 0.512891 1.3:-3574322 None:intergenic
TGCACCAGAAAGCCTGGCTG+CGG 0.513047 1.3:-3577057 None:intergenic
CAGTTAGAACCAATGGTGGA+TGG 0.514008 1.3:+3578053 MS.gene043994:CDS
TCCCATTGTCATTGTACCTG+TGG 0.514468 1.3:+3575742 MS.gene043994:CDS
GGCTGAGCACATGTGCCGGA+GGG 0.515040 1.3:-3577085 None:intergenic
CTTCGGCTGAGCACATGTGC+CGG 0.519002 1.3:-3577089 None:intergenic
TAGGAATATATTCAGACAAA+CGG 0.520368 1.3:-3578475 None:intergenic
CTTGGTGGTTATCTGTGTCA+TGG 0.520942 1.3:-3574222 None:intergenic
TATTCCTAGTAGATTTCTCT+AGG 0.521140 1.3:+3578490 MS.gene043994:CDS
ACCACAGGTACAATGACAAT+GGG 0.521905 1.3:-3575743 None:intergenic
TGGACTCGGTCTGTTCGCGA+GGG 0.523642 1.3:+3575775 MS.gene043994:CDS
TGCTACATACCATGGTGCAC+GGG 0.526388 1.3:-3576223 None:intergenic
GAACTGACGGTGGTGCTTGG+TGG 0.527613 1.3:-3574237 None:intergenic
AGCAACCTTGTACCTCAAAT+GGG 0.529370 1.3:+3574835 MS.gene043994:CDS
AGTCATGTCTTTGGGATGAT+GGG 0.533189 1.3:+3576628 MS.gene043994:CDS
TTGCTACATACCATGGTGCA+CGG 0.537859 1.3:-3576224 None:intergenic
TTTGAAGCACCTTCATGCTA+AGG 0.538653 1.3:+3576053 MS.gene043994:CDS
GTGACTTACCCATCCACCAT+TGG 0.539247 1.3:-3578062 None:intergenic
CATGACTAGCTTTGAATATG+GGG 0.540448 1.3:-3576612 None:intergenic
GTTCGCGAGGGGCTTTCCAA+TGG 0.542911 1.3:+3575787 MS.gene043994:CDS
ACCATGGTGCACGGGTCAGA+AGG 0.543944 1.3:-3576215 None:intergenic
ACAATCAGCAGAAGGAGCAT+AGG 0.544491 1.3:-3575935 None:intergenic
TTGGACTCGGTCTGTTCGCG+AGG 0.546006 1.3:+3575774 MS.gene043994:CDS
AGTGAAAATGTCGGTCTACT+CGG 0.546301 1.3:+3577558 MS.gene043994:intron
CAACTGTGGCAATAATAGTT+GGG 0.546683 1.3:+3578330 MS.gene043994:CDS
CATGGTCCAGTTAGAACCAA+TGG 0.547851 1.3:+3578046 MS.gene043994:CDS
TCCCACCCATTTGAGGTACA+AGG 0.549191 1.3:-3574840 None:intergenic
AGTCCAAAATTCTGAGGTGG+TGG 0.551027 1.3:-3574277 None:intergenic
GTACCTGTGGTATGTGTGGT+TGG 0.555163 1.3:+3575755 MS.gene043994:CDS
GCTGAGCACATGTGCCGGAG+GGG 0.557764 1.3:-3577084 None:intergenic
AGGCTTCCGGTGATTATGGG+TGG 0.559262 1.3:+3575119 MS.gene043994:CDS
ATATCTTCCTTGGATATAGT+AGG 0.561320 1.3:+3575551 MS.gene043994:CDS
TATTCCTAGAGAAATCTACT+AGG 0.561420 1.3:-3578494 None:intergenic
TCCTTGGATATAGTAGGACA+TGG 0.564119 1.3:+3575557 MS.gene043994:CDS
TACTCGGTCTCACACACATA+GGG 0.564279 1.3:+3577574 MS.gene043994:CDS
AACGCCATGAAGGATTTGAA+TGG 0.564370 1.3:-3574357 None:intergenic
GTACCCCACTGAAATGGGTA+TGG 0.565676 1.3:-3576589 None:intergenic
AGCGGCGAAAGCCCAAATAA+CGG 0.565764 1.3:-3576118 None:intergenic
CCAACTATTATTGCCACAGT+TGG 0.566946 1.3:-3578329 None:intergenic
TATGATGAGCCTTAGCATGA+AGG 0.568732 1.3:-3576062 None:intergenic
ATGTTCCATACCCATTTCAG+TGG 0.568754 1.3:+3576584 MS.gene043994:CDS
TCAGTTCAGGCACCGCCACC+GGG 0.569461 1.3:+3574253 MS.gene043994:CDS
AGTTAGAACCAATGGTGGAT+GGG 0.570107 1.3:+3578054 MS.gene043994:CDS
GGTGGCGGTGCCTGAACTGA+CGG 0.570549 1.3:-3574250 None:intergenic
CTACTCGGTCTCACACACAT+AGG 0.573563 1.3:+3577573 MS.gene043994:CDS
ACCTTGTACCTCAAATGGGT+GGG 0.574764 1.3:+3574839 MS.gene043994:CDS
AAAAGATACTAACGCCATGA+AGG 0.576140 1.3:-3574367 None:intergenic
GGTTCCTTTCCAGAAAAGGA+AGG 0.579848 1.3:+3578415 MS.gene043994:CDS
TGTATGCACCAGCAACGGTA+AGG 0.580085 1.3:-3576143 None:intergenic
TGTTCCATACCCATTTCAGT+GGG 0.582233 1.3:+3576585 MS.gene043994:CDS
AACCTTGTACCTCAAATGGG+TGG 0.584925 1.3:+3574838 MS.gene043994:CDS
TTCTGGAAAGGAACCCACCA+TGG 0.587333 1.3:-3578407 None:intergenic
TTCTGAGGTGGTGGTCCCGG+TGG 0.588875 1.3:-3574268 None:intergenic
CCTTGGATATAGTAGGACAT+GGG 0.589670 1.3:+3575558 MS.gene043994:CDS
CTTGCAGATTGTGTGCAGAT+CGG 0.590049 1.3:+3575908 MS.gene043994:CDS
GATAATTGTAGTGAAAATGT+CGG 0.591973 1.3:+3577549 MS.gene043994:intron
AGGCTCATCATATACTTGAG+AGG 0.595130 1.3:+3576073 MS.gene043994:CDS
TACCACAGGTACAATGACAA+TGG 0.595377 1.3:-3575744 None:intergenic
CCCATGTCCTACTATATCCA+AGG 0.596457 1.3:-3575558 None:intergenic
TCATTTATGATCGACATCAC+CGG 0.597681 1.3:-3575161 None:intergenic
GGACTCGGTCTGTTCGCGAG+GGG 0.599513 1.3:+3575776 MS.gene043994:CDS
TGGACAGAGGACTTCCATGG+TGG 0.609884 1.3:+3578393 MS.gene043994:CDS
GGACAGAGGACTTCCATGGT+GGG 0.611007 1.3:+3578394 MS.gene043994:CDS
AGTGATCCACCCATAATCAC+CGG 0.611658 1.3:-3575125 None:intergenic
CATTGTACCTGTGGTATGTG+TGG 0.617786 1.3:+3575751 MS.gene043994:CDS
AGTATTGTATGCACCAGCAA+CGG 0.621068 1.3:-3576148 None:intergenic
GGCTGCGGCGAAGAAAGTAC+CGG 0.621910 1.3:-3577042 None:intergenic
CTTGAAAGTCCAAAATTCTG+AGG 0.626530 1.3:-3574283 None:intergenic
GTTCCTTTCCAGAAAAGGAA+GGG 0.629131 1.3:+3578416 MS.gene043994:CDS
GGGTCCCACTTGGACTCCAG+CGG 0.630127 1.3:+3574306 MS.gene043994:CDS
ATAGCAGCGAATATTGGGAG+AGG 0.630706 1.3:-3577774 None:intergenic
CTGTTCCGCTGGAGTCCAAG+TGG 0.633722 1.3:-3574311 None:intergenic
CTGTGGACAGAGGACTTCCA+TGG 0.638844 1.3:+3578390 MS.gene043994:CDS
ACCAGCAACGGTAAGGATAG+CGG 0.639172 1.3:-3576136 None:intergenic
GTCATGAACACTGCACCTGA+TGG 0.642428 1.3:+3578022 MS.gene043994:CDS
GTGTTCATGACAAAATATTG+TGG 0.643236 1.3:-3578010 None:intergenic
TGTTCCGCTGGAGTCCAAGT+GGG 0.644188 1.3:-3574310 None:intergenic
CTTGGATATAGTAGGACATG+GGG 0.644457 1.3:+3575559 MS.gene043994:CDS
GGTCCAGTTAGAACCAATGG+TGG 0.646071 1.3:+3578049 MS.gene043994:CDS
ATTCTCATCTCCACCAACTG+TGG 0.646273 1.3:+3578316 MS.gene043994:CDS
AATTGAGATCCCGAGAAACA+AGG 0.647055 1.3:-3577987 None:intergenic
TGAAGCCAAACAAACAGCTG+TGG 0.648330 1.3:+3578373 MS.gene043994:CDS
GAAAGTCCAAAATTCTGAGG+TGG 0.648379 1.3:-3574280 None:intergenic
ACCTTCTGACCCGTGCACCA+TGG 0.650262 1.3:+3576214 MS.gene043994:CDS
AGTCCAACCACACATACCAC+AGG 0.653099 1.3:-3575758 None:intergenic
ACACATAGGGAGCAGAAGAG+TGG 0.656435 1.3:+3577587 MS.gene043994:CDS
AAACAAACAGCTGTGGACAG+AGG 0.674809 1.3:+3578380 MS.gene043994:CDS
GTTGTGTTACAATCAGCAGA+AGG 0.677477 1.3:-3575943 None:intergenic
AACACTGCACCTGATGGTCA+TGG 0.680577 1.3:+3578028 MS.gene043994:CDS
ATGACTAGCTTTGAATATGG+GGG 0.701834 1.3:-3576611 None:intergenic
GGCGGTGCCTGAACTGACGG+TGG 0.713228 1.3:-3574247 None:intergenic
GTTCCATACCCATTTCAGTG+GGG 0.714740 1.3:+3576586 MS.gene043994:CDS
ATATATTCAGACAAACGGAG+AGG 0.715929 1.3:-3578470 None:intergenic
AGAGTGGTGCAAATGTCATG+TGG 0.748681 1.3:+3577603 MS.gene043994:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTTT+GGG + chr1.3:3574689-3574708 MS.gene043994:intron 0.0%
!!! TTTTTTTATTTTTATTTTTT+TGG + chr1.3:3574688-3574707 MS.gene043994:intron 0.0%
!! AATTAAAAATACTAAGAATA+AGG - chr1.3:3576693-3576712 None:intergenic 10.0%
!!! AAATTGAAATTTTTAGAATT+TGG - chr1.3:3575335-3575354 None:intergenic 10.0%
!!! AATTGAAATTTTTAGAATTT+GGG - chr1.3:3575334-3575353 None:intergenic 10.0%
!!! AATTTTTTTTTTACAAGTTA+AGG - chr1.3:3574431-3574450 None:intergenic 10.0%
!! AATTAAGTTAATTCTTCAAA+TGG - chr1.3:3577147-3577166 None:intergenic 15.0%
!! AATTCTTAACAAATAATCAA+TGG - chr1.3:3577498-3577517 None:intergenic 15.0%
!! ACTATAATAAAAGTTTGAAA+TGG + chr1.3:3575850-3575869 MS.gene043994:intron 15.0%
!! ATATATATGAAAATGACAAA+AGG - chr1.3:3578153-3578172 None:intergenic 15.0%
!! TATATATGAAAATGACAAAA+GGG - chr1.3:3578152-3578171 None:intergenic 15.0%
!!! GTTTATTAGTTAATATCTTT+TGG + chr1.3:3575650-3575669 MS.gene043994:intron 15.0%
!!! TCTTAGTATTTTTAATTCTA+CGG + chr1.3:3576696-3576715 MS.gene043994:intron 15.0%
!!! TTAAATATTGATTATAGACA+TGG + chr1.3:3577470-3577489 MS.gene043994:intron 15.0%
!!! TTTCAAACTTTTATTATAGT+AGG - chr1.3:3575850-3575869 None:intergenic 15.0%
!!! TTTTTTAAAAAAAGTTGCTT+TGG + chr1.3:3574589-3574608 MS.gene043994:intron 15.0%
!! ATAAGTTTATATGTTTGTAG+AGG + chr1.3:3575293-3575312 MS.gene043994:intron 20.0%
!! ATAATTTAATGTGCATGTAA+TGG - chr1.3:3577839-3577858 None:intergenic 20.0%
!! ATGAAAACATATTGTGATTT+CGG + chr1.3:3575234-3575253 MS.gene043994:intron 20.0%
!! CAAACATATAAACTTATGTT+CGG - chr1.3:3575290-3575309 None:intergenic 20.0%
!! TAGCAAAAGTAGTATATTTA+GGG + chr1.3:3576241-3576260 MS.gene043994:intron 20.0%
!! TATATATTAAGAAAAGTAGC+CGG + chr1.3:3578166-3578185 MS.gene043994:intron 20.0%
!!! AAATTTTTAGAATTTGGGTT+GGG - chr1.3:3575329-3575348 None:intergenic 20.0%
!!! AACAATTATGTTTTTATTCC+AGG + chr1.3:3576557-3576576 MS.gene043994:intron 20.0%
!!! ATAAGGAATATCTATGTTTT+CGG + chr1.3:3577959-3577978 MS.gene043994:CDS 20.0%
!!! ATGATTTTATGCTCTATTTT+TGG + chr1.3:3577630-3577649 MS.gene043994:CDS 20.0%
!!! ATTAAACTTTTTTTCCAAAC+AGG + chr1.3:3576483-3576502 MS.gene043994:intron 20.0%
!!! CTTATGTATAAGCTATTTTT+AGG - chr1.3:3576455-3576474 None:intergenic 20.0%
!!! GTAATTGTTGTTTTTTGTAA+CGG + chr1.3:3574935-3574954 MS.gene043994:intron 20.0%
! AAAAAATGTGAATTTGCCAA+TGG - chr1.3:3577402-3577421 None:intergenic 25.0%
! AAACTCATAAGTGAATGTTT+CGG - chr1.3:3575985-3576004 None:intergenic 25.0%
! AAATTTACCTGAAATAGACA+TGG - chr1.3:3577733-3577752 None:intergenic 25.0%
! AACTGATGATCTAATTAATC+TGG + chr1.3:3576986-3577005 MS.gene043994:intron 25.0%
! ACAATAACAACAACAAAATC+AGG - chr1.3:3575014-3575033 None:intergenic 25.0%
! ATATACGAAATCAACCAAAA+CGG - chr1.3:3578235-3578254 None:intergenic 25.0%
! ATCAACAATAATGGTAGTAT+AGG - chr1.3:3576954-3576973 None:intergenic 25.0%
! ATTACACTTCAATTCTTGTT+TGG + chr1.3:3577661-3577680 MS.gene043994:intron 25.0%
! GAAAACATAGATATTCCTTA+TGG - chr1.3:3577960-3577979 None:intergenic 25.0%
! GATAATTGTAGTGAAAATGT+CGG + chr1.3:3577549-3577568 MS.gene043994:intron 25.0%
! GATAGAGAGATAATTGTATA+AGG - chr1.3:3577887-3577906 None:intergenic 25.0%
! GTAGCAAAAGTAGTATATTT+AGG + chr1.3:3576240-3576259 MS.gene043994:intron 25.0%
! GTCTCTCATTATATGAAATA+AGG + chr1.3:3575263-3575282 MS.gene043994:intron 25.0%
! TAAGTAACATTTAAGTGCAA+TGG - chr1.3:3577693-3577712 None:intergenic 25.0%
! TACACAATTAGAACAATTCA+AGG + chr1.3:3575502-3575521 MS.gene043994:CDS 25.0%
! TAGGAATATATTCAGACAAA+CGG - chr1.3:3578478-3578497 None:intergenic 25.0%
! TATAGTAGGTAATTTATTCG+TGG - chr1.3:3575836-3575855 None:intergenic 25.0%
! TATTTAACCAAATAAAACCC+AGG - chr1.3:3577457-3577476 None:intergenic 25.0%
! TTGCAAATAACAATTCCATA+AGG + chr1.3:3577942-3577961 MS.gene043994:CDS 25.0%
!! ACTTATTTGAGTCTTTTCTT+TGG - chr1.3:3576175-3576194 None:intergenic 25.0%
!! ATGTCTATTTCAGGTAAATT+TGG + chr1.3:3577732-3577751 MS.gene043994:intron 25.0%
!! ATGTTACTAAAATACCGTTT+TGG + chr1.3:3578218-3578237 MS.gene043994:intron 25.0%
!! CTTGTAACTTTTGTGATATA+GGG + chr1.3:3577196-3577215 MS.gene043994:intron 25.0%
!! TAGTATATTTAGGGTCTATT+TGG + chr1.3:3576250-3576269 MS.gene043994:intron 25.0%
!! TTGAATCACCAATTTTATGT+TGG - chr1.3:3575440-3575459 None:intergenic 25.0%
!! TTTCTCTCTTTATCATCTTT+TGG + chr1.3:3575682-3575701 MS.gene043994:intron 25.0%
!!! AATTTTTAGAATTTGGGTTG+GGG - chr1.3:3575328-3575347 None:intergenic 25.0%
!!! ATGTTAGTATTGCTAGTTTT+TGG + chr1.3:3574961-3574980 MS.gene043994:intron 25.0%
!!! GAAATTTTTAGAATTTGGGT+TGG - chr1.3:3575330-3575349 None:intergenic 25.0%
!!! GCTATATACTGTGTTTTATT+CGG + chr1.3:3577792-3577811 MS.gene043994:CDS 25.0%
!!! TTTTTTTCTCTTTCTTTACC+AGG + chr1.3:3575711-3575730 MS.gene043994:intron 25.0%
AACTTGGAACAGTTAAATTG+AGG - chr1.3:3576510-3576529 None:intergenic 30.0%
AAGTTTCTACATGTCATATC+TGG - chr1.3:3576765-3576784 None:intergenic 30.0%
AATACGCTGAAAACAACTTA+TGG - chr1.3:3576358-3576377 None:intergenic 30.0%
AATAGACACGATAAATACAC+CGG - chr1.3:3578188-3578207 None:intergenic 30.0%
ACAAAAGGGACTTGTAAAAA+GGG - chr1.3:3578138-3578157 None:intergenic 30.0%
AGTATATAGCAGCGAATATT+GGG - chr1.3:3577782-3577801 None:intergenic 30.0%
AGTTTATATGTTTGTAGAGG+TGG + chr1.3:3575296-3575315 MS.gene043994:intron 30.0%
ATATCTTCCTTGGATATAGT+AGG + chr1.3:3575551-3575570 MS.gene043994:CDS 30.0%
ATTTAATGTGCATGTAATGG+TGG - chr1.3:3577836-3577855 None:intergenic 30.0%
CCTATATCACAAAAGTTACA+AGG - chr1.3:3577198-3577217 None:intergenic 30.0%
GATCACTTGATGAAAAAGAT+TGG + chr1.3:3574883-3574902 MS.gene043994:intron 30.0%
GTGTTCATGACAAAATATTG+TGG - chr1.3:3578013-3578032 None:intergenic 30.0%
TAACAACGGATCAACAATAA+TGG - chr1.3:3576963-3576982 None:intergenic 30.0%
TCAGAAAGAGAATTTGAACT+TGG - chr1.3:3576526-3576545 None:intergenic 30.0%
TGCTTTGTCCAACATAAAAT+TGG + chr1.3:3575429-3575448 MS.gene043994:intron 30.0%
TTTAATGTAGCTACATGTGT+CGG + chr1.3:3576806-3576825 MS.gene043994:intron 30.0%
! AAATTTTGAATGCAGTCAAC+CGG + chr1.3:3577023-3577042 MS.gene043994:intron 30.0%
! AATTTTACAGCTTCATTCTC+TGG + chr1.3:3576905-3576924 MS.gene043994:intron 30.0%
! ACAACAACCTTTTACATTTC+CGG + chr1.3:3576020-3576039 MS.gene043994:intron 30.0%
! CCTTGTAACTTTTGTGATAT+AGG + chr1.3:3577195-3577214 MS.gene043994:intron 30.0%
! GATCATCAGTTTGATAACAA+CGG - chr1.3:3576977-3576996 None:intergenic 30.0%
! GATTTTTCCATGTCTATTTC+AGG + chr1.3:3577723-3577742 MS.gene043994:intron 30.0%
! TCAGAATTTTGGACTTTCAA+GGG + chr1.3:3574285-3574304 MS.gene043994:CDS 30.0%
! TCTTTTGTCAATATCTTCCT+TGG + chr1.3:3575541-3575560 MS.gene043994:CDS 30.0%
! TTATGTTTAGTGTTCTGAGT+AGG + chr1.3:3577311-3577330 MS.gene043994:intron 30.0%
!! ACATGACTAGCTTTGAATAT+GGG - chr1.3:3576616-3576635 None:intergenic 30.0%
!! TATTGTTTTGTAGCACGATA+AGG + chr1.3:3575028-3575047 MS.gene043994:intron 30.0%
!!! GTATTGCTAGTTTTTGGTAA+TGG + chr1.3:3574967-3574986 MS.gene043994:intron 30.0%
AAAAGATACTAACGCCATGA+AGG - chr1.3:3574370-3574389 None:intergenic 35.0%
AGTTAAATTGAGGTCCTGTT+TGG - chr1.3:3576500-3576519 None:intergenic 35.0%
ATATATTCAGACAAACGGAG+AGG - chr1.3:3578473-3578492 None:intergenic 35.0%
ATCACTTGCTTTCTATCTAC+CGG + chr1.3:3575142-3575161 MS.gene043994:CDS 35.0%
CAACTGTGGCAATAATAGTT+GGG + chr1.3:3578330-3578349 MS.gene043994:CDS 35.0%
CAATGGTATAACTAGACACT+AGG - chr1.3:3577385-3577404 None:intergenic 35.0%
CAGACATAAACAACAATGTC+TGG - chr1.3:3575064-3575083 None:intergenic 35.0%
CAGTATATAGCAGCGAATAT+TGG - chr1.3:3577783-3577802 None:intergenic 35.0%
CTAGTGTCTAGTTATACCAT+TGG + chr1.3:3577383-3577402 MS.gene043994:intron 35.0%
CTTGAAAGTCCAAAATTCTG+AGG - chr1.3:3574286-3574305 None:intergenic 35.0%
GAAAACAACTTATGGACATG+AGG - chr1.3:3576350-3576369 None:intergenic 35.0%
GACAAAAGGGACTTGTAAAA+AGG - chr1.3:3578139-3578158 None:intergenic 35.0%
TATCTGCATTGCCGTTATTT+GGG + chr1.3:3576107-3576126 MS.gene043994:CDS 35.0%
TATGTAGCACTTCAGATCAA+AGG - chr1.3:3576867-3576886 None:intergenic 35.0%
TCAAAGCTAGTCATGTCTTT+GGG + chr1.3:3576620-3576639 MS.gene043994:CDS 35.0%
TCATTTATGATCGACATCAC+CGG - chr1.3:3575164-3575183 None:intergenic 35.0%
TTATCTGCATTGCCGTTATT+TGG + chr1.3:3576106-3576125 MS.gene043994:CDS 35.0%
TTCAAAGCTAGTCATGTCTT+TGG + chr1.3:3576619-3576638 MS.gene043994:CDS 35.0%
! CAGAATTTTGGACTTTCAAG+GGG + chr1.3:3574286-3574305 MS.gene043994:CDS 35.0%
! CTCAGAATTTTGGACTTTCA+AGG + chr1.3:3574284-3574303 MS.gene043994:CDS 35.0%
!! ACTACTTTTGCTACATACCA+TGG - chr1.3:3576234-3576253 None:intergenic 35.0%
!! ATGACTAGCTTTGAATATGG+GGG - chr1.3:3576614-3576633 None:intergenic 35.0%
!! CAGACATTGTTGTTTATGTC+TGG + chr1.3:3575062-3575081 MS.gene043994:CDS 35.0%
!! CATGACTAGCTTTGAATATG+GGG - chr1.3:3576615-3576634 None:intergenic 35.0%
!! GACATGACTAGCTTTGAATA+TGG - chr1.3:3576617-3576636 None:intergenic 35.0%
!! TGTGTTTTATTCGGCATTGT+CGG + chr1.3:3577801-3577820 MS.gene043994:CDS 35.0%
!!! GCTAGTTTTTGGTAATGGTA+GGG + chr1.3:3574972-3574991 MS.gene043994:intron 35.0%
!!! TGCTAGTTTTTGGTAATGGT+AGG + chr1.3:3574971-3574990 MS.gene043994:intron 35.0%
AACATGGAAAGGGTTATAGG+TGG + chr1.3:3577338-3577357 MS.gene043994:intron 40.0%
AACGCCATGAAGGATTTGAA+TGG - chr1.3:3574360-3574379 None:intergenic 40.0%
AACTTTCGCATCTGAGAATC+AGG + chr1.3:3575196-3575215 MS.gene043994:CDS 40.0%
AAGCAACCTTGTACCTCAAA+TGG + chr1.3:3574834-3574853 MS.gene043994:CDS 40.0%
AAGCTATCCTAGAGAGCTTA+TGG - chr1.3:3576382-3576401 None:intergenic 40.0%
AATAAAACCCAGGTTGTGCA+TGG - chr1.3:3577447-3577466 None:intergenic 40.0%
AATTGAGATCCCGAGAAACA+AGG - chr1.3:3577990-3578009 None:intergenic 40.0%
ACCACAGGTACAATGACAAT+GGG - chr1.3:3575746-3575765 None:intergenic 40.0%
ACGTGTGGTTTATGCTTGTT+TGG + chr1.3:3575389-3575408 MS.gene043994:intron 40.0%
ACTATTATTGCCACAGTTGG+TGG - chr1.3:3578329-3578348 None:intergenic 40.0%
AGCAACCTTGTACCTCAAAT+GGG + chr1.3:3574835-3574854 MS.gene043994:CDS 40.0%
AGGCTCATCATATACTTGAG+AGG + chr1.3:3576073-3576092 MS.gene043994:CDS 40.0%
AGTAGGAGTGAACATGGAAA+GGG + chr1.3:3577328-3577347 MS.gene043994:intron 40.0%
AGTATTGTATGCACCAGCAA+CGG - chr1.3:3576151-3576170 None:intergenic 40.0%
AGTGAAAATGTCGGTCTACT+CGG + chr1.3:3577558-3577577 MS.gene043994:intron 40.0%
ATGGAAATAGCAGTGGAGTA+TGG - chr1.3:3577428-3577447 None:intergenic 40.0%
ATGTTCCATACCCATTTCAG+TGG + chr1.3:3576584-3576603 MS.gene043994:CDS 40.0%
CCAACTATTATTGCCACAGT+TGG - chr1.3:3578332-3578351 None:intergenic 40.0%
CCAACTGTGGCAATAATAGT+TGG + chr1.3:3578329-3578348 MS.gene043994:CDS 40.0%
CCTTGGATATAGTAGGACAT+GGG + chr1.3:3575558-3575577 MS.gene043994:CDS 40.0%
CGTATTTCCATAAGCTCTCT+AGG + chr1.3:3576372-3576391 MS.gene043994:intron 40.0%
CTTGGATATAGTAGGACATG+GGG + chr1.3:3575559-3575578 MS.gene043994:CDS 40.0%
GAGAGGAATTGATGCGAAAA+AGG - chr1.3:3577760-3577779 None:intergenic 40.0%
GATTCTCAGATGCGAAAGTT+TGG - chr1.3:3575196-3575215 None:intergenic 40.0%
GCATCCATTCAAATCCTTCA+TGG + chr1.3:3574353-3574372 MS.gene043994:CDS 40.0%
GTCGCACAAATACTTACCAT+TGG - chr1.3:3575806-3575825 None:intergenic 40.0%
GTGAACATGGAAAGGGTTAT+AGG + chr1.3:3577335-3577354 MS.gene043994:intron 40.0%
GTTCCTTTCCAGAAAAGGAA+GGG + chr1.3:3578416-3578435 MS.gene043994:CDS 40.0%
GTTGTGTTACAATCAGCAGA+AGG - chr1.3:3575946-3575965 None:intergenic 40.0%
TACCACAGGTACAATGACAA+TGG - chr1.3:3575747-3575766 None:intergenic 40.0%
TACTGACATAAGCACTTGTG+TGG + chr1.3:3576294-3576313 MS.gene043994:intron 40.0%
TATGACACTTGCACTTGTAG+AGG + chr1.3:3575473-3575492 MS.gene043994:intron 40.0%
TATGATGAGCCTTAGCATGA+AGG - chr1.3:3576065-3576084 None:intergenic 40.0%
TCAACACATTGCTTCAGACT+TGG + chr1.3:3575087-3575106 MS.gene043994:CDS 40.0%
TCCTTGGATATAGTAGGACA+TGG + chr1.3:3575557-3575576 MS.gene043994:CDS 40.0%
TGGGTATGGAACATAAATCC+TGG - chr1.3:3576578-3576597 None:intergenic 40.0%
TGTTCCATACCCATTTCAGT+GGG + chr1.3:3576585-3576604 MS.gene043994:CDS 40.0%
TTGCCACACAAAACAAGACA+AGG - chr1.3:3578270-3578289 None:intergenic 40.0%
! ACATTGCTTCAGACTTGGTT+TGG + chr1.3:3575092-3575111 MS.gene043994:CDS 40.0%
! GAAAGTCCAAAATTCTGAGG+TGG - chr1.3:3574283-3574302 None:intergenic 40.0%
! TAACATCTCCCTTCCTTTTC+TGG - chr1.3:3578427-3578446 None:intergenic 40.0%
! TCTGCTGATTGTAACACAAC+AGG + chr1.3:3575946-3575965 MS.gene043994:CDS 40.0%
! TTCGGCTTAACCTTGTTTCT+CGG + chr1.3:3577977-3577996 MS.gene043994:CDS 40.0%
! TTTGAAGCACCTTCATGCTA+AGG + chr1.3:3576053-3576072 MS.gene043994:CDS 40.0%
! TTTTATTCGGCATTGTCGGT+AGG + chr1.3:3577805-3577824 MS.gene043994:intron 40.0%
!! AGTCATGTCTTTGGGATGAT+GGG + chr1.3:3576628-3576647 MS.gene043994:CDS 40.0%
!! AGTTAGAACCAATGGTGGAT+GGG + chr1.3:3578054-3578073 MS.gene043994:CDS 40.0%
!! AGTTGGTGGAGATGAGAATA+TGG - chr1.3:3578315-3578334 None:intergenic 40.0%
!! ATGCTGATTGAAGGCATTTG+TGG + chr1.3:3577226-3577245 MS.gene043994:CDS 40.0%
!! TAGTCATGTCTTTGGGATGA+TGG + chr1.3:3576627-3576646 MS.gene043994:CDS 40.0%
!! TTCAGACTTGGTTTGGTTCA+AGG + chr1.3:3575099-3575118 MS.gene043994:CDS 40.0%
!!! GTACCTTGTCTTGTTTTGTG+TGG + chr1.3:3578264-3578283 MS.gene043994:intron 40.0%
!!! TGCACAACCTGGGTTTTATT+TGG + chr1.3:3577447-3577466 MS.gene043994:intron 40.0%
AAACAAACAGCTGTGGACAG+AGG + chr1.3:3578380-3578399 MS.gene043994:CDS 45.0%
AACCTTGTACCTCAAATGGG+TGG + chr1.3:3574838-3574857 MS.gene043994:CDS 45.0%
ACCTTGTACCTCAAATGGGT+GGG + chr1.3:3574839-3574858 MS.gene043994:CDS 45.0%
AGAGTGGTGCAAATGTCATG+TGG + chr1.3:3577603-3577622 MS.gene043994:CDS 45.0%
AGTGATCCACCCATAATCAC+CGG - chr1.3:3575128-3575147 None:intergenic 45.0%
ATAGCAGCGAATATTGGGAG+AGG - chr1.3:3577777-3577796 None:intergenic 45.0%
ATTCTCATCTCCACCAACTG+TGG + chr1.3:3578316-3578335 MS.gene043994:CDS 45.0%
CAGCACTACATTGTGATGCT+TGG + chr1.3:3574793-3574812 MS.gene043994:CDS 45.0%
CATGGTCCAGTTAGAACCAA+TGG + chr1.3:3578046-3578065 MS.gene043994:CDS 45.0%
CATTGTACCTGTGGTATGTG+TGG + chr1.3:3575751-3575770 MS.gene043994:CDS 45.0%
CCCATGTCCTACTATATCCA+AGG - chr1.3:3575561-3575580 None:intergenic 45.0%
CTTGCAGATTGTGTGCAGAT+CGG + chr1.3:3575908-3575927 MS.gene043994:CDS 45.0%
GACAATGGGACTAAACAACC+TGG - chr1.3:3575732-3575751 None:intergenic 45.0%
GAGTAGGAGTGAACATGGAA+AGG + chr1.3:3577327-3577346 MS.gene043994:intron 45.0%
GGACTTGTAAAAAGGGACTG+AGG - chr1.3:3578131-3578150 None:intergenic 45.0%
GGTTCCTTTCCAGAAAAGGA+AGG + chr1.3:3578415-3578434 MS.gene043994:CDS 45.0%
GTCAACTGAATTGCTACGTG+TGG + chr1.3:3575374-3575393 MS.gene043994:intron 45.0%
GTTCCATACCCATTTCAGTG+GGG + chr1.3:3576586-3576605 MS.gene043994:CDS 45.0%
GTTGTGCATGGAAATAGCAG+TGG - chr1.3:3577435-3577454 None:intergenic 45.0%
TACTCGGTCTCACACACATA+GGG + chr1.3:3577574-3577593 MS.gene043994:CDS 45.0%
TCAAGGCTTCCGGTGATTAT+GGG + chr1.3:3575116-3575135 MS.gene043994:CDS 45.0%
TCCCATTGTCATTGTACCTG+TGG + chr1.3:3575742-3575761 MS.gene043994:CDS 45.0%
TCTGTCCACAGCTGTTTGTT+TGG - chr1.3:3578381-3578400 None:intergenic 45.0%
TGAAGCCAAACAAACAGCTG+TGG + chr1.3:3578373-3578392 MS.gene043994:CDS 45.0%
TGCAGGACCGGAAATGTAAA+AGG - chr1.3:3576030-3576049 None:intergenic 45.0%
TGCTTCAAATACTGCAGGAC+CGG - chr1.3:3576042-3576061 None:intergenic 45.0%
TGGAAAGGGTTATAGGTGGA+AGG + chr1.3:3577342-3577361 MS.gene043994:intron 45.0%
TGTCGGACACTAAGACATGT+TGG + chr1.3:3576829-3576848 MS.gene043994:intron 45.0%
TTCAAGGCTTCCGGTGATTA+TGG + chr1.3:3575115-3575134 MS.gene043994:CDS 45.0%
TTGCTACATACCATGGTGCA+CGG - chr1.3:3576227-3576246 None:intergenic 45.0%
! ACAATCAGCAGAAGGAGCAT+AGG - chr1.3:3575938-3575957 None:intergenic 45.0%
! AGCACTTGTCACTTCTTTCG+AGG + chr1.3:3576654-3576673 MS.gene043994:CDS 45.0%
! CAGTTAGAACCAATGGTGGA+TGG + chr1.3:3578053-3578072 MS.gene043994:CDS 45.0%
! CTTGGTGGTTATCTGTGTCA+TGG - chr1.3:3574225-3574244 None:intergenic 45.0%
! GCTATTTCCATGCACAACCT+GGG + chr1.3:3577437-3577456 MS.gene043994:intron 45.0%
! GGCATTAGCATGCTGATTGA+AGG + chr1.3:3577217-3577236 MS.gene043994:CDS 45.0%
! GGCATTTGTGGCTCTATTGT+TGG + chr1.3:3577238-3577257 MS.gene043994:CDS 45.0%
! GTTCTGAGTAGGAGTGAACA+TGG + chr1.3:3577322-3577341 MS.gene043994:intron 45.0%
! TCGGCTTAACCTTGTTTCTC+GGG + chr1.3:3577978-3577997 MS.gene043994:CDS 45.0%
!! AGTCCAAAATTCTGAGGTGG+TGG - chr1.3:3574280-3574299 None:intergenic 45.0%
!! CATCCACCATTGGTTCTAAC+TGG - chr1.3:3578055-3578074 None:intergenic 45.0%
!! GAAGGTGCTTCAAATACTGC+AGG - chr1.3:3576047-3576066 None:intergenic 45.0%
!! TCTCCCTTCCTTTTCTGGAA+AGG - chr1.3:3578422-3578441 None:intergenic 45.0%
!! TGCTATTTCCATGCACAACC+TGG + chr1.3:3577436-3577455 MS.gene043994:intron 45.0%
!! TTGGTTTGGTTCAAGGCTTC+CGG + chr1.3:3575106-3575125 MS.gene043994:CDS 45.0%
!!! TGCAGCTGAAGCATTGCTTT+TGG + chr1.3:3574765-3574784 MS.gene043994:intron 45.0%
AACACTGCACCTGATGGTCA+TGG + chr1.3:3578028-3578047 MS.gene043994:CDS 50.0%
ACACATAGGGAGCAGAAGAG+TGG + chr1.3:3577587-3577606 MS.gene043994:CDS 50.0%
ACATGACTCCCACCCATTTG+AGG - chr1.3:3574850-3574869 None:intergenic 50.0%
ACCAGCAACGGTAAGGATAG+CGG - chr1.3:3576139-3576158 None:intergenic 50.0%
AGCGGCGAAAGCCCAAATAA+CGG - chr1.3:3576121-3576140 None:intergenic 50.0%
AGTCCAACCACACATACCAC+AGG - chr1.3:3575761-3575780 None:intergenic 50.0%
CACACAATCTGCAAGCTGCA+TGG - chr1.3:3575903-3575922 None:intergenic 50.0%
CTAACTGGACCATGACCATC+AGG - chr1.3:3578040-3578059 None:intergenic 50.0%
CTACTCGGTCTCACACACAT+AGG + chr1.3:3577573-3577592 MS.gene043994:CDS 50.0%
GGTCCAGTTAGAACCAATGG+TGG + chr1.3:3578049-3578068 MS.gene043994:CDS 50.0%
GTACCCCACTGAAATGGGTA+TGG - chr1.3:3576592-3576611 None:intergenic 50.0%
GTACCTGTGGTATGTGTGGT+TGG + chr1.3:3575755-3575774 MS.gene043994:CDS 50.0%
GTCATGAACACTGCACCTGA+TGG + chr1.3:3578022-3578041 MS.gene043994:CDS 50.0%
GTGACTTACCCATCCACCAT+TGG - chr1.3:3578065-3578084 None:intergenic 50.0%
GTGGTATGTGTGGTTGGACT+CGG + chr1.3:3575761-3575780 MS.gene043994:CDS 50.0%
TATCTCCTGCAGCTGCTACT+GGG + chr1.3:3577903-3577922 MS.gene043994:intron 50.0%
TGCTACATACCATGGTGCAC+GGG - chr1.3:3576226-3576245 None:intergenic 50.0%
TGTATGCACCAGCAACGGTA+AGG - chr1.3:3576146-3576165 None:intergenic 50.0%
! GGACCACCACCTCAGAATTT+TGG + chr1.3:3574274-3574293 MS.gene043994:CDS 50.0%
! GGTGGGTTCCTTTCCAGAAA+AGG + chr1.3:3578411-3578430 MS.gene043994:CDS 50.0%
! GTAGCTACATGTGTCGGTGT+CGG + chr1.3:3576812-3576831 MS.gene043994:intron 50.0%
! TCCCACCCATTTGAGGTACA+AGG - chr1.3:3574843-3574862 None:intergenic 50.0%
! TTCTGGAAAGGAACCCACCA+TGG - chr1.3:3578410-3578429 None:intergenic 50.0%
!! AAATTCTGAGGTGGTGGTCC+CGG - chr1.3:3574274-3574293 None:intergenic 50.0%
AGCTGAAGAAGCTGTTCCGC+TGG - chr1.3:3574325-3574344 None:intergenic 55.0%
AGGCTTCCGGTGATTATGGG+TGG + chr1.3:3575119-3575138 MS.gene043994:CDS 55.0%
CATGTGCTCAGCCGAAGCAT+CGG + chr1.3:3577095-3577114 MS.gene043994:CDS 55.0%
CTATCTCCTGCAGCTGCTAC+TGG + chr1.3:3577902-3577921 MS.gene043994:intron 55.0%
CTGTGGACAGAGGACTTCCA+TGG + chr1.3:3578390-3578409 MS.gene043994:CDS 55.0%
GACTTTCAAGGGGTCCCACT+TGG + chr1.3:3574296-3574315 MS.gene043994:CDS 55.0%
GGACAGAGGACTTCCATGGT+GGG + chr1.3:3578394-3578413 MS.gene043994:CDS 55.0%
GTGGCTGTTTGAGAGAGCTC+AGG + chr1.3:3576313-3576332 MS.gene043994:intron 55.0%
TCACCTGAAGCCCGATGCTT+CGG - chr1.3:3577109-3577128 None:intergenic 55.0%
TGGACAGAGGACTTCCATGG+TGG + chr1.3:3578393-3578412 MS.gene043994:CDS 55.0%
TGTTCCGCTGGAGTCCAAGT+GGG - chr1.3:3574313-3574332 None:intergenic 55.0%
! ATGTGCTCAGCCGAAGCATC+GGG + chr1.3:3577096-3577115 MS.gene043994:CDS 55.0%
!! ATGGGGGTACCCCACTGAAA+TGG - chr1.3:3576598-3576617 None:intergenic 55.0%
!! TGGGGGTACCCCACTGAAAT+GGG - chr1.3:3576597-3576616 None:intergenic 55.0%
ACCATGGTGCACGGGTCAGA+AGG - chr1.3:3576218-3576237 None:intergenic 60.0%
ACCTTCTGACCCGTGCACCA+TGG + chr1.3:3576214-3576233 MS.gene043994:CDS 60.0%
CCAAGCACCACCGTCAGTTC+AGG + chr1.3:3574240-3574259 MS.gene043994:CDS 60.0%
CCTGAACTGACGGTGGTGCT+TGG - chr1.3:3574243-3574262 None:intergenic 60.0%
CTGTTCCGCTGGAGTCCAAG+TGG - chr1.3:3574314-3574333 None:intergenic 60.0%
CTTCGGCTGAGCACATGTGC+CGG - chr1.3:3577092-3577111 None:intergenic 60.0%
GAACTGACGGTGGTGCTTGG+TGG - chr1.3:3574240-3574259 None:intergenic 60.0%
GAGATCCCAGTAGCAGCTGC+AGG - chr1.3:3577911-3577930 None:intergenic 60.0%
GCCGCTATCCTTACCGTTGC+TGG + chr1.3:3576135-3576154 MS.gene043994:CDS 60.0%
GTACTTTCTTCGCCGCAGCC+AGG + chr1.3:3577045-3577064 MS.gene043994:CDS 60.0%
GTTCGCGAGGGGCTTTCCAA+TGG + chr1.3:3575787-3575806 MS.gene043994:CDS 60.0%
TGCACCAGAAAGCCTGGCTG+CGG - chr1.3:3577060-3577079 None:intergenic 60.0%
TTCTGGTGCAACACCCCCTC+CGG + chr1.3:3577070-3577089 MS.gene043994:CDS 60.0%
! GGCTGCGGCGAAGAAAGTAC+CGG - chr1.3:3577045-3577064 None:intergenic 60.0%
! GGGTGTTGCACCAGAAAGCC+TGG - chr1.3:3577066-3577085 None:intergenic 60.0%
! TGGACTCGGTCTGTTCGCGA+GGG + chr1.3:3575775-3575794 MS.gene043994:CDS 60.0%
! TTGGACTCGGTCTGTTCGCG+AGG + chr1.3:3575774-3575793 MS.gene043994:CDS 60.0%
CTGAGCACATGTGCCGGAGG+GGG - chr1.3:3577086-3577105 None:intergenic 65.0%
GCTGAGCACATGTGCCGGAG+GGG - chr1.3:3577087-3577106 None:intergenic 65.0%
GGCTGAGCACATGTGCCGGA+GGG - chr1.3:3577088-3577107 None:intergenic 65.0%
GGGTCCCACTTGGACTCCAG+CGG + chr1.3:3574306-3574325 MS.gene043994:CDS 65.0%
TTCGCCGCAGCCAGGCTTTC+TGG + chr1.3:3577053-3577072 MS.gene043994:CDS 65.0%
! GGACTCGGTCTGTTCGCGAG+GGG + chr1.3:3575776-3575795 MS.gene043994:CDS 65.0%
! GGTGGCGGTGCCTGAACTGA+CGG - chr1.3:3574253-3574272 None:intergenic 65.0%
! GTCAGTTCAGGCACCGCCAC+CGG + chr1.3:3574252-3574271 MS.gene043994:CDS 65.0%
! TCAGTTCAGGCACCGCCACC+GGG + chr1.3:3574253-3574272 MS.gene043994:CDS 65.0%
!! CAGCCGAAGCATCGGGCTTC+AGG + chr1.3:3577103-3577122 MS.gene043994:CDS 65.0%
!! TTCTGAGGTGGTGGTCCCGG+TGG - chr1.3:3574271-3574290 None:intergenic 65.0%
CGGCTGAGCACATGTGCCGG+AGG - chr1.3:3577089-3577108 None:intergenic 70.0%
GGCGGTGCCTGAACTGACGG+TGG - chr1.3:3574250-3574269 None:intergenic 70.0%
! TGAGGTGGTGGTCCCGGTGG+CGG - chr1.3:3574268-3574287 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3574217 3578511 3574217 ID=MS.gene043994
chr1.3 mRNA 3574217 3578511 3574217 ID=MS.gene043994.t1;Parent=MS.gene043994
chr1.3 exon 3574217 3574376 3574217 ID=MS.gene043994.t1.exon1;Parent=MS.gene043994.t1
chr1.3 CDS 3574217 3574376 3574217 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3574770 3574867 3574770 ID=MS.gene043994.t1.exon2;Parent=MS.gene043994.t1
chr1.3 CDS 3574770 3574867 3574770 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3575041 3575217 3575041 ID=MS.gene043994.t1.exon3;Parent=MS.gene043994.t1
chr1.3 CDS 3575041 3575217 3575041 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3575493 3575593 3575493 ID=MS.gene043994.t1.exon4;Parent=MS.gene043994.t1
chr1.3 CDS 3575493 3575593 3575493 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3575733 3575808 3575733 ID=MS.gene043994.t1.exon5;Parent=MS.gene043994.t1
chr1.3 CDS 3575733 3575808 3575733 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3575908 3575967 3575908 ID=MS.gene043994.t1.exon6;Parent=MS.gene043994.t1
chr1.3 CDS 3575908 3575967 3575908 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3576051 3576235 3576051 ID=MS.gene043994.t1.exon7;Parent=MS.gene043994.t1
chr1.3 CDS 3576051 3576235 3576051 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3576579 3576675 3576579 ID=MS.gene043994.t1.exon8;Parent=MS.gene043994.t1
chr1.3 CDS 3576579 3576675 3576579 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3577038 3577124 3577038 ID=MS.gene043994.t1.exon9;Parent=MS.gene043994.t1
chr1.3 CDS 3577038 3577124 3577038 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3577217 3577275 3577217 ID=MS.gene043994.t1.exon10;Parent=MS.gene043994.t1
chr1.3 CDS 3577217 3577275 3577217 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3577560 3577651 3577560 ID=MS.gene043994.t1.exon11;Parent=MS.gene043994.t1
chr1.3 CDS 3577560 3577651 3577560 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3577745 3577822 3577745 ID=MS.gene043994.t1.exon12;Parent=MS.gene043994.t1
chr1.3 CDS 3577745 3577822 3577745 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3577915 3578075 3577915 ID=MS.gene043994.t1.exon13;Parent=MS.gene043994.t1
chr1.3 CDS 3577915 3578075 3577915 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
chr1.3 exon 3578293 3578511 3578293 ID=MS.gene043994.t1.exon14;Parent=MS.gene043994.t1
chr1.3 CDS 3578293 3578511 3578293 ID=cds.MS.gene043994.t1;Parent=MS.gene043994.t1
Gene Sequence

>MS.gene043994

ATGGGCCATGACACAGATAACCACCAAGCACCACCGTCAGTTCAGGCACCGCCACCGGGACCACCACCTCAGAATTTTGGACTTTCAAGGGGTCCCACTTGGACTCCAGCGGAACAGCTTCTTCAGCTTCATTATTGCATCCATTCAAATCCTTCATGGCGTTAGTATCTTTTTCAATCTTTCAACTTGATTTGATTCTTCATTTTTTATGCCTTAACTTGTAAAAAAAAAATTATGCTTGATGTTAAAAGTAGTTGAGAATCTTATGTCAAAGAGTTGTTGTAATTTTTATTTTTTTAGTTCAGTTTAGTTTATTTGTTGATTATTATTTATTACTTTTTGTTAACTTTATTCTAGTTTGATTCTGTTTTTTTTTTTAAAAAAAGTTGCTTTGGATTTTGTTTTTGTCATTTGTATGAATCTTTTGTTAGATTCAGTATGTAAAAGTGAAGTGAAACAAGTTTTGATATTTTTTTTTATTTTTATTTTTTTGGGTTTGAAGTTAAAAAATTCATCTTTTGTTTACAACAATTTTTTATTTTTCATTTTGCAGCTGAAGCATTGCTTTTGGCTTTTCAGCACTACATTGTGATGCTTGGAACAACTGTTCTGATTGCAAGCAACCTTGTACCTCAAATGGGTGGGAGTCATGTAAGTATAAACTGAGATCACTTGATGAAAAAGATTGGTACTTGTTATGTATTTGTGTGATGAATCTGTAATTGTTGTTTTTTGTAACGGCAAATGTTAGTATTGCTAGTTTTTGGTAATGGTAGGGATCGAACGCTCAACGTCCTGATTTTGTTGTTGTTATTGTTTTGTAGCACGATAAGGCTTGTGTGATCCAGACATTGTTGTTTATGTCTGGTATCAACACATTGCTTCAGACTTGGTTTGGTTCAAGGCTTCCGGTGATTATGGGTGGATCACTTGCTTTCTATCTACCGGTGATGTCGATCATAAATGATTCAAATGACCAAACTTTCGCATCTGAGAATCAGGTTTGTTTATTTCAAAATGAAAACATATTGTGATTTCGGTTAAGAGTCTCTCATTATATGAAATAAGGTCCGAACATAAGTTTATATGTTTGTAGAGGTGGTTTTAGCCCCAACCCAAATTCTAAAAATTTCAATTTTTGATGTATTTATTTCTTTGTCAACTGAATTGCTACGTGTGGTTTATGCTTGTTTGGTTGTTTGTTAACTGAATTGCTTTGTCCAACATAAAATTGGTGATTCAAATCGCTAATCGATTATGACACTTGCACTTGTAGAGGTTTCGCTACACAATTAGAACAATTCAAGGATCTCTCATTGTTTCTTCTTTTGTCAATATCTTCCTTGGATATAGTAGGACATGGGGAAATTTAACAAAGTAAGTTCATGTCAATCTTCAATGTTAGTTTTATTTCACTATTAGTTAATTATTATGTTTATTAGTTAATATCTTTTGGTTAATTTTTTTTCTCTCTTTATCATCTTTTGGTTAATCTTTTTTTCTCTTTCTTTACCAGGTTGTTTAGTCCCATTGTCATTGTACCTGTGGTATGTGTGGTTGGACTCGGTCTGTTCGCGAGGGGCTTTCCAATGGTAAGTATTTGTGCGACGTCACATCCACGAATAAATTACCTACTATAATAAAAGTTTGAAATGGAAAGTTCATAAACTCAGTTATGTTCTTCCATGCAGCTTGCAGATTGTGTGCAGATCGGACTACCTATGCTCCTTCTGCTGATTGTAACACAACAGGTTTTATTTCTAATCCGAAACATTCACTTATGAGTTTTATTCTCTTATACTAACAACAACCTTTTACATTTCCGGTCCTGCAGTATTTGAAGCACCTTCATGCTAAGGCTCATCATATACTTGAGAGGTTTGCTTTACTTATCTGCATTGCCGTTATTTGGGCTTTCGCCGCTATCCTTACCGTTGCTGGTGCATACAATACTTCCAAAGAAAAGACTCAAATAAGTTGTCGCACAGATCGTTCGTACCTTCTGACCCGTGCACCATGGTATGTAGCAAAAGTAGTATATTTAGGGTCTATTTGGATTGACTTATGTCAGCTTAACTACTGACATAAGCACTTGTGTGGCTGTTTGAGAGAGCTCAGGAAAACAGTTTACCTCATGTCCATAAGTTGTTTTCAGCGTATTTCCATAAGCTCTCTAGGATAGCTTATGAAAATAGTTTAAAGCTTATATGAAAACAATTTGTTTTTATGTTATCTCCTAAAAATAGCTTATACATAAGCACTTTTAATTAAACTTTTTTTCCAAACAGGACCTCAATTTAACTGTTCCAAGTTCAAATTCTCTTTCTGAAATTTTATGATAACAATTATGTTTTTATTCCAGGATTTATGTTCCATACCCATTTCAGTGGGGTACCCCCATATTCAAAGCTAGTCATGTCTTTGGGATGATGGGAGCAGCACTTGTCACTTCTTTCGAGGTTTAGCAACTATTCCTTATTCTTAGTATTTTTAATTCTACGGATTGTTCTTATAATTTATATGCTATGAAGCGCTGACACATACACCAGATATGACATGTAGAAACTTATAATATAAGAATTAAAGTAATTTAATGTAGCTACATGTGTCGGTGTCGGACACTAAGACATGTTGGACACAAGACACACCTTTGATCTGAAGTGCTACATAGTTTATACGTTCATTCTCAATTTTACAGCTTCATTCTCTGGAAAATGATCTTAATTGCTTTAAGCCTATACTACCATTATTGTTGATCCGTTGTTATCAAACTGATGATCTAATTAATCTGGATCATTTTTTAATGAAATTTTGAATGCAGTCAACCGGTACTTTCTTCGCCGCAGCCAGGCTTTCTGGTGCAACACCCCCTCCGGCACATGTGCTCAGCCGAAGCATCGGGCTTCAGGTGAAGTTTAATCATCTCGCCATTTGAAGAATTAACTTAATTATTCTCTTACATTACAAAATCTTGATGTCCTTGTAACTTTTGTGATATAGGGCATTAGCATGCTGATTGAAGGCATTTGTGGCTCTATTGTTGGTACTACAGCATCTGTGTAAGAAAGCAATATTTTAACTACTTTTGTTTTGTTTATGTTTAGTGTTCTGAGTAGGAGTGAACATGGAAAGGGTTATAGGTGGAAGGAATAAAATTTAAGCGTACCTAGTGTCTAGTTATACCATTGGCAAATTCACATTTTTTGTGCCATACTCCACTGCTATTTCCATGCACAACCTGGGTTTTATTTGGTTAAATATTGATTATAGACATGGATCCATTGATTATTTGTTAAGAATTCTATATACGTGATAATCTCACTAATCTGTTTGATAATTGTAGTGAAAATGTCGGTCTACTCGGTCTCACACACATAGGGAGCAGAAGAGTGGTGCAAATGTCATGTGGTTTCATGATTTTATGCTCTATTTTTGGTACAATATATTACACTTCAATTCTTGTTTGGAGAGTTCCATTGCACTTAAATGTTACTTATGTAATTAATGATTTTTCCATGTCTATTTCAGGTAAATTTGGAGCCTTTTTCGCATCAATTCCTCTCCCAATATTCGCTGCTATATACTGTGTTTTATTCGGCATTGTCGGTAGGTGTTGCCACCATTACATGCACATTAAATTATTATAATTTTGACATGTAGATGCATACCTTATACAATTATCTCTCTATCTCCTGCAGCTGCTACTGGGATCTCATTTATACAGTTTGCAAATAACAATTCCATAAGGAATATCTATGTTTTCGGCTTAACCTTGTTTCTCGGGATCTCAATTCCACAATATTTTGTCATGAACACTGCACCTGATGGTCATGGTCCAGTTAGAACCAATGGTGGATGGGTAAGTCACTTATTAAGTCTTTAGAACATTAAACGATTTTATTCTTATACTACCTCAGTCCCTTTTTACAAGTCCCTTTTGTCATTTTCATATATATTAAGAAAAGTAGCCGGTGTATTTATCGTGTCTATTTTATGTATGAATGTTACTAAAATACCGTTTTGGTTGATTTCGTATATCTGATTTGTGTACCTTGTCTTGTTTTGTGTGGCAACAGTTTAATGACATATTGAACACCATATTCTCATCTCCACCAACTGTGGCAATAATAGTTGGGACAGTTCTTGACAACACACTTGAAGCCAAACAAACAGCTGTGGACAGAGGACTTCCATGGTGGGTTCCTTTCCAGAAAAGGAAGGGAGATGTTAGAAATGATGAATTTTATCGCTTTCCTCTCCGTTTGTCTGAATATATTCCTAGTAGATTTCTCTAG
Protein sequence

>MS.gene043994.t1

MGHDTDNHQAPPSVQAPPPGPPPQNFGLSRGPTWTPAEQLLQLHYCIHSNPSWPEALLLAFQHYIVMLGTTVLIASNLVPQMGGSHHDKACVIQTLLFMSGINTLLQTWFGSRLPVIMGGSLAFYLPVMSIINDSNDQTFASENQRFRYTIRTIQGSLIVSSFVNIFLGYSRTWGNLTKLFSPIVIVPVVCVVGLGLFARGFPMLADCVQIGLPMLLLLIVTQQYLKHLHAKAHHILERFALLICIAVIWAFAAILTVAGAYNTSKEKTQISCRTDRSYLLTRAPWIYVPYPFQWGTPIFKASHVFGMMGAALVTSFESTGTFFAAARLSGATPPPAHVLSRSIGLQGISMLIEGICGSIVGTTASVENVGLLGLTHIGSRRVVQMSCGFMILCSIFGKFGAFFASIPLPIFAAIYCVLFGIVAATGISFIQFANNNSIRNIYVFGLTLFLGISIPQYFVMNTAPDGHGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLEAKQTAVDRGLPWWVPFQKRKGDVRNDEFYRFPLRLSEYIPSRFL