AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044033

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044033.t1 MTR_1g019620 94.930 355 1 1 1 338 1 355 0.0 677
MS.gene044033.t1 MTR_1g016110 94.366 355 3 1 1 338 1 355 0.0 671
MS.gene044033.t1 MTR_1g016110 99.026 308 3 0 31 338 1 308 0.0 620
MS.gene044033.t1 MTR_1g070360 34.564 298 143 10 37 326 17 270 2.98e-42 148
MS.gene044033.t1 MTR_6g086600 39.444 180 104 3 38 217 173 347 1.55e-30 121
MS.gene044033.t1 MTR_6g086600 39.444 180 104 3 38 217 164 338 1.77e-30 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044033.t1 AT5G50960 73.988 346 72 2 1 328 1 346 0.0 525
MS.gene044033.t1 AT4G19540 42.487 193 101 5 37 226 38 223 2.29e-37 136
MS.gene044033.t1 AT3G24430 38.889 180 105 3 38 217 172 346 1.35e-30 122

Find 85 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTAAATTCAACATTTC+AGG 0.198831 1.2:-4008349 None:intergenic
CCTTCTAGGCCAAGCATCTT+TGG 0.224706 1.2:-4007848 None:intergenic
GGTGTATCTCTTGACCTTCT+AGG 0.281189 1.2:-4007862 None:intergenic
GTCTATGTTGAGTCTAATCT+TGG 0.283572 1.2:+4007908 MS.gene044033:CDS
AATCTTGGGGTCATGTCAAT+TGG 0.295181 1.2:+4007923 MS.gene044033:CDS
ATCCAGACGAAGCTGTTATA+TGG 0.325193 1.2:+4007960 MS.gene044033:CDS
TTTATGAAGATTACAGATAA+TGG 0.328286 1.2:+4008274 MS.gene044033:CDS
CTTCTAGGCCAAGCATCTTT+GGG 0.359162 1.2:-4007847 None:intergenic
CTAATTGTTGATGCTCCGCC+TGG 0.377996 1.2:+4008052 MS.gene044033:CDS
CAGCTAACGCAAATGCCAGC+TGG 0.379548 1.2:-4007772 None:intergenic
CCAAAGATGCTTGGCCTAGA+AGG 0.402010 1.2:+4007848 MS.gene044033:CDS
AAAGTCGGAGTGAAAGTTCT+TGG 0.411803 1.2:+4008202 MS.gene044033:CDS
TCTATGTTGAGTCTAATCTT+GGG 0.416626 1.2:+4007909 MS.gene044033:CDS
CACTGTGAAACATAAGATAC+TGG 0.420840 1.2:+4007706 MS.gene044033:CDS
AAGTCGGAGTGAAAGTTCTT+GGG 0.427598 1.2:+4008203 MS.gene044033:CDS
ATCTTGGGGTCATGTCAATT+GGG 0.431936 1.2:+4007924 MS.gene044033:CDS
CATAAGATACTGGTCTTGTC+AGG 0.432544 1.2:+4007716 MS.gene044033:CDS
TAAAGGAACCTTACCGAGAA+AGG 0.434619 1.2:-4008437 None:intergenic
ACTTGAGATTTGAGATGGGC+TGG 0.443213 1.2:-4008252 None:intergenic
AGCTAACGCAAATGCCAGCT+GGG 0.447107 1.2:-4007771 None:intergenic
GCAGAATCAGACTGAGGACC+TGG 0.452269 1.2:-4006531 None:intergenic
CTCCATATAACAGCTTCGTC+TGG 0.454307 1.2:-4007962 None:intergenic
CATAAACTTGAGATTTGAGA+TGG 0.455458 1.2:-4008257 None:intergenic
AGTGAAAGTTCTTGGGGTTG+TGG 0.458548 1.2:+4008210 MS.gene044033:CDS
CGTCTACATTAGCAGCATCT+AGG 0.458881 1.2:-4008108 None:intergenic
CTTCTGGACATTGATATTTG+TGG 0.463857 1.2:+4007815 MS.gene044033:CDS
CTTTGCAAGGCAGCTGAAGA+AGG 0.475604 1.2:+4008469 MS.gene044033:CDS
GGCGGTACCCTTTCTCGGTA+AGG 0.476321 1.2:+4008429 MS.gene044033:CDS
GAGATGGCGGTACCCTTTCT+CGG 0.483462 1.2:+4008424 MS.gene044033:CDS
TGGTGAGATGAAAGATGTTA+CGG 0.483466 1.2:+4008294 MS.gene044033:CDS
GGTCCTCAGTCTGATTCTGC+TGG 0.484126 1.2:+4006534 MS.gene044033:CDS
ATGTGTTCATCTGAGGTTCC+AGG 0.485714 1.2:-4008070 None:intergenic
GGCATTTGCGTTAGCTGCAA+GGG 0.486589 1.2:+4007778 MS.gene044033:CDS
GAGACCAACCAAGGTTGCTC+TGG 0.487893 1.2:-4007883 None:intergenic
ATACGCTCGTTGGCATCCTC+AGG 0.491563 1.2:-4006404 None:intergenic
GATTTGAGATGGGCTGGGAC+AGG 0.504393 1.2:-4008246 None:intergenic
TTGCAAAGCTGTGGATCTAA+AGG 0.505094 1.2:-4008454 None:intergenic
ATACTGGTCTTGTCAGGAAA+GGG 0.511385 1.2:+4007722 MS.gene044033:CDS
CTTGAGATTTGAGATGGGCT+GGG 0.511450 1.2:-4008251 None:intergenic
CCACGCATCCCAAAGATGCT+TGG 0.518598 1.2:+4007839 MS.gene044033:CDS
TCAGCTGCCTTGCAAAGCTG+TGG 0.521436 1.2:-4008463 None:intergenic
TGGCATTTGCGTTAGCTGCA+AGG 0.531152 1.2:+4007777 MS.gene044033:CDS
GATAAGCTGATGGAAACTAG+TGG 0.534659 1.2:+4008553 MS.gene044033:CDS
AGATTAGACTCAACATAGAC+AGG 0.537946 1.2:-4007905 None:intergenic
AAAGGAACCTTACCGAGAAA+GGG 0.538294 1.2:-4008436 None:intergenic
GAGATACACCAGAGCAACCT+TGG 0.541471 1.2:+4007875 MS.gene044033:CDS
GATACTGGTCTTGTCAGGAA+AGG 0.542244 1.2:+4007721 MS.gene044033:CDS
TTGTCAGGAAAGGGAGGTGT+TGG 0.547516 1.2:+4007731 MS.gene044033:CDS
AGGTATATCTCCGTTCTCCA+TGG 0.548279 1.2:-4006384 None:intergenic
TACACCAGAGCAACCTTGGT+TGG 0.551299 1.2:+4007879 MS.gene044033:CDS
ATAACAGCTTCGTCTGGATG+AGG 0.554608 1.2:-4007956 None:intergenic
CTGTCAATGACTGCAAGTAA+TGG 0.558916 1.2:+4008577 MS.gene044033:CDS
AATTGAAATGTGTTCATCTG+AGG 0.559191 1.2:-4008077 None:intergenic
ATAAACTTGAGATTTGAGAT+GGG 0.559421 1.2:-4008256 None:intergenic
AAAGATAATAGATAAGCTGA+TGG 0.562227 1.2:+4008543 MS.gene044033:CDS
GGTTGCCATTGCTGAAAGAA+TGG 0.567541 1.2:+4007682 MS.gene044033:CDS
AAATATATTCATACGCTCGT+TGG 0.569537 1.2:-4006414 None:intergenic
AGTGGCCATTCTTTCAGCAA+TGG 0.570251 1.2:-4007687 None:intergenic
ACTATCAAATACTTCACTGC+AGG 0.571986 1.2:-4008371 None:intergenic
CTATGTTGAGTCTAATCTTG+GGG 0.574536 1.2:+4007910 MS.gene044033:CDS
CCAAGCATCTTTGGGATGCG+TGG 0.581579 1.2:-4007839 None:intergenic
GTGGCATTTACAGATTGCCC+AGG 0.582123 1.2:+4006513 MS.gene044033:intron
GACGAAGCTGTTATATGGAG+AGG 0.584494 1.2:+4007965 MS.gene044033:CDS
AGAAGAGCTTCCATGGAGAA+CGG 0.601117 1.2:+4006374 None:intergenic
ATAAGCTGATGGAAACTAGT+GGG 0.602164 1.2:+4008554 MS.gene044033:CDS
TTTAGATCCACAGCTTTGCA+AGG 0.603851 1.2:+4008456 MS.gene044033:CDS
GTTGAAGATGTGTAACGAGA+TGG 0.614173 1.2:+4008408 MS.gene044033:CDS
CAGAATCAGACTGAGGACCT+GGG 0.614924 1.2:-4006530 None:intergenic
AGTCGGAGTGAAAGTTCTTG+GGG 0.628178 1.2:+4008204 MS.gene044033:CDS
AAGAGAGACTTGTTGAGGAG+TGG 0.628280 1.2:-4008146 None:intergenic
AGATGAAAGATGTTACGGAG+TGG 0.628653 1.2:+4008299 MS.gene044033:CDS
CTAGATGCTGCTAATGTAGA+CGG 0.629983 1.2:+4008109 MS.gene044033:CDS
CTGGTCTTGTCAGGAAAGGG+AGG 0.640582 1.2:+4007725 MS.gene044033:CDS
GAAGTATTTGATAGTAGCCG+TGG 0.649921 1.2:+4008379 MS.gene044033:CDS
TCAATAAGAGAGACTTGTTG+AGG 0.650660 1.2:-4008151 None:intergenic
GTATTTGATAGTAGCCGTGG+TGG 0.653467 1.2:+4008382 MS.gene044033:CDS
GGGGTTGTGGAGAATATGAG+TGG 0.671351 1.2:+4008223 MS.gene044033:CDS
GGAAAATCTGATGCATGTGA+AGG 0.682695 1.2:+4006555 MS.gene044033:CDS
ACATCTTCAACGCTCCACCA+CGG 0.690721 1.2:-4008396 None:intergenic
TTTCCAGCAGAATCAGACTG+AGG 0.699719 1.2:-4006537 None:intergenic
CATAGACAGGAGACCAACCA+AGG 0.702138 1.2:-4007892 None:intergenic
GAAGATGTGTAACGAGATGG+CGG 0.710160 1.2:+4008411 MS.gene044033:CDS
GGAGAACGGAGATATACCTG+AGG 0.730578 1.2:+4006388 MS.gene044033:CDS
CAGTATCTTATGTTTCACAG+TGG 0.751734 1.2:-4007705 None:intergenic
TGTTCATCTGAGGTTCCAGG+CGG 0.754863 1.2:-4008067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATAATATTTTTTCTTAA+CGG + chr1.2:4007483-4007502 MS.gene044033:intron 10.0%
!!! AGTTTTTAAAAGATGTTTAT+TGG + chr1.2:4008014-4008033 MS.gene044033:CDS 15.0%
!!! GTTTTTAAAAGATGTTTATT+GGG + chr1.2:4008015-4008034 MS.gene044033:CDS 15.0%
!!! TTATTTTAATAAACTCTACA+GGG - chr1.2:4006837-4006856 None:intergenic 15.0%
!!! TTTTTAAAAGATGTTTATTG+GGG + chr1.2:4008016-4008035 MS.gene044033:CDS 15.0%
!! ATATTTATAATCTGTTTCAG+AGG - chr1.2:4007415-4007434 None:intergenic 20.0%
!! CTGTAGAGTTTATTAAAATA+AGG + chr1.2:4006836-4006855 MS.gene044033:intron 20.0%
!! TGAACAAGCTTATATAAATA+AGG - chr1.2:4006975-4006994 None:intergenic 20.0%
!! TTTATGAAGATTACAGATAA+TGG + chr1.2:4008274-4008293 MS.gene044033:CDS 20.0%
!!! AACATAAAAGCATAAGATAA+AGG - chr1.2:4006642-4006661 None:intergenic 20.0%
!!! ATGCTGATTAAATATTAAGT+TGG - chr1.2:4007386-4007405 None:intergenic 20.0%
!!! ATTAATCTTTTCATTCAAAC+AGG - chr1.2:4006700-4006719 None:intergenic 20.0%
!!! CGGATAATTTCTTAATTTTA+TGG + chr1.2:4007570-4007589 MS.gene044033:intron 20.0%
!!! CTTATCTATTATCTTTTGTA+AGG - chr1.2:4008539-4008558 None:intergenic 20.0%
!!! CTTATTTTAATAAACTCTAC+AGG - chr1.2:4006838-4006857 None:intergenic 20.0%
!!! TATTTTTTCTTAACGGAAAT+TGG + chr1.2:4007490-4007509 MS.gene044033:intron 20.0%
!!! TTAATCTTTTCATTCAAACA+GGG - chr1.2:4006699-4006718 None:intergenic 20.0%
! AAAGATAATAGATAAGCTGA+TGG + chr1.2:4008543-4008562 MS.gene044033:CDS 25.0%
! AAATATGACATCAAGAAAGT+AGG - chr1.2:4007524-4007543 None:intergenic 25.0%
! ACCATCAACTACTTATATTT+AGG + chr1.2:4006673-4006692 MS.gene044033:intron 25.0%
! ATCATTCTCATTGCTTATTT+GGG + chr1.2:4007097-4007116 MS.gene044033:intron 25.0%
! ATTTGTTCAATTTGTGAAGT+TGG + chr1.2:4007311-4007330 MS.gene044033:intron 25.0%
! CAGATTATAAATATTCTCTC+TGG + chr1.2:4007421-4007440 MS.gene044033:intron 25.0%
! TATAGGGTTATTAATTCCTT+GGG + chr1.2:4007256-4007275 MS.gene044033:intron 25.0%
! TGAAACAATGGCAAAATAAA+AGG - chr1.2:4007449-4007468 None:intergenic 25.0%
! TTATAGGGTTATTAATTCCT+TGG + chr1.2:4007255-4007274 MS.gene044033:intron 25.0%
!! AAAATGATACTTTGAGTTCT+AGG + chr1.2:4006995-4007014 MS.gene044033:intron 25.0%
!! ATAAAAGCATAAGATAAAGG+CGG - chr1.2:4006639-4006658 None:intergenic 25.0%
!! ATAAACTTGAGATTTGAGAT+GGG - chr1.2:4008259-4008278 None:intergenic 25.0%
!! TTTTCATTGTTCTTTTGCAT+TGG + chr1.2:4007646-4007665 MS.gene044033:intron 25.0%
!!! TATAAGTAGTTGATGGTTAT+TGG - chr1.2:4006670-4006689 None:intergenic 25.0%
!!! TATTGTTTGGTCTTGTTATA+GGG + chr1.2:4007240-4007259 MS.gene044033:intron 25.0%
!!! TGCTTAGTTTGTTTATTGTT+TGG + chr1.2:4007227-4007246 MS.gene044033:intron 25.0%
!!! TTATTGTTTGGTCTTGTTAT+AGG + chr1.2:4007239-4007258 MS.gene044033:intron 25.0%
!!! TTCTTGTGTTTTTTGTATTG+TGG + chr1.2:4006494-4006513 MS.gene044033:intron 25.0%
!!! TTTGAGCATTTTTTTAACCT+TGG + chr1.2:4007031-4007050 MS.gene044033:intron 25.0%
AAATATATTCATACGCTCGT+TGG - chr1.2:4006417-4006436 None:intergenic 30.0%
AATTGAAATGTGTTCATCTG+AGG - chr1.2:4008080-4008099 None:intergenic 30.0%
ACCAAAATGCTTAAACATGA+AGG - chr1.2:4007622-4007641 None:intergenic 30.0%
CAATTAATCGTTTACCATGT+CGG + chr1.2:4006726-4006745 MS.gene044033:intron 30.0%
CATAAACTTGAGATTTGAGA+TGG - chr1.2:4008260-4008279 None:intergenic 30.0%
CATCATTCTCATTGCTTATT+TGG + chr1.2:4007096-4007115 MS.gene044033:intron 30.0%
GATAAGCTAAAATAAACCAG+TGG + chr1.2:4006941-4006960 MS.gene044033:intron 30.0%
GCCTAAATATAAGTAGTTGA+TGG - chr1.2:4006677-4006696 None:intergenic 30.0%
GCGATTAAATTCAACATTTC+AGG - chr1.2:4008352-4008371 None:intergenic 30.0%
TACAGGGTAACTTTCAAAAA+CGG - chr1.2:4006821-4006840 None:intergenic 30.0%
TATCTAATACATAAGCACCA+AGG - chr1.2:4007051-4007070 None:intergenic 30.0%
TCTATGTTGAGTCTAATCTT+GGG + chr1.2:4007909-4007928 MS.gene044033:CDS 30.0%
TGCCATTGTTTCAAAGTTAA+TGG + chr1.2:4007456-4007475 MS.gene044033:intron 30.0%
! GTGAATTTTTGCAAGAAAGT+CGG + chr1.2:4008187-4008206 MS.gene044033:CDS 30.0%
! TCTATTATCTTTTGTAAGGC+TGG - chr1.2:4008535-4008554 None:intergenic 30.0%
!! ATACTTTGAGTTCTAGGATT+AGG + chr1.2:4007001-4007020 MS.gene044033:intron 30.0%
!! CACCATTAACTTTGAAACAA+TGG - chr1.2:4007461-4007480 None:intergenic 30.0%
!! TACTTTGAGTTCTAGGATTA+GGG + chr1.2:4007002-4007021 MS.gene044033:intron 30.0%
!!! CGTATGACATTTTTAAAGTC+AGG + chr1.2:4007174-4007193 MS.gene044033:intron 30.0%
AACACAAGAATCAAAGTCAG+TGG - chr1.2:4006484-4006503 None:intergenic 35.0%
ACTATCAAATACTTCACTGC+AGG - chr1.2:4008374-4008393 None:intergenic 35.0%
AGATTAGACTCAACATAGAC+AGG - chr1.2:4007908-4007927 None:intergenic 35.0%
ATAAGCTGATGGAAACTAGT+GGG + chr1.2:4008554-4008573 MS.gene044033:CDS 35.0%
ATCAGCTCTTTCATAGTTCA+TGG + chr1.2:4007145-4007164 MS.gene044033:intron 35.0%
ATTGAATGATGTCCAACACA+TGG - chr1.2:4007363-4007382 None:intergenic 35.0%
CACTGTGAAACATAAGATAC+TGG + chr1.2:4007706-4007725 MS.gene044033:CDS 35.0%
CAGTATCTTATGTTTCACAG+TGG - chr1.2:4007708-4007727 None:intergenic 35.0%
CTATGAAATGAACCATGTGT+TGG + chr1.2:4007348-4007367 MS.gene044033:intron 35.0%
CTATGTTGAGTCTAATCTTG+GGG + chr1.2:4007910-4007929 MS.gene044033:CDS 35.0%
CTTCTGGACATTGATATTTG+TGG + chr1.2:4007815-4007834 MS.gene044033:CDS 35.0%
GTCTATGTTGAGTCTAATCT+TGG + chr1.2:4007908-4007927 MS.gene044033:CDS 35.0%
GTTCATTTCATAGCTGTCAA+AGG - chr1.2:4007341-4007360 None:intergenic 35.0%
TGGTGAGATGAAAGATGTTA+CGG + chr1.2:4008294-4008313 MS.gene044033:CDS 35.0%
TTGTAGTGTGATTTCTTTCC+AGG + chr1.2:4007071-4007090 MS.gene044033:intron 35.0%
! AAATAAGGACTTGTTTCCAC+TGG - chr1.2:4006960-4006979 None:intergenic 35.0%
! GCCTTCATGTTTAAGCATTT+TGG + chr1.2:4007618-4007637 MS.gene044033:intron 35.0%
! TAGATCGTGTTTTGCAGATA+AGG + chr1.2:4008492-4008511 MS.gene044033:CDS 35.0%
!! CTTATATATAAGCACCGACA+TGG - chr1.2:4006743-4006762 None:intergenic 35.0%
!! TCAATAAGAGAGACTTGTTG+AGG - chr1.2:4008154-4008173 None:intergenic 35.0%
!! TGGCACAAATTTGCTGATTT+GGG - chr1.2:4006585-4006604 None:intergenic 35.0%
!! TGGGTTGATTAGCAAAGAAA+TGG + chr1.2:4007116-4007135 MS.gene044033:intron 35.0%
!!! GTGGGTATAGTTTTGTGTAA+AGG + chr1.2:4007288-4007307 MS.gene044033:intron 35.0%
!!! TGCATTGGTTTTTGCAGATA+TGG + chr1.2:4007661-4007680 MS.gene044033:intron 35.0%
AAAGGAACCTTACCGAGAAA+GGG - chr1.2:4008439-4008458 None:intergenic 40.0%
AAAGTCGGAGTGAAAGTTCT+TGG + chr1.2:4008202-4008221 MS.gene044033:CDS 40.0%
AACTTACGACATACCTACAC+AGG - chr1.2:4006877-4006896 None:intergenic 40.0%
AAGTCGGAGTGAAAGTTCTT+GGG + chr1.2:4008203-4008222 MS.gene044033:CDS 40.0%
AATCTTGGGGTCATGTCAAT+TGG + chr1.2:4007923-4007942 MS.gene044033:CDS 40.0%
AGATGAAAGATGTTACGGAG+TGG + chr1.2:4008299-4008318 MS.gene044033:CDS 40.0%
ATCCAGACGAAGCTGTTATA+TGG + chr1.2:4007960-4007979 MS.gene044033:CDS 40.0%
ATCTTGGGGTCATGTCAATT+GGG + chr1.2:4007924-4007943 MS.gene044033:CDS 40.0%
ATTCCTTGGGCATTTGAAAG+TGG + chr1.2:4007269-4007288 MS.gene044033:intron 40.0%
CTAGATGCTGCTAATGTAGA+CGG + chr1.2:4008109-4008128 MS.gene044033:CDS 40.0%
CTGTCAATGACTGCAAGTAA+TGG + chr1.2:4008577-4008596 MS.gene044033:CDS 40.0%
GATAAGCTGATGGAAACTAG+TGG + chr1.2:4008553-4008572 MS.gene044033:CDS 40.0%
GGAAAATCTGATGCATGTGA+AGG + chr1.2:4006555-4006574 MS.gene044033:CDS 40.0%
GTTGAAGATGTGTAACGAGA+TGG + chr1.2:4008408-4008427 MS.gene044033:CDS 40.0%
TAAAGGAACCTTACCGAGAA+AGG - chr1.2:4008440-4008459 None:intergenic 40.0%
TTCCTTGGGCATTTGAAAGT+GGG + chr1.2:4007270-4007289 MS.gene044033:intron 40.0%
TTGCAAAGCTGTGGATCTAA+AGG - chr1.2:4008457-4008476 None:intergenic 40.0%
TTTAGATCCACAGCTTTGCA+AGG + chr1.2:4008456-4008475 MS.gene044033:CDS 40.0%
! GAAGTATTTGATAGTAGCCG+TGG + chr1.2:4008379-4008398 MS.gene044033:CDS 40.0%
! GTGACTTGTGAAACTGCTTA+TGG - chr1.2:4006904-4006923 None:intergenic 40.0%
!! ATACTGGTCTTGTCAGGAAA+GGG + chr1.2:4007722-4007741 MS.gene044033:CDS 40.0%
!! CATAAGATACTGGTCTTGTC+AGG + chr1.2:4007716-4007735 MS.gene044033:CDS 40.0%
!! GTGGCACAAATTTGCTGATT+TGG - chr1.2:4006586-4006605 None:intergenic 40.0%
!! TACGACACTTGAGCTGTTTT+CGG + chr1.2:4007550-4007569 MS.gene044033:intron 40.0%
!! TTGATAAGCCCATTTTTGCG+TGG - chr1.2:4007992-4008011 None:intergenic 40.0%
!!! GGATTTTCAAGTTGGTCTTC+TGG + chr1.2:4007799-4007818 MS.gene044033:CDS 40.0%
AGCAATGAGAATGATGAGCC+TGG - chr1.2:4007092-4007111 None:intergenic 45.0%
AGTCGGAGTGAAAGTTCTTG+GGG + chr1.2:4008204-4008223 MS.gene044033:CDS 45.0%
AGTGAAAGTTCTTGGGGTTG+TGG + chr1.2:4008210-4008229 MS.gene044033:CDS 45.0%
AGTGGCCATTCTTTCAGCAA+TGG - chr1.2:4007690-4007709 None:intergenic 45.0%
ATAACAGCTTCGTCTGGATG+AGG - chr1.2:4007959-4007978 None:intergenic 45.0%
CGTCTACATTAGCAGCATCT+AGG - chr1.2:4008111-4008130 None:intergenic 45.0%
CTCCATATAACAGCTTCGTC+TGG - chr1.2:4007965-4007984 None:intergenic 45.0%
CTTCTAGGCCAAGCATCTTT+GGG - chr1.2:4007850-4007869 None:intergenic 45.0%
GAAGATGTGTAACGAGATGG+CGG + chr1.2:4008411-4008430 MS.gene044033:CDS 45.0%
GACGAAGCTGTTATATGGAG+AGG + chr1.2:4007965-4007984 MS.gene044033:CDS 45.0%
GGTGTATCTCTTGACCTTCT+AGG - chr1.2:4007865-4007884 None:intergenic 45.0%
GGTTGCCATTGCTGAAAGAA+TGG + chr1.2:4007682-4007701 MS.gene044033:CDS 45.0%
TACCCACTTTCAAATGCCCA+AGG - chr1.2:4007275-4007294 None:intergenic 45.0%
TTTCCAGCAGAATCAGACTG+AGG - chr1.2:4006540-4006559 None:intergenic 45.0%
! ACTTGAGATTTGAGATGGGC+TGG - chr1.2:4008255-4008274 None:intergenic 45.0%
! ATGTGTTCATCTGAGGTTCC+AGG - chr1.2:4008073-4008092 None:intergenic 45.0%
! CTTGAGATTTGAGATGGGCT+GGG - chr1.2:4008254-4008273 None:intergenic 45.0%
! GTATTTGATAGTAGCCGTGG+TGG + chr1.2:4008382-4008401 MS.gene044033:CDS 45.0%
!! AAGAGAGACTTGTTGAGGAG+TGG - chr1.2:4008149-4008168 None:intergenic 45.0%
!! GATACTGGTCTTGTCAGGAA+AGG + chr1.2:4007721-4007740 MS.gene044033:CDS 45.0%
!!! GCTGCAAGGGATTTTCAAGT+TGG + chr1.2:4007791-4007810 MS.gene044033:CDS 45.0%
AAAACAGCGTGTGCCTGTGT+AGG + chr1.2:4006861-4006880 MS.gene044033:intron 50.0%
AACCAGGGTCAGGTCCTTTA+GGG - chr1.2:4006612-4006631 None:intergenic 50.0%
ACATCTTCAACGCTCCACCA+CGG - chr1.2:4008399-4008418 None:intergenic 50.0%
AGATAAAGGCGGAACCAACC+AGG - chr1.2:4006628-4006647 None:intergenic 50.0%
AGCTAACGCAAATGCCAGCT+GGG - chr1.2:4007774-4007793 None:intergenic 50.0%
CAGAATCAGACTGAGGACCT+GGG - chr1.2:4006533-4006552 None:intergenic 50.0%
CATAGACAGGAGACCAACCA+AGG - chr1.2:4007895-4007914 None:intergenic 50.0%
CCAAAGATGCTTGGCCTAGA+AGG + chr1.2:4007848-4007867 MS.gene044033:CDS 50.0%
CCTTCTAGGCCAAGCATCTT+TGG - chr1.2:4007851-4007870 None:intergenic 50.0%
CTAATTGTTGATGCTCCGCC+TGG + chr1.2:4008052-4008071 MS.gene044033:CDS 50.0%
CTTTGCAAGGCAGCTGAAGA+AGG + chr1.2:4008469-4008488 MS.gene044033:CDS 50.0%
GAGATACACCAGAGCAACCT+TGG + chr1.2:4007875-4007894 MS.gene044033:CDS 50.0%
GATAAAGGCGGAACCAACCA+GGG - chr1.2:4006627-4006646 None:intergenic 50.0%
GGAGAACGGAGATATACCTG+AGG + chr1.2:4006388-4006407 MS.gene044033:CDS 50.0%
GGAGAGGTCCACGCAAAAAT+GGG + chr1.2:4007981-4008000 MS.gene044033:CDS 50.0%
GGCATTTGCGTTAGCTGCAA+GGG + chr1.2:4007778-4007797 MS.gene044033:CDS 50.0%
GGGGTTGTGGAGAATATGAG+TGG + chr1.2:4008223-4008242 MS.gene044033:CDS 50.0%
GTGGCATTTACAGATTGCCC+AGG + chr1.2:4006513-4006532 MS.gene044033:intron 50.0%
TACACCAGAGCAACCTTGGT+TGG + chr1.2:4007879-4007898 MS.gene044033:CDS 50.0%
TGGAGAGGTCCACGCAAAAA+TGG + chr1.2:4007980-4007999 MS.gene044033:CDS 50.0%
TGGCATTTGCGTTAGCTGCA+AGG + chr1.2:4007777-4007796 MS.gene044033:CDS 50.0%
! ATTTGTGCCACTGCCCCTAA+AGG + chr1.2:4006595-4006614 MS.gene044033:intron 50.0%
! TGTTCATCTGAGGTTCCAGG+CGG - chr1.2:4008070-4008089 None:intergenic 50.0%
! TTGTCAGGAAAGGGAGGTGT+TGG + chr1.2:4007731-4007750 MS.gene044033:CDS 50.0%
ACCAGGGTCAGGTCCTTTAG+GGG - chr1.2:4006611-4006630 None:intergenic 55.0%
ATACGCTCGTTGGCATCCTC+AGG - chr1.2:4006407-4006426 None:intergenic 55.0%
CAACCAGGGTCAGGTCCTTT+AGG - chr1.2:4006613-4006632 None:intergenic 55.0%
CAGCTAACGCAAATGCCAGC+TGG - chr1.2:4007775-4007794 None:intergenic 55.0%
CCACGCATCCCAAAGATGCT+TGG + chr1.2:4007839-4007858 MS.gene044033:CDS 55.0%
CTAAAGGACCTGACCCTGGT+TGG + chr1.2:4006611-4006630 MS.gene044033:intron 55.0%
GAGACCAACCAAGGTTGCTC+TGG - chr1.2:4007886-4007905 None:intergenic 55.0%
GCAGAATCAGACTGAGGACC+TGG - chr1.2:4006534-4006553 None:intergenic 55.0%
GGTCCTCAGTCTGATTCTGC+TGG + chr1.2:4006534-4006553 MS.gene044033:CDS 55.0%
TCAGCTGCCTTGCAAAGCTG+TGG - chr1.2:4008466-4008485 None:intergenic 55.0%
! GAGATGGCGGTACCCTTTCT+CGG + chr1.2:4008424-4008443 MS.gene044033:CDS 55.0%
! GAGCACATTTTCTGCCCAGC+TGG + chr1.2:4007757-4007776 MS.gene044033:CDS 55.0%
!! CCAAGCATCTTTGGGATGCG+TGG - chr1.2:4007842-4007861 None:intergenic 55.0%
!! CTGGTCTTGTCAGGAAAGGG+AGG + chr1.2:4007725-4007744 MS.gene044033:CDS 55.0%
!! GATTTGAGATGGGCTGGGAC+AGG - chr1.2:4008249-4008268 None:intergenic 55.0%
GGCGGTACCCTTTCTCGGTA+AGG + chr1.2:4008429-4008448 MS.gene044033:CDS 60.0%
! GTCAGGTCCTTTAGGGGCAG+TGG - chr1.2:4006605-4006624 None:intergenic 60.0%
AGGCGGAACCAACCAGGGTC+AGG - chr1.2:4006622-4006641 None:intergenic 65.0%
GCCCCTAAAGGACCTGACCC+TGG + chr1.2:4006607-4006626 MS.gene044033:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 4006386 4008606 4006386 ID=MS.gene044033
chr1.2 mRNA 4006386 4008606 4006386 ID=MS.gene044033.t1;Parent=MS.gene044033
chr1.2 exon 4006386 4006422 4006386 ID=MS.gene044033.t1.exon1;Parent=MS.gene044033.t1
chr1.2 CDS 4006386 4006422 4006386 ID=cds.MS.gene044033.t1;Parent=MS.gene044033.t1
chr1.2 exon 4006526 4006576 4006526 ID=MS.gene044033.t1.exon2;Parent=MS.gene044033.t1
chr1.2 CDS 4006526 4006576 4006526 ID=cds.MS.gene044033.t1;Parent=MS.gene044033.t1
chr1.2 exon 4007678 4008606 4007678 ID=MS.gene044033.t1.exon3;Parent=MS.gene044033.t1
chr1.2 CDS 4007678 4008606 4007678 ID=cds.MS.gene044033.t1;Parent=MS.gene044033.t1
Gene Sequence

>MS.gene044033

ATGGAGAACGGAGATATACCTGAGGATGCCAACGAGCGTATGAATATATTTATTAATTATTATTATGTGTTTGAATTTTGCTGTTTCTATATATTCCACTGACTTTGATTCTTGTGTTTTTTGTATTGTGGCATTTACAGATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATGCATGTGAAGGTTTGCCCAAATCAGCAAATTTGTGCCACTGCCCCTAAAGGACCTGACCCTGGTTGGTTCCGCCTTTATCTTATGCTTTTATGTTTATTTCCAATAACCATCAACTACTTATATTTAGGCCCTGTTTGAATGAAAAGATTAATTAAACGCAATTAATCGTTTACCATGTCGGTGCTTATATATAAGCTATTTTGATAACAGATGATAAAATAAATCAAAGTGTTTTCATATAAACTATGAGCCGTTTTTGAAAGTTACCCTGTAGAGTTTATTAAAATAAGGTGAAAACAGCGTGTGCCTGTGTAGGTATGTCGTAAGTTGTGTCCATAAGCAGTTTCACAAGTCACACATGCTTATGTTAGTAGATAAGCTAAAATAAACCAGTGGAAACAAGTCCTTATTTATATAAGCTTGTTCAAAAATGATACTTTGAGTTCTAGGATTAGGGACTGTTTTTGAGCATTTTTTTAACCTTGGTGCTTATGTATTAGATATTGTAGTGTGATTTCTTTCCAGGCTCATCATTCTCATTGCTTATTTGGGTTGATTAGCAAAGAAATGGAATAAAATCAGCTCTTTCATAGTTCATGGCGTTGTCGTATGACATTTTTAAAGTCAGGACTAGTGAAACATTTTATGTGATATTGCTTTGCTTAGTTTGTTTATTGTTTGGTCTTGTTATAGGGTTATTAATTCCTTGGGCATTTGAAAGTGGGTATAGTTTTGTGTAAAGGATTTGTTCAATTTGTGAAGTTGGAGATCCTTTGACAGCTATGAAATGAACCATGTGTTGGACATCATTCAATCCAACTTAATATTTAATCAGCATGTTTTTCCTCTGAAACAGATTATAAATATTCTCTCTGGATCCTTTTATTTTGCCATTGTTTCAAAGTTAATGGTGATAACATAATATTTTTTCTTAACGGAAATTGGTAGAAATACCTACTTTCTTGATGTCATATTTTTTCTGTACGACACTTGAGCTGTTTTCGGATAATTTCTTAATTTTATGGAATTGAGAATGTTGAGCAACAAATTGCCTTCATGTTTAAGCATTTTGGTGACATTTTCATTGTTCTTTTGCATTGGTTTTTGCAGATATGGTTGCCATTGCTGAAAGAATGGCCACTGTGAAACATAAGATACTGGTCTTGTCAGGAAAGGGAGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCGTTAGCTGCAAGGGATTTTCAAGTTGGTCTTCTGGACATTGATATTTGTGGTCCACGCATCCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGTTGGTCTCCTGTCTATGTTGAGTCTAATCTTGGGGTCATGTCAATTGGGTTCATGCTTCCTCATCCAGACGAAGCTGTTATATGGAGAGGTCCACGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGATGTTTATTGGGGTGAACTTGATTTTCTAATTGTTGATGCTCCGCCTGGAACCTCAGATGAACACATTTCAATTGTTCAATGCCTAGATGCTGCTAATGTAGACGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTATTGATGTGAAAAAAGAAGTGAATTTTTGCAAGAAAGTCGGAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGTGGCCTGTCCCAGCCCATCTCAAATCTCAAGTTTATGAAGATTACAGATAATGGTGAGATGAAAGATGTTACGGAGTGGATATCAGAATACATGAAAGAAAAAGCGCCTGAAATGTTGAATTTAATCGCCTGCAGTGAAGTATTTGATAGTAGCCGTGGTGGAGCGTTGAAGATGTGTAACGAGATGGCGGTACCCTTTCTCGGTAAGGTTCCTTTAGATCCACAGCTTTGCAAGGCAGCTGAAGAAGGTAGATCGTGTTTTGCAGATAAGGATTGTGTCGTGAGCGCTCCAGCCTTACAAAAGATAATAGATAAGCTGATGGAAACTAGTGGGCTGTCAATGACTGCAAGTAATGGAGTGTAA
Protein sequence

>MS.gene044033.t1

MENGDIPEDANEHCPGPQSDSAGKSDACEDMVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDIDICGPRIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDAANVDGAIIVTTPQQVSLIDVKKEVNFCKKVGVKVLGVVENMSGLSQPISNLKFMKITDNGEMKDVTEWISEYMKEKAPEMLNLIACSEVFDSSRGGALKMCNEMAVPFLGKVPLDPQLCKAAEEGRSCFADKDCVVSAPALQKIIDKLMETSGLSMTASNGV