AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044386

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044386.t1 MTR_5g014710 64.968 314 108 1 90 403 47 358 5.88e-146 419
MS.gene044386.t1 MTR_4g092690 65.079 315 108 1 89 403 44 356 1.51e-141 407
MS.gene044386.t1 MTR_8g463760 60.121 331 126 3 77 403 15 343 1.86e-139 402
MS.gene044386.t1 MTR_8g463760 63.547 203 71 1 77 276 15 217 3.66e-88 268
MS.gene044386.t1 MTR_2g021700 72.549 51 14 0 256 306 52 102 4.04e-16 75.5
MS.gene044386.t1 MTR_2g045010 72.549 51 14 0 256 306 52 102 4.04e-16 75.5
MS.gene044386.t1 MTR_4g033285 73.333 45 12 0 256 300 52 96 1.45e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044386.t1 AT3G47520 77.309 379 76 4 20 398 23 391 0.0 573
MS.gene044386.t1 AT1G53240 64.537 313 109 1 91 403 31 341 2.71e-144 414
MS.gene044386.t1 AT2G22780 63.609 327 117 1 77 403 30 354 1.13e-143 413
MS.gene044386.t1 AT3G15020 63.259 313 113 1 91 403 31 341 1.47e-140 404
MS.gene044386.t1 AT5G09660 60.870 345 129 3 63 403 12 354 1.64e-135 392
MS.gene044386.t1 AT5G09660 64.762 315 109 1 89 403 21 333 3.87e-135 390
MS.gene044386.t1 AT5G09660 60.580 345 129 4 63 403 12 353 3.54e-133 386
MS.gene044386.t1 AT3G15020 64.338 272 97 0 91 362 31 302 9.82e-125 363
MS.gene044386.t1 AT5G09660 63.322 289 102 2 63 347 12 300 6.41e-117 345
MS.gene044386.t1 AT5G09660 68.605 258 81 0 90 347 22 279 2.05e-116 343
MS.gene044386.t1 AT3G53910 49.438 89 45 0 318 406 9 97 2.55e-26 102

Find 107 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAATCTAGTCCTTT+TGG 0.231181 8.4:+18669210 MS.gene044386:CDS
CAACACCCCTTCGAAAGTTT+TGG 0.243573 8.4:+18669560 MS.gene044386:CDS
GAAACACCAAAGAGCTTCTT+AGG 0.295270 8.4:-18669834 None:intergenic
GCAAGTTGCGGGTGAGGTTT+CGG 0.332641 8.4:-18669383 None:intergenic
GAGGAAGTGACCTCCCTGTT+TGG 0.346298 8.4:-18669194 None:intergenic
GTTAATTTCAACACCTTCTC+TGG 0.351785 8.4:+18669252 MS.gene044386:CDS
ACTATTGGAACCACCCAAAC+AGG 0.361628 8.4:+18669180 MS.gene044386:CDS
TCGATGCTGGCCTTAAGTTC+TGG 0.369041 8.4:-18670314 None:intergenic
AGGAAGTGACCTCCCTGTTT+GGG 0.375677 8.4:-18669193 None:intergenic
TCTCATCAAGATGTCGCCTT+TGG 0.378753 8.4:+18669473 MS.gene044386:CDS
CTTGGTGCTGCAGGAGGGAT+TGG 0.382446 8.4:+18669435 MS.gene044386:CDS
ATAATATGAATAAAAGCATT+GGG 0.384767 8.4:-18669744 None:intergenic
TGAGTATGAGCAGAAGGCTT+TGG 0.385556 8.4:+18670280 MS.gene044386:CDS
CGAGTCATGCCGGGCTTCCT+AGG 0.395727 8.4:-18669654 None:intergenic
TATGATATTGCGAATGTTAA+GGG 0.396701 8.4:+18669513 MS.gene044386:CDS
TTTAGAATTTCAGCGGCAAT+AGG 0.400849 8.4:-18669792 None:intergenic
CTATGATATTGCGAATGTTA+AGG 0.401378 8.4:+18669512 MS.gene044386:CDS
TCCTACAAAGTAGCGGTTCT+TGG 0.402994 8.4:+18669417 MS.gene044386:CDS
GTTGAGGCGAAGGCTGGTGC+AGG 0.406244 8.4:+18670059 MS.gene044386:CDS
TGCCTGAGGCTGCAAGTTGC+GGG 0.408008 8.4:-18669394 None:intergenic
TCGTCTCTTCGTGCACTTGA+CGG 0.411087 8.4:+18670128 MS.gene044386:CDS
CAGTTGTTGGAGGTCATGCC+GGG 0.417388 8.4:+18669931 MS.gene044386:CDS
ACCAAGAACCGCTACTTTGT+AGG 0.417991 8.4:-18669418 None:intergenic
CACCCGCAACTTGCAGCCTC+AGG 0.423294 8.4:+18669392 MS.gene044386:CDS
CCGGCATGACCTCCAACAAC+TGG 0.427912 8.4:-18669930 None:intergenic
ACATCAATGCTGGTATAGTC+AGG 0.428901 8.4:+18669691 MS.gene044386:CDS
TTATCCCTGCTGGTGTTCCT+AGG 0.429918 8.4:+18669637 MS.gene044386:CDS
GGCTTCCTAGGAACACCAGC+AGG 0.432243 8.4:-18669642 None:intergenic
AGCACTTAAGCCAGAACTTA+AGG 0.432437 8.4:+18670304 MS.gene044386:CDS
TGAGAGATGGCATGGCTTTG+AGG 0.432465 8.4:-18669275 None:intergenic
TATGATCCTAAGAAGCTCTT+TGG 0.434339 8.4:+18669828 MS.gene044386:CDS
AGGGTCTGCTACTTTGTCAA+TGG 0.435055 8.4:+18670079 MS.gene044386:CDS
GAGGCTGCAAGTTGCGGGTG+AGG 0.436560 8.4:-18669389 None:intergenic
GATGTGGATGTTCCAGTTGT+TGG 0.440014 8.4:+18669918 MS.gene044386:CDS
GTAGCGGTTCTTGGTGCTGC+AGG 0.442098 8.4:+18669426 MS.gene044386:CDS
CTCAATCCTTGGAGATCAGT+TGG 0.450054 8.4:-18670257 None:intergenic
GATAATATGAATAAAAGCAT+TGG 0.454366 8.4:-18669745 None:intergenic
CCAGTTGTTGGAGGTCATGC+CGG 0.456311 8.4:+18669930 MS.gene044386:CDS
GACTCTGAATCATCTTTCTC+TGG 0.457426 8.4:+18669303 MS.gene044386:CDS
TTTCACTGATGAAGAAATTG+AGG 0.470058 8.4:+18669998 MS.gene044386:CDS
ATGCCTGAGGCTGCAAGTTG+CGG 0.479068 8.4:-18669395 None:intergenic
GCTCATACTCACTCAATCCT+TGG 0.489832 8.4:-18670268 None:intergenic
GATGTTGTTGTTATCCCTGC+TGG 0.490735 8.4:+18669627 MS.gene044386:CDS
GAATTGAATTTCAAACCAAA+AGG 0.499197 8.4:-18669225 None:intergenic
TGGTTTGAAATTCAATTCCC+AGG 0.499844 8.4:+18669230 MS.gene044386:CDS
CTTCAAGGGTGAAGATTGGT+AGG 0.501008 8.4:+18670213 MS.gene044386:CDS
TACCAGCATTGATGTTGAAA+AGG 0.504347 8.4:-18669683 None:intergenic
TTTGCTTCAAGGGTGAAGAT+TGG 0.507205 8.4:+18670209 MS.gene044386:CDS
GAGTTAGCAAATTGTTTGAA+AGG 0.510601 8.4:+18669600 MS.gene044386:CDS
AAGGTCGTCACGAGTCATGC+CGG 0.512854 8.4:-18669664 None:intergenic
AAACCAAAAGGACTAGATTG+AGG 0.513013 8.4:-18669213 None:intergenic
TCGCAATATCATAGAGATGC+AGG 0.515907 8.4:-18669503 None:intergenic
AGCAAATTGTTTGAAAGGTG+TGG 0.519677 8.4:+18669605 MS.gene044386:CDS
ATAGGAACTGTAGAGTTCAC+TGG 0.520893 8.4:-18669774 None:intergenic
CGCTGAAATTCTAAAACAGA+AGG 0.523131 8.4:+18669800 MS.gene044386:CDS
AGGAGGGATTGGTCAGCCAC+TGG 0.524866 8.4:+18669446 MS.gene044386:CDS
TGCTGGTATAGTCAGGGACT+TGG 0.529987 8.4:+18669698 MS.gene044386:CDS
GTGGATGTTCCAGTTGTTGG+AGG 0.532818 8.4:+18669921 MS.gene044386:CDS
GCGGTTCTTGGTGCTGCAGG+AGG 0.533048 8.4:+18669429 MS.gene044386:CDS
GTGAAATCCAAAACTTTCGA+AGG 0.537192 8.4:-18669567 None:intergenic
ACTGTCAGGATTCAAAATGC+TGG 0.538512 8.4:+18670026 MS.gene044386:CDS
AGGTCGTCACGAGTCATGCC+GGG 0.542713 8.4:-18669663 None:intergenic
AGGGTGAAGATTGGTAGGAA+AGG 0.542764 8.4:+18670218 MS.gene044386:CDS
AAGTGACCTCCCTGTTTGGG+TGG 0.544528 8.4:-18669190 None:intergenic
GAGAGGAAGAATTGTAATCC+CGG 0.547677 8.4:-18669949 None:intergenic
AGAAGGTGTTGAAATTAACC+TGG 0.550640 8.4:-18669248 None:intergenic
TTTCTACACTTGATGTTGTG+AGG 0.552915 8.4:+18669853 MS.gene044386:CDS
GAGGTTGTTGAGGCGAAGGC+TGG 0.553690 8.4:+18670053 MS.gene044386:CDS
ATTGAGTGAGTATGAGCAGA+AGG 0.555968 8.4:+18670274 MS.gene044386:CDS
AACTGAGGTTGTTGAGGCGA+AGG 0.556107 8.4:+18670049 MS.gene044386:CDS
TTAATTCCAACTGATCTCCA+AGG 0.558509 8.4:+18670251 MS.gene044386:CDS
GCTGGTGTTCCTAGGAAGCC+CGG 0.561452 8.4:+18669645 MS.gene044386:CDS
CTTAAGGCCAGCATCGAGAA+GGG 0.563554 8.4:+18670320 MS.gene044386:CDS
TCATCAGTGAAACTCACTGA+GGG 0.567339 8.4:-18669987 None:intergenic
AAATTGAGGAGCTAACTGTC+AGG 0.577890 8.4:+18670012 MS.gene044386:CDS
GTCACATCTGAGAGATGGCA+TGG 0.579241 8.4:-18669283 None:intergenic
ACTTAAGGCCAGCATCGAGA+AGG 0.580005 8.4:+18670319 MS.gene044386:CDS
GATTCAAAATGCTGGAACTG+AGG 0.580164 8.4:+18670034 MS.gene044386:CDS
CGGTTCTTGGTGCTGCAGGA+GGG 0.586824 8.4:+18669430 MS.gene044386:CDS
GAACCTGAGGTTGATTGATG+TGG 0.587092 8.4:+18669902 MS.gene044386:CDS
TTCTACACTTGATGTTGTGA+GGG 0.588106 8.4:+18669854 MS.gene044386:CDS
CATCCACATCAATCAACCTC+AGG 0.589306 8.4:-18669905 None:intergenic
TGAAATCCAAAACTTTCGAA+GGG 0.589668 8.4:-18669566 None:intergenic
CATGGCTTTGAGGCCAGAGA+AGG 0.592005 8.4:-18669265 None:intergenic
TCAGAGTCACATCTGAGAGA+TGG 0.601214 8.4:-18669288 None:intergenic
TTGAGGCGAAGGCTGGTGCA+GGG 0.614890 8.4:+18670060 MS.gene044386:CDS
TGCTGGAACTGAGGTTGTTG+AGG 0.616411 8.4:+18670043 MS.gene044386:CDS
ATTGGGGCAATTATCTGCAA+CGG 0.623966 8.4:-18669727 None:intergenic
TTGCTCAGAAGAAGAACCTG+AGG 0.625392 8.4:+18669889 MS.gene044386:CDS
CATCAATGCTGGTATAGTCA+GGG 0.635474 8.4:+18669692 MS.gene044386:CDS
CTATTGGAACCACCCAAACA+GGG 0.635885 8.4:+18669181 MS.gene044386:CDS
AGATGCAGGTCGGAAACCAA+AGG 0.636274 8.4:-18669489 None:intergenic
TGCAAAAGTTGCACGCAGAG+CGG 0.636866 8.4:-18669340 None:intergenic
GAAGGTGTTGAAATTAACCT+GGG 0.642084 8.4:-18669247 None:intergenic
GCTGAAATTCTAAAACAGAA+GGG 0.647110 8.4:+18669801 MS.gene044386:CDS
TTAAGGCCAGCATCGAGAAG+GGG 0.649629 8.4:+18670321 MS.gene044386:CDS
TAAGGCCAGCATCGAGAAGG+GGG 0.655068 8.4:+18670322 MS.gene044386:CDS
TAATATGAATAAAAGCATTG+GGG 0.668981 8.4:-18669743 None:intergenic
GATTGGTAGGAAAGGAGTCG+AGG 0.670539 8.4:+18670226 MS.gene044386:CDS
GCTTCCTAGGAACACCAGCA+GGG 0.676922 8.4:-18669641 None:intergenic
TTCATCAGTGAAACTCACTG+AGG 0.681230 8.4:-18669988 None:intergenic
TCAGGCATCCTACAAAGTAG+CGG 0.690931 8.4:+18669410 MS.gene044386:CDS
GAAATCCAAAACTTTCGAAG+GGG 0.694170 8.4:-18669565 None:intergenic
AATATCATAGAGATGCAGGT+CGG 0.697174 8.4:-18669499 None:intergenic
GCTACTTTGTAGGATGCCTG+AGG 0.706674 8.4:-18669408 None:intergenic
ATCTTGATGAGAAGTGCCAG+TGG 0.724135 8.4:-18669462 None:intergenic
TTGGAACCACCCAAACAGGG+AGG 0.754881 8.4:+18669184 MS.gene044386:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATGAATAAAAGCATT+GGG - chr8.4:18669747-18669766 None:intergenic 15.0%
!!! GATAATATGAATAAAAGCAT+TGG - chr8.4:18669748-18669767 None:intergenic 20.0%
!!! TAATATGAATAAAAGCATTG+GGG - chr8.4:18669746-18669765 None:intergenic 20.0%
! GAATTGAATTTCAAACCAAA+AGG - chr8.4:18669228-18669247 None:intergenic 25.0%
! TATGATATTGCGAATGTTAA+GGG + chr8.4:18669513-18669532 MS.gene044386:CDS 25.0%
CTATGATATTGCGAATGTTA+AGG + chr8.4:18669512-18669531 MS.gene044386:CDS 30.0%
GAGTTAGCAAATTGTTTGAA+AGG + chr8.4:18669600-18669619 MS.gene044386:CDS 30.0%
TGAAATCCAAAACTTTCGAA+GGG - chr8.4:18669569-18669588 None:intergenic 30.0%
TTTCACTGATGAAGAAATTG+AGG + chr8.4:18669998-18670017 MS.gene044386:CDS 30.0%
!! GCTGAAATTCTAAAACAGAA+GGG + chr8.4:18669801-18669820 MS.gene044386:CDS 30.0%
!!! CTTCTGTTTTAGAATTTCAG+CGG - chr8.4:18669802-18669821 None:intergenic 30.0%
AAACCAAAAGGACTAGATTG+AGG - chr8.4:18669216-18669235 None:intergenic 35.0%
AATATCATAGAGATGCAGGT+CGG - chr8.4:18669502-18669521 None:intergenic 35.0%
AGCAAATTGTTTGAAAGGTG+TGG + chr8.4:18669605-18669624 MS.gene044386:CDS 35.0%
GAAATCCAAAACTTTCGAAG+GGG - chr8.4:18669568-18669587 None:intergenic 35.0%
GTGAAATCCAAAACTTTCGA+AGG - chr8.4:18669570-18669589 None:intergenic 35.0%
GTTAATTTCAACACCTTCTC+TGG + chr8.4:18669252-18669271 MS.gene044386:CDS 35.0%
TATGATCCTAAGAAGCTCTT+TGG + chr8.4:18669828-18669847 MS.gene044386:CDS 35.0%
TTAATTCCAACTGATCTCCA+AGG + chr8.4:18670251-18670270 MS.gene044386:CDS 35.0%
TTCACCCTTGAAGCAAAAAA+CGG - chr8.4:18670206-18670225 None:intergenic 35.0%
TTCTACACTTGATGTTGTGA+GGG + chr8.4:18669854-18669873 MS.gene044386:CDS 35.0%
TTTCTACACTTGATGTTGTG+AGG + chr8.4:18669853-18669872 MS.gene044386:CDS 35.0%
! TGGTTTGAAATTCAATTCCC+AGG + chr8.4:18669230-18669249 MS.gene044386:CDS 35.0%
! TTTAGAATTTCAGCGGCAAT+AGG - chr8.4:18669795-18669814 None:intergenic 35.0%
!! AGAAGGTGTTGAAATTAACC+TGG - chr8.4:18669251-18669270 None:intergenic 35.0%
!! CGCTGAAATTCTAAAACAGA+AGG + chr8.4:18669800-18669819 MS.gene044386:CDS 35.0%
!! GAAGGTGTTGAAATTAACCT+GGG - chr8.4:18669250-18669269 None:intergenic 35.0%
!! TACCAGCATTGATGTTGAAA+AGG - chr8.4:18669686-18669705 None:intergenic 35.0%
!!! GCATCAGCTACTTTTACTAT+TGG + chr8.4:18669165-18669184 MS.gene044386:CDS 35.0%
!!! TCGAAAGTTTTGGATTTCAC+AGG + chr8.4:18669570-18669589 MS.gene044386:CDS 35.0%
AAATTGAGGAGCTAACTGTC+AGG + chr8.4:18670012-18670031 MS.gene044386:CDS 40.0%
ACATCAATGCTGGTATAGTC+AGG + chr8.4:18669691-18669710 MS.gene044386:CDS 40.0%
ACTGTCAGGATTCAAAATGC+TGG + chr8.4:18670026-18670045 MS.gene044386:CDS 40.0%
AGCACTTAAGCCAGAACTTA+AGG + chr8.4:18670304-18670323 MS.gene044386:CDS 40.0%
ATAGGAACTGTAGAGTTCAC+TGG - chr8.4:18669777-18669796 None:intergenic 40.0%
ATTGAGTGAGTATGAGCAGA+AGG + chr8.4:18670274-18670293 MS.gene044386:CDS 40.0%
ATTGGGGCAATTATCTGCAA+CGG - chr8.4:18669730-18669749 None:intergenic 40.0%
CATCAATGCTGGTATAGTCA+GGG + chr8.4:18669692-18669711 MS.gene044386:CDS 40.0%
GAAACACCAAAGAGCTTCTT+AGG - chr8.4:18669837-18669856 None:intergenic 40.0%
GACTCTGAATCATCTTTCTC+TGG + chr8.4:18669303-18669322 MS.gene044386:CDS 40.0%
GAGAGGAAGAATTGTAATCC+CGG - chr8.4:18669952-18669971 None:intergenic 40.0%
GATTCAAAATGCTGGAACTG+AGG + chr8.4:18670034-18670053 MS.gene044386:CDS 40.0%
TCATCAGTGAAACTCACTGA+GGG - chr8.4:18669990-18670009 None:intergenic 40.0%
TCGCAATATCATAGAGATGC+AGG - chr8.4:18669506-18669525 None:intergenic 40.0%
TGAAGCAAAAAACGGAAGGT+CGG - chr8.4:18670198-18670217 None:intergenic 40.0%
TTCATCAGTGAAACTCACTG+AGG - chr8.4:18669991-18670010 None:intergenic 40.0%
TTTGCTTCAAGGGTGAAGAT+TGG + chr8.4:18670209-18670228 MS.gene044386:CDS 40.0%
! CGGTTTTCCTTTTGAGCTTT+GGG - chr8.4:18669366-18669385 None:intergenic 40.0%
! CTTCCTCAATCTAGTCCTTT+TGG + chr8.4:18669210-18669229 MS.gene044386:CDS 40.0%
! GACCTTTTCAACATCAATGC+TGG + chr8.4:18669681-18669700 MS.gene044386:CDS 40.0%
! TCGGTTTTCCTTTTGAGCTT+TGG - chr8.4:18669367-18669386 None:intergenic 40.0%
! TTTTGCACCCAAAGCTCAAA+AGG + chr8.4:18669356-18669375 MS.gene044386:CDS 40.0%
!! GGTTTTGTCTTTGACAAGAG+AGG - chr8.4:18669969-18669988 None:intergenic 40.0%
!!! ACCTTCCGTTTTTTGCTTCA+AGG + chr8.4:18670198-18670217 MS.gene044386:CDS 40.0%
!!! CCTTCCGTTTTTTGCTTCAA+GGG + chr8.4:18670199-18670218 MS.gene044386:CDS 40.0%
ACTATTGGAACCACCCAAAC+AGG + chr8.4:18669180-18669199 MS.gene044386:CDS 45.0%
AGGGTGAAGATTGGTAGGAA+AGG + chr8.4:18670218-18670237 MS.gene044386:CDS 45.0%
CATCCACATCAATCAACCTC+AGG - chr8.4:18669908-18669927 None:intergenic 45.0%
CCCTTGAAGCAAAAAACGGA+AGG - chr8.4:18670202-18670221 None:intergenic 45.0%
CTATTGGAACCACCCAAACA+GGG + chr8.4:18669181-18669200 MS.gene044386:CDS 45.0%
CTCAATCCTTGGAGATCAGT+TGG - chr8.4:18670260-18670279 None:intergenic 45.0%
CTTCAAGGGTGAAGATTGGT+AGG + chr8.4:18670213-18670232 MS.gene044386:CDS 45.0%
GATGTGGATGTTCCAGTTGT+TGG + chr8.4:18669918-18669937 MS.gene044386:CDS 45.0%
GCTCATACTCACTCAATCCT+TGG - chr8.4:18670271-18670290 None:intergenic 45.0%
TCAGAGTCACATCTGAGAGA+TGG - chr8.4:18669291-18669310 None:intergenic 45.0%
TCAGGCATCCTACAAAGTAG+CGG + chr8.4:18669410-18669429 MS.gene044386:CDS 45.0%
TCCTACAAAGTAGCGGTTCT+TGG + chr8.4:18669417-18669436 MS.gene044386:CDS 45.0%
TCTCATCAAGATGTCGCCTT+TGG + chr8.4:18669473-18669492 MS.gene044386:CDS 45.0%
TGAGTATGAGCAGAAGGCTT+TGG + chr8.4:18670280-18670299 MS.gene044386:CDS 45.0%
TTGCTCAGAAGAAGAACCTG+AGG + chr8.4:18669889-18669908 MS.gene044386:CDS 45.0%
! ACCAAGAACCGCTACTTTGT+AGG - chr8.4:18669421-18669440 None:intergenic 45.0%
! CAACACCCCTTCGAAAGTTT+TGG + chr8.4:18669560-18669579 MS.gene044386:CDS 45.0%
! GAACCTGAGGTTGATTGATG+TGG + chr8.4:18669902-18669921 MS.gene044386:CDS 45.0%
! GATGTTGTTGTTATCCCTGC+TGG + chr8.4:18669627-18669646 MS.gene044386:CDS 45.0%
!! AGGGTCTGCTACTTTGTCAA+TGG + chr8.4:18670079-18670098 MS.gene044386:CDS 45.0%
!! ATCTTGATGAGAAGTGCCAG+TGG - chr8.4:18669465-18669484 None:intergenic 45.0%
AACTGAGGTTGTTGAGGCGA+AGG + chr8.4:18670049-18670068 MS.gene044386:CDS 50.0%
AGATGCAGGTCGGAAACCAA+AGG - chr8.4:18669492-18669511 None:intergenic 50.0%
AGGAAGTGACCTCCCTGTTT+GGG - chr8.4:18669196-18669215 None:intergenic 50.0%
GATTGGTAGGAAAGGAGTCG+AGG + chr8.4:18670226-18670245 MS.gene044386:CDS 50.0%
GTCACATCTGAGAGATGGCA+TGG - chr8.4:18669286-18669305 None:intergenic 50.0%
GTGGATGTTCCAGTTGTTGG+AGG + chr8.4:18669921-18669940 MS.gene044386:CDS 50.0%
TCGTCTCTTCGTGCACTTGA+CGG + chr8.4:18670128-18670147 MS.gene044386:CDS 50.0%
TGCAAAAGTTGCACGCAGAG+CGG - chr8.4:18669343-18669362 None:intergenic 50.0%
TGCTGGAACTGAGGTTGTTG+AGG + chr8.4:18670043-18670062 MS.gene044386:CDS 50.0%
TGCTGGTATAGTCAGGGACT+TGG + chr8.4:18669698-18669717 MS.gene044386:CDS 50.0%
TTATCCCTGCTGGTGTTCCT+AGG + chr8.4:18669637-18669656 MS.gene044386:CDS 50.0%
! ACTTAAGGCCAGCATCGAGA+AGG + chr8.4:18670319-18670338 MS.gene044386:CDS 50.0%
! CTTAAGGCCAGCATCGAGAA+GGG + chr8.4:18670320-18670339 MS.gene044386:CDS 50.0%
! GCTACTTTGTAGGATGCCTG+AGG - chr8.4:18669411-18669430 None:intergenic 50.0%
! TGAGAGATGGCATGGCTTTG+AGG - chr8.4:18669278-18669297 None:intergenic 50.0%
! TTAAGGCCAGCATCGAGAAG+GGG + chr8.4:18670321-18670340 MS.gene044386:CDS 50.0%
!! TCGATGCTGGCCTTAAGTTC+TGG - chr8.4:18670317-18670336 None:intergenic 50.0%
AAGGTCGTCACGAGTCATGC+CGG - chr8.4:18669667-18669686 None:intergenic 55.0%
AAGTGACCTCCCTGTTTGGG+TGG - chr8.4:18669193-18669212 None:intergenic 55.0%
ATGCCTGAGGCTGCAAGTTG+CGG - chr8.4:18669398-18669417 None:intergenic 55.0%
CAGTTGTTGGAGGTCATGCC+GGG + chr8.4:18669931-18669950 MS.gene044386:CDS 55.0%
CCAGTTGTTGGAGGTCATGC+CGG + chr8.4:18669930-18669949 MS.gene044386:CDS 55.0%
GAGGAAGTGACCTCCCTGTT+TGG - chr8.4:18669197-18669216 None:intergenic 55.0%
GCAAGTTGCGGGTGAGGTTT+CGG - chr8.4:18669386-18669405 None:intergenic 55.0%
GCTTCCTAGGAACACCAGCA+GGG - chr8.4:18669644-18669663 None:intergenic 55.0%
TTGGAACCACCCAAACAGGG+AGG + chr8.4:18669184-18669203 MS.gene044386:CDS 55.0%
! TAAGGCCAGCATCGAGAAGG+GGG + chr8.4:18670322-18670341 MS.gene044386:CDS 55.0%
!! CATGGCTTTGAGGCCAGAGA+AGG - chr8.4:18669268-18669287 None:intergenic 55.0%
AGCAACCCCCTTCTCGATGC+TGG - chr8.4:18670330-18670349 None:intergenic 60.0%
AGGTCGTCACGAGTCATGCC+GGG - chr8.4:18669666-18669685 None:intergenic 60.0%
CCGGCATGACCTCCAACAAC+TGG - chr8.4:18669933-18669952 None:intergenic 60.0%
GAGGTTGTTGAGGCGAAGGC+TGG + chr8.4:18670053-18670072 MS.gene044386:CDS 60.0%
GCTGGTGTTCCTAGGAAGCC+CGG + chr8.4:18669645-18669664 MS.gene044386:CDS 60.0%
GGCTTCCTAGGAACACCAGC+AGG - chr8.4:18669645-18669664 None:intergenic 60.0%
TGCCTGAGGCTGCAAGTTGC+GGG - chr8.4:18669397-18669416 None:intergenic 60.0%
TTGAGGCGAAGGCTGGTGCA+GGG + chr8.4:18670060-18670079 MS.gene044386:CDS 60.0%
!! AGGAGGGATTGGTCAGCCAC+TGG + chr8.4:18669446-18669465 MS.gene044386:CDS 60.0%
!! CGGTTCTTGGTGCTGCAGGA+GGG + chr8.4:18669430-18669449 MS.gene044386:CDS 60.0%
!! CTTGGTGCTGCAGGAGGGAT+TGG + chr8.4:18669435-18669454 MS.gene044386:CDS 60.0%
!! GTAGCGGTTCTTGGTGCTGC+AGG + chr8.4:18669426-18669445 MS.gene044386:CDS 60.0%
CACCCGCAACTTGCAGCCTC+AGG + chr8.4:18669392-18669411 MS.gene044386:CDS 65.0%
CGAGTCATGCCGGGCTTCCT+AGG - chr8.4:18669657-18669676 None:intergenic 65.0%
GAGGCTGCAAGTTGCGGGTG+AGG - chr8.4:18669392-18669411 None:intergenic 65.0%
GTTGAGGCGAAGGCTGGTGC+AGG + chr8.4:18670059-18670078 MS.gene044386:CDS 65.0%
!! GCGGTTCTTGGTGCTGCAGG+AGG + chr8.4:18669429-18669448 MS.gene044386:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 18669153 18670379 18669153 ID=MS.gene044386
chr8.4 mRNA 18669153 18670379 18669153 ID=MS.gene044386.t1;Parent=MS.gene044386
chr8.4 exon 18669153 18670379 18669153 ID=MS.gene044386.t1.exon1;Parent=MS.gene044386.t1
chr8.4 CDS 18669153 18670379 18669153 ID=cds.MS.gene044386.t1;Parent=MS.gene044386.t1
Gene Sequence

>MS.gene044386

ATGGCGGCAGCAGCATCAGCTACTTTTACTATTGGAACCACCCAAACAGGGAGGTCACTTCCTCAATCTAGTCCTTTTGGTTTGAAATTCAATTCCCAGGTTAATTTCAACACCTTCTCTGGCCTCAAAGCCATGCCATCTCTCAGATGTGACTCTGAATCATCTTTCTCTGGCAAAGAAACTTGTGCCGCTCTGCGTGCAACTTTTGCACCCAAAGCTCAAAAGGAAAACCGAAACCTCACCCGCAACTTGCAGCCTCAGGCATCCTACAAAGTAGCGGTTCTTGGTGCTGCAGGAGGGATTGGTCAGCCACTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCCGACCTGCATCTCTATGATATTGCGAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACCCCTTCGAAAGTTTTGGATTTCACAGGTGCTTCTGAGTTAGCAAATTGTTTGAAAGGTGTGGATGTTGTTGTTATCCCTGCTGGTGTTCCTAGGAAGCCCGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGTATAGTCAGGGACTTGGTCACTGCCGTTGCAGATAATTGCCCCAATGCTTTTATTCATATTATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCTGAAATTCTAAAACAGAAGGGTGTCTATGATCCTAAGAAGCTCTTTGGTGTTTCTACACTTGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAACCTGAGGTTGATTGATGTGGATGTTCCAGTTGTTGGAGGTCATGCCGGGATTACAATTCTTCCTCTCTTGTCAAAGACAAAACCCTCAGTGAGTTTCACTGATGAAGAAATTGAGGAGCTAACTGTCAGGATTCAAAATGCTGGAACTGAGGTTGTTGAGGCGAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCTTATGCAGCAGCAAGATTTGTTGAATCGTCTCTTCGTGCACTTGACGGAGACGCTGATGTGTATGAGTGCTCATTCGTACAGTCAGATCTGACCGACCTTCCGTTTTTTGCTTCAAGGGTGAAGATTGGTAGGAAAGGAGTCGAGGCTTTAATTCCAACTGATCTCCAAGGATTGAGTGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTTAAGGCCAGCATCGAGAAGGGGGTTGCTTTTGCTCAAAAGCAAACTGTTACTGCTTAG
Protein sequence

>MS.gene044386.t1

MAAAASATFTIGTTQTGRSLPQSSPFGLKFNSQVNFNTFSGLKAMPSLRCDSESSFSGKETCAALRATFAPKAQKENRNLTRNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVLDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPNAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVSFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGVAFAQKQTVTA