Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044460.t1 | XP_013458009.1 | 94.4 | 250 | 14 | 0 | 1 | 250 | 76 | 325 | 1.20E-128 | 469.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044460.t1 | Q9FZ81 | 63.7 | 248 | 82 | 3 | 6 | 250 | 92 | 334 | 2.4e-80 | 300.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044460.t1 | A0A072V1P2 | 94.4 | 250 | 14 | 0 | 1 | 250 | 76 | 325 | 8.9e-129 | 469.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044460 | MS.gene056860 | PPI |
| MS.gene81779 | MS.gene044460 | PPI |
| MS.gene044460 | MS.gene81729 | PPI |
| MS.gene044460 | MS.gene034886 | PPI |
| MS.gene044460 | MS.gene81728 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044460.t1 | MTR_4g109700 | 94.400 | 250 | 14 | 0 | 1 | 250 | 76 | 325 | 1.34e-172 | 478 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044460.t1 | AT1G18600 | 63.710 | 248 | 82 | 3 | 6 | 250 | 92 | 334 | 4.92e-98 | 290 |
| MS.gene044460.t1 | AT1G74130 | 41.818 | 220 | 117 | 5 | 39 | 250 | 104 | 320 | 7.99e-53 | 174 |
| MS.gene044460.t1 | AT1G74140 | 40.991 | 222 | 110 | 8 | 39 | 250 | 110 | 320 | 1.16e-43 | 150 |
| MS.gene044460.t1 | AT1G74140 | 40.991 | 222 | 107 | 8 | 39 | 250 | 110 | 317 | 4.81e-43 | 148 |
| MS.gene044460.t1 | AT1G74130 | 40.741 | 189 | 103 | 4 | 39 | 221 | 104 | 289 | 5.51e-42 | 145 |
| MS.gene044460.t1 | AT1G74140 | 39.091 | 220 | 103 | 7 | 39 | 250 | 110 | 306 | 6.91e-40 | 140 |
| MS.gene044460.t1 | AT1G74140 | 37.838 | 222 | 98 | 8 | 39 | 250 | 110 | 301 | 2.27e-32 | 120 |
| MS.gene044460.t1 | AT1G74140 | 37.838 | 222 | 95 | 8 | 39 | 250 | 110 | 298 | 6.84e-32 | 119 |
Find 48 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAGATTGCAAGTAAATT+TGG | 0.127860 | 8.1:+15980586 | MS.gene044460:intron |
| ATGCTTGGACTCTACTTCTT+TGG | 0.221067 | 8.1:+15979510 | MS.gene044460:CDS |
| GACACCAGATGACGTGGTTC+TGG | 0.230010 | 8.1:+15978822 | MS.gene044460:CDS |
| GACAGAACTACATTTCAAAT+TGG | 0.283737 | 8.1:+15978251 | MS.gene044460:CDS |
| ACCAGTTCCTGCGGCGTTGC+TGG | 0.311615 | 8.1:+15981688 | MS.gene044460:CDS |
| CTATATCTTGCTGGCGCAAT+TGG | 0.317104 | 8.1:+15980628 | MS.gene044460:CDS |
| TATAGCTTCAGCAGAAATTC+AGG | 0.326477 | 8.1:-15980610 | None:intergenic |
| ATCAGATTGCAAGTAAATTT+GGG | 0.330197 | 8.1:+15980587 | MS.gene044460:intron |
| CTTTGATGTTAGAGACTTGT+AGG | 0.345445 | 8.1:-15980680 | None:intergenic |
| GCAGGAGATTGTGGCTAAAC+AGG | 0.348440 | 8.1:+15978797 | MS.gene044460:intron |
| CTGCTGAAGCTATATCTTGC+TGG | 0.359474 | 8.1:+15980619 | MS.gene044460:CDS |
| GATATCAGGATCTGCACATT+TGG | 0.362814 | 8.1:+15982362 | MS.gene044460:CDS |
| GCTACGATCAATGATGCTTT+TGG | 0.365535 | 8.1:-15978206 | None:intergenic |
| TAGGGAGACAGTGCGATATC+AGG | 0.388761 | 8.1:+15982348 | MS.gene044460:intron |
| TTCAAGTATATAGTTGCTCT+TGG | 0.389439 | 8.1:-15981656 | None:intergenic |
| ACACCAGATGACGTGGTTCT+GGG | 0.403748 | 8.1:+15978823 | MS.gene044460:CDS |
| CATTTAATGTCCAACATGCT+TGG | 0.418509 | 8.1:+15979495 | MS.gene044460:CDS |
| AACCCCAGAACCACGTCATC+TGG | 0.431625 | 8.1:-15978826 | None:intergenic |
| CTGTCGATGAAAATGAACTC+TGG | 0.434382 | 8.1:-15978233 | None:intergenic |
| ACCAGCAACGCCGCAGGAAC+TGG | 0.440265 | 8.1:-15981689 | None:intergenic |
| ATATCAGGATCTGCACATTT+GGG | 0.448175 | 8.1:+15982363 | MS.gene044460:CDS |
| CCATAGCATGGTCAAGAGTT+CGG | 0.457547 | 8.1:+15982403 | MS.gene044460:CDS |
| TCTTGTTTGCAACAGGGCTA+TGG | 0.467275 | 8.1:+15981046 | MS.gene044460:intron |
| TATCTTGCTGGCGCAATTGG+TGG | 0.476126 | 8.1:+15980631 | MS.gene044460:CDS |
| ATATAGTTGCTCTTGGATTG+AGG | 0.494470 | 8.1:-15981649 | None:intergenic |
| ACAGGGCTATGGCGCGATCA+AGG | 0.496297 | 8.1:+15981057 | MS.gene044460:intron |
| GGCTTCAAAGGATTTAGCAT+TGG | 0.497089 | 8.1:+15981078 | MS.gene044460:CDS |
| TGTCGATGAAAATGAACTCT+GGG | 0.511770 | 8.1:-15978232 | None:intergenic |
| CCGAACTCTTGACCATGCTA+TGG | 0.521181 | 8.1:-15982403 | None:intergenic |
| CATGTTGGACATTAAATGCC+AGG | 0.532362 | 8.1:-15979490 | None:intergenic |
| TCCAATGATTAGGGAGCAAG+TGG | 0.538219 | 8.1:+15981593 | MS.gene044460:intron |
| CATTCAGTCATGTAGATGCC+TGG | 0.544602 | 8.1:+15979472 | MS.gene044460:CDS |
| AGATATGCTGAGGATAATAG+AGG | 0.557356 | 8.1:+15981831 | MS.gene044460:CDS |
| ATAATTCGTATCGGAGTGGT+TGG | 0.559072 | 8.1:+15978278 | MS.gene044460:CDS |
| CTACAAGTCTCTAACATCAA+AGG | 0.563755 | 8.1:+15980681 | MS.gene044460:CDS |
| GAAGTAGAGTCCAAGCATGT+TGG | 0.565236 | 8.1:-15979505 | None:intergenic |
| CAGCTTACCAGCAACGCCGC+AGG | 0.572037 | 8.1:-15981695 | None:intergenic |
| TGGCGCGATCAAGGCTTCAA+AGG | 0.573750 | 8.1:+15981066 | MS.gene044460:CDS |
| ATCTACATGACTGAATGCAT+TGG | 0.587624 | 8.1:-15979466 | None:intergenic |
| TCTTTAGACAATATTAAGAG+TGG | 0.590600 | 8.1:+15979423 | MS.gene044460:CDS |
| TGATCGGAAAAGATATGCTG+AGG | 0.592421 | 8.1:+15981821 | MS.gene044460:CDS |
| ATTGGAATAATAATTCGTAT+CGG | 0.595875 | 8.1:+15978269 | MS.gene044460:CDS |
| CACCAGATGACGTGGTTCTG+GGG | 0.602466 | 8.1:+15978824 | MS.gene044460:CDS |
| TTGCAGTTGCAGCCATAGCA+TGG | 0.613540 | 8.1:+15982391 | MS.gene044460:CDS |
| TCAGGATCTGCACATTTGGG+TGG | 0.628970 | 8.1:+15982366 | MS.gene044460:CDS |
| CAGGCTGACACCAGATGACG+TGG | 0.635192 | 8.1:+15978816 | MS.gene044460:CDS |
| AATAATAATTCGTATCGGAG+TGG | 0.642796 | 8.1:+15978274 | MS.gene044460:CDS |
| GCATGGTCAAGAGTTCGGAA+AGG | 0.680049 | 8.1:+15982408 | MS.gene044460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTATTAAA+AGG | - | chr8.1:15982206-15982225 | None:intergenic | 0.0% |
| !! | TTTATTAAAAGGAAAAATAA+AGG | - | chr8.1:15982195-15982214 | None:intergenic | 10.0% |
| !!! | CAAAAAAAAAATTGATAATA+AGG | - | chr8.1:15981501-15981520 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAAAAAAAATTCT+GGG | + | chr8.1:15980751-15980770 | MS.gene044460:intron | 10.0% |
| !!! | TTTCTTTTTAAAAAAAATTC+TGG | + | chr8.1:15980750-15980769 | MS.gene044460:intron | 10.0% |
| !! | AATAAAACATATTAATCAGA+AGG | - | chr8.1:15980163-15980182 | None:intergenic | 15.0% |
| !! | ATGTTGTTAAATAAAAATCA+GGG | - | chr8.1:15978555-15978574 | None:intergenic | 15.0% |
| !! | ATTCAAAAATCAAATTGAAT+AGG | + | chr8.1:15981273-15981292 | MS.gene044460:intron | 15.0% |
| !! | CTAACATTATAAATAATTGT+TGG | + | chr8.1:15982314-15982333 | MS.gene044460:intron | 15.0% |
| !!! | ACATAATTTAAAACCTAAAA+TGG | - | chr8.1:15981316-15981335 | None:intergenic | 15.0% |
| !!! | ACTTATTATTCTTTGTTTTA+TGG | - | chr8.1:15979664-15979683 | None:intergenic | 15.0% |
| !!! | TAAAAAGAAAGTTTTAGAAT+TGG | - | chr8.1:15980740-15980759 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTCATTATAATT+TGG | + | chr8.1:15978361-15978380 | MS.gene044460:intron | 15.0% |
| !!! | TTATTCATTTTATAACTTCT+TGG | + | chr8.1:15980178-15980197 | MS.gene044460:intron | 15.0% |
| !! | AAAGTTAATATTTACACTCT+TGG | + | chr8.1:15980939-15980958 | MS.gene044460:intron | 20.0% |
| !! | AACAAAATATTACTAAGGTA+AGG | - | chr8.1:15979609-15979628 | None:intergenic | 20.0% |
| !! | AATTGTGTAAATAAGTTTCA+TGG | + | chr8.1:15981352-15981371 | MS.gene044460:intron | 20.0% |
| !! | ACAAAGAATAATAAGTCATA+TGG | + | chr8.1:15979668-15979687 | MS.gene044460:intron | 20.0% |
| !! | ATACAGAAATTTCATAACAA+TGG | - | chr8.1:15982066-15982085 | None:intergenic | 20.0% |
| !! | ATCAAATTAGTAATTGTTTC+TGG | + | chr8.1:15979281-15979300 | MS.gene044460:intron | 20.0% |
| !! | ATTGGAATAATAATTCGTAT+CGG | + | chr8.1:15978269-15978288 | MS.gene044460:CDS | 20.0% |
| !! | ATTTGATAAACCAAAATAAC+AGG | - | chr8.1:15979011-15979030 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAATATTACTA+AGG | - | chr8.1:15979614-15979633 | None:intergenic | 20.0% |
| !! | GAAAAGGAAAAATATGAAAT+AGG | - | chr8.1:15980120-15980139 | None:intergenic | 20.0% |
| !! | GATGTTGTTAAATAAAAATC+AGG | - | chr8.1:15978556-15978575 | None:intergenic | 20.0% |
| !! | TGATCTATTACTATTATCTT+TGG | + | chr8.1:15979085-15979104 | MS.gene044460:intron | 20.0% |
| !! | TGTCATTCAACTAAAATATT+AGG | - | chr8.1:15979205-15979224 | None:intergenic | 20.0% |
| !! | TTACATATAAAGCAAATGTA+GGG | - | chr8.1:15978982-15979001 | None:intergenic | 20.0% |
| !! | TTCTATCCTCAATAAAAATA+AGG | - | chr8.1:15979130-15979149 | None:intergenic | 20.0% |
| !!! | AAAAAATATCTGAAGTTCTT+AGG | + | chr8.1:15979754-15979773 | MS.gene044460:intron | 20.0% |
| !!! | AAAAACAAAGCATTAACATT+TGG | + | chr8.1:15982291-15982310 | MS.gene044460:intron | 20.0% |
| !!! | AAGATTGAAATTTTCGAATT+TGG | - | chr8.1:15978464-15978483 | None:intergenic | 20.0% |
| !!! | AGTAATATTTTGTTTTAGGT+TGG | + | chr8.1:15979615-15979634 | MS.gene044460:intron | 20.0% |
| !!! | ATGTTGCTGTTTTTTTATTT+TGG | + | chr8.1:15978860-15978879 | MS.gene044460:CDS | 20.0% |
| !!! | ATGTTTTCTCTTTAATTTTC+TGG | + | chr8.1:15980076-15980095 | MS.gene044460:intron | 20.0% |
| !!! | ATTTTTCCTTTTCTTTTTGT+AGG | + | chr8.1:15980127-15980146 | MS.gene044460:intron | 20.0% |
| !!! | CCTTAGTAATATTTTGTTTT+AGG | + | chr8.1:15979611-15979630 | MS.gene044460:intron | 20.0% |
| !!! | TCATTTTCTTAAATTACAAC+CGG | - | chr8.1:15978633-15978652 | None:intergenic | 20.0% |
| !!! | TGTATAATTTGTATTATTGC+AGG | + | chr8.1:15979058-15979077 | MS.gene044460:intron | 20.0% |
| !!! | TGTTTTCTCTTTAATTTTCT+GGG | + | chr8.1:15980077-15980096 | MS.gene044460:intron | 20.0% |
| ! | AAAAACTGAAATTTGCAAGT+TGG | + | chr8.1:15981739-15981758 | MS.gene044460:intron | 25.0% |
| ! | AACCTAAAATGGAATTTATG+AGG | - | chr8.1:15981305-15981324 | None:intergenic | 25.0% |
| ! | AAGTACTATCTACTAATTGT+TGG | + | chr8.1:15980270-15980289 | MS.gene044460:intron | 25.0% |
| ! | AATAAAATTATGGCGAATCA+AGG | + | chr8.1:15981789-15981808 | MS.gene044460:intron | 25.0% |
| ! | AATCTAAAGACAAAAGTGAT+TGG | - | chr8.1:15979995-15980014 | None:intergenic | 25.0% |
| ! | AGTACTATCTACTAATTGTT+GGG | + | chr8.1:15980271-15980290 | MS.gene044460:intron | 25.0% |
| ! | AGTCATATGGTTATGAAATT+TGG | + | chr8.1:15979681-15979700 | MS.gene044460:intron | 25.0% |
| ! | ATAAAATTATGGCGAATCAA+GGG | + | chr8.1:15981790-15981809 | MS.gene044460:intron | 25.0% |
| ! | ATATTACTAAGGTAAGGAAA+AGG | - | chr8.1:15979603-15979622 | None:intergenic | 25.0% |
| ! | ATCAGATTGCAAGTAAATTT+GGG | + | chr8.1:15980587-15980606 | MS.gene044460:intron | 25.0% |
| ! | ATCAGTAATATGAGAATTGA+GGG | - | chr8.1:15980346-15980365 | None:intergenic | 25.0% |
| ! | ATGGAAAATGCTATGAAAAA+AGG | - | chr8.1:15981904-15981923 | None:intergenic | 25.0% |
| ! | CATAAACCTACAAAAAGAAA+AGG | - | chr8.1:15980136-15980155 | None:intergenic | 25.0% |
| ! | CTCGAAATTTGTAGAAATTA+TGG | - | chr8.1:15981996-15982015 | None:intergenic | 25.0% |
| ! | GTTACATATAAAGCAAATGT+AGG | - | chr8.1:15978983-15979002 | None:intergenic | 25.0% |
| ! | TATCAGTAATATGAGAATTG+AGG | - | chr8.1:15980347-15980366 | None:intergenic | 25.0% |
| ! | TATGTAATTACTGATGTTCT+TGG | + | chr8.1:15981160-15981179 | MS.gene044460:intron | 25.0% |
| ! | TCAGATTGTAAACAAATGAA+CGG | - | chr8.1:15978329-15978348 | None:intergenic | 25.0% |
| ! | TCTCTTGAAAATTGTTTGTT+TGG | + | chr8.1:15979840-15979859 | MS.gene044460:intron | 25.0% |
| ! | TCTGCTGTGTAATAAAATTA+TGG | + | chr8.1:15981779-15981798 | MS.gene044460:intron | 25.0% |
| ! | TCTTTAGACAATATTAAGAG+TGG | + | chr8.1:15979423-15979442 | MS.gene044460:CDS | 25.0% |
| ! | TGCAGAGAAAAACAAATAAA+TGG | - | chr8.1:15980510-15980529 | None:intergenic | 25.0% |
| ! | TGGTTTATCAAATGTTTCTT+AGG | + | chr8.1:15979018-15979037 | MS.gene044460:intron | 25.0% |
| ! | TTAAAGGTTAATGAAGCTAA+TGG | - | chr8.1:15980547-15980566 | None:intergenic | 25.0% |
| ! | TTTAAATTATGTTTCCTCTG+TGG | + | chr8.1:15981324-15981343 | MS.gene044460:intron | 25.0% |
| !! | ATTTAGTTTAGGGTTTATGA+GGG | + | chr8.1:15978390-15978409 | MS.gene044460:intron | 25.0% |
| !! | ATTTTATTACACAGCAGAAA+AGG | - | chr8.1:15981777-15981796 | None:intergenic | 25.0% |
| !!! | ATATAATTTGTCCTTTTTGC+AGG | + | chr8.1:15978779-15978798 | MS.gene044460:intron | 25.0% |
| !!! | ATTGTTGGTTTTCAAATTGT+AGG | + | chr8.1:15982329-15982348 | MS.gene044460:intron | 25.0% |
| !!! | CATTTATTTGCCTTACTTTT+TGG | + | chr8.1:15980411-15980430 | MS.gene044460:intron | 25.0% |
| !!! | CTCTTACCTTATTTTTATTG+AGG | + | chr8.1:15979121-15979140 | MS.gene044460:intron | 25.0% |
| !!! | TTAATGCTTTGTTTTTGAGA+AGG | - | chr8.1:15982287-15982306 | None:intergenic | 25.0% |
| !!! | TTGTTAGTCTTCTTATAGTT+AGG | + | chr8.1:15981438-15981457 | MS.gene044460:intron | 25.0% |
| !!! | TTGTTGGTTTTCAAATTGTA+GGG | + | chr8.1:15982330-15982349 | MS.gene044460:intron | 25.0% |
| AAAAAAAACAGCTACTTACC+AGG | + | chr8.1:15982223-15982242 | MS.gene044460:intron | 30.0% | |
| AAAAAAACAGCTACTTACCA+GGG | + | chr8.1:15982224-15982243 | MS.gene044460:intron | 30.0% | |
| AAAAATTCTGGGTGAAACAA+AGG | + | chr8.1:15980762-15980781 | MS.gene044460:intron | 30.0% | |
| AAACTCAAATTCCACATGTA+AGG | - | chr8.1:15980243-15980262 | None:intergenic | 30.0% | |
| AAATCATCTGACAAATGAAG+CGG | - | chr8.1:15979894-15979913 | None:intergenic | 30.0% | |
| AAATCTAACACCTAGTAACA+AGG | - | chr8.1:15980207-15980226 | None:intergenic | 30.0% | |
| AACCTTTAACTCTTTCCAAT+TGG | + | chr8.1:15980558-15980577 | MS.gene044460:intron | 30.0% | |
| AACTCAAATTCCACATGTAA+GGG | - | chr8.1:15980242-15980261 | None:intergenic | 30.0% | |
| AAGCTAATGGTACAAATAAC+TGG | - | chr8.1:15980534-15980553 | None:intergenic | 30.0% | |
| AATAATAATTCGTATCGGAG+TGG | + | chr8.1:15978274-15978293 | MS.gene044460:CDS | 30.0% | |
| ACAAGAATACAAGATTGACA+GGG | - | chr8.1:15981866-15981885 | None:intergenic | 30.0% | |
| ACATGAACTTTCCAATGATT+AGG | + | chr8.1:15981583-15981602 | MS.gene044460:intron | 30.0% | |
| ACCTTTAACTCTTTCCAATT+GGG | + | chr8.1:15980559-15980578 | MS.gene044460:intron | 30.0% | |
| ACTAAAATATTAGGATGCTC+TGG | - | chr8.1:15979196-15979215 | None:intergenic | 30.0% | |
| ATATTGACATTTCTGCGATT+TGG | - | chr8.1:15981418-15981437 | None:intergenic | 30.0% | |
| ATCCATATATCAAAGGTTTG+AGG | - | chr8.1:15980862-15980881 | None:intergenic | 30.0% | |
| CAGATTGTAAACAAATGAAC+GGG | - | chr8.1:15978328-15978347 | None:intergenic | 30.0% | |
| CATGAACTTTCCAATGATTA+GGG | + | chr8.1:15981584-15981603 | MS.gene044460:intron | 30.0% | |
| GACAGAACTACATTTCAAAT+TGG | + | chr8.1:15978251-15978270 | MS.gene044460:CDS | 30.0% | |
| GATAAACCAAAATAACAGGT+GGG | - | chr8.1:15979007-15979026 | None:intergenic | 30.0% | |
| GATCAGATTGCAAGTAAATT+TGG | + | chr8.1:15980586-15980605 | MS.gene044460:intron | 30.0% | |
| GGTAATCTAGATAGATTATC+AGG | + | chr8.1:15979775-15979794 | MS.gene044460:intron | 30.0% | |
| TAAAATTATGGCGAATCAAG+GGG | + | chr8.1:15981791-15981810 | MS.gene044460:intron | 30.0% | |
| TACAAGAATACAAGATTGAC+AGG | - | chr8.1:15981867-15981886 | None:intergenic | 30.0% | |
| TCAAATTGATGCAATCTAGT+AGG | + | chr8.1:15982035-15982054 | MS.gene044460:intron | 30.0% | |
| TCAGTAATATGAGAATTGAG+GGG | - | chr8.1:15980345-15980364 | None:intergenic | 30.0% | |
| TCGAGAAATCCATATATCAA+AGG | - | chr8.1:15980869-15980888 | None:intergenic | 30.0% | |
| TGATAAACCAAAATAACAGG+TGG | - | chr8.1:15979008-15979027 | None:intergenic | 30.0% | |
| TGTTACTAGGTGTTAGATTT+AGG | + | chr8.1:15980207-15980226 | MS.gene044460:intron | 30.0% | |
| TTCAAGTATATAGTTGCTCT+TGG | - | chr8.1:15981659-15981678 | None:intergenic | 30.0% | |
| TTTCGAATTTGGTAAAATCC+AGG | - | chr8.1:15978453-15978472 | None:intergenic | 30.0% | |
| TTTGAATAGAAGAGTCTTCA+AGG | - | chr8.1:15981260-15981279 | None:intergenic | 30.0% | |
| ! | GATTTAGTTTAGGGTTTATG+AGG | + | chr8.1:15978389-15978408 | MS.gene044460:intron | 30.0% |
| ! | TAGGCTTTTACGTGTTATAT+GGG | + | chr8.1:15978747-15978766 | MS.gene044460:intron | 30.0% |
| ! | TGCCTCATAAATTCCATTTT+AGG | + | chr8.1:15981300-15981319 | MS.gene044460:intron | 30.0% |
| ! | TTAGGCTTTTACGTGTTATA+TGG | + | chr8.1:15978746-15978765 | MS.gene044460:intron | 30.0% |
| ! | TTCATCTGTTATTTAACACC+TGG | + | chr8.1:15978432-15978451 | MS.gene044460:intron | 30.0% |
| ! | TTGGACTGAGATTTAGTTTA+GGG | + | chr8.1:15978380-15978399 | MS.gene044460:intron | 30.0% |
| ! | TTTATGAGCAATGTGTTTTG+AGG | + | chr8.1:15981202-15981221 | MS.gene044460:intron | 30.0% |
| ! | TTTGGACTGAGATTTAGTTT+AGG | + | chr8.1:15978379-15978398 | MS.gene044460:intron | 30.0% |
| !! | TTATGAGCAATGTGTTTTGA+GGG | + | chr8.1:15981203-15981222 | MS.gene044460:intron | 30.0% |
| !!! | AAGTTTTAGAATTGGCAGAA+AGG | - | chr8.1:15980732-15980751 | None:intergenic | 30.0% |
| !!! | GACAATTTTTTTCTAGCATC+TGG | - | chr8.1:15980814-15980833 | None:intergenic | 30.0% |
| AAATAAGTTTCATGGCCTGT+GGG | + | chr8.1:15981360-15981379 | MS.gene044460:intron | 35.0% | |
| ACTCAAATTCCACATGTAAG+GGG | - | chr8.1:15980241-15980260 | None:intergenic | 35.0% | |
| ACTGTGTGTACCAAAAAGTA+AGG | - | chr8.1:15980424-15980443 | None:intergenic | 35.0% | |
| AGATAGATTATCAGGCATTC+AGG | + | chr8.1:15979783-15979802 | MS.gene044460:intron | 35.0% | |
| AGATATGCTGAGGATAATAG+AGG | + | chr8.1:15981831-15981850 | MS.gene044460:CDS | 35.0% | |
| AGATGAAGTTAAATACGCAC+AGG | - | chr8.1:15979368-15979387 | None:intergenic | 35.0% | |
| AGCCTCAAACCTTTGATATA+TGG | + | chr8.1:15980857-15980876 | MS.gene044460:intron | 35.0% | |
| AGTAATCACATGTGTAGTGT+CGG | + | chr8.1:15978678-15978697 | MS.gene044460:intron | 35.0% | |
| AGTAGTTATGACTACGAGTT+TGG | - | chr8.1:15981958-15981977 | None:intergenic | 35.0% | |
| AGTGTCTTTCTAATCATCAC+TGG | - | chr8.1:15980708-15980727 | None:intergenic | 35.0% | |
| ATATAGTTGCTCTTGGATTG+AGG | - | chr8.1:15981652-15981671 | None:intergenic | 35.0% | |
| ATATCAGGATCTGCACATTT+GGG | + | chr8.1:15982363-15982382 | MS.gene044460:CDS | 35.0% | |
| ATCTACATGACTGAATGCAT+TGG | - | chr8.1:15979469-15979488 | None:intergenic | 35.0% | |
| CATTTAATGTCCAACATGCT+TGG | + | chr8.1:15979495-15979514 | MS.gene044460:CDS | 35.0% | |
| CTACAAGTCTCTAACATCAA+AGG | + | chr8.1:15980681-15980700 | MS.gene044460:CDS | 35.0% | |
| CTTTGATGTTAGAGACTTGT+AGG | - | chr8.1:15980683-15980702 | None:intergenic | 35.0% | |
| GTGCTGCGAAAGAAAAATAA+TGG | - | chr8.1:15982261-15982280 | None:intergenic | 35.0% | |
| TAAATAAGTTTCATGGCCTG+TGG | + | chr8.1:15981359-15981378 | MS.gene044460:intron | 35.0% | |
| TAATATGAGAATTGAGGGGA+TGG | - | chr8.1:15980341-15980360 | None:intergenic | 35.0% | |
| TAGAAAGATGGTGAAACAGA+CGG | + | chr8.1:15982129-15982148 | MS.gene044460:intron | 35.0% | |
| TATAGCTTCAGCAGAAATTC+AGG | - | chr8.1:15980613-15980632 | None:intergenic | 35.0% | |
| TCTGTTTCACCATCTTTCTA+CGG | - | chr8.1:15982129-15982148 | None:intergenic | 35.0% | |
| TGTCGATGAAAATGAACTCT+GGG | - | chr8.1:15978235-15978254 | None:intergenic | 35.0% | |
| TTCTTGGTATCCTTGTTACT+AGG | + | chr8.1:15980194-15980213 | MS.gene044460:intron | 35.0% | |
| ! | AATTTTCTGGGTCATATGAC+TGG | + | chr8.1:15980089-15980108 | MS.gene044460:intron | 35.0% |
| ! | ATCAAGGGGATCTTTTTGAT+CGG | + | chr8.1:15981805-15981824 | MS.gene044460:intron | 35.0% |
| ! | ATTTTCTGGGTCATATGACT+GGG | + | chr8.1:15980090-15980109 | MS.gene044460:intron | 35.0% |
| ! | TCAGTTTTTGACCTATCAGA+AGG | - | chr8.1:15981728-15981747 | None:intergenic | 35.0% |
| ! | TGAGGATAATAGAGGTATGA+TGG | + | chr8.1:15981839-15981858 | MS.gene044460:intron | 35.0% |
| !! | GTGGTTCTGTTTTCTATCTT+GGG | + | chr8.1:15980650-15980669 | MS.gene044460:CDS | 35.0% |
| !! | TAATGGTTTTCGTTTTTCCC+TGG | - | chr8.1:15982244-15982263 | None:intergenic | 35.0% |
| !!! | CTTTTTTATACCAGTTCCTG+CGG | + | chr8.1:15981679-15981698 | MS.gene044460:CDS | 35.0% |
| !!! | TTTTTTCTAGCATCTGGTGA+AGG | - | chr8.1:15980808-15980827 | None:intergenic | 35.0% |
| AACGGGTATAGAGAATGTGA+CGG | - | chr8.1:15978311-15978330 | None:intergenic | 40.0% | |
| AATAGTTGATTGACACCCAC+AGG | - | chr8.1:15981378-15981397 | None:intergenic | 40.0% | |
| ACTTCTTTGGATTGAGTGTG+CGG | + | chr8.1:15979523-15979542 | MS.gene044460:intron | 40.0% | |
| ATAATTCGTATCGGAGTGGT+TGG | + | chr8.1:15978278-15978297 | MS.gene044460:CDS | 40.0% | |
| ATGCTTGGACTCTACTTCTT+TGG | + | chr8.1:15979510-15979529 | MS.gene044460:CDS | 40.0% | |
| ATTAGGATGCTCTGGCTATT+TGG | - | chr8.1:15979188-15979207 | None:intergenic | 40.0% | |
| CAATCTGATCAAAGCCCAAT+TGG | - | chr8.1:15980576-15980595 | None:intergenic | 40.0% | |
| CAATTTCATCCTTCAACACC+TGG | - | chr8.1:15979319-15979338 | None:intergenic | 40.0% | |
| CACCTAAACCTTCTGATTGA+AGG | - | chr8.1:15978716-15978735 | None:intergenic | 40.0% | |
| CATGTTGGACATTAAATGCC+AGG | - | chr8.1:15979493-15979512 | None:intergenic | 40.0% | |
| CTCAAATTCCACATGTAAGG+GGG | - | chr8.1:15980240-15980259 | None:intergenic | 40.0% | |
| CTGTCGATGAAAATGAACTC+TGG | - | chr8.1:15978236-15978255 | None:intergenic | 40.0% | |
| CTGTTTCACCATCTTTCTAC+GGG | - | chr8.1:15982128-15982147 | None:intergenic | 40.0% | |
| GACAACTAAGCTACTTGAGA+TGG | - | chr8.1:15981923-15981942 | None:intergenic | 40.0% | |
| GATATCAGGATCTGCACATT+TGG | + | chr8.1:15982362-15982381 | MS.gene044460:CDS | 40.0% | |
| GCCCAATTGGAAAGAGTTAA+AGG | - | chr8.1:15980563-15980582 | None:intergenic | 40.0% | |
| GCTGTTATCTACCTTCTGAT+AGG | + | chr8.1:15981714-15981733 | MS.gene044460:intron | 40.0% | |
| GGCTTCAAAGGATTTAGCAT+TGG | + | chr8.1:15981078-15981097 | MS.gene044460:CDS | 40.0% | |
| TACACAATTGTGTTCCACAG+AGG | - | chr8.1:15981341-15981360 | None:intergenic | 40.0% | |
| TACACTAATCTACACGCTTC+AGG | - | chr8.1:15979255-15979274 | None:intergenic | 40.0% | |
| TGATCGGAAAAGATATGCTG+AGG | + | chr8.1:15981821-15981840 | MS.gene044460:CDS | 40.0% | |
| TTCTGGATTTGCACTTTACC+AGG | + | chr8.1:15979298-15979317 | MS.gene044460:intron | 40.0% | |
| ! | ATGAAGCACCAACACAGATA+CGG | + | chr8.1:15978585-15978604 | MS.gene044460:intron | 40.0% |
| ! | GCATTCAGGCTTGTTTGTTT+AGG | + | chr8.1:15979797-15979816 | MS.gene044460:intron | 40.0% |
| ! | GCTACGATCAATGATGCTTT+TGG | - | chr8.1:15978209-15978228 | None:intergenic | 40.0% |
| ! | TATCTGTGTTGGTGCTTCAT+AGG | - | chr8.1:15978585-15978604 | None:intergenic | 40.0% |
| ! | TCTGCATCTTGTTTGCAACA+GGG | + | chr8.1:15981040-15981059 | MS.gene044460:intron | 40.0% |
| ! | TTCAGGCTTGTTTGTTTAGG+TGG | + | chr8.1:15979800-15979819 | MS.gene044460:intron | 40.0% |
| ! | TTTAGGTGCTACAGAGGTTT+AGG | + | chr8.1:15978728-15978747 | MS.gene044460:intron | 40.0% |
| !! | ACGCAGCAAGCTTTTAGTTA+TGG | + | chr8.1:15979956-15979975 | MS.gene044460:intron | 40.0% |
| !! | GGTGGTTCTGTTTTCTATCT+TGG | + | chr8.1:15980649-15980668 | MS.gene044460:CDS | 40.0% |
| !! | GTAACACCCACCTGTTATTT+TGG | + | chr8.1:15978998-15979017 | MS.gene044460:intron | 40.0% |
| !! | TGAAACAGACGGCTTTGTTT+AGG | + | chr8.1:15982140-15982159 | MS.gene044460:intron | 40.0% |
| AATGACACTGTGAGACGTTC+CGG | + | chr8.1:15979218-15979237 | MS.gene044460:intron | 45.0% | |
| ACACGCTTCAGGCATGAATT+AGG | - | chr8.1:15979244-15979263 | None:intergenic | 45.0% | |
| AGCCACAATCTCCTGCAAAA+AGG | - | chr8.1:15978793-15978812 | None:intergenic | 45.0% | |
| AGTAGCTTAGTTGTCCGAGA+AGG | + | chr8.1:15981928-15981947 | MS.gene044460:intron | 45.0% | |
| ATTACCAGCTTCCGTTCTTC+AGG | + | chr8.1:15981122-15981141 | MS.gene044460:intron | 45.0% | |
| CATTCAGTCATGTAGATGCC+TGG | + | chr8.1:15979472-15979491 | MS.gene044460:CDS | 45.0% | |
| CCATAGCATGGTCAAGAGTT+CGG | + | chr8.1:15982403-15982422 | MS.gene044460:CDS | 45.0% | |
| CGCCTTCAATCAGAAGGTTT+AGG | + | chr8.1:15978711-15978730 | MS.gene044460:intron | 45.0% | |
| CTATATCTTGCTGGCGCAAT+TGG | + | chr8.1:15980628-15980647 | MS.gene044460:CDS | 45.0% | |
| CTGCTGAAGCTATATCTTGC+TGG | + | chr8.1:15980619-15980638 | MS.gene044460:CDS | 45.0% | |
| GAAGAAAACCCCCTTACATG+TGG | + | chr8.1:15980229-15980248 | MS.gene044460:intron | 45.0% | |
| GAAGTAGAGTCCAAGCATGT+TGG | - | chr8.1:15979508-15979527 | None:intergenic | 45.0% | |
| TCCAATGATTAGGGAGCAAG+TGG | + | chr8.1:15981593-15981612 | MS.gene044460:intron | 45.0% | |
| TCCACTTGCTCCCTAATCAT+TGG | - | chr8.1:15981597-15981616 | None:intergenic | 45.0% | |
| TGACACTCACATGTTGACAC+CGG | + | chr8.1:15978611-15978630 | MS.gene044460:intron | 45.0% | |
| TGTCAAGTCCGTATCTGTGT+TGG | - | chr8.1:15978596-15978615 | None:intergenic | 45.0% | |
| TTACCAGCTTCCGTTCTTCA+GGG | + | chr8.1:15981123-15981142 | MS.gene044460:intron | 45.0% | |
| ! | ACGAGTTTGGTGATCCTTCT+CGG | - | chr8.1:15981945-15981964 | None:intergenic | 45.0% |
| ! | AGAAGGTTTAGGTGCTACAG+AGG | + | chr8.1:15978722-15978741 | MS.gene044460:intron | 45.0% |
| ! | CTCTGCATCTTGTTTGCAAC+AGG | + | chr8.1:15981039-15981058 | MS.gene044460:intron | 45.0% |
| ! | GCTTTAAGCCCGTAGAAAGA+TGG | + | chr8.1:15982117-15982136 | MS.gene044460:intron | 45.0% |
| ! | GTCCTTTTTGCAGGAGATTG+TGG | + | chr8.1:15978788-15978807 | MS.gene044460:intron | 45.0% |
| ! | TCTTGTTTGCAACAGGGCTA+TGG | + | chr8.1:15981046-15981065 | MS.gene044460:intron | 45.0% |
| !! | AAAGCTTGCTGCGTGATTAC+TGG | - | chr8.1:15979950-15979969 | None:intergenic | 45.0% |
| !! | TGCACTTTACCAGGTGTTGA+AGG | + | chr8.1:15979307-15979326 | MS.gene044460:intron | 45.0% |
| !!! | GAGCAATGTGTTTTGAGGGA+AGG | + | chr8.1:15981207-15981226 | MS.gene044460:intron | 45.0% |
| !!! | AAAAAAAAAATTGATAATAA+GGG | - | chr8.1:15981500-15981519 | None:intergenic | 5.0% |
| ACACCAGATGACGTGGTTCT+GGG | + | chr8.1:15978823-15978842 | MS.gene044460:CDS | 50.0% | |
| AGAATTGAGGGGATGGCTAG+TGG | - | chr8.1:15980334-15980353 | None:intergenic | 50.0% | |
| CCGAACTCTTGACCATGCTA+TGG | - | chr8.1:15982406-15982425 | None:intergenic | 50.0% | |
| GCAGGAGATTGTGGCTAAAC+AGG | + | chr8.1:15978797-15978816 | MS.gene044460:intron | 50.0% | |
| GCATGGTCAAGAGTTCGGAA+AGG | + | chr8.1:15982408-15982427 | MS.gene044460:CDS | 50.0% | |
| GCTTCAGGCATGAATTAGGC+CGG | - | chr8.1:15979240-15979259 | None:intergenic | 50.0% | |
| GTCCTACACTCCCTGAAGAA+CGG | - | chr8.1:15981136-15981155 | None:intergenic | 50.0% | |
| TAGGGAGACAGTGCGATATC+AGG | + | chr8.1:15982348-15982367 | MS.gene044460:intron | 50.0% | |
| TATCTTGCTGGCGCAATTGG+TGG | + | chr8.1:15980631-15980650 | MS.gene044460:CDS | 50.0% | |
| TCAGGATCTGCACATTTGGG+TGG | + | chr8.1:15982366-15982385 | MS.gene044460:CDS | 50.0% | |
| TTGCAGTTGCAGCCATAGCA+TGG | + | chr8.1:15982391-15982410 | MS.gene044460:CDS | 50.0% | |
| ! | ACATGTGTAGTGTCGGACAC+CGG | + | chr8.1:15978685-15978704 | MS.gene044460:intron | 50.0% |
| ! | CTGCGATTTGGCGAACTTGA+TGG | - | chr8.1:15981406-15981425 | None:intergenic | 50.0% |
| ! | CTTCTGATTGAAGGCGTGTC+CGG | - | chr8.1:15978707-15978726 | None:intergenic | 50.0% |
| ! | TTCCGTTCTTCAGGGAGTGT+AGG | + | chr8.1:15981131-15981150 | MS.gene044460:intron | 50.0% |
| AACCCCAGAACCACGTCATC+TGG | - | chr8.1:15978829-15978848 | None:intergenic | 55.0% | |
| ACTCCCTGAAGAACGGAAGC+TGG | - | chr8.1:15981129-15981148 | None:intergenic | 55.0% | |
| CGGACACGCCTTCAATCAGA+AGG | + | chr8.1:15978705-15978724 | MS.gene044460:intron | 55.0% | |
| GACACCAGATGACGTGGTTC+TGG | + | chr8.1:15978822-15978841 | MS.gene044460:CDS | 55.0% | |
| TGGCGCGATCAAGGCTTCAA+AGG | + | chr8.1:15981066-15981085 | MS.gene044460:CDS | 55.0% | |
| ! | CACCAGATGACGTGGTTCTG+GGG | + | chr8.1:15978824-15978843 | MS.gene044460:CDS | 55.0% |
| ACAGGGCTATGGCGCGATCA+AGG | + | chr8.1:15981057-15981076 | MS.gene044460:intron | 60.0% | |
| CAGGCTGACACCAGATGACG+TGG | + | chr8.1:15978816-15978835 | MS.gene044460:CDS | 60.0% | |
| ACCAGCAACGCCGCAGGAAC+TGG | - | chr8.1:15981692-15981711 | None:intergenic | 65.0% | |
| ACCAGTTCCTGCGGCGTTGC+TGG | + | chr8.1:15981688-15981707 | MS.gene044460:CDS | 65.0% | |
| CAGCTTACCAGCAACGCCGC+AGG | - | chr8.1:15981698-15981717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15978175 | 15982440 | 15978175 | ID=MS.gene044460 |
| chr8.1 | mRNA | 15978175 | 15982440 | 15978175 | ID=MS.gene044460.t1;Parent=MS.gene044460 |
| chr8.1 | exon | 15978175 | 15978299 | 15978175 | ID=MS.gene044460.t1.exon1;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15978175 | 15978299 | 15978175 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15978801 | 15978921 | 15978801 | ID=MS.gene044460.t1.exon2;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15978801 | 15978921 | 15978801 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15979420 | 15979539 | 15979420 | ID=MS.gene044460.t1.exon3;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15979420 | 15979539 | 15979420 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15980592 | 15980702 | 15980592 | ID=MS.gene044460.t1.exon4;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15980592 | 15980702 | 15980592 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15981061 | 15981099 | 15981061 | ID=MS.gene044460.t1.exon5;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15981061 | 15981099 | 15981061 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15981605 | 15981709 | 15981605 | ID=MS.gene044460.t1.exon6;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15981605 | 15981709 | 15981605 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15981811 | 15981852 | 15981811 | ID=MS.gene044460.t1.exon7;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15981811 | 15981852 | 15981811 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| chr8.1 | exon | 15982351 | 15982440 | 15982351 | ID=MS.gene044460.t1.exon8;Parent=MS.gene044460.t1 |
| chr8.1 | CDS | 15982351 | 15982440 | 15982351 | ID=cds.MS.gene044460.t1;Parent=MS.gene044460.t1 |
| Gene Sequence |
| Protein sequence |
