Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045586.t1 | XP_013456667.1 | 96.1 | 568 | 22 | 0 | 343 | 910 | 11 | 578 | 0.00E+00 | 1121.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045586.t1 | Q500V2 | 75.4 | 545 | 134 | 0 | 366 | 910 | 15 | 559 | 5.3e-255 | 882.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045586.t1 | A0A072UNS6 | 96.1 | 568 | 22 | 0 | 343 | 910 | 11 | 578 | 0.0e+00 | 1121.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98045 | MS.gene045586 | PPI |
| MS.gene017247 | MS.gene045586 | PPI |
| MS.gene031698 | MS.gene045586 | PPI |
| MS.gene045586 | MS.gene05127 | PPI |
| MS.gene045586 | MS.gene009653 | PPI |
| MS.gene53889 | MS.gene045586 | PPI |
| MS.gene045586 | MS.gene049594 | PPI |
| MS.gene26246 | MS.gene045586 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045586.t1 | MTR_4g078525 | 98.415 | 568 | 9 | 0 | 343 | 910 | 11 | 578 | 0.0 | 1185 |
| MS.gene045586.t1 | MTR_6g033695 | 36.909 | 317 | 142 | 10 | 2 | 314 | 462 | 724 | 1.50e-40 | 160 |
| MS.gene045586.t1 | MTR_1148s0010 | 28.793 | 323 | 188 | 9 | 3 | 314 | 261 | 552 | 1.11e-26 | 116 |
| MS.gene045586.t1 | MTR_5g021380 | 31.677 | 322 | 161 | 15 | 3 | 306 | 232 | 512 | 3.72e-21 | 100 |
| MS.gene045586.t1 | MTR_7g033825 | 25.581 | 387 | 234 | 9 | 33 | 407 | 150 | 494 | 2.03e-18 | 90.9 |
| MS.gene045586.t1 | MTR_6g048830 | 40.000 | 105 | 55 | 2 | 2 | 101 | 160 | 261 | 8.87e-18 | 85.1 |
| MS.gene045586.t1 | MTR_6g024400 | 39.583 | 96 | 58 | 0 | 3 | 98 | 364 | 459 | 1.85e-17 | 87.8 |
| MS.gene045586.t1 | MTR_2g438380 | 50.877 | 57 | 28 | 0 | 3 | 59 | 27 | 83 | 1.99e-16 | 75.5 |
| MS.gene045586.t1 | MTR_1g061220 | 44.231 | 104 | 55 | 1 | 211 | 314 | 2297 | 2397 | 2.63e-16 | 84.7 |
| MS.gene045586.t1 | MTR_5g073130 | 39.000 | 100 | 58 | 1 | 3 | 102 | 274 | 370 | 4.85e-16 | 81.6 |
| MS.gene045586.t1 | MTR_8g103960 | 50.725 | 69 | 33 | 1 | 3 | 71 | 48 | 115 | 4.92e-16 | 76.3 |
| MS.gene045586.t1 | MTR_8g045280 | 45.192 | 104 | 48 | 2 | 214 | 314 | 644 | 741 | 9.02e-16 | 82.4 |
| MS.gene045586.t1 | MTR_6g054900 | 57.692 | 52 | 22 | 0 | 2 | 53 | 151 | 202 | 1.14e-15 | 78.6 |
| MS.gene045586.t1 | MTR_1g062580 | 42.697 | 89 | 46 | 2 | 9 | 93 | 442 | 529 | 1.38e-15 | 81.6 |
| MS.gene045586.t1 | MTR_0073s0040 | 38.889 | 90 | 55 | 0 | 3 | 92 | 180 | 269 | 3.00e-13 | 72.4 |
| MS.gene045586.t1 | MTR_3g022785 | 51.613 | 62 | 30 | 0 | 11 | 72 | 395 | 456 | 6.17e-13 | 72.8 |
| MS.gene045586.t1 | MTR_7g083690 | 40.659 | 91 | 50 | 2 | 3 | 89 | 298 | 388 | 6.22e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045586.t1 | AT2G20650 | 75.413 | 545 | 134 | 0 | 366 | 910 | 15 | 559 | 0.0 | 877 |
| MS.gene045586.t1 | AT2G20650 | 75.413 | 545 | 134 | 0 | 366 | 910 | 15 | 559 | 0.0 | 877 |
| MS.gene045586.t1 | AT4G28370 | 74.088 | 548 | 142 | 0 | 363 | 910 | 15 | 562 | 0.0 | 867 |
| MS.gene045586.t1 | AT4G28370 | 74.088 | 548 | 142 | 0 | 363 | 910 | 15 | 562 | 0.0 | 867 |
| MS.gene045586.t1 | AT4G28370 | 74.088 | 548 | 142 | 0 | 363 | 910 | 15 | 562 | 0.0 | 867 |
| MS.gene045586.t1 | AT4G28370 | 74.088 | 548 | 142 | 0 | 363 | 910 | 15 | 562 | 0.0 | 867 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATATTCCATTGTGAAAA+TGG | 0.178125 | 4.1:+27354692 | None:intergenic |
| TGCTTCTTGTATACTCCTTT+TGG | 0.190274 | 4.1:-27351099 | MS.gene045586:CDS |
| CAATGGCTCTTCTAAATTTC+CGG | 0.209819 | 4.1:-27354238 | MS.gene045586:CDS |
| AATGCAACATCTATTAATAT+TGG | 0.258636 | 4.1:-27352889 | MS.gene045586:CDS |
| TGAGATATCTCCTTGCAATT+TGG | 0.273458 | 4.1:-27351592 | MS.gene045586:CDS |
| ACCATTCGAAGTTGTCTAAA+AGG | 0.305278 | 4.1:+27353748 | None:intergenic |
| TTGCATCCTCATTATATATT+AGG | 0.305463 | 4.1:-27351031 | MS.gene045586:CDS |
| GAATAGGTCTCAAATAATTA+TGG | 0.317946 | 4.1:+27351122 | None:intergenic |
| CAATGCAAATGTAGAGACTA+TGG | 0.318891 | 4.1:-27361045 | MS.gene045586:CDS |
| TCGGAACAAATTATTGTTGA+TGG | 0.320495 | 4.1:-27361290 | MS.gene045586:CDS |
| CTGAGAAATACAGCTATTAT+AGG | 0.323696 | 4.1:-27350733 | MS.gene045586:CDS |
| GACAATGAGGCGTGAGCTTT+CGG | 0.325927 | 4.1:-27351531 | MS.gene045586:CDS |
| AGCATCAGCTTGCTGAGTTT+CGG | 0.332309 | 4.1:+27360968 | None:intergenic |
| TCAAAGGTTGGAACTTTGTT+TGG | 0.339281 | 4.1:-27355764 | MS.gene045586:CDS |
| AGATGCAATACCAGATGATA+TGG | 0.346387 | 4.1:+27353515 | None:intergenic |
| AAGGAGGAGGATCGGTCTTA+TGG | 0.351911 | 4.1:-27360690 | MS.gene045586:CDS |
| TCGTATGTCGTGAAGATTCT+TGG | 0.353632 | 4.1:+27353302 | None:intergenic |
| GAGGATTGTGTTTGGTTTGT+TGG | 0.357357 | 4.1:-27355713 | MS.gene045586:CDS |
| CCGTTGGTTCATTCCTCATC+AGG | 0.359239 | 4.1:-27350855 | MS.gene045586:intron |
| TGGAACTTTGTTTGGTTAAG+AGG | 0.359266 | 4.1:-27355756 | MS.gene045586:CDS |
| AAATAGAAGGTGTATATATA+TGG | 0.361668 | 4.1:-27353771 | MS.gene045586:CDS |
| TGCAAGTTCTTCTGTTGATT+CGG | 0.367604 | 4.1:-27352726 | MS.gene045586:CDS |
| CAGTTGCAAAAGCATTGAAC+AGG | 0.369339 | 4.1:+27351654 | None:intergenic |
| CGACTTCCCCACAACAGCTT+TGG | 0.370118 | 4.1:+27360746 | None:intergenic |
| GATTTCCACATCATCGTTAG+AGG | 0.372618 | 4.1:-27361324 | MS.gene045586:CDS |
| GTAAAGGAGAACGGTGGTAG+TGG | 0.374035 | 4.1:-27360576 | MS.gene045586:CDS |
| TCAGAGCTGGTGTGTTTGTT+TGG | 0.374517 | 4.1:-27350933 | MS.gene045586:CDS |
| TAGTTCAGATTCTGATTCTC+AGG | 0.376867 | 4.1:-27361189 | MS.gene045586:CDS |
| TCTTCTGTTGATTCGGCAAA+TGG | 0.378840 | 4.1:-27352719 | MS.gene045586:CDS |
| GGAGCGGGCGCCGACATGTT+GGG | 0.384635 | 4.1:+27350473 | None:intergenic |
| CAAGTCATCATCTATTTCTA+AGG | 0.387745 | 4.1:-27360709 | MS.gene045586:CDS |
| GAGGATCGGTCTTATGGTTC+AGG | 0.393642 | 4.1:-27360684 | MS.gene045586:CDS |
| TTAACATCATTTGCCGTAGC+TGG | 0.393852 | 4.1:-27360816 | MS.gene045586:CDS |
| TTTGGTGGAAATTAAAATAG+TGG | 0.395655 | 4.1:-27361264 | MS.gene045586:CDS |
| GGTAGCAAGGTTACCTAGTA+AGG | 0.396535 | 4.1:-27360478 | MS.gene045586:CDS |
| GGGAGCGGGCGCCGACATGT+TGG | 0.397562 | 4.1:+27350472 | None:intergenic |
| TCTATGCGCAAGAAGTTGTT+AGG | 0.397790 | 4.1:+27350962 | None:intergenic |
| TCTTGCAGATGGGATTCTGT+TGG | 0.398631 | 4.1:-27351170 | MS.gene045586:intron |
| GAGCCAGAGGTTTCTGTTTG+CGG | 0.410824 | 4.1:+27360879 | None:intergenic |
| GATGTTGCATTTAATTGTAA+TGG | 0.416088 | 4.1:+27352901 | None:intergenic |
| GAGTATACAAGAAGCAGAAT+AGG | 0.422097 | 4.1:+27351106 | None:intergenic |
| AAGGTTTCAATAATAATGAT+TGG | 0.422296 | 4.1:-27352500 | MS.gene045586:CDS |
| CTTGCAGATGGGATTCTGTT+GGG | 0.423931 | 4.1:-27351169 | MS.gene045586:intron |
| TTGACAACGAATACAATGTT+GGG | 0.426120 | 4.1:-27353807 | MS.gene045586:CDS |
| CTATTATAGGAGGTCTTCTC+AGG | 0.426465 | 4.1:-27350720 | MS.gene045586:CDS |
| AGGCGTGTAAGAAGAAGGTT+GGG | 0.430603 | 4.1:-27360536 | MS.gene045586:CDS |
| CAGGTCCATGGAGCGTTGAT+TGG | 0.432053 | 4.1:-27360665 | MS.gene045586:CDS |
| AGGAGCTGAAACAAAAGATA+TGG | 0.435278 | 4.1:-27360410 | MS.gene045586:CDS |
| ATGGAACCGTCGACGACAAA+GGG | 0.437850 | 4.1:-27360391 | MS.gene045586:CDS |
| TTGGTTACATAACATTCAAA+AGG | 0.437989 | 4.1:-27360646 | MS.gene045586:CDS |
| ACACTGGCTGTTTACAAAGA+TGG | 0.438085 | 4.1:-27350516 | MS.gene045586:CDS |
| AGTACACCCACAAAGATAAC+TGG | 0.442208 | 4.1:-27354174 | MS.gene045586:CDS |
| AAGGCGTGTAAGAAGAAGGT+TGG | 0.442972 | 4.1:-27360537 | MS.gene045586:CDS |
| TTTGAGTAACGGTGAAGGTT+GGG | 0.444850 | 4.1:-27351555 | MS.gene045586:CDS |
| CTCTGGCTCAAAGGATGCAT+TGG | 0.445555 | 4.1:-27360865 | MS.gene045586:CDS |
| TTGCATTGTCCATCCCATCT+TGG | 0.446911 | 4.1:+27361060 | None:intergenic |
| GAAGAGTGGGGATTTAATCT+TGG | 0.448888 | 4.1:-27361242 | MS.gene045586:CDS |
| TGTGTTCATTGAACAGAGAA+AGG | 0.452911 | 4.1:-27361367 | MS.gene045586:CDS |
| GGATAGGGAGGAGGTGATGA+AGG | 0.453709 | 4.1:-27360457 | MS.gene045586:CDS |
| TTTATCCAATCCATATCATC+TGG | 0.453904 | 4.1:-27353525 | MS.gene045586:intron |
| CTCTCCGCAGCTCCTTTGCA+TGG | 0.456334 | 4.1:-27353166 | MS.gene045586:intron |
| CAAACACACCAGCTCTGATC+TGG | 0.457199 | 4.1:+27350938 | None:intergenic |
| GGTCTTATGGTTCAGGTCCA+TGG | 0.459864 | 4.1:-27360677 | MS.gene045586:CDS |
| TAAAGGAGAACGGTGGTAGT+GGG | 0.461503 | 4.1:-27360575 | MS.gene045586:CDS |
| TGCCTTGTACATTTGACTGC+AGG | 0.461771 | 4.1:-27352449 | MS.gene045586:CDS |
| AAATAAAATTGTTGAGGTGC+TGG | 0.462072 | 4.1:-27361135 | MS.gene045586:CDS |
| GATTGGTCAGCAAGCTATAG+TGG | 0.462232 | 4.1:-27352483 | MS.gene045586:CDS |
| TGAGGGACAAAACTGGTTCA+TGG | 0.462311 | 4.1:-27355648 | MS.gene045586:CDS |
| GAGAACGGTGGTAGTGGGGA+AGG | 0.465106 | 4.1:-27360570 | MS.gene045586:CDS |
| AGCTTCAGCTTGCTGAGTTG+CGG | 0.471414 | 4.1:+27360905 | None:intergenic |
| AATTATTGTTGATGGAACTT+TGG | 0.472526 | 4.1:-27361282 | MS.gene045586:CDS |
| TGATCGCGGCGTGAGATCAA+TGG | 0.473644 | 4.1:+27350658 | None:intergenic |
| GGTGCCCAAATCAAAATAGA+AGG | 0.476304 | 4.1:-27353784 | MS.gene045586:CDS |
| AGCAGTGAACTATACCTTGA+TGG | 0.476566 | 4.1:-27352851 | MS.gene045586:CDS |
| GGCTGGTCTCAGACCATTGA+GGG | 0.476691 | 4.1:-27355665 | MS.gene045586:CDS |
| AGACCATTGAGGGACAAAAC+TGG | 0.478152 | 4.1:-27355655 | MS.gene045586:CDS |
| TATTGTTGATGGAACTTTGG+TGG | 0.479504 | 4.1:-27361279 | MS.gene045586:CDS |
| AGAACGGTGGTAGTGGGGAA+GGG | 0.481410 | 4.1:-27360569 | MS.gene045586:CDS |
| TTGTTTCTTAGTCCTGTGGC+TGG | 0.482694 | 4.1:-27355682 | MS.gene045586:CDS |
| CAAGGTTACCTAGTAAGGAT+AGG | 0.483637 | 4.1:-27360473 | MS.gene045586:CDS |
| CTATAATAGCTGTATTTCTC+AGG | 0.483761 | 4.1:+27350734 | None:intergenic |
| TCCAACGTCCAAAGCTGTTG+TGG | 0.484808 | 4.1:-27360754 | MS.gene045586:CDS |
| CTATTCATGCAGGTGGGAGC+GGG | 0.487009 | 4.1:+27350458 | None:intergenic |
| AAGGTTACCTAGTAAGGATA+GGG | 0.490295 | 4.1:-27360472 | MS.gene045586:CDS |
| AACATTCAAAAGGGAGACAT+AGG | 0.490634 | 4.1:-27360636 | MS.gene045586:CDS |
| TCTATTCATGCAGGTGGGAG+CGG | 0.493082 | 4.1:+27350457 | None:intergenic |
| CAATGCATCCTTTGAGCCAG+AGG | 0.496593 | 4.1:+27360866 | None:intergenic |
| CAATACCAGATGATATGGAT+TGG | 0.498457 | 4.1:+27353520 | None:intergenic |
| AGAAAAGGCGTGTAAGAAGA+AGG | 0.499616 | 4.1:-27360541 | MS.gene045586:CDS |
| CCAACGTCCAAAGCTGTTGT+GGG | 0.500718 | 4.1:-27360753 | MS.gene045586:CDS |
| CATGAAACAGCTTCAGTTGG+AGG | 0.500988 | 4.1:-27361008 | MS.gene045586:CDS |
| GAGGGAGGGTTGAATCAAGA+TGG | 0.501959 | 4.1:-27353557 | MS.gene045586:CDS |
| CTTTGAGTAACGGTGAAGGT+TGG | 0.502166 | 4.1:-27351556 | MS.gene045586:CDS |
| TGTACACCAGTTATCTTTGT+GGG | 0.502285 | 4.1:+27354168 | None:intergenic |
| TGCGGCCTTTCCTCCAGCTA+CGG | 0.503342 | 4.1:+27360803 | None:intergenic |
| TTGACTGCAGGAATACTAGT+TGG | 0.505317 | 4.1:-27352437 | MS.gene045586:intron |
| GAGGGACAAAACTGGTTCAT+GGG | 0.507415 | 4.1:-27355647 | MS.gene045586:CDS |
| GCTACGGCAAATGATGTTAA+CGG | 0.508318 | 4.1:+27360819 | None:intergenic |
| ACCTCCTCCCTATCCTTACT+AGG | 0.508774 | 4.1:+27360465 | None:intergenic |
| TTTCGAAAATCTATTCATGC+AGG | 0.509474 | 4.1:+27350448 | None:intergenic |
| ATGTACACCAGTTATCTTTG+TGG | 0.511877 | 4.1:+27354167 | None:intergenic |
| AACTGAATCAGCTGGTTCAA+AGG | 0.512057 | 4.1:-27360937 | MS.gene045586:CDS |
| TGGGGAAGGGAAGAGAGAAA+AGG | 0.513283 | 4.1:-27360556 | MS.gene045586:CDS |
| AACTTCGAATGGTAGCCAAC+AGG | 0.513880 | 4.1:-27353738 | MS.gene045586:intron |
| CAAGCAGTTCTGAAACGAAT+GGG | 0.514733 | 4.1:-27360782 | MS.gene045586:CDS |
| CTCCTTCTTCAGCATTACCT+CGG | 0.517795 | 4.1:-27350881 | MS.gene045586:CDS |
| CGGAAATTTAGAAGAGCCAT+TGG | 0.518059 | 4.1:+27354239 | None:intergenic |
| AGCATTACCTCGGCTCCCGT+TGG | 0.520090 | 4.1:-27350871 | MS.gene045586:CDS |
| AACAGAAACCTCTGGCTCAA+AGG | 0.523736 | 4.1:-27360874 | MS.gene045586:CDS |
| AAAGGAGAACGGTGGTAGTG+GGG | 0.524699 | 4.1:-27360574 | MS.gene045586:CDS |
| ACTTTGTTTGGTTAAGAGGA+AGG | 0.529791 | 4.1:-27355752 | MS.gene045586:CDS |
| AACTGGTTCATGGGGTGATG+AGG | 0.529845 | 4.1:-27355638 | MS.gene045586:intron |
| ATCATCTATTTCTAAGGAGG+AGG | 0.531213 | 4.1:-27360703 | MS.gene045586:CDS |
| CGAAAATCTATTCATGCAGG+TGG | 0.532542 | 4.1:+27350451 | None:intergenic |
| AATTACAAGGTCGTTAGAGT+TGG | 0.532786 | 4.1:-27360364 | MS.gene045586:intron |
| TATACGAGAACTTACAGAAA+CGG | 0.540778 | 4.1:+27351498 | None:intergenic |
| AATTAAAATAGTGGAAGAGT+GGG | 0.541466 | 4.1:-27361255 | MS.gene045586:CDS |
| AAGATGGATGGATATAAAGA+TGG | 0.541854 | 4.1:-27350500 | MS.gene045586:CDS |
| TGAAACAAATAAAATTGTTG+AGG | 0.541909 | 4.1:-27361141 | MS.gene045586:CDS |
| TGAGGTTGAAGCTCAAAGGT+TGG | 0.542993 | 4.1:-27355776 | MS.gene045586:intron |
| GGAAAAGATGAAAGCGACAT+AGG | 0.545326 | 4.1:-27354716 | MS.gene045586:CDS |
| TTTGACAACGAATACAATGT+TGG | 0.545761 | 4.1:-27353808 | MS.gene045586:CDS |
| GCGTGAATCGCGAATAACAT+TGG | 0.548513 | 4.1:+27351060 | None:intergenic |
| GACTTGCTTTCCAAATTGCA+AGG | 0.548835 | 4.1:+27351582 | None:intergenic |
| CCCACAACAGCTTTGGACGT+TGG | 0.550904 | 4.1:+27360753 | None:intergenic |
| AGCCGAGGTAATGCTGAAGA+AGG | 0.552624 | 4.1:+27350879 | None:intergenic |
| TGGTTACATAACATTCAAAA+GGG | 0.555519 | 4.1:-27360645 | MS.gene045586:CDS |
| ACCTTCTTCAAAGTGAGCAC+CGG | 0.556291 | 4.1:+27360498 | None:intergenic |
| TGGCTGGTCTCAGACCATTG+AGG | 0.556316 | 4.1:-27355666 | MS.gene045586:CDS |
| TATGGAACCGTCGACGACAA+AGG | 0.556661 | 4.1:-27360392 | MS.gene045586:CDS |
| GAGTCACAAACTGAATCAGC+TGG | 0.558209 | 4.1:-27360945 | MS.gene045586:CDS |
| TCCGGTGCTCACTTTGAAGA+AGG | 0.558769 | 4.1:-27360499 | MS.gene045586:CDS |
| GCACCGCAAACAGAAACCTC+TGG | 0.561331 | 4.1:-27360882 | MS.gene045586:CDS |
| GGATGCATTGGTTCACGACA+TGG | 0.563520 | 4.1:-27360853 | MS.gene045586:CDS |
| CGCTTGTCATCGTCAAAACA+TGG | 0.564678 | 4.1:-27353100 | MS.gene045586:intron |
| GTTATGCCTAATATATAATG+AGG | 0.565752 | 4.1:+27351025 | None:intergenic |
| ACCTAGTAAGGATAGGGAGG+AGG | 0.569848 | 4.1:-27360466 | MS.gene045586:CDS |
| TCTGTTGTTTCTTAGTCCTG+TGG | 0.569867 | 4.1:-27355686 | MS.gene045586:CDS |
| AAATTAAAATAGTGGAAGAG+TGG | 0.569972 | 4.1:-27361256 | MS.gene045586:CDS |
| TAACGTTGAAATTTCAGCAC+GGG | 0.570846 | 4.1:-27353128 | MS.gene045586:CDS |
| GTTACCTAGTAAGGATAGGG+AGG | 0.570988 | 4.1:-27360469 | MS.gene045586:CDS |
| TACATTGTGCTGACCAAGAT+GGG | 0.571027 | 4.1:-27361073 | MS.gene045586:CDS |
| TGGTTGAGGTTGAAGCTCAA+AGG | 0.571090 | 4.1:-27355780 | MS.gene045586:intron |
| AATATATAATGAGGATGCAA+TGG | 0.571419 | 4.1:+27351034 | None:intergenic |
| TGTAACCAATCAACGCTCCA+TGG | 0.571914 | 4.1:+27360660 | None:intergenic |
| TGATGTGGAAATCAAAACTC+TGG | 0.575663 | 4.1:+27361334 | None:intergenic |
| GTACATGAAACAGCTTCAGT+TGG | 0.578138 | 4.1:-27361011 | MS.gene045586:CDS |
| GCAAGTCGGCCTTTGAGTAA+CGG | 0.579479 | 4.1:-27351566 | MS.gene045586:CDS |
| AGAAATACAGCTATTATAGG+AGG | 0.580639 | 4.1:-27350730 | MS.gene045586:CDS |
| GCAAGCAGTTCTGAAACGAA+TGG | 0.582294 | 4.1:-27360783 | MS.gene045586:CDS |
| AGTTCAGATTCTGATTCTCA+GGG | 0.582641 | 4.1:-27361188 | MS.gene045586:CDS |
| GGATACAAAGGTAACCATCA+AGG | 0.583380 | 4.1:+27352837 | None:intergenic |
| TGGCTGTTTACAAAGATGGA+TGG | 0.588478 | 4.1:-27350512 | MS.gene045586:CDS |
| CTGATGAGGAATGAACCAAC+GGG | 0.590196 | 4.1:+27350856 | None:intergenic |
| GCCGCGATCAAATGATTGCA+TGG | 0.591420 | 4.1:-27350645 | MS.gene045586:intron |
| CAACCTTCACCGTTACTCAA+AGG | 0.592696 | 4.1:+27351557 | None:intergenic |
| ACATCATTTGCCGTAGCTGG+AGG | 0.594166 | 4.1:-27360813 | MS.gene045586:CDS |
| AATGGTCTGAGACCAGCCAC+AGG | 0.595988 | 4.1:+27355670 | None:intergenic |
| AAATGTAGAGACTATGGGAA+TGG | 0.596079 | 4.1:-27361039 | MS.gene045586:CDS |
| GCATAGAACCAGATCAGAGC+TGG | 0.597398 | 4.1:-27350946 | MS.gene045586:CDS |
| GTCATCATCTATTTCTAAGG+AGG | 0.597685 | 4.1:-27360706 | MS.gene045586:CDS |
| GATTATCTGAGGTATCCAAA+AGG | 0.599124 | 4.1:+27351084 | None:intergenic |
| AATGGTTGAATGCAGGGACG+TGG | 0.600426 | 4.1:-27354278 | MS.gene045586:intron |
| ATTTGCCGTAGCTGGAGGAA+AGG | 0.601330 | 4.1:-27360808 | MS.gene045586:CDS |
| AATGCAAATGTAGAGACTAT+GGG | 0.602687 | 4.1:-27361044 | MS.gene045586:CDS |
| GAATGAACCAACGGGAGCCG+AGG | 0.603539 | 4.1:+27350864 | None:intergenic |
| TATTAGGCATAACCGTTACT+CGG | 0.603564 | 4.1:-27351015 | MS.gene045586:CDS |
| AACGACCTCTAACGATGATG+TGG | 0.603647 | 4.1:+27361319 | None:intergenic |
| TTGCAATTTGGAAAGCAAGT+CGG | 0.605030 | 4.1:-27351580 | MS.gene045586:CDS |
| TGGGGAAGTCGAGGAAGCGT+AGG | 0.606464 | 4.1:-27360734 | MS.gene045586:CDS |
| AATGTAGAGACTATGGGAAT+GGG | 0.606614 | 4.1:-27361038 | MS.gene045586:CDS |
| CGGCCTTTGAGTAACGGTGA+AGG | 0.608981 | 4.1:-27351560 | MS.gene045586:CDS |
| GAGTTAGGCCCAACCTGATG+AGG | 0.609089 | 4.1:+27350842 | None:intergenic |
| GTGAAGGTTGGGAGACAATG+AGG | 0.611990 | 4.1:-27351544 | MS.gene045586:CDS |
| CTATTTCTAAGGAGGAGGAT+CGG | 0.612221 | 4.1:-27360698 | MS.gene045586:CDS |
| AAGCTGTTGTGGGGAAGTCG+AGG | 0.614446 | 4.1:-27360743 | MS.gene045586:CDS |
| ACATTCAAAAGGGAGACATA+GGG | 0.614485 | 4.1:-27360635 | MS.gene045586:CDS |
| TTCCTGCAGTCAAATGTACA+AGG | 0.615833 | 4.1:+27352447 | None:intergenic |
| AGTCCGTCTGTGGATGACGA+TGG | 0.615922 | 4.1:-27352937 | MS.gene045586:CDS |
| AACTGGTGTACATTATGTGC+AGG | 0.617157 | 4.1:-27354157 | MS.gene045586:intron |
| TTGTGCTGACCAAGATGGGA+TGG | 0.619153 | 4.1:-27361069 | MS.gene045586:CDS |
| GCGTGATTCTAAAATCATGA+AGG | 0.620845 | 4.1:-27360430 | MS.gene045586:CDS |
| ATTCGTTTCAGAACTGCTTG+CGG | 0.620959 | 4.1:+27360785 | None:intergenic |
| TGGGATTGCTAGCCGAGTAA+CGG | 0.622366 | 4.1:+27351003 | None:intergenic |
| TAAAATTGTTGAGGTGCTGG+CGG | 0.624644 | 4.1:-27361132 | MS.gene045586:CDS |
| TTTGCAGCGGAAAAGAGGGA+GGG | 0.626633 | 4.1:-27353571 | MS.gene045586:intron |
| ATAACATTGGTGATTATCTG+AGG | 0.627178 | 4.1:+27351073 | None:intergenic |
| CCTGATGAGGAATGAACCAA+CGG | 0.627200 | 4.1:+27350855 | None:intergenic |
| TCACTTTGAAGAAGGTAGCA+AGG | 0.635475 | 4.1:-27360491 | MS.gene045586:CDS |
| GAAAATCTATTCATGCAGGT+GGG | 0.635768 | 4.1:+27350452 | None:intergenic |
| ATCTTTGTAAACAGCCAGTG+TGG | 0.635865 | 4.1:+27350518 | None:intergenic |
| GCAGATGGGATTCTGTTGGG+TGG | 0.639687 | 4.1:-27351166 | MS.gene045586:intron |
| CATGCAAATAACACAGTCCG+TGG | 0.639959 | 4.1:+27350685 | None:intergenic |
| GGCGTGTAAGAAGAAGGTTG+GGG | 0.643066 | 4.1:-27360535 | MS.gene045586:CDS |
| AGATGGAGTGCCCAACATGT+CGG | 0.646036 | 4.1:-27350483 | MS.gene045586:CDS |
| TCAGGATACAAATCATGCCA+CGG | 0.646858 | 4.1:-27350702 | MS.gene045586:CDS |
| AGGGACAAAACTGGTTCATG+GGG | 0.650178 | 4.1:-27355646 | MS.gene045586:CDS |
| ATTGATGGAAAGTCCGTCTG+TGG | 0.650880 | 4.1:-27352947 | MS.gene045586:CDS |
| TGACAACGAATACAATGTTG+GGG | 0.655141 | 4.1:-27353806 | MS.gene045586:CDS |
| ATACATTGTGCTGACCAAGA+TGG | 0.658163 | 4.1:-27361074 | MS.gene045586:CDS |
| TCTCCATCGTCATCCACAGA+CGG | 0.662192 | 4.1:+27352934 | None:intergenic |
| AACTACAAACTTGAAGAATG+CGG | 0.663491 | 4.1:+27351631 | None:intergenic |
| CAACGTCCAAAGCTGTTGTG+GGG | 0.666593 | 4.1:-27360752 | MS.gene045586:CDS |
| AATATAACTGGAACTTACAG+AGG | 0.666924 | 4.1:-27354677 | MS.gene045586:intron |
| TGATGTGTGTTTGTACGATG+AGG | 0.667141 | 4.1:-27361216 | MS.gene045586:CDS |
| ATTCGTTGTCAAACACATCG+TGG | 0.667953 | 4.1:+27353818 | None:intergenic |
| GACAAAGGGAGAAAATTACA+AGG | 0.676782 | 4.1:-27360377 | MS.gene045586:CDS |
| AATCTTCACGACATACGATG+TGG | 0.677959 | 4.1:-27353297 | MS.gene045586:CDS |
| ATTAAAATAGTGGAAGAGTG+GGG | 0.678421 | 4.1:-27361254 | MS.gene045586:CDS |
| AGTTGCAAAAGCATTGAACA+GGG | 0.679201 | 4.1:+27351655 | None:intergenic |
| GTAACGTTGAAATTTCAGCA+CGG | 0.682539 | 4.1:-27353129 | MS.gene045586:CDS |
| GCGTGTAAGAAGAAGGTTGG+GGG | 0.689041 | 4.1:-27360534 | MS.gene045586:CDS |
| GACAACGAATACAATGTTGG+GGG | 0.699520 | 4.1:-27353805 | MS.gene045586:CDS |
| ACCATGCAATCATTTGATCG+CGG | 0.704135 | 4.1:+27350644 | None:intergenic |
| GTTAGAGGTCGTTAATACGT+CGG | 0.707872 | 4.1:-27361309 | MS.gene045586:CDS |
| GTTCAGATTCTGATTCTCAG+GGG | 0.719312 | 4.1:-27361187 | MS.gene045586:CDS |
| ATGCTGAAGAAGGAGAATTG+CGG | 0.740659 | 4.1:+27350889 | None:intergenic |
| AAAGTGGTAAAGGAGAACGG+TGG | 0.742980 | 4.1:-27360582 | MS.gene045586:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27350462 | 27361390 | 27350462 | ID=MS.gene045586 |
| chr4.1 | mRNA | 27350462 | 27361390 | 27350462 | ID=MS.gene045586.t1;Parent=MS.gene045586 |
| chr4.1 | exon | 27360365 | 27361390 | 27360365 | ID=MS.gene045586.t1.exon1;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27360365 | 27361390 | 27360365 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27355639 | 27355794 | 27355639 | ID=MS.gene045586.t1.exon2;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27355639 | 27355794 | 27355639 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27354678 | 27354750 | 27354678 | ID=MS.gene045586.t1.exon3;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27354678 | 27354750 | 27354678 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27354158 | 27354285 | 27354158 | ID=MS.gene045586.t1.exon4;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27354158 | 27354285 | 27354158 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27353739 | 27353854 | 27353739 | ID=MS.gene045586.t1.exon5;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27353739 | 27353854 | 27353739 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27353526 | 27353586 | 27353526 | ID=MS.gene045586.t1.exon6;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27353526 | 27353586 | 27353526 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27353284 | 27353350 | 27353284 | ID=MS.gene045586.t1.exon7;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27353284 | 27353350 | 27353284 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27353101 | 27353178 | 27353101 | ID=MS.gene045586.t1.exon8;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27353101 | 27353178 | 27353101 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27352843 | 27353000 | 27352843 | ID=MS.gene045586.t1.exon9;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27352843 | 27353000 | 27352843 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27352699 | 27352758 | 27352699 | ID=MS.gene045586.t1.exon10;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27352699 | 27352758 | 27352699 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27352438 | 27352531 | 27352438 | ID=MS.gene045586.t1.exon11;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27352438 | 27352531 | 27352438 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27351513 | 27351680 | 27351513 | ID=MS.gene045586.t1.exon12;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27351513 | 27351680 | 27351513 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27350856 | 27351184 | 27350856 | ID=MS.gene045586.t1.exon13;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27350856 | 27351184 | 27350856 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27350646 | 27350762 | 27350646 | ID=MS.gene045586.t1.exon14;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27350646 | 27350762 | 27350646 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| chr4.1 | exon | 27350462 | 27350563 | 27350462 | ID=MS.gene045586.t1.exon15;Parent=MS.gene045586.t1 |
| chr4.1 | CDS | 27350462 | 27350563 | 27350462 | ID=cds.MS.gene045586.t1;Parent=MS.gene045586.t1 |
| Gene Sequence |
| Protein sequence |
