AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046098

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046098.t1 MTR_8g464350 93.701 254 16 0 1 254 1 254 0.0 509
MS.gene046098.t1 MTR_8g058990 81.102 254 47 1 1 254 1 253 3.05e-156 434
MS.gene046098.t1 MTR_7g013140 72.835 254 66 2 1 254 1 251 1.49e-136 384
MS.gene046098.t1 MTR_7g013120 72.157 255 68 3 1 254 1 253 3.70e-134 379
MS.gene046098.t1 MTR_7g013150 69.291 254 77 1 1 254 1 253 4.75e-133 375
MS.gene046098.t1 MTR_7g061720 57.895 247 98 3 7 248 6 251 4.90e-99 290
MS.gene046098.t1 MTR_5g079950 57.261 241 98 2 13 248 12 252 7.87e-98 286
MS.gene046098.t1 MTR_2g097030 60.455 220 85 1 31 248 34 253 1.04e-96 284
MS.gene046098.t1 MTR_3g435430 59.641 223 86 2 28 248 22 242 9.69e-94 276
MS.gene046098.t1 MTR_4g063975 56.680 247 102 2 7 248 5 251 1.72e-93 276
MS.gene046098.t1 MTR_3g094040 53.226 248 108 3 7 248 3 248 2.07e-92 273
MS.gene046098.t1 MTR_3g094060 58.636 220 87 2 31 248 31 248 3.53e-92 272
MS.gene046098.t1 MTR_5g041700 54.918 244 106 2 10 251 4 245 6.22e-92 271
MS.gene046098.t1 MTR_5g075320 53.785 251 109 4 4 251 3 249 6.57e-92 271
MS.gene046098.t1 MTR_4g081950 57.399 223 91 2 31 251 61 281 2.29e-89 266
MS.gene046098.t1 MTR_3g466760 53.846 247 109 3 8 251 14 258 3.21e-87 259
MS.gene046098.t1 MTR_1g026020 55.217 230 98 3 29 254 27 255 3.86e-87 259
MS.gene046098.t1 MTR_7g011060 57.727 220 85 2 29 248 24 235 5.23e-87 258
MS.gene046098.t1 MTR_5g011210 50.391 256 122 4 3 254 8 262 1.04e-86 258
MS.gene046098.t1 MTR_3g466790 53.441 247 110 3 8 251 8 252 4.55e-86 256
MS.gene046098.t1 MTR_0008s0120 54.510 255 59 6 1 254 1 199 1.45e-83 248
MS.gene046098.t1 MTR_4g124340 52.489 221 100 3 31 248 61 279 1.07e-82 249
MS.gene046098.t1 MTR_1g085460 51.230 244 110 5 16 254 18 257 3.59e-82 247
MS.gene046098.t1 MTR_7g111010 49.593 246 117 5 15 254 10 254 1.67e-81 245
MS.gene046098.t1 MTR_4g102450 52.838 229 104 3 29 254 34 261 1.68e-81 245
MS.gene046098.t1 MTR_7g110990 52.402 229 103 4 31 254 12 239 2.83e-81 244
MS.gene046098.t1 MTR_5g076950 52.018 223 104 2 29 249 39 260 7.46e-78 236
MS.gene046098.t1 MTR_0040s0140 46.964 247 126 2 8 249 6 252 1.07e-77 235
MS.gene046098.t1 MTR_6g012520 53.689 244 101 4 5 248 6 237 2.23e-77 234
MS.gene046098.t1 MTR_2g090255 44.898 245 133 1 7 249 4 248 1.11e-74 228
MS.gene046098.t1 MTR_3g064510 47.639 233 107 6 29 249 51 280 1.67e-70 218
MS.gene046098.t1 MTR_2g090270 31.154 260 155 8 7 254 11 258 6.08e-29 110
MS.gene046098.t1 MTR_2g090265 30.769 260 154 9 7 254 11 256 8.23e-27 104
MS.gene046098.t1 MTR_0122s0020 30.894 246 144 7 22 254 32 264 6.73e-25 99.8
MS.gene046098.t1 MTR_6g012500 48.421 95 49 0 154 248 181 275 7.37e-24 97.4
MS.gene046098.t1 MTR_4g028640 30.189 265 147 13 5 254 23 264 1.35e-22 93.6
MS.gene046098.t1 MTR_0809s0010 28.452 239 141 9 31 254 47 270 2.72e-20 87.8
MS.gene046098.t1 MTR_0118s0070 28.085 235 141 9 36 254 53 275 4.11e-19 84.3
MS.gene046098.t1 MTR_4g075790 29.098 244 142 8 21 250 13 239 1.13e-17 80.1
MS.gene046098.t1 MTR_0122s0020 31.694 183 100 6 22 192 32 201 2.74e-17 78.2
MS.gene046098.t1 MTR_4g099370 28.000 225 147 9 33 250 30 246 5.67e-17 78.2
MS.gene046098.t1 MTR_5g013440 26.638 229 151 10 34 254 32 251 4.10e-16 75.9
MS.gene046098.t1 MTR_4g098930 26.538 260 159 11 7 250 5 248 6.22e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046098.t1 AT5G39280 62.869 237 86 1 18 254 41 275 9.40e-114 328
MS.gene046098.t1 AT5G39300 64.348 230 80 1 25 254 49 276 2.20e-112 324
MS.gene046098.t1 AT5G39270 64.035 228 80 1 27 254 54 279 2.27e-107 311
MS.gene046098.t1 AT5G39290 63.158 228 82 1 27 254 54 279 3.46e-106 308
MS.gene046098.t1 AT5G02260 61.504 226 84 2 31 254 32 256 1.71e-101 296
MS.gene046098.t1 AT2G39700 58.537 246 97 2 8 248 5 250 2.45e-101 295
MS.gene046098.t1 AT5G39310 60.793 227 86 2 29 254 88 312 5.85e-100 294
MS.gene046098.t1 AT3G55500 58.197 244 99 2 7 248 11 253 6.89e-100 292
MS.gene046098.t1 AT2G37640 61.504 226 84 2 31 254 36 260 2.45e-99 291
MS.gene046098.t1 AT5G56320 58.744 223 88 2 28 248 26 246 2.90e-94 278
MS.gene046098.t1 AT5G56320 58.744 223 88 2 28 248 26 246 2.90e-94 278
MS.gene046098.t1 AT5G56320 58.744 223 88 2 28 248 26 246 1.93e-93 277
MS.gene046098.t1 AT2G28950 56.723 238 100 2 14 248 13 250 1.43e-92 273
MS.gene046098.t1 AT2G40610 55.144 243 101 4 10 249 12 249 9.26e-92 271
MS.gene046098.t1 AT2G37640 61.321 212 79 2 45 254 25 235 1.07e-91 270
MS.gene046098.t1 AT1G69530 53.226 248 112 2 7 252 3 248 1.47e-91 271
MS.gene046098.t1 AT1G69530 53.036 247 112 2 7 251 3 247 2.05e-91 270
MS.gene046098.t1 AT1G69530 53.036 247 112 2 7 251 3 247 2.05e-91 270
MS.gene046098.t1 AT5G05290 58.559 222 87 3 31 249 32 251 1.99e-90 268
MS.gene046098.t1 AT3G29030 60.092 218 80 2 31 248 38 248 2.89e-90 267
MS.gene046098.t1 AT2G03090 54.098 244 106 3 7 248 8 247 2.50e-89 265
MS.gene046098.t1 AT5G39260 53.782 238 102 3 18 254 32 262 5.43e-86 257
MS.gene046098.t1 AT1G12560 50.199 251 115 5 12 254 13 261 2.79e-85 255
MS.gene046098.t1 AT1G62980 49.206 252 121 4 6 254 9 256 4.07e-83 249
MS.gene046098.t1 AT4G01630 48.649 259 124 5 1 254 1 255 7.73e-82 246
MS.gene046098.t1 AT1G26770 52.917 240 107 3 13 248 6 243 1.89e-81 245
MS.gene046098.t1 AT1G26770 52.917 240 107 3 13 248 16 253 2.85e-81 244
MS.gene046098.t1 AT1G20190 51.327 226 105 3 33 254 28 252 1.74e-79 240
MS.gene046098.t1 AT1G69530 54.589 207 90 2 7 211 3 207 8.96e-79 238
MS.gene046098.t1 AT1G69530 54.589 207 90 2 7 211 3 207 1.12e-78 237
MS.gene046098.t1 AT3G03220 51.351 222 105 2 30 249 39 259 9.40e-78 236
MS.gene046098.t1 AT4G38210 43.802 242 128 3 12 249 13 250 1.90e-70 217
MS.gene046098.t1 AT1G20190 50.777 193 90 3 66 254 2 193 3.22e-65 201
MS.gene046098.t1 AT3G15370 43.210 243 130 5 12 250 8 246 6.93e-64 200
MS.gene046098.t1 AT3G15370 39.483 271 126 7 14 250 10 276 3.98e-57 184
MS.gene046098.t1 AT1G65680 32.645 242 136 10 28 254 44 273 1.05e-25 102
MS.gene046098.t1 AT2G20750 31.381 239 142 9 29 254 38 267 1.15e-23 96.7
MS.gene046098.t1 AT4G28250 31.557 244 142 9 24 254 29 260 1.89e-23 95.9
MS.gene046098.t1 AT1G65681 30.493 223 132 7 44 254 11 222 3.08e-22 92.0
MS.gene046098.t1 AT4G28250 31.120 241 141 8 24 254 29 254 9.53e-22 91.3
MS.gene046098.t1 AT2G45110 28.077 260 161 8 10 254 11 259 4.59e-21 89.4
MS.gene046098.t1 AT3G60570 27.239 268 165 8 4 254 3 257 2.74e-19 84.7
MS.gene046098.t1 AT3G45970 26.577 222 131 7 50 254 15 221 2.54e-15 73.6
MS.gene046098.t1 AT2G20750 30.286 175 102 7 29 192 38 203 4.35e-15 72.4
MS.gene046098.t1 AT4G28250 33.333 138 72 5 24 153 29 154 1.37e-14 70.9
MS.gene046098.t1 AT4G28250 33.333 138 72 5 24 153 29 154 1.70e-14 70.9
MS.gene046098.t1 AT3G60570 26.606 218 134 7 50 254 5 209 2.08e-14 70.5
MS.gene046098.t1 AT4G17030 27.547 265 159 12 1 251 1 246 4.56e-14 70.1
MS.gene046098.t1 AT3G45970 25.688 218 130 7 54 254 46 248 1.26e-12 66.2
MS.gene046098.t1 AT4G38400 25.806 217 130 8 54 254 47 248 4.56e-12 64.7

Find 60 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTCCACTGCTACATAAT+TGG 0.183743 8.4:+45553860 MS.gene046098:CDS
GCTCCTTCCAATTGGCAATT+TGG 0.209639 8.4:+45553979 MS.gene046098:CDS
TAGGACAAGATTTGTCATTT+TGG 0.214033 8.4:+45553914 MS.gene046098:CDS
AATCTATTCCAACAAGGATA+TGG 0.222879 8.4:+45553433 MS.gene046098:CDS
CCATCAGGTTTGTCGTAATT+TGG 0.225959 8.4:-45553601 None:intergenic
GTCTTACTGTTTGCTTCCTT+TGG 0.256256 8.4:+45552306 MS.gene046098:CDS
ACGACAAACCTGATGGAAAT+TGG 0.280254 8.4:+45553608 MS.gene046098:CDS
TTGGCATACGGGAGTTAATT+TGG 0.289467 8.4:+45553891 MS.gene046098:CDS
GACTCCACTGCTACATAATT+GGG 0.326536 8.4:+45553861 MS.gene046098:CDS
GCAATCCCATTGACTCAAAA+TGG 0.326805 8.4:+45552368 MS.gene046098:CDS
TACATAATTGGGGACAAGTT+TGG 0.337815 8.4:+45553872 MS.gene046098:CDS
TTTCTAGCCCATATCCTTGT+TGG 0.337949 8.4:-45553441 None:intergenic
CTTCCGTTGCTCCTTCCAAT+TGG 0.390243 8.4:+45553971 MS.gene046098:CDS
ACCGGACATGTCACCGTAGA+AGG 0.393823 8.4:-45552407 None:intergenic
GGAACACGTCGATATTGAAC+TGG 0.396453 8.4:-45553709 None:intergenic
GATGCCCATGCAACCTTCTA+CGG 0.443217 8.4:+45552394 MS.gene046098:CDS
GACGATCCCTGCTTTGTAAA+CGG 0.444086 8.4:-45553686 None:intergenic
TCAATCAAAGGGTCTAATAC+TGG 0.448813 8.4:+45553835 MS.gene046098:CDS
ATCTATTCCAACAAGGATAT+GGG 0.457023 8.4:+45553434 MS.gene046098:CDS
GGGTTACACCAATTTCCATC+AGG 0.476439 8.4:-45553616 None:intergenic
CATCTTTGATGCACCATTGT+GGG 0.476735 8.4:-45553540 None:intergenic
ACCTTCTACGGTGACATGTC+CGG 0.479848 8.4:+45552406 MS.gene046098:CDS
GCTCTTCTTGCATGAGGCCA+TGG 0.486934 8.4:+45552342 MS.gene046098:CDS
ACAATTGCCGTTTACAAAGC+AGG 0.492721 8.4:+45553679 MS.gene046098:CDS
TGGGGACAAGTTTGGCATAC+GGG 0.495911 8.4:+45553880 MS.gene046098:CDS
TACAGTGCTCTTCTTGCATG+AGG 0.499262 8.4:+45552336 MS.gene046098:CDS
CCAAATTACGACAAACCTGA+TGG 0.508657 8.4:+45553601 MS.gene046098:CDS
CATACGGGAGTTAATTTGGT+AGG 0.509770 8.4:+45553895 MS.gene046098:CDS
CTTACGCATTGTTTCACCAC+CGG 0.520789 8.4:-45552425 None:intergenic
GGTTTGTCCAAATTGCCAAT+TGG 0.522971 8.4:-45553986 None:intergenic
GGAAGCAAACAGTAAGACTT+AGG 0.524182 8.4:-45552301 None:intergenic
ATTCTGCGTGTGTCAATCAA+AGG 0.530316 8.4:+45553823 MS.gene046098:CDS
TCAGGTTTGTCGTAATTTGG+TGG 0.534988 8.4:-45553598 None:intergenic
TCAAAGGGTCTAATACTGGT+TGG 0.541495 8.4:+45553839 MS.gene046098:CDS
TTGGGGACAAGTTTGGCATA+CGG 0.541700 8.4:+45553879 MS.gene046098:CDS
TGTCCAAATTGCCAATTGGA+AGG 0.550082 8.4:-45553982 None:intergenic
CGTGTTCCATGCATCAAAAG+TGG 0.563181 8.4:+45553724 MS.gene046098:CDS
GGTGTTAGATTTGAACTAAG+AGG 0.564416 8.4:+45553748 MS.gene046098:CDS
TTCTGCGTGTGTCAATCAAA+GGG 0.565043 8.4:+45553824 MS.gene046098:CDS
GTCAATGGGATTGCGAGCCA+TGG 0.568122 8.4:-45552359 None:intergenic
GTGTATAATGTTGCCAACGC+TGG 0.571182 8.4:+45553796 MS.gene046098:CDS
ACATCTTTGATGCACCATTG+TGG 0.577686 8.4:-45553541 None:intergenic
CAATTGCCGTTTACAAAGCA+GGG 0.578468 8.4:+45553680 MS.gene046098:CDS
TTGCCAATTGGAAGGAGCAA+CGG 0.586445 8.4:-45553974 None:intergenic
ATGCACCACATCTGTAGCCA+TGG 0.588509 8.4:-45553492 None:intergenic
AAAATTGGCGGAGCTTTCGT+AGG 0.592097 8.4:-45554007 None:intergenic
ACGCAGAATGTCACCAGCGT+TGG 0.594027 8.4:-45553809 None:intergenic
TTCAACCATGGCTACAGATG+TGG 0.594972 8.4:+45553487 MS.gene046098:CDS
TGTCACCGTAGAAGGTTGCA+TGG 0.601270 8.4:-45552399 None:intergenic
GTCACCGTAGAAGGTTGCAT+GGG 0.616077 8.4:-45552398 None:intergenic
TAATGCCGTGCTTAATGCTG+TGG 0.619957 8.4:-45553464 None:intergenic
AGCACGGCATTATTCAACCA+TGG 0.632528 8.4:+45553475 MS.gene046098:CDS
TGTCCCCAATTATGTAGCAG+TGG 0.649411 8.4:-45553865 None:intergenic
ACTCCACTGCTACATAATTG+GGG 0.650498 8.4:+45553862 MS.gene046098:CDS
GAACACGTCGATATTGAACT+GGG 0.652049 8.4:-45553708 None:intergenic
AGAAACCACAGCATTAAGCA+CGG 0.676521 8.4:+45553459 MS.gene046098:CDS
GTTCCATGCATCAAAAGTGG+CGG 0.678655 8.4:+45553727 MS.gene046098:CDS
TTCTACGGTGACATGTCCGG+TGG 0.686557 8.4:+45552409 MS.gene046098:CDS
TATGGCAATCTATTCCAACA+AGG 0.717945 8.4:+45553427 MS.gene046098:CDS
AGTGTGTCAATGACCCACAA+TGG 0.747163 8.4:+45553527 MS.gene046098:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATACAAAAAACTAATAA+TGG - chr8.4:45553374-45553393 None:intergenic 10.0%
!!! ATAACAAATAAATGTTTTTT+AGG - chr8.4:45553334-45553353 None:intergenic 10.0%
!! ACAACGTATTATTAAATTAA+AGG - chr8.4:45553030-45553049 None:intergenic 15.0%
!! CAAATGAAAAAAGTTATAAA+TGG - chr8.4:45553200-45553219 None:intergenic 15.0%
!! CAACGTATTATTAAATTAAA+GGG - chr8.4:45553029-45553048 None:intergenic 15.0%
!! TTATAATACATAGATCAAAT+TGG + chr8.4:45552626-45552645 MS.gene046098:intron 15.0%
!!! ATTATATACTAGTATTTCTA+AGG - chr8.4:45552825-45552844 None:intergenic 15.0%
!!! GGTATTCTAAAAAAAATTAA+GGG - chr8.4:45552940-45552959 None:intergenic 15.0%
!!! GTATTCTAAAAAAAATTAAG+GGG - chr8.4:45552939-45552958 None:intergenic 15.0%
!!! TATTCTAAAAAAAATTAAGG+GGG - chr8.4:45552938-45552957 None:intergenic 15.0%
!!! TATTTAATTTTGGGTTAATA+GGG + chr8.4:45552851-45552870 MS.gene046098:intron 15.0%
!!! TTATTTAATTTTGGGTTAAT+AGG + chr8.4:45552850-45552869 MS.gene046098:intron 15.0%
!!! TTTTTTGAATGAACTATTAA+GGG - chr8.4:45552962-45552981 None:intergenic 15.0%
!! AATAGTTCATTCAAAAAACA+GGG + chr8.4:45552964-45552983 MS.gene046098:intron 20.0%
!! TAAAAAGAAAAATTAGACCA+TGG - chr8.4:45552583-45552602 None:intergenic 20.0%
!! TAATAGTTCATTCAAAAAAC+AGG + chr8.4:45552963-45552982 MS.gene046098:intron 20.0%
!! TAGGAATCAACATTTAATAT+GGG - chr8.4:45553315-45553334 None:intergenic 20.0%
!! TTAGGAATCAACATTTAATA+TGG - chr8.4:45553316-45553335 None:intergenic 20.0%
!!! CAAATGGAAAAAGTTTTAAA+TGG + chr8.4:45553226-45553245 MS.gene046098:intron 20.0%
!!! GGGTATTCTAAAAAAAATTA+AGG - chr8.4:45552941-45552960 None:intergenic 20.0%
!!! GTTTTTTGAATGAACTATTA+AGG - chr8.4:45552963-45552982 None:intergenic 20.0%
!!! TTTTTGAATGAACTATTAAG+GGG - chr8.4:45552961-45552980 None:intergenic 20.0%
! ACCAAAACCATCAAAAAATA+AGG - chr8.4:45553778-45553797 None:intergenic 25.0%
! CCAAAACCATCAAAAAATAA+GGG - chr8.4:45553777-45553796 None:intergenic 25.0%
! TAAATGACCTATATTACAGA+GGG + chr8.4:45552989-45553008 MS.gene046098:intron 25.0%
!! AATATATTGTATTGATGCAG+AGG + chr8.4:45553393-45553412 MS.gene046098:intron 25.0%
!! ATATATTGTATTGATGCAGA+GGG + chr8.4:45553394-45553413 MS.gene046098:intron 25.0%
!!! AGATTTTGAGGTATTCTTTT+CGG + chr8.4:45552685-45552704 MS.gene046098:intron 25.0%
!!! TTTTCATTTGTTGCAACAAA+TGG + chr8.4:45553210-45553229 MS.gene046098:intron 25.0%
AAAAAATTACAAGGGAAACC+CGG - chr8.4:45552904-45552923 None:intergenic 30.0%
AATCTATTCCAACAAGGATA+TGG + chr8.4:45553433-45553452 MS.gene046098:CDS 30.0%
ATCTATTCCAACAAGGATAT+GGG + chr8.4:45553434-45553453 MS.gene046098:CDS 30.0%
GAAATGACTAAAATTACAGG+AGG - chr8.4:45552882-45552901 None:intergenic 30.0%
GTAAATGACCTATATTACAG+AGG + chr8.4:45552988-45553007 MS.gene046098:intron 30.0%
TATAAATGGAGATCTTAACC+CGG - chr8.4:45553186-45553205 None:intergenic 30.0%
TCTGGTATTCTCATGAAAAT+TGG - chr8.4:45552774-45552793 None:intergenic 30.0%
! AGTATTAGAAGCAGATTTTG+AGG + chr8.4:45552673-45552692 MS.gene046098:intron 30.0%
! TATATTGTATTGATGCAGAG+GGG + chr8.4:45553395-45553414 MS.gene046098:intron 30.0%
! TGTTTTACCCTCTGTAATAT+AGG - chr8.4:45552999-45553018 None:intergenic 30.0%
!! AAATCGAAATGTTTTTGAGG+TGG - chr8.4:45553640-45553659 None:intergenic 30.0%
!! CCTGTAATTTTAGTCATTTC+CGG + chr8.4:45552882-45552901 MS.gene046098:intron 30.0%
!! CTCAAATCGAAATGTTTTTG+AGG - chr8.4:45553643-45553662 None:intergenic 30.0%
!! CTGTAATTTTAGTCATTTCC+GGG + chr8.4:45552883-45552902 MS.gene046098:intron 30.0%
!! TAGGACAAGATTTGTCATTT+TGG + chr8.4:45553914-45553933 MS.gene046098:CDS 30.0%
!!! AATCGAAATGTTTTTGAGGT+GGG - chr8.4:45553639-45553658 None:intergenic 30.0%
!!! AGGAAACCCTTATTTTTTGA+TGG + chr8.4:45553768-45553787 MS.gene046098:CDS 30.0%
!!! AGGACAAGATTTGTCATTTT+GGG + chr8.4:45553915-45553934 MS.gene046098:CDS 30.0%
!!! CCCTTATTTTTTGATGGTTT+TGG + chr8.4:45553774-45553793 MS.gene046098:CDS 30.0%
!!! GGAAAAAGTTTTAAATGGAG+AGG + chr8.4:45553231-45553250 MS.gene046098:intron 30.0%
!!! TTTTGAGATCTGGATATATC+TGG - chr8.4:45553264-45553283 None:intergenic 30.0%
ATATATAGTCGTTCTCACCA+TGG + chr8.4:45552563-45552582 MS.gene046098:intron 35.0%
CCGGAAATGACTAAAATTAC+AGG - chr8.4:45552885-45552904 None:intergenic 35.0%
CGGATATATCTCATGAAAAG+CGG - chr8.4:45553166-45553185 None:intergenic 35.0%
GGTGTTAGATTTGAACTAAG+AGG + chr8.4:45553748-45553767 MS.gene046098:CDS 35.0%
TACATAATTGGGGACAAGTT+TGG + chr8.4:45553872-45553891 MS.gene046098:CDS 35.0%
TATGGCAATCTATTCCAACA+AGG + chr8.4:45553427-45553446 MS.gene046098:CDS 35.0%
TCAATCAAAGGGTCTAATAC+TGG + chr8.4:45553835-45553854 MS.gene046098:CDS 35.0%
! ATATTGTATTGATGCAGAGG+GGG + chr8.4:45553396-45553415 MS.gene046098:intron 35.0%
! CGCTTTTCATGAGATATATC+CGG + chr8.4:45553164-45553183 MS.gene046098:intron 35.0%
! GCTTTTCATGAGATATATCC+GGG + chr8.4:45553165-45553184 MS.gene046098:intron 35.0%
!! CAAGAAGAGCACTGTAAAAA+AGG - chr8.4:45552332-45552351 None:intergenic 35.0%
!! TTGGTTTGTGAGTGTCAATA+TGG + chr8.4:45552723-45552742 MS.gene046098:intron 35.0%
!!! TAACGTGTGTTTTTGAGATC+TGG - chr8.4:45553274-45553293 None:intergenic 35.0%
!!! TTTTGAGGTATTCTTTTCGG+TGG + chr8.4:45552688-45552707 MS.gene046098:intron 35.0%
ACATCTTTGATGCACCATTG+TGG - chr8.4:45553544-45553563 None:intergenic 40.0%
ACGACAAACCTGATGGAAAT+TGG + chr8.4:45553608-45553627 MS.gene046098:CDS 40.0%
ACTCCACTGCTACATAATTG+GGG + chr8.4:45553862-45553881 MS.gene046098:CDS 40.0%
AGAAACCACAGCATTAAGCA+CGG + chr8.4:45553459-45553478 MS.gene046098:CDS 40.0%
AGCACTGTAAAAAAGGCCAA+AGG - chr8.4:45552325-45552344 None:intergenic 40.0%
ATTCTGCGTGTGTCAATCAA+AGG + chr8.4:45553823-45553842 MS.gene046098:CDS 40.0%
CATCTTTGATGCACCATTGT+GGG - chr8.4:45553543-45553562 None:intergenic 40.0%
CCAAATTACGACAAACCTGA+TGG + chr8.4:45553601-45553620 MS.gene046098:CDS 40.0%
CCATCAGGTTTGTCGTAATT+TGG - chr8.4:45553604-45553623 None:intergenic 40.0%
GAACACGTCGATATTGAACT+GGG - chr8.4:45553711-45553730 None:intergenic 40.0%
GACTCCACTGCTACATAATT+GGG + chr8.4:45553861-45553880 MS.gene046098:CDS 40.0%
GGAAGCAAACAGTAAGACTT+AGG - chr8.4:45552304-45552323 None:intergenic 40.0%
GGTTTGTCCAAATTGCCAAT+TGG - chr8.4:45553989-45554008 None:intergenic 40.0%
GTCTTACTGTTTGCTTCCTT+TGG + chr8.4:45552306-45552325 MS.gene046098:CDS 40.0%
TAACGTGTGTTTGAGAGATC+TGG - chr8.4:45552792-45552811 None:intergenic 40.0%
TCAAAGGGTCTAATACTGGT+TGG + chr8.4:45553839-45553858 MS.gene046098:CDS 40.0%
TCAGGTTTGTCGTAATTTGG+TGG - chr8.4:45553601-45553620 None:intergenic 40.0%
TGTCCAAATTGCCAATTGGA+AGG - chr8.4:45553985-45554004 None:intergenic 40.0%
TTCTGCGTGTGTCAATCAAA+GGG + chr8.4:45553824-45553843 MS.gene046098:CDS 40.0%
TTGGCATACGGGAGTTAATT+TGG + chr8.4:45553891-45553910 MS.gene046098:CDS 40.0%
! ACAATTGCCGTTTACAAAGC+AGG + chr8.4:45553679-45553698 MS.gene046098:CDS 40.0%
! CAATTGCCGTTTACAAAGCA+GGG + chr8.4:45553680-45553699 MS.gene046098:CDS 40.0%
! CATACGGGAGTTAATTTGGT+AGG + chr8.4:45553895-45553914 MS.gene046098:CDS 40.0%
! TTTCTAGCCCATATCCTTGT+TGG - chr8.4:45553444-45553463 None:intergenic 40.0%
!! GCAATCCCATTGACTCAAAA+TGG + chr8.4:45552368-45552387 MS.gene046098:CDS 40.0%
!! GGTATTCTTTTCGGTGGATT+TGG + chr8.4:45552694-45552713 MS.gene046098:intron 40.0%
!! TCGGTGGATTTGGTGAAATT+TGG + chr8.4:45552704-45552723 MS.gene046098:intron 40.0%
!!! ATCGTGCCATTTTGAGTCAA+TGG - chr8.4:45552377-45552396 None:intergenic 40.0%
!!! TCGTGCCATTTTGAGTCAAT+GGG - chr8.4:45552376-45552395 None:intergenic 40.0%
AAAATTGGCGGAGCTTTCGT+AGG - chr8.4:45554010-45554029 None:intergenic 45.0%
AGCACGGCATTATTCAACCA+TGG + chr8.4:45553475-45553494 MS.gene046098:CDS 45.0%
AGTGTGTCAATGACCCACAA+TGG + chr8.4:45553527-45553546 MS.gene046098:CDS 45.0%
CGTGTTCCATGCATCAAAAG+TGG + chr8.4:45553724-45553743 MS.gene046098:CDS 45.0%
CTTACGCATTGTTTCACCAC+CGG - chr8.4:45552428-45552447 None:intergenic 45.0%
GACGATCCCTGCTTTGTAAA+CGG - chr8.4:45553689-45553708 None:intergenic 45.0%
GCTCCTTCCAATTGGCAATT+TGG + chr8.4:45553979-45553998 MS.gene046098:CDS 45.0%
GGAACACGTCGATATTGAAC+TGG - chr8.4:45553712-45553731 None:intergenic 45.0%
GGACTCCACTGCTACATAAT+TGG + chr8.4:45553860-45553879 MS.gene046098:CDS 45.0%
GGGTTACACCAATTTCCATC+AGG - chr8.4:45553619-45553638 None:intergenic 45.0%
GTGTATAATGTTGCCAACGC+TGG + chr8.4:45553796-45553815 MS.gene046098:CDS 45.0%
GTTCCATGCATCAAAAGTGG+CGG + chr8.4:45553727-45553746 MS.gene046098:CDS 45.0%
TAATGCCGTGCTTAATGCTG+TGG - chr8.4:45553467-45553486 None:intergenic 45.0%
TACAGTGCTCTTCTTGCATG+AGG + chr8.4:45552336-45552355 MS.gene046098:CDS 45.0%
TGTCCCCAATTATGTAGCAG+TGG - chr8.4:45553868-45553887 None:intergenic 45.0%
TTCAACCATGGCTACAGATG+TGG + chr8.4:45553487-45553506 MS.gene046098:CDS 45.0%
TTGCCAATTGGAAGGAGCAA+CGG - chr8.4:45553977-45553996 None:intergenic 45.0%
TTGGGGACAAGTTTGGCATA+CGG + chr8.4:45553879-45553898 MS.gene046098:CDS 45.0%
!! AAATAAATAAAAAAATTACA+AGG - chr8.4:45552913-45552932 None:intergenic 5.0%
!! AATAAATAAAAAAATTACAA+GGG - chr8.4:45552912-45552931 None:intergenic 5.0%
!!! AATAACTATTATTTAATTTT+GGG + chr8.4:45552842-45552861 MS.gene046098:intron 5.0%
!!! TAATAACTATTATTTAATTT+TGG + chr8.4:45552841-45552860 MS.gene046098:intron 5.0%
ACCTTCTACGGTGACATGTC+CGG + chr8.4:45552406-45552425 MS.gene046098:CDS 50.0%
ATGCACCACATCTGTAGCCA+TGG - chr8.4:45553495-45553514 None:intergenic 50.0%
CTTCCGTTGCTCCTTCCAAT+TGG + chr8.4:45553971-45553990 MS.gene046098:CDS 50.0%
GATGCCCATGCAACCTTCTA+CGG + chr8.4:45552394-45552413 MS.gene046098:CDS 50.0%
GTCACCGTAGAAGGTTGCAT+GGG - chr8.4:45552401-45552420 None:intergenic 50.0%
TGGGGACAAGTTTGGCATAC+GGG + chr8.4:45553880-45553899 MS.gene046098:CDS 50.0%
TGTCACCGTAGAAGGTTGCA+TGG - chr8.4:45552402-45552421 None:intergenic 50.0%
!!! ACACCGCCACTTTTGATGCA+TGG - chr8.4:45553733-45553752 None:intergenic 50.0%
ACCGGACATGTCACCGTAGA+AGG - chr8.4:45552410-45552429 None:intergenic 55.0%
ACGCAGAATGTCACCAGCGT+TGG - chr8.4:45553812-45553831 None:intergenic 55.0%
ATTGATGCAGAGGGGGCTTG+CGG + chr8.4:45553403-45553422 MS.gene046098:intron 55.0%
GCTCTTCTTGCATGAGGCCA+TGG + chr8.4:45552342-45552361 MS.gene046098:CDS 55.0%
GTCAATGGGATTGCGAGCCA+TGG - chr8.4:45552362-45552381 None:intergenic 55.0%
TTCTACGGTGACATGTCCGG+TGG + chr8.4:45552409-45552428 MS.gene046098:CDS 55.0%
GCAGAGGGGGCTTGCGGCTA+TGG + chr8.4:45553409-45553428 MS.gene046098:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 45552298 45554032 45552298 ID=MS.gene046098
chr8.4 mRNA 45552298 45554032 45552298 ID=MS.gene046098.t1;Parent=MS.gene046098
chr8.4 exon 45552298 45552442 45552298 ID=MS.gene046098.t1.exon1;Parent=MS.gene046098.t1
chr8.4 CDS 45552298 45552442 45552298 ID=cds.MS.gene046098.t1;Parent=MS.gene046098.t1
chr8.4 exon 45553413 45554032 45553413 ID=MS.gene046098.t1.exon2;Parent=MS.gene046098.t1
chr8.4 CDS 45553413 45554032 45553413 ID=cds.MS.gene046098.t1;Parent=MS.gene046098.t1
Gene Sequence

>MS.gene046098

ATGCCTAAGTCTTACTGTTTGCTTCCTTTGGCCTTTTTTACAGTGCTCTTCTTGCATGAGGCCATGGCTCGCAATCCCATTGACTCAAAATGGCACGATGCCCATGCAACCTTCTACGGTGACATGTCCGGTGGTGAAACAATGCGTAAGTATCAAATTAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTCGTTCTCACCATGGTCTAATTTTTCTTTTTAATAGCACTTTTAGTTTTTATCTATTATAATACATAGATCAAATTGGATTCACAGCATTAACGTAGTTTTGAGTATTAGAAGCAGATTTTGAGGTATTCTTTTCGGTGGATTTGGTGAAATTTGGTTTGTGAGTGTCAATATGGCTTGACTATATTTATGAAAATACTACCAATTTTCATGAGAATACCAGATCTCTCAAACACACGTTAAATGTTGATTCCTTAGAAATACTAGTATATAATAACTATTATTTAATTTTGGGTTAATAGGGCTTTACCTCCTGTAATTTTAGTCATTTCCGGGTTTCCCTTGTAATTTTTTTATTTATTTATCCCCCTTAATTTTTTTTAGAATACCCCTTAATAGTTCATTCAAAAAACAGGGAGTAAATGACCTATATTACAGAGGGTAAAACACTATTAACCCTTTAATTTAATAATACGTTGTATAATTATTCTTTTTATGATATATTAGTCATACATACATAAAGATACTCATTAGTAGTGTATCAAAGATACTCAGTAGTAGTGTATCAATATGAATCGACTATGTTTATTAGACCGCTTTTCATGAGATATATCCGGGTTAAGATCTCCATTTATAACTTTTTTCATTTGTTGCAACAAATGGAAAAAGTTTTAAATGGAGAGGATCTTTACCAGATATATCCAGATCTCAAAAACACACGTTAAATTTGTTTGATGTGAAACCCATATTAAATGTTGATTCCTAAAAAACATTTATTTGTTATTTTGTAATTTATTTATGCCATTATTAGTTTTTTGTATATAATATATTGTATTGATGCAGAGGGGGCTTGCGGCTATGGCAATCTATTCCAACAAGGATATGGGCTAGAAACCACAGCATTAAGCACGGCATTATTCAACCATGGCTACAGATGTGGTGCATGCTTTGAGATTAAGTGTGTCAATGACCCACAATGGTGCATCAAAGATGTTAACTCAATCACTGTGACAGCGACAAATTTTTGTCCACCAAATTACGACAAACCTGATGGAAATTGGTGTAACCCACCTCAAAAACATTTCGATTTGAGCATGAAGATGTTTACAACAATTGCCGTTTACAAAGCAGGGATCGTCCCAGTTCAATATCGACGTGTTCCATGCATCAAAAGTGGCGGTGTTAGATTTGAACTAAGAGGAAACCCTTATTTTTTGATGGTTTTGGTGTATAATGTTGCCAACGCTGGTGACATTCTGCGTGTGTCAATCAAAGGGTCTAATACTGGTTGGACTCCACTGCTACATAATTGGGGACAAGTTTGGCATACGGGAGTTAATTTGGTAGGACAAGATTTGTCATTTTGGGTTACGACAAGTGATCGAAAAGCTTTACTGTTCACTTCCGTTGCTCCTTCCAATTGGCAATTTGGACAAACCTACGAAAGCTCCGCCAATTTTTAG
Protein sequence

>MS.gene046098.t1

MPKSYCLLPLAFFTVLFLHEAMARNPIDSKWHDAHATFYGDMSGGETMQGACGYGNLFQQGYGLETTALSTALFNHGYRCGACFEIKCVNDPQWCIKDVNSITVTATNFCPPNYDKPDGNWCNPPQKHFDLSMKMFTTIAVYKAGIVPVQYRRVPCIKSGGVRFELRGNPYFLMVLVYNVANAGDILRVSIKGSNTGWTPLLHNWGQVWHTGVNLVGQDLSFWVTTSDRKALLFTSVAPSNWQFGQTYESSANF