Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046147.t1 | XP_003592812.2 | 95.5 | 783 | 20 | 3 | 16 | 793 | 45 | 817 | 0.00E+00 | 1374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046147.t1 | C8VDQ4 | 32.2 | 317 | 168 | 5 | 217 | 513 | 287 | 576 | 2.5e-35 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046147.t1 | G7IAX7 | 95.5 | 783 | 20 | 3 | 16 | 793 | 45 | 817 | 0.0e+00 | 1374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046147 | MS.gene073802 | PPI |
| MS.gene029887 | MS.gene046147 | PPI |
| MS.gene30888 | MS.gene046147 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046147.t1 | MTR_1g116310 | 95.658 | 783 | 19 | 3 | 16 | 793 | 45 | 817 | 0.0 | 1511 |
| MS.gene046147.t1 | MTR_1g067150 | 59.666 | 719 | 222 | 17 | 73 | 775 | 483 | 1149 | 0.0 | 773 |
| MS.gene046147.t1 | MTR_5g098140 | 33.654 | 312 | 175 | 7 | 214 | 519 | 106 | 391 | 8.21e-49 | 177 |
| MS.gene046147.t1 | MTR_6g016590 | 31.489 | 235 | 127 | 5 | 218 | 445 | 84 | 291 | 2.91e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046147.t1 | AT3G55020 | 64.987 | 794 | 229 | 13 | 16 | 788 | 52 | 817 | 0.0 | 944 |
| MS.gene046147.t1 | AT3G55020 | 68.150 | 719 | 196 | 11 | 16 | 720 | 52 | 751 | 0.0 | 910 |
| MS.gene046147.t1 | AT2G39280 | 63.361 | 726 | 234 | 11 | 16 | 727 | 37 | 744 | 0.0 | 841 |
| MS.gene046147.t1 | AT3G55020 | 66.765 | 677 | 192 | 11 | 16 | 678 | 52 | 709 | 0.0 | 837 |
| MS.gene046147.t1 | AT2G39280 | 62.948 | 726 | 232 | 12 | 16 | 727 | 65 | 767 | 0.0 | 828 |
| MS.gene046147.t1 | AT2G37290 | 58.892 | 686 | 215 | 13 | 93 | 764 | 209 | 841 | 0.0 | 759 |
| MS.gene046147.t1 | AT2G37290 | 59.038 | 686 | 214 | 13 | 93 | 764 | 209 | 841 | 0.0 | 759 |
| MS.gene046147.t1 | AT2G37290 | 56.111 | 720 | 215 | 14 | 93 | 764 | 209 | 875 | 0.0 | 741 |
| MS.gene046147.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.46e-51 | 185 |
| MS.gene046147.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.46e-51 | 185 |
| MS.gene046147.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.46e-51 | 185 |
| MS.gene046147.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.46e-51 | 185 |
| MS.gene046147.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 190 | 521 | 100 | 396 | 1.46e-51 | 185 |
| MS.gene046147.t1 | AT5G15930 | 32.340 | 235 | 125 | 5 | 218 | 445 | 82 | 289 | 6.56e-29 | 119 |
| MS.gene046147.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 2.25e-25 | 107 |
| MS.gene046147.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 2.47e-25 | 108 |
| MS.gene046147.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 218 | 445 | 85 | 292 | 7.86e-25 | 107 |
| MS.gene046147.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 218 | 430 | 85 | 278 | 5.51e-23 | 100 |
| MS.gene046147.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 218 | 430 | 85 | 278 | 8.37e-23 | 100 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAACTTCATTTATATTT+TGG | 0.118339 | 1.3:+79275638 | None:intergenic |
| ATCGGTATACAAACCCAATT+TGG | 0.132514 | 1.3:+79276262 | None:intergenic |
| TAGAACTGCAGTTGCTTTAA+TGG | 0.133261 | 1.3:-79275880 | MS.gene046147:CDS |
| TTTCCCTCATGTTGACTTAC+AGG | 0.231638 | 1.3:+79270820 | None:intergenic |
| AGCCAATCATCTAGATTATC+TGG | 0.233143 | 1.3:-79276146 | MS.gene046147:CDS |
| CTGGCCTCCAATGGTGATTC+TGG | 0.238333 | 1.3:-79277202 | MS.gene046147:CDS |
| GCGGGAGAGGTTTCCCAAAT+TGG | 0.277262 | 1.3:-79276276 | MS.gene046147:CDS |
| TTTCTAGATCCGGGAGATTC+TGG | 0.277675 | 1.3:+79271071 | None:intergenic |
| ATCTTATGGTTGACCATAAC+TGG | 0.286814 | 1.3:+79277744 | None:intergenic |
| GGGGAAGAGAACAAAGTTTC+TGG | 0.290787 | 1.3:-79277908 | MS.gene046147:CDS |
| GGAGCTTGAAACAGCATTAA+TGG | 0.291836 | 1.3:-79273233 | MS.gene046147:CDS |
| ATTCGTGTTAATAAGAAAAC+TGG | 0.298462 | 1.3:-79277689 | MS.gene046147:CDS |
| GATCTGCCGCGGACATTTCC+TGG | 0.303734 | 1.3:-79276965 | MS.gene046147:CDS |
| CTAGATACTCCTCTTGTTGA+TGG | 0.308816 | 1.3:-79277506 | MS.gene046147:CDS |
| CTCTTGATTGTTTCTAGATC+CGG | 0.309833 | 1.3:+79271061 | None:intergenic |
| AATTTATCCCGTACAGAATC+TGG | 0.323143 | 1.3:-79275475 | MS.gene046147:CDS |
| ATATGCTTCCCAAGTGCTTC+AGG | 0.328257 | 1.3:-79272188 | MS.gene046147:intron |
| ACAGGAAACTGCAATGCTTC+AGG | 0.337217 | 1.3:-79272373 | MS.gene046147:intron |
| CTTTCTCGACCATTTGGACT+TGG | 0.337275 | 1.3:-79271002 | MS.gene046147:CDS |
| CGGGAGAGGTTTCCCAAATT+GGG | 0.339474 | 1.3:-79276275 | MS.gene046147:intron |
| CTCGACCATTTGGACTTGGA+TGG | 0.351641 | 1.3:-79270998 | MS.gene046147:CDS |
| GCTGGTTCTTCCACATTAGT+AGG | 0.355189 | 1.3:+79270856 | None:intergenic |
| TCCTTTGTTGTTACCAAGGC+TGG | 0.355345 | 1.3:+79275748 | None:intergenic |
| GTGCAGGTTGCATGGGTGAC+TGG | 0.357360 | 1.3:-79276121 | MS.gene046147:CDS |
| ATTTCCTGGTCACCCTGCTT+TGG | 0.358219 | 1.3:-79276951 | MS.gene046147:CDS |
| TCGAATAATGCGCAAGTGCT+TGG | 0.359101 | 1.3:-79275499 | MS.gene046147:CDS |
| GCTGATACTCCACCTGAAAA+TGG | 0.359223 | 1.3:-79277818 | MS.gene046147:CDS |
| AGTATTAAGAGATGATCTTA+TGG | 0.361165 | 1.3:+79277730 | None:intergenic |
| TATAAATGAAGTTCGATTGC+AGG | 0.367487 | 1.3:-79275632 | MS.gene046147:CDS |
| CACTAGAGGCTTCGTGTCCT+TGG | 0.372322 | 1.3:-79277442 | MS.gene046147:CDS |
| GTTGCTTTAATGGAGCTATA+TGG | 0.372455 | 1.3:-79275870 | MS.gene046147:intron |
| AACTGTTGCACTTGCAGAAA+TGG | 0.384197 | 1.3:-79271520 | MS.gene046147:CDS |
| AGTTTGCTTTCTCGACCATT+TGG | 0.398525 | 1.3:-79271008 | MS.gene046147:CDS |
| AGCTCAGAGAAGGGTGTTGA+TGG | 0.400403 | 1.3:-79277854 | MS.gene046147:CDS |
| CGAATAATGCGCAAGTGCTT+GGG | 0.402971 | 1.3:-79275498 | MS.gene046147:CDS |
| GAGATGGTTGCAGTTTAGTT+TGG | 0.408611 | 1.3:+79271439 | None:intergenic |
| CAAAAGGGCTTAAAGCTTTG+AGG | 0.410424 | 1.3:-79275558 | MS.gene046147:CDS |
| CGTACTCACGGTATCTTTGC+AGG | 0.412476 | 1.3:+79278237 | None:intergenic |
| ACCTCTCCCCTCAGTGCCAT+TGG | 0.417402 | 1.3:+79277383 | None:intergenic |
| TTAACCTGCTCTGGAAGATC+TGG | 0.418284 | 1.3:+79275391 | None:intergenic |
| TAGTCAAAAGGAGGAGTTAC+CGG | 0.426816 | 1.3:-79277795 | MS.gene046147:CDS |
| AATGGAGAAGAGAGCAGTTA+TGG | 0.428862 | 1.3:-79271502 | MS.gene046147:CDS |
| GCAATTGAAGAAAGATCAAA+AGG | 0.430398 | 1.3:-79275574 | MS.gene046147:CDS |
| TTGAAGAGTTGGTGCGGGAG+AGG | 0.436427 | 1.3:-79276289 | MS.gene046147:CDS |
| ATTAAAAGTAATCATCAAAA+CGG | 0.438574 | 1.3:-79277178 | MS.gene046147:CDS |
| TCGACCATTTGGACTTGGAT+GGG | 0.439304 | 1.3:-79270997 | MS.gene046147:CDS |
| AAGACGGAATTAACCTGCTC+TGG | 0.441432 | 1.3:+79275382 | None:intergenic |
| CGACCATTTGGACTTGGATG+GGG | 0.448956 | 1.3:-79270996 | MS.gene046147:CDS |
| TCGGTATACAAACCCAATTT+GGG | 0.454846 | 1.3:+79276263 | None:intergenic |
| GCGGGTAGAGAAGTATTATC+AGG | 0.455990 | 1.3:-79277230 | MS.gene046147:CDS |
| ACTTTCTGATAAACAAGAAC+AGG | 0.458805 | 1.3:-79272391 | MS.gene046147:CDS |
| TGCTGCTGCTGCACCACTAG+AGG | 0.462754 | 1.3:-79277456 | MS.gene046147:CDS |
| ATCTGGGAGTGCAGGTTGCA+TGG | 0.464025 | 1.3:-79276129 | MS.gene046147:CDS |
| AGAGGATATGATAGAGTCTC+AGG | 0.467308 | 1.3:-79276431 | MS.gene046147:intron |
| GAGTTGGAAGTTCTTGTTCG+TGG | 0.469569 | 1.3:-79277413 | MS.gene046147:CDS |
| TCAATTGCAGCTATTACAGC+TGG | 0.470313 | 1.3:+79275589 | None:intergenic |
| CTACCATCCTCGTCCAAAGC+AGG | 0.473442 | 1.3:+79276938 | None:intergenic |
| TCCCTCTGTTGGTTACTGTC+AGG | 0.474299 | 1.3:-79276873 | MS.gene046147:intron |
| GAAGTATTATCAGGATCTAC+TGG | 0.474674 | 1.3:-79277221 | MS.gene046147:CDS |
| AGCTCCAGATCTTCCAGAGC+AGG | 0.477837 | 1.3:-79275395 | MS.gene046147:intron |
| TCCCAGATAATCTAGATGAT+TGG | 0.479830 | 1.3:+79276144 | None:intergenic |
| AAAAGGGCTTAAAGCTTTGA+GGG | 0.481358 | 1.3:-79275557 | MS.gene046147:CDS |
| TTAAAAGTAATCATCAAAAC+GGG | 0.485896 | 1.3:-79277177 | MS.gene046147:CDS |
| TCTTGATTGTTTCTAGATCC+GGG | 0.486136 | 1.3:+79271062 | None:intergenic |
| TGCCTGAGGAAAATGCCTTT+TGG | 0.488127 | 1.3:-79276705 | MS.gene046147:intron |
| GTAAGTCAACATGAGGGAAA+TGG | 0.490157 | 1.3:-79270817 | MS.gene046147:CDS |
| TGGTCACCCTGCTTTGGACG+AGG | 0.490278 | 1.3:-79276945 | MS.gene046147:CDS |
| TACTTCAGTGCTTCGAGTGT+GGG | 0.492239 | 1.3:-79275940 | MS.gene046147:intron |
| TTCCCTCATGTTGACTTACA+GGG | 0.493592 | 1.3:+79270821 | None:intergenic |
| ACCTGAAAATGGTAGTCAAA+AGG | 0.493903 | 1.3:-79277807 | MS.gene046147:CDS |
| AATTCCAGAATCACCATTGG+AGG | 0.496500 | 1.3:+79277198 | None:intergenic |
| AGTTGGAAGTTCTTGTTCGT+GGG | 0.497626 | 1.3:-79277412 | MS.gene046147:CDS |
| ACAGGGCTTTCTACTACAGC+TGG | 0.498797 | 1.3:+79270838 | None:intergenic |
| CGAGACAGAGTCTTCTGTAT+TGG | 0.501438 | 1.3:-79277951 | MS.gene046147:CDS |
| TTTGAGGGATGCTAAGGGTC+TGG | 0.503136 | 1.3:-79275542 | MS.gene046147:CDS |
| CCCTTCTCTGAGCTAGCATC+AGG | 0.503203 | 1.3:+79277863 | None:intergenic |
| AGAAAAGATCAGCTATTCTC+AGG | 0.504550 | 1.3:-79274050 | MS.gene046147:intron |
| CGGTATCTTTGCAGGTGTTG+AGG | 0.504674 | 1.3:+79278245 | None:intergenic |
| AGCATCCTTTGTTGTTACCA+AGG | 0.504710 | 1.3:+79275744 | None:intergenic |
| GGGAGTTCCAATGGCACTGA+GGG | 0.506042 | 1.3:-79277390 | MS.gene046147:CDS |
| GGCTTGAGTACCTCAACAAA+TGG | 0.507338 | 1.3:-79277485 | MS.gene046147:CDS |
| GCGGGTAGAGCAAGAACAAA+AGG | 0.510673 | 1.3:-79272260 | MS.gene046147:CDS |
| TAAAGCTTTGAGGGATGCTA+AGG | 0.510952 | 1.3:-79275548 | MS.gene046147:CDS |
| TTTAATTCCAGAATCACCAT+TGG | 0.511424 | 1.3:+79277195 | None:intergenic |
| GATGGTGCAAAATCATCAAA+AGG | 0.513893 | 1.3:-79277587 | MS.gene046147:CDS |
| ACTTTACTTCAGTCATTAGC+CGG | 0.514238 | 1.3:-79275709 | MS.gene046147:CDS |
| AGATGGTTAAGCAGGACAAC+AGG | 0.514494 | 1.3:-79273210 | MS.gene046147:CDS |
| CTCACTTTATGCAGATTGCA+TGG | 0.515543 | 1.3:-79274104 | MS.gene046147:intron |
| AAAAGGTAACCTGAAGCACT+TGG | 0.516055 | 1.3:+79272179 | None:intergenic |
| CGTTAAAGTACAAGATGAGT+TGG | 0.517468 | 1.3:-79270794 | MS.gene046147:CDS |
| ACTTCCAACTCTTCTTTCCA+AGG | 0.520731 | 1.3:+79277425 | None:intergenic |
| ATCATCTCTTAATACTATTG+AGG | 0.521914 | 1.3:-79277723 | MS.gene046147:CDS |
| TCGTCCAAAGCAGGGTGACC+AGG | 0.522777 | 1.3:+79276947 | None:intergenic |
| ATTAATGGAGATGGTTAAGC+AGG | 0.523073 | 1.3:-79273218 | MS.gene046147:CDS |
| GCAAACTTATCCTCCTGGTA+GGG | 0.524898 | 1.3:+79271024 | None:intergenic |
| GAATTCATAGAGTCCAGTTA+TGG | 0.526092 | 1.3:-79277757 | MS.gene046147:CDS |
| TTGATTAGTCTTACTGGAGA+GGG | 0.527695 | 1.3:-79275430 | MS.gene046147:CDS |
| ATCATCTAAAATGCCCATCA+AGG | 0.531529 | 1.3:+79276474 | None:intergenic |
| GCTACTTTGCAGTATCAGTC+TGG | 0.532281 | 1.3:-79271462 | MS.gene046147:CDS |
| TTGTAGAACCAGATTCTGTA+CGG | 0.533433 | 1.3:+79275467 | None:intergenic |
| GTACTTCAGTGCTTCGAGTG+TGG | 0.533468 | 1.3:-79275941 | MS.gene046147:intron |
| ATTCTAGTCTCCTCGGATGC+CGG | 0.534883 | 1.3:+79277776 | None:intergenic |
| GGGCAGTTAGATGACAATGA+TGG | 0.535831 | 1.3:-79277157 | MS.gene046147:CDS |
| ACTGCTATCAAATGTGGAGC+CGG | 0.536559 | 1.3:+79275690 | None:intergenic |
| TGAAACAGCATTAATGGAGA+TGG | 0.538013 | 1.3:-79273227 | MS.gene046147:CDS |
| TCACCCCATCCAAGTCCAAA+TGG | 0.538801 | 1.3:+79270993 | None:intergenic |
| CTTAAAACATACCGTGGAGA+TGG | 0.540060 | 1.3:+79271423 | None:intergenic |
| TTGGTAACAACAAAGGATGC+TGG | 0.541111 | 1.3:-79275742 | MS.gene046147:CDS |
| TCTAGATTATCTGGGAGTGC+AGG | 0.544285 | 1.3:-79276137 | MS.gene046147:CDS |
| AGAAAGCAAACTTATCCTCC+TGG | 0.545441 | 1.3:+79271019 | None:intergenic |
| ACCTGATGCTAGCTCAGAGA+AGG | 0.548837 | 1.3:-79277864 | MS.gene046147:CDS |
| GTGTCCTTGGAAAGAAGAGT+TGG | 0.552169 | 1.3:-79277429 | MS.gene046147:CDS |
| TGTGTCAACAGGGATGCCTA+TGG | 0.558632 | 1.3:-79278281 | None:intergenic |
| CTGGTAGGGGTATCCATCGT+AGG | 0.559442 | 1.3:+79271038 | None:intergenic |
| ACAAGAGGAGTATCTAGACT+AGG | 0.560908 | 1.3:+79277512 | None:intergenic |
| AGTTATGGCTGAGTCTATGC+TGG | 0.562409 | 1.3:-79271487 | MS.gene046147:CDS |
| AGGTGTGGTAAAAGATGAGC+TGG | 0.563044 | 1.3:-79277639 | MS.gene046147:CDS |
| TCTTCACAGCCAGAATCTCC+CGG | 0.563964 | 1.3:-79271080 | MS.gene046147:CDS |
| GGCAGTTAGATGACAATGAT+GGG | 0.564494 | 1.3:-79277156 | MS.gene046147:CDS |
| AAAGATGAAAGAAATAAGAA+AGG | 0.564961 | 1.3:-79277659 | MS.gene046147:CDS |
| CAGTTCTAAATAGCATGACT+CGG | 0.565813 | 1.3:+79275895 | None:intergenic |
| CACCCTGCTTTGGACGAGGA+TGG | 0.566489 | 1.3:-79276941 | MS.gene046147:CDS |
| TGTGGGTGTCAAAGCAAGGC+GGG | 0.567027 | 1.3:-79277248 | MS.gene046147:CDS |
| AACATGCTTCCTTGGGAAAG+TGG | 0.568071 | 1.3:-79276073 | MS.gene046147:intron |
| AAGAGGAAAGGTCCGAGCGG+TGG | 0.571481 | 1.3:-79277997 | MS.gene046147:CDS |
| TCTATGAATTCTAGTCTCCT+CGG | 0.571616 | 1.3:+79277769 | None:intergenic |
| TCCAATGGCACTGAGGGGAG+AGG | 0.572143 | 1.3:-79277384 | MS.gene046147:intron |
| ATCATCAAAAGGAGCATGTG+AGG | 0.573179 | 1.3:-79277576 | MS.gene046147:CDS |
| TGTAGAACCAGATTCTGTAC+GGG | 0.579242 | 1.3:+79275468 | None:intergenic |
| GCCAATCATCTAGATTATCT+GGG | 0.580459 | 1.3:-79276145 | MS.gene046147:CDS |
| CAGGATCTACTGGCCTCCAA+TGG | 0.580957 | 1.3:-79277211 | MS.gene046147:CDS |
| GCTCGACATAATCCCTCTGT+TGG | 0.584398 | 1.3:-79276884 | MS.gene046147:CDS |
| TTTGATTAGTCTTACTGGAG+AGG | 0.585523 | 1.3:-79275431 | MS.gene046147:CDS |
| CAAACTTATCCTCCTGGTAG+GGG | 0.586096 | 1.3:+79271025 | None:intergenic |
| GGAGGAGTTACCGGCATCCG+AGG | 0.588034 | 1.3:-79277786 | MS.gene046147:CDS |
| TGGATGGGGTGATCGAAACA+AGG | 0.588081 | 1.3:-79270982 | MS.gene046147:intron |
| CTACGATGGATACCCCTACC+AGG | 0.588101 | 1.3:-79271037 | MS.gene046147:CDS |
| TTCAGGAGGAAGAAGAGGAA+AGG | 0.588650 | 1.3:-79278009 | MS.gene046147:intron |
| TACCATCCTCGTCCAAAGCA+GGG | 0.589974 | 1.3:+79276939 | None:intergenic |
| TCTGGGAGTGCAGGTTGCAT+GGG | 0.591256 | 1.3:-79276128 | MS.gene046147:CDS |
| GCTCAGAGAAGGGTGTTGAT+GGG | 0.591623 | 1.3:-79277853 | MS.gene046147:CDS |
| AGCAGCAATACCATTTGTTG+AGG | 0.591699 | 1.3:+79277475 | None:intergenic |
| CAAGAGGAGTATCTAGACTA+GGG | 0.592003 | 1.3:+79277513 | None:intergenic |
| AAAAGGTTACAGAGGATGCT+CGG | 0.593286 | 1.3:-79272243 | MS.gene046147:CDS |
| CAATACAGAAGACTCTGTCT+CGG | 0.596388 | 1.3:+79277952 | None:intergenic |
| GTTTCTGGTGCTGAATCTGT+AGG | 0.597964 | 1.3:-79277893 | MS.gene046147:CDS |
| ATGTCTTGTAGGTCCAGCCT+TGG | 0.598613 | 1.3:-79275761 | MS.gene046147:intron |
| ATAGGGGAAACCTACTAATG+TGG | 0.602696 | 1.3:-79270866 | MS.gene046147:intron |
| GGTTAAGCAGGACAACAGGC+GGG | 0.603079 | 1.3:-79273206 | MS.gene046147:CDS |
| ATTTCTGATAGGTCTTGATG+CGG | 0.605171 | 1.3:-79272279 | MS.gene046147:intron |
| GCAAGAACAAAAGGTTACAG+AGG | 0.606679 | 1.3:-79272251 | MS.gene046147:CDS |
| GGTAGAGCGACTAGAAGAAG+AGG | 0.611682 | 1.3:-79272433 | MS.gene046147:CDS |
| AAGCTGACTGCTATCAAATG+TGG | 0.615286 | 1.3:+79275684 | None:intergenic |
| AAAGGTAACCTGAAGCACTT+GGG | 0.617219 | 1.3:+79272180 | None:intergenic |
| TGGTTAAGCAGGACAACAGG+CGG | 0.617927 | 1.3:-79273207 | MS.gene046147:CDS |
| AAGCCCTGTAAGTCAACATG+AGG | 0.619652 | 1.3:-79270824 | MS.gene046147:CDS |
| AGGTCGCACAGTAAATCCAT+AGG | 0.619964 | 1.3:+79278265 | None:intergenic |
| AGGAGCTGAGGAATAAACAT+AGG | 0.621180 | 1.3:-79275612 | MS.gene046147:CDS |
| CAAGGACACGAAGCCTCTAG+TGG | 0.621659 | 1.3:+79277443 | None:intergenic |
| AGCAAACTTATCCTCCTGGT+AGG | 0.622299 | 1.3:+79271023 | None:intergenic |
| TTGGAAGTTCTTGTTCGTGG+GGG | 0.625449 | 1.3:-79277410 | MS.gene046147:CDS |
| TTGCATGGGTGACTGGACCA+TGG | 0.630069 | 1.3:-79276114 | MS.gene046147:CDS |
| GTTGGAAGTTCTTGTTCGTG+GGG | 0.634337 | 1.3:-79277411 | MS.gene046147:CDS |
| GAGTCACTATCTCTTGCTGA+TGG | 0.635928 | 1.3:-79277605 | MS.gene046147:CDS |
| TGAAAGAAATAAGAAAGGTG+TGG | 0.636747 | 1.3:-79277654 | MS.gene046147:CDS |
| AAGTTCGATTGCAGGAGCTG+AGG | 0.637148 | 1.3:-79275624 | MS.gene046147:CDS |
| GACACAAACAGAATACCTGT+GGG | 0.637309 | 1.3:-79277929 | MS.gene046147:CDS |
| TCCAGCCTTGGTAACAACAA+AGG | 0.637738 | 1.3:-79275749 | MS.gene046147:CDS |
| GGGGAGTTCCAATGGCACTG+AGG | 0.638061 | 1.3:-79277391 | MS.gene046147:CDS |
| AGGAGTTCTATGATGTTGAG+AGG | 0.638153 | 1.3:-79277541 | MS.gene046147:CDS |
| ATGGAAAGGACAGATTGAGA+AGG | 0.639006 | 1.3:-79277098 | MS.gene046147:intron |
| GGACACAAACAGAATACCTG+TGG | 0.639412 | 1.3:-79277930 | MS.gene046147:CDS |
| TTTCTGATAGGTCTTGATGC+GGG | 0.639713 | 1.3:-79272278 | MS.gene046147:intron |
| AAAGCTTTGAGGGATGCTAA+GGG | 0.642149 | 1.3:-79275547 | MS.gene046147:CDS |
| ACCTGACAGTAACCAACAGA+GGG | 0.642883 | 1.3:+79276872 | None:intergenic |
| CAATTGAAGAAAGATCAAAA+GGG | 0.650314 | 1.3:-79275573 | MS.gene046147:CDS |
| TGAAAATGGTAGTCAAAAGG+AGG | 0.652128 | 1.3:-79277804 | MS.gene046147:CDS |
| CACAAACAGAATACCTGTGG+GGG | 0.652862 | 1.3:-79277927 | MS.gene046147:CDS |
| GTACTCAAGCCATCAACAAG+AGG | 0.653340 | 1.3:+79277497 | None:intergenic |
| AAACAATCAAGAGCCTACGA+TGG | 0.655319 | 1.3:-79271051 | MS.gene046147:CDS |
| CTAAACTGCAACCATCTCCA+CGG | 0.655642 | 1.3:-79271434 | MS.gene046147:intron |
| TTCGTGTTAATAAGAAAACT+GGG | 0.656298 | 1.3:-79277688 | MS.gene046147:CDS |
| CAGGCGGGAACTGAGCGCCA+AGG | 0.658763 | 1.3:-79273191 | MS.gene046147:intron |
| CCTGATGCTAGCTCAGAGAA+GGG | 0.661370 | 1.3:-79277863 | MS.gene046147:CDS |
| GGGTGACCAGGAAATGTCCG+CGG | 0.668654 | 1.3:+79276959 | None:intergenic |
| AAAACCTGACCACTTTCCCA+AGG | 0.674975 | 1.3:+79276064 | None:intergenic |
| TTGTGGGTGTCAAAGCAAGG+CGG | 0.684016 | 1.3:-79277249 | MS.gene046147:CDS |
| GGAGTTCCAATGGCACTGAG+GGG | 0.686267 | 1.3:-79277389 | MS.gene046147:CDS |
| GACCTGACAGTAACCAACAG+AGG | 0.688150 | 1.3:+79276871 | None:intergenic |
| AGCCCTGTAAGTCAACATGA+GGG | 0.698307 | 1.3:-79270823 | MS.gene046147:CDS |
| ATGTGAGGAAGATTCTGACG+AGG | 0.698919 | 1.3:-79277561 | MS.gene046147:CDS |
| TGTTTGTGCAGGATCTGCCG+CGG | 0.713471 | 1.3:-79276976 | MS.gene046147:intron |
| AAGAAGAGGAAAGGTCCGAG+CGG | 0.722767 | 1.3:-79278000 | MS.gene046147:CDS |
| CGATGGATACCCCTACCAGG+AGG | 0.749834 | 1.3:-79271034 | MS.gene046147:CDS |
| ACACAAACAGAATACCTGTG+GGG | 0.755400 | 1.3:-79277928 | MS.gene046147:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 79270783 | 79278290 | 79270783 | ID=MS.gene046147 |
| chr1.3 | mRNA | 79270783 | 79278290 | 79270783 | ID=MS.gene046147.t1;Parent=MS.gene046147 |
| chr1.3 | exon | 79278246 | 79278290 | 79278246 | ID=MS.gene046147.t1.exon1;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79278246 | 79278290 | 79278246 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79277385 | 79278026 | 79277385 | ID=MS.gene046147.t1.exon2;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79277385 | 79278026 | 79277385 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79277099 | 79277284 | 79277099 | ID=MS.gene046147.t1.exon3;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79277099 | 79277284 | 79277099 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79276874 | 79276987 | 79276874 | ID=MS.gene046147.t1.exon4;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79276874 | 79276987 | 79276874 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79276706 | 79276764 | 79276706 | ID=MS.gene046147.t1.exon5;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79276706 | 79276764 | 79276706 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79276432 | 79276498 | 79276432 | ID=MS.gene046147.t1.exon6;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79276432 | 79276498 | 79276432 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79276276 | 79276327 | 79276276 | ID=MS.gene046147.t1.exon7;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79276276 | 79276327 | 79276276 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79276074 | 79276166 | 79276074 | ID=MS.gene046147.t1.exon8;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79276074 | 79276166 | 79276074 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79275871 | 79275954 | 79275871 | ID=MS.gene046147.t1.exon9;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79275871 | 79275954 | 79275871 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79275396 | 79275772 | 79275396 | ID=MS.gene046147.t1.exon10;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79275396 | 79275772 | 79275396 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79274051 | 79274112 | 79274051 | ID=MS.gene046147.t1.exon11;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79274051 | 79274112 | 79274051 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79273192 | 79273261 | 79273192 | ID=MS.gene046147.t1.exon12;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79273192 | 79273261 | 79273192 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79272374 | 79272454 | 79272374 | ID=MS.gene046147.t1.exon13;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79272374 | 79272454 | 79272374 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79272189 | 79272290 | 79272189 | ID=MS.gene046147.t1.exon14;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79272189 | 79272290 | 79272189 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79271435 | 79271559 | 79271435 | ID=MS.gene046147.t1.exon15;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79271435 | 79271559 | 79271435 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79270983 | 79271103 | 79270983 | ID=MS.gene046147.t1.exon16;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79270983 | 79271103 | 79270983 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| chr1.3 | exon | 79270783 | 79270884 | 79270783 | ID=MS.gene046147.t1.exon17;Parent=MS.gene046147.t1 |
| chr1.3 | CDS | 79270783 | 79270884 | 79270783 | ID=cds.MS.gene046147.t1;Parent=MS.gene046147.t1 |
| Gene Sequence |
| Protein sequence |
