AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047683.t1 MTR_5g018270 97.770 538 12 0 1 538 1 538 0.0 1084
MS.gene047683.t1 MTR_8g479390 81.395 516 93 2 25 537 25 540 0.0 885
MS.gene047683.t1 MTR_8g479380 66.539 523 170 4 15 533 13 534 0.0 728
MS.gene047683.t1 MTR_4g132320 63.148 540 195 2 1 536 1 540 0.0 684
MS.gene047683.t1 MTR_4g049390 61.346 520 197 2 22 537 18 537 0.0 673
MS.gene047683.t1 MTR_4g048350 61.731 520 194 3 22 537 18 536 0.0 669
MS.gene047683.t1 MTR_4g075690 58.647 532 217 2 9 537 8 539 0.0 649
MS.gene047683.t1 MTR_3g115050 59.134 531 211 3 11 537 12 540 0.0 648
MS.gene047683.t1 MTR_2g088080 60.971 515 197 2 26 536 25 539 0.0 645
MS.gene047683.t1 MTR_1g026410 58.879 535 214 3 9 537 5 539 0.0 641
MS.gene047683.t1 MTR_4g083190 53.432 539 234 5 6 531 4 538 0.0 582
MS.gene047683.t1 MTR_2g088080 60.699 458 176 2 83 536 1 458 0.0 561
MS.gene047683.t1 MTR_3g083440 50.936 534 248 4 10 531 5 536 0.0 560
MS.gene047683.t1 MTR_3g083390 50.936 534 248 4 10 531 5 536 0.0 560
MS.gene047683.t1 MTR_4g083210 51.509 530 247 4 10 531 5 532 0.0 559
MS.gene047683.t1 MTR_3g083430 50.749 534 249 4 10 531 5 536 0.0 559
MS.gene047683.t1 MTR_3g083450 52.115 520 236 3 24 531 19 537 0.0 557
MS.gene047683.t1 MTR_3g083400 50.749 534 249 4 10 531 5 536 0.0 557
MS.gene047683.t1 MTR_4g075690 58.636 440 179 2 9 445 8 447 0.0 535
MS.gene047683.t1 MTR_4g101650 50.092 545 249 7 11 532 7 551 4.95e-179 517
MS.gene047683.t1 MTR_3g083410 50.407 492 231 3 52 531 10 500 7.54e-178 511
MS.gene047683.t1 MTR_3g008580 48.352 546 258 7 9 531 8 552 2.19e-175 508
MS.gene047683.t1 MTR_7g051440 50.476 525 238 8 28 531 26 549 7.76e-170 494
MS.gene047683.t1 MTR_1g090707 48.643 516 249 8 32 532 24 538 9.30e-159 465
MS.gene047683.t1 MTR_4g133150 56.585 205 68 3 138 338 24 211 2.36e-65 211
MS.gene047683.t1 MTR_3g078740 27.723 606 338 22 4 531 2 585 4.93e-56 198
MS.gene047683.t1 MTR_3g078700 27.352 574 314 19 13 531 11 536 7.28e-54 191
MS.gene047683.t1 MTR_4g015120 26.903 565 357 16 8 530 7 557 2.46e-52 187
MS.gene047683.t1 MTR_5g020600 27.829 539 324 18 7 496 10 532 9.42e-52 186
MS.gene047683.t1 MTR_8g091390 28.120 569 335 17 21 535 24 572 1.07e-51 186
MS.gene047683.t1 MTR_5g020620 29.868 529 313 19 7 490 6 521 9.07e-51 183
MS.gene047683.t1 MTR_5g069680 25.394 571 364 15 9 530 1 558 5.87e-49 178
MS.gene047683.t1 MTR_3g078730 27.491 582 314 21 7 531 5 535 2.53e-46 170
MS.gene047683.t1 MTR_5g081810 26.554 531 331 16 45 530 13 529 3.64e-44 164
MS.gene047683.t1 MTR_5g073210 26.916 535 332 20 10 496 3 526 4.22e-44 164
MS.gene047683.t1 MTR_3g462760 24.675 539 359 14 31 530 26 556 6.96e-44 164
MS.gene047683.t1 MTR_3g071890 26.769 523 329 14 10 486 12 526 1.22e-43 163
MS.gene047683.t1 MTR_3g101640 26.354 554 347 16 11 514 13 555 1.36e-41 157
MS.gene047683.t1 MTR_5g083360 26.987 541 323 20 7 490 2 527 5.85e-40 153
MS.gene047683.t1 MTR_5g018290 94.030 67 4 0 472 538 5 71 8.41e-40 139
MS.gene047683.t1 MTR_3g101635 25.939 559 342 18 14 518 14 554 5.83e-39 150
MS.gene047683.t1 MTR_7g065970 25.442 566 344 18 9 513 5 553 3.50e-38 148
MS.gene047683.t1 MTR_7g065980 25.216 579 355 19 12 530 11 571 8.62e-38 147
MS.gene047683.t1 MTR_7g062250 25.836 538 334 18 12 496 19 544 1.74e-37 146
MS.gene047683.t1 MTR_8g027375 24.226 549 368 16 9 514 12 555 9.26e-37 144
MS.gene047683.t1 MTR_2g008330 23.909 573 385 15 5 530 11 579 4.57e-35 139
MS.gene047683.t1 MTR_7g058690 24.815 540 346 18 7 496 17 546 1.93e-34 137
MS.gene047683.t1 MTR_7g458880 25.092 542 352 19 7 496 7 546 2.10e-34 137
MS.gene047683.t1 MTR_7g062310 23.350 591 387 13 1 530 8 593 1.85e-33 134
MS.gene047683.t1 MTR_7g060460 25.181 552 352 21 1 496 1 547 6.90e-33 132
MS.gene047683.t1 MTR_4g064530 23.933 539 354 15 3 490 12 545 1.12e-30 126
MS.gene047683.t1 MTR_4g019225 25.000 552 353 16 33 530 28 572 1.87e-30 125
MS.gene047683.t1 MTR_4g064530 23.836 537 353 15 3 488 12 543 3.09e-29 122
MS.gene047683.t1 MTR_4g133160 42.056 107 48 2 414 520 3 95 5.47e-20 85.1
MS.gene047683.t1 MTR_5g081790 31.081 148 81 5 360 488 275 420 1.56e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047683.t1 AT5G66920 73.308 517 136 1 23 537 29 545 0.0 804
MS.gene047683.t1 AT4G37160 64.717 530 183 3 8 533 8 537 0.0 691
MS.gene047683.t1 AT2G23630 65.900 522 173 3 20 538 19 538 0.0 689
MS.gene047683.t1 AT2G23630 65.900 522 173 3 20 538 24 543 0.0 689
MS.gene047683.t1 AT4G22010 60.452 531 205 3 12 537 7 537 0.0 664
MS.gene047683.t1 AT1G76160 59.013 527 213 2 13 536 10 536 0.0 645
MS.gene047683.t1 AT1G21850 57.963 540 221 4 1 537 1 537 0.0 634
MS.gene047683.t1 AT1G21860 57.778 540 222 4 1 537 1 537 0.0 633
MS.gene047683.t1 AT1G41830 56.425 537 227 3 4 537 6 538 0.0 629
MS.gene047683.t1 AT4G38420 56.929 534 220 4 14 537 13 546 0.0 615
MS.gene047683.t1 AT1G55570 55.000 540 229 4 9 535 7 545 0.0 594
MS.gene047683.t1 AT3G13400 54.833 538 229 4 11 535 6 542 0.0 587
MS.gene047683.t1 AT3G13400 54.833 538 229 4 11 535 6 542 0.0 587
MS.gene047683.t1 AT1G55560 53.532 538 236 4 11 535 5 541 0.0 582
MS.gene047683.t1 AT3G13390 56.130 522 215 4 27 535 24 544 0.0 577
MS.gene047683.t1 AT4G28090 52.552 529 241 5 13 533 11 537 0.0 573
MS.gene047683.t1 AT4G37160 64.706 442 152 3 8 445 8 449 0.0 572
MS.gene047683.t1 AT4G12420 50.549 546 247 6 9 531 3 548 0.0 545
MS.gene047683.t1 AT4G12420 50.549 546 247 6 9 531 3 548 0.0 545
MS.gene047683.t1 AT5G48450 52.328 537 241 8 11 532 8 544 0.0 539
MS.gene047683.t1 AT5G48450 52.328 537 241 8 11 532 8 544 0.0 538
MS.gene047683.t1 AT4G38420 56.596 470 194 4 13 472 12 481 0.0 532
MS.gene047683.t1 AT1G75790 48.624 545 252 8 13 533 4 544 1.31e-178 514
MS.gene047683.t1 AT4G25240 49.545 549 254 9 5 531 4 551 1.88e-177 513
MS.gene047683.t1 AT4G25240 49.545 549 254 9 5 531 4 551 1.88e-177 513
MS.gene047683.t1 AT5G51480 49.623 530 242 10 26 531 23 551 1.74e-176 510
MS.gene047683.t1 AT4G38420 56.885 443 181 4 13 445 12 454 3.48e-176 504
MS.gene047683.t1 AT5G21105 28.348 575 334 19 15 531 22 576 3.44e-60 209
MS.gene047683.t1 AT4G39830 27.568 584 357 13 3 532 8 579 4.15e-58 203
MS.gene047683.t1 AT5G21100 28.468 555 320 18 34 531 27 561 9.22e-58 202
MS.gene047683.t1 AT5G21105 28.947 532 305 17 15 488 22 538 3.02e-57 200
MS.gene047683.t1 AT5G58910 27.241 580 351 20 4 530 5 566 6.04e-51 183
MS.gene047683.t1 AT5G58910 26.770 579 356 19 4 530 5 567 7.59e-51 183
MS.gene047683.t1 AT2G38080 24.021 562 369 15 14 530 10 558 5.49e-47 172
MS.gene047683.t1 AT5G58910 26.952 538 320 18 45 530 7 523 1.95e-45 167
MS.gene047683.t1 AT5G01190 25.397 567 369 13 8 530 2 558 1.66e-44 166
MS.gene047683.t1 AT5G09360 27.536 552 322 20 5 500 9 538 2.99e-44 165
MS.gene047683.t1 AT5G03260 27.080 565 356 18 9 530 6 557 5.49e-44 164
MS.gene047683.t1 AT2G30210 26.702 573 360 20 9 530 7 570 5.71e-44 164
MS.gene047683.t1 AT5G05390 27.410 529 327 17 9 490 7 525 1.21e-43 163
MS.gene047683.t1 AT4G39830 27.403 489 290 12 97 532 8 484 1.33e-42 159
MS.gene047683.t1 AT4G39830 27.403 489 290 12 97 532 6 482 1.41e-42 159
MS.gene047683.t1 AT5G01190 25.954 524 334 13 51 530 31 544 2.39e-42 159
MS.gene047683.t1 AT5G01050 24.570 582 369 16 3 532 7 570 4.11e-42 159
MS.gene047683.t1 AT2G46570 24.779 565 375 15 9 530 12 569 9.04e-39 149
MS.gene047683.t1 AT5G07130 26.619 556 342 21 14 514 9 553 3.32e-38 148
MS.gene047683.t1 AT4G39830 26.176 489 283 12 97 532 8 471 2.02e-37 144
MS.gene047683.t1 AT5G48100 25.836 538 331 17 33 515 24 548 2.23e-37 145
MS.gene047683.t1 AT5G01040 25.394 571 358 17 14 532 14 568 2.82e-36 142
MS.gene047683.t1 AT2G40370 25.594 547 329 19 10 490 6 540 5.79e-36 142
MS.gene047683.t1 AT2G29130 25.440 511 335 15 31 496 30 539 7.46e-35 138
MS.gene047683.t1 AT5G21105 28.571 343 209 10 211 531 57 385 8.16e-35 135
MS.gene047683.t1 AT1G18140 24.335 526 315 17 33 490 31 541 2.68e-33 134
MS.gene047683.t1 AT3G09220 23.757 543 354 16 2 496 3 533 1.57e-31 129
MS.gene047683.t1 AT5G60020 23.397 577 382 18 12 530 3 577 4.68e-31 127
MS.gene047683.t1 AT5G60020 24.349 538 347 18 12 491 3 538 1.75e-29 122
MS.gene047683.t1 AT5G60020 23.464 537 354 17 49 530 11 545 2.11e-29 122
MS.gene047683.t1 AT2G46570 25.103 486 316 14 88 530 4 484 9.49e-29 119
MS.gene047683.t1 AT5G07130 25.420 476 291 20 94 514 2 468 6.77e-24 105
MS.gene047683.t1 AT5G07130 25.420 476 291 20 94 514 2 468 6.77e-24 105
MS.gene047683.t1 AT3G09220 23.918 439 283 13 104 496 3 436 3.02e-21 97.1

Find 120 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACCAAAAGAATATATT+TGG 0.166156 5.3:+10339776 MS.gene047683:CDS
TTGAGACAATCTTTAGATTT+AGG 0.168571 5.3:+10338787 MS.gene047683:CDS
CTCAATCAACTTTAGAATTC+AGG 0.185567 5.3:+10339025 MS.gene047683:CDS
GTCCTTTGGAGGTTGATTTA+AGG 0.210344 5.3:-10339150 None:intergenic
GCAAGTTTAAGAGGGGTATC+AGG 0.239219 5.3:-10339864 None:intergenic
CAAGTGAATCATATAGATTT+TGG 0.246728 5.3:-10339091 None:intergenic
CCACAACGCAGAGCATTATT+AGG 0.254641 5.3:-10340843 None:intergenic
TTCATGGCAAGATGGAGTTT+TGG 0.281875 5.3:+10338072 MS.gene047683:CDS
TTTCAAACCAAGGATCAAAT+TGG 0.285144 5.3:+10338139 MS.gene047683:CDS
AATATTGCTGTCCAAGAGTT+TGG 0.289589 5.3:-10340693 None:intergenic
TTGATTAATGGTCAGTTTCC+TGG 0.297368 5.3:+10337455 MS.gene047683:CDS
TACACATGGACTGTGACTTA+TGG 0.307708 5.3:+10337307 MS.gene047683:CDS
TAATTTGAGTTTGGAGGAAT+AGG 0.313962 5.3:-10338106 None:intergenic
CCACAAGGGTCATTCCATTA+TGG 0.322201 5.3:+10339744 MS.gene047683:CDS
TTGGAATTATCTTTCCATAA+TGG 0.324968 5.3:-10339758 None:intergenic
AAACTCTTGGACAGCAATAT+TGG 0.326496 5.3:+10340695 MS.gene047683:CDS
CTCCATCAGGATTTGGATAA+GGG 0.326577 5.3:-10338252 None:intergenic
ATTGATTGCAGTTATGGTTC+TGG 0.329329 5.3:+10340178 MS.gene047683:intron
CAAGGCATCCACTAGATTAT+AGG 0.334627 5.3:-10340227 None:intergenic
CATAAAGCTGCTGGAGGGTT+TGG 0.337768 5.3:+10338193 MS.gene047683:CDS
GCTGATTACTTCAACATTCC+TGG 0.338827 5.3:+10339885 MS.gene047683:CDS
ATTGGCCAAATATATTCTTT+TGG 0.345775 5.3:-10339781 None:intergenic
TATGGAATTCTTTCTCCTCT+TGG 0.345856 5.3:+10337325 MS.gene047683:CDS
ATTAGGAATGTCGTATTCAT+TGG 0.349261 5.3:-10340826 None:intergenic
GTAAAATCTCCATCAGGATT+TGG 0.353040 5.3:-10338259 None:intergenic
TTGTAAGTATAATTTGAGTT+TGG 0.365073 5.3:-10338115 None:intergenic
CCTCACCAAGTTAGTAGAAA+TGG 0.367092 5.3:-10337542 None:intergenic
TGAAGCAAGCTAGAACTTAC+AGG 0.368666 5.3:+10339306 MS.gene047683:CDS
TGGAATGACCCTTGTGGGTT+AGG 0.375841 5.3:-10339738 None:intergenic
GACAGCAATATTGGTGTCAT+TGG 0.377118 5.3:+10340704 MS.gene047683:CDS
AAGATATTGTCTTTCCCATA+TGG 0.379656 5.3:-10340757 None:intergenic
ATTGATCAATGGTGCTGAAT+TGG 0.381881 5.3:-10339799 None:intergenic
TTACTCTTCTCATTGGTGAT+TGG 0.382269 5.3:+10338278 MS.gene047683:CDS
ATGCAATCTTGGCACCTTGA+TGG 0.391608 5.3:+10340026 MS.gene047683:CDS
ATAAGTTCCAATTTGATCCT+TGG 0.398271 5.3:-10338146 None:intergenic
GTGAAAATAACATGCAATCT+TGG 0.409939 5.3:+10340015 MS.gene047683:CDS
TCAATCAACTTTAGAATTCA+GGG 0.421010 5.3:+10339026 MS.gene047683:CDS
CATAATGGAATGACCCTTGT+GGG 0.423157 5.3:-10339743 None:intergenic
TCTCCATCAGGATTTGGATA+AGG 0.425122 5.3:-10338253 None:intergenic
AACTCTCGTTCCTCAGCATC+AGG 0.430959 5.3:+10339242 MS.gene047683:CDS
ACTAAAATGCATAAAGCTGC+TGG 0.431983 5.3:+10338184 MS.gene047683:CDS
CCTGATGGGCTCCTTATCAA+TGG 0.433708 5.3:+10338826 MS.gene047683:CDS
TAAGTATAATTTGAGTTTGG+AGG 0.437329 5.3:-10338112 None:intergenic
CAAGTTCATTCCACCTTCAC+TGG 0.440625 5.3:+10338850 MS.gene047683:CDS
AGGGGTATCAGGGTTAATAT+AGG 0.445205 5.3:-10339853 None:intergenic
CTAAAACTAGTCGAAGTTGA+AGG 0.449028 5.3:+10339056 MS.gene047683:CDS
TATAGGTATATCCAAACTCT+TGG 0.453504 5.3:+10340682 MS.gene047683:intron
CCATTGATAAGGAGCCCATC+AGG 0.455106 5.3:-10338826 None:intergenic
AAGTAATCAGCAAGTTTAAG+AGG 0.459151 5.3:-10339873 None:intergenic
ATGAGCCATTTCTACTAACT+TGG 0.461538 5.3:+10337537 MS.gene047683:CDS
GCAACAATGTAATAGTCCTT+TGG 0.463420 5.3:-10339164 None:intergenic
ATATGTGCAGGACCATTAGA+TGG 0.466940 5.3:-10339933 None:intergenic
GGAACTTGAGATCAGCCATA+TGG 0.467224 5.3:+10340742 MS.gene047683:CDS
TCAGGATTTGGATAAGGGAT+TGG 0.469027 5.3:-10338247 None:intergenic
TTGGACAACAGTTGTATATG+AGG 0.472580 5.3:+10340778 MS.gene047683:CDS
GACCAGTCATAATTGTCAGC+AGG 0.473259 5.3:-10339281 None:intergenic
CGGAGCTTTCCATTGATCAA+TGG 0.473382 5.3:-10339810 None:intergenic
AAAGCTGCTGGAGGGTTTGG+AGG 0.476783 5.3:+10338196 MS.gene047683:CDS
ATTCAGACTACTCCATCTAA+TGG 0.483356 5.3:+10339921 MS.gene047683:CDS
CTGCGTTGTGGCAAAGCATT+GGG 0.484504 5.3:+10340855 MS.gene047683:CDS
TTCTCTTCATGATTTCATTG+AGG 0.488380 5.3:+10339977 MS.gene047683:CDS
TTAGATTTAGGAAAATCTCT+TGG 0.492903 5.3:+10338799 MS.gene047683:CDS
ATATGGGAAAGACAATATCT+TGG 0.497914 5.3:+10340759 MS.gene047683:CDS
TCTCATTGGTGATTGGTACA+AGG 0.499991 5.3:+10338285 MS.gene047683:CDS
TTCTACTAGCATCTGTCCAT+TGG 0.500133 5.3:-10340201 None:intergenic
GCAGTTATGGTTCTGGCCAA+TGG 0.502544 5.3:+10340185 MS.gene047683:intron
CTGAATTCTAAAGTTGATTG+AGG 0.506388 5.3:-10339024 None:intergenic
GAACTTGAGATCAGCCATAT+GGG 0.512652 5.3:+10340743 MS.gene047683:CDS
AATGAACTTGACCATTGATA+AGG 0.514250 5.3:-10338837 None:intergenic
CCTAATAATGCTCTGCGTTG+TGG 0.524629 5.3:+10340843 MS.gene047683:CDS
ATCTCAAGTTCCACATACCT+TGG 0.525823 5.3:-10340731 None:intergenic
AGAAGAGTAAAATCTCCATC+AGG 0.529272 5.3:-10338265 None:intergenic
CAAGTTTAAGAGGGGTATCA+GGG 0.530536 5.3:-10339863 None:intergenic
AACAGTTGTATATGAGGGTG+TGG 0.532794 5.3:+10340784 MS.gene047683:CDS
ATAAACCCACATTTGAGATC+CGG 0.537702 5.3:-10338998 None:intergenic
ATCCCTTATCCAAATCCTGA+TGG 0.543230 5.3:+10338250 MS.gene047683:CDS
ATTACCTTGGTTACCAGTGA+AGG 0.544886 5.3:-10338863 None:intergenic
TATGTCACTTACCTTGTGGC+TGG 0.544933 5.3:-10338308 None:intergenic
TTAGTAATCAAGTCAAGTCT+AGG 0.545141 5.3:-10337479 None:intergenic
AATTCAGCACCATTGATCAA+TGG 0.545343 5.3:+10339801 MS.gene047683:CDS
ACCAGTCATAATTGTCAGCA+GGG 0.547383 5.3:-10339280 None:intergenic
TCTGCGTTGTGGCAAAGCAT+TGG 0.552680 5.3:+10340854 MS.gene047683:CDS
CCCCTGCTGACAATTATGAC+TGG 0.556480 5.3:+10339279 MS.gene047683:CDS
AGTAATCAGCAAGTTTAAGA+GGG 0.556655 5.3:-10339872 None:intergenic
ACAATGTAATAGTCCTTTGG+AGG 0.562881 5.3:-10339161 None:intergenic
TAGAAGTACCTATAATCTAG+TGG 0.562923 5.3:+10340219 MS.gene047683:CDS
TGAATATCACTGAAGACTCC+AGG 0.564427 5.3:-10339903 None:intergenic
CATGTTCCGGATCTCAAATG+TGG 0.568521 5.3:+10338992 MS.gene047683:CDS
CCATAATGGAATGACCCTTG+TGG 0.569679 5.3:-10339744 None:intergenic
GATTCACTTGATGTACATGT+TGG 0.569946 5.3:+10339104 MS.gene047683:CDS
CATTGGATAACCAAGGTATG+TGG 0.570010 5.3:+10340721 MS.gene047683:CDS
TACCTTAAATCAACCTCCAA+AGG 0.573055 5.3:+10339148 MS.gene047683:CDS
ACCGATGTAGCTATATGTGC+AGG 0.576247 5.3:-10339945 None:intergenic
CTGTGCAGTGTGTCTAGTCA+AGG 0.577408 5.3:-10340245 None:intergenic
CTTGACTAGACACACTGCAC+AGG 0.578929 5.3:+10340246 MS.gene047683:CDS
TATTGAGTACTCACTTGTTG+AGG 0.585912 5.3:-10337352 None:intergenic
TACTTACAAGTTTCAAACCA+AGG 0.587094 5.3:+10338129 MS.gene047683:CDS
ATCAAGTCAAGTCTAGGACC+AGG 0.590567 5.3:-10337473 None:intergenic
ATCTGACAGCAAATGCTGCT+AGG 0.593901 5.3:+10339715 MS.gene047683:CDS
ACCTTGGTTACCAGTGAAGG+TGG 0.610392 5.3:-10338860 None:intergenic
AAAATGCATAAAGCTGCTGG+AGG 0.614281 5.3:+10338187 MS.gene047683:CDS
AGGCAAGGGTCCTGATGCTG+AGG 0.616933 5.3:-10339252 None:intergenic
GCTGCTAGGCCTAACCCACA+AGG 0.622148 5.3:+10339729 MS.gene047683:CDS
AGTTTGAGTAAATCTTGTTG+AGG 0.622304 5.3:-10339186 None:intergenic
CTAGGAATGGCATTAAACAA+AGG 0.626838 5.3:+10338044 MS.gene047683:intron
ATGTTCCGGATCTCAAATGT+GGG 0.629630 5.3:+10338993 MS.gene047683:CDS
TGGACAACAGTTGTATATGA+GGG 0.631389 5.3:+10340779 MS.gene047683:CDS
TCCACCTTCACTGGTAACCA+AGG 0.636980 5.3:+10338859 MS.gene047683:CDS
AGACACTATTAACTGCATAA+CGG 0.638349 5.3:-10339830 None:intergenic
TTGGTACAAGGCCAGCCACA+AGG 0.639654 5.3:+10338297 MS.gene047683:CDS
TCCTGCACATATAGCTACAT+CGG 0.643778 5.3:+10339944 MS.gene047683:CDS
AAATGCATAAAGCTGCTGGA+GGG 0.654387 5.3:+10338188 MS.gene047683:CDS
CAGTCATAATTGTCAGCAGG+GGG 0.660164 5.3:-10339278 None:intergenic
CTGCTAGGCCTAACCCACAA+GGG 0.669842 5.3:+10339730 MS.gene047683:CDS
GTAATCAGCAAGTTTAAGAG+GGG 0.686146 5.3:-10339871 None:intergenic
CCAGTCATAATTGTCAGCAG+GGG 0.699494 5.3:-10339279 None:intergenic
ATGATTATAAGTTCTACACA+TGG 0.702965 5.3:+10337293 MS.gene047683:CDS
ACTTGTTGAGGAGTACCAAG+AGG 0.729297 5.3:-10337340 None:intergenic
TTGGTGTCATTGGATAACCA+AGG 0.736898 5.3:+10340714 MS.gene047683:CDS
GTGGAATGCACAACGCACTG+CGG 0.747881 5.3:+10340803 MS.gene047683:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATGATATTTAATATA+GGG - chr5.3:10338357-10338376 None:intergenic 10.0%
!! TGTTACATATTATAAAAAAA+AGG + chr5.3:10338410-10338429 MS.gene047683:intron 10.0%
!!! ATTTTTATATGATTAGAATT+TGG + chr5.3:10340408-10340427 MS.gene047683:intron 10.0%
!! AAAACATGATTTAAAAATGT+TGG + chr5.3:10338014-10338033 MS.gene047683:intron 15.0%
!! AAACATGATTTAAAAATGTT+GGG + chr5.3:10338015-10338034 MS.gene047683:intron 15.0%
!! ATAAAAACCAAATAAACATT+GGG - chr5.3:10340632-10340651 None:intergenic 15.0%
!! GTATGAATGATATTTAATAT+AGG - chr5.3:10338358-10338377 None:intergenic 15.0%
!! TATAAAAACCAAATAAACAT+TGG - chr5.3:10340633-10340652 None:intergenic 15.0%
!!! ATATTTAAGTTTATTTCAAC+AGG + chr5.3:10340354-10340373 MS.gene047683:intron 15.0%
!!! ATCATCAATGTTTTAAAAAT+CGG - chr5.3:10337917-10337936 None:intergenic 15.0%
!!! CATTTTAAAAAAATCATCTA+TGG + chr5.3:10338509-10338528 MS.gene047683:intron 15.0%
!!! TTAAAATGTGATTTTGATTA+TGG - chr5.3:10338497-10338516 None:intergenic 15.0%
!! TTAAACAAAGGAAAAATTCA+TGG + chr5.3:10338056-10338075 MS.gene047683:CDS 20.0%
!! TTACATTTATTATGTCTTGT+AGG + chr5.3:10338762-10338781 MS.gene047683:intron 20.0%
!!! AAATCTAATCTCATATTTTG+GGG - chr5.3:10338720-10338739 None:intergenic 20.0%
!!! ATTTGCTTTGATTTGTTTAT+AGG + chr5.3:10339654-10339673 MS.gene047683:intron 20.0%
!!! CAAATCTAATCTCATATTTT+GGG - chr5.3:10338721-10338740 None:intergenic 20.0%
!!! TATCTGTTAAAATTTTAGCA+TGG - chr5.3:10338902-10338921 None:intergenic 20.0%
!!! TGTATTTAGTTTTCAAGTTA+TGG + chr5.3:10339350-10339369 MS.gene047683:intron 20.0%
!!! TTATTACTTTATTTGTCGTA+AGG + chr5.3:10337828-10337847 MS.gene047683:intron 20.0%
!!! TTGAAGGTTATTTTGATTAA+TGG + chr5.3:10337443-10337462 MS.gene047683:intron 20.0%
!!! TTGTAAGTATAATTTGAGTT+TGG - chr5.3:10338118-10338137 None:intergenic 20.0%
!!! TTTAAAACACAAAATTACCT+TGG - chr5.3:10338879-10338898 None:intergenic 20.0%
!!! TTTAATATAGGGTGTTTATA+AGG - chr5.3:10338346-10338365 None:intergenic 20.0%
! AAAAATGTTGGGAATAAACT+AGG + chr5.3:10338026-10338045 MS.gene047683:intron 25.0%
! AAAGTAAATTGAAGTGCAAA+AGG - chr5.3:10337788-10337807 None:intergenic 25.0%
! AAATCAAAGCAAATTCACAA+AGG - chr5.3:10339648-10339667 None:intergenic 25.0%
! AAATGAAATATTCTTGCAGA+TGG + chr5.3:10339691-10339710 MS.gene047683:intron 25.0%
! AACATTGATGTATACACAAA+GGG - chr5.3:10337634-10337653 None:intergenic 25.0%
! AATAGGTGGTTAAATATGTT+TGG + chr5.3:10339503-10339522 MS.gene047683:intron 25.0%
! AATGTTTAACACAGTGAAAT+AGG + chr5.3:10339486-10339505 MS.gene047683:intron 25.0%
! ATGATTATAAGTTCTACACA+TGG + chr5.3:10337293-10337312 MS.gene047683:CDS 25.0%
! TAAATATCATTCATACTGCT+AGG + chr5.3:10338362-10338381 MS.gene047683:intron 25.0%
! TAAATGTAAGTTAACATGAC+AGG - chr5.3:10338751-10338770 None:intergenic 25.0%
! TCACAGAAATATTATTCAGA+AGG - chr5.3:10340298-10340317 None:intergenic 25.0%
! TCCAACCAAAAGAATATATT+TGG + chr5.3:10339776-10339795 MS.gene047683:CDS 25.0%
! TGGCAATTATGTTCAATATA+TGG - chr5.3:10339557-10339576 None:intergenic 25.0%
! TGGTTTAATTAGTTCAAAAG+TGG - chr5.3:10337859-10337878 None:intergenic 25.0%
! TTAGATTTAGGAAAATCTCT+TGG + chr5.3:10338799-10338818 MS.gene047683:CDS 25.0%
! TTGAGACAATCTTTAGATTT+AGG + chr5.3:10338787-10338806 MS.gene047683:CDS 25.0%
! TTGGAATTATCTTTCCATAA+TGG - chr5.3:10339761-10339780 None:intergenic 25.0%
!! ATTGGCCAAATATATTCTTT+TGG - chr5.3:10339784-10339803 None:intergenic 25.0%
!! CAAGTGAATCATATAGATTT+TGG - chr5.3:10339094-10339113 None:intergenic 25.0%
!! GCAAATCTAATCTCATATTT+TGG - chr5.3:10338722-10338741 None:intergenic 25.0%
!! TAAGTATAATTTGAGTTTGG+AGG - chr5.3:10338115-10338134 None:intergenic 25.0%
!! TTTTATATGCTGAATTGATG+TGG + chr5.3:10340646-10340665 MS.gene047683:intron 25.0%
!!! AAACAAACCTTTAAAATTGG+CGG + chr5.3:10338694-10338713 MS.gene047683:intron 25.0%
!!! AGCAAACAAACCTTTAAAAT+TGG + chr5.3:10338691-10338710 MS.gene047683:intron 25.0%
!!! GCAATTTAGAATTTTCCTAA+TGG + chr5.3:10340130-10340149 MS.gene047683:intron 25.0%
!!! GTACTCAATATGCTTTTTAT+TGG + chr5.3:10337365-10337384 MS.gene047683:intron 25.0%
!!! TCAATCAACTTTAGAATTCA+GGG + chr5.3:10339026-10339045 MS.gene047683:CDS 25.0%
!!! TTTTTGTGGTTACTTTTTGA+AGG + chr5.3:10337427-10337446 MS.gene047683:intron 25.0%
AAAACAAAGTGCAAAACTGT+TGG - chr5.3:10338958-10338977 None:intergenic 30.0%
AAGATATTGTCTTTCCCATA+TGG - chr5.3:10340760-10340779 None:intergenic 30.0%
AAGTAACCACAAAAAAAGTC+AGG - chr5.3:10337422-10337441 None:intergenic 30.0%
AAGTAATCAGCAAGTTTAAG+AGG - chr5.3:10339876-10339895 None:intergenic 30.0%
AATGAACTTGACCATTGATA+AGG - chr5.3:10338840-10338859 None:intergenic 30.0%
AGACACTATTAACTGCATAA+CGG - chr5.3:10339833-10339852 None:intergenic 30.0%
AGCATTATCAAAACACCATT+AGG - chr5.3:10340148-10340167 None:intergenic 30.0%
AGTAATCAGCAAGTTTAAGA+GGG - chr5.3:10339875-10339894 None:intergenic 30.0%
AGTTTGAGTAAATCTTGTTG+AGG - chr5.3:10339189-10339208 None:intergenic 30.0%
ATAAGTTCCAATTTGATCCT+TGG - chr5.3:10338149-10338168 None:intergenic 30.0%
ATATGGGAAAGACAATATCT+TGG + chr5.3:10340759-10340778 MS.gene047683:CDS 30.0%
ATTAGGAATGTCGTATTCAT+TGG - chr5.3:10340829-10340848 None:intergenic 30.0%
CAACATTGATGTATACACAA+AGG - chr5.3:10337635-10337654 None:intergenic 30.0%
CTGGTTAACACAATTCAAAT+AGG - chr5.3:10339580-10339599 None:intergenic 30.0%
GTGAAAATAACATGCAATCT+TGG + chr5.3:10340015-10340034 MS.gene047683:CDS 30.0%
GTGGTTACATATGAATGTAT+AGG + chr5.3:10340665-10340684 MS.gene047683:intron 30.0%
GTTAACACAATTCAAATAGG+TGG - chr5.3:10339577-10339596 None:intergenic 30.0%
TACTTACAAGTTTCAAACCA+AGG + chr5.3:10338129-10338148 MS.gene047683:CDS 30.0%
TATAGGTATATCCAAACTCT+TGG + chr5.3:10340682-10340701 MS.gene047683:intron 30.0%
TCGCAAAAGTTGTCAAAATT+AGG + chr5.3:10339604-10339623 MS.gene047683:intron 30.0%
TTAGTAATCAAGTCAAGTCT+AGG - chr5.3:10337482-10337501 None:intergenic 30.0%
TTATGTGCCCAATGTTTATT+TGG + chr5.3:10340622-10340641 MS.gene047683:intron 30.0%
TTCTCTTCATGATTTCATTG+AGG + chr5.3:10339977-10339996 MS.gene047683:CDS 30.0%
TTTCAAACCAAGGATCAAAT+TGG + chr5.3:10338139-10338158 MS.gene047683:CDS 30.0%
! ATATAGGGTGTTTATAAGGA+AGG - chr5.3:10338342-10338361 None:intergenic 30.0%
! GCCAAATATATTCTTTTGGT+TGG - chr5.3:10339780-10339799 None:intergenic 30.0%
! TAATTTGAGTTTGGAGGAAT+AGG - chr5.3:10338109-10338128 None:intergenic 30.0%
!! ACCTTGATGGTTATGATTTT+TGG + chr5.3:10340039-10340058 MS.gene047683:CDS 30.0%
!! CCTTGATGGTTATGATTTTT+GGG + chr5.3:10340040-10340059 MS.gene047683:CDS 30.0%
!! CTCAATCAACTTTAGAATTC+AGG + chr5.3:10339025-10339044 MS.gene047683:CDS 30.0%
!! CTGAATTCTAAAGTTGATTG+AGG - chr5.3:10339027-10339046 None:intergenic 30.0%
!! TAGAAGTACCTATAATCTAG+TGG + chr5.3:10340219-10340238 MS.gene047683:CDS 30.0%
!!! AGTTTTGCACTTTGTTTTTC+AGG + chr5.3:10338960-10338979 MS.gene047683:intron 30.0%
!!! GCTTTATGCATTTTAGTTGA+TGG - chr5.3:10338181-10338200 None:intergenic 30.0%
!!! TGTTCTGTTGTTTTAGTTGA+TGG + chr5.3:10340100-10340119 MS.gene047683:intron 30.0%
AAAAACTGAACCGAGTTAGT+CGG + chr5.3:10337656-10337675 MS.gene047683:intron 35.0%
AAACTCTTGGACAGCAATAT+TGG + chr5.3:10340695-10340714 MS.gene047683:CDS 35.0%
AACAAACCAACATGACAAAC+TGG - chr5.3:10337707-10337726 None:intergenic 35.0%
AAGTGCAAAAGGAAAAACAG+TGG - chr5.3:10337777-10337796 None:intergenic 35.0%
AATATTGCTGTCCAAGAGTT+TGG - chr5.3:10340696-10340715 None:intergenic 35.0%
AATTAAACCATGACCTCTAG+AGG + chr5.3:10337869-10337888 MS.gene047683:intron 35.0%
AATTCAGCACCATTGATCAA+TGG + chr5.3:10339801-10339820 MS.gene047683:CDS 35.0%
ACAATGTAATAGTCCTTTGG+AGG - chr5.3:10339164-10339183 None:intergenic 35.0%
ACTAAAATGCATAAAGCTGC+TGG + chr5.3:10338184-10338203 MS.gene047683:CDS 35.0%
AGAAGAGTAAAATCTCCATC+AGG - chr5.3:10338268-10338287 None:intergenic 35.0%
AGGAAAAATTCATGGCAAGA+TGG + chr5.3:10338064-10338083 MS.gene047683:CDS 35.0%
ATGAGCCATTTCTACTAACT+TGG + chr5.3:10337537-10337556 MS.gene047683:CDS 35.0%
ATTCAGACTACTCCATCTAA+TGG + chr5.3:10339921-10339940 MS.gene047683:CDS 35.0%
ATTGATTGCAGTTATGGTTC+TGG + chr5.3:10340178-10340197 MS.gene047683:intron 35.0%
CCACAGACACTTAAGATTAA+AGG + chr5.3:10340496-10340515 MS.gene047683:intron 35.0%
CCCAAAAATCATAACCATCA+AGG - chr5.3:10340043-10340062 None:intergenic 35.0%
CCTTTAATCTTAAGTGTCTG+TGG - chr5.3:10340499-10340518 None:intergenic 35.0%
CTAAAACTAGTCGAAGTTGA+AGG + chr5.3:10339056-10339075 MS.gene047683:CDS 35.0%
CTAGGAATGGCATTAAACAA+AGG + chr5.3:10338044-10338063 MS.gene047683:intron 35.0%
GATTCACTTGATGTACATGT+TGG + chr5.3:10339104-10339123 MS.gene047683:CDS 35.0%
GCAACAATGTAATAGTCCTT+TGG - chr5.3:10339167-10339186 None:intergenic 35.0%
GCTACAATTGATTGCAGTTA+TGG + chr5.3:10340172-10340191 MS.gene047683:intron 35.0%
GGTCTTAGTAGTTTGATCTT+TGG + chr5.3:10337890-10337909 MS.gene047683:intron 35.0%
GTAAAATCTCCATCAGGATT+TGG - chr5.3:10338262-10338281 None:intergenic 35.0%
GTAATCAGCAAGTTTAAGAG+GGG - chr5.3:10339874-10339893 None:intergenic 35.0%
GTTTAACACAGTGAAATAGG+TGG + chr5.3:10339489-10339508 MS.gene047683:intron 35.0%
TACCTTAAATCAACCTCCAA+AGG + chr5.3:10339148-10339167 MS.gene047683:CDS 35.0%
TATGGAATTCTTTCTCCTCT+TGG + chr5.3:10337325-10337344 MS.gene047683:CDS 35.0%
TGGACAACAGTTGTATATGA+GGG + chr5.3:10340779-10340798 MS.gene047683:CDS 35.0%
TGTACATGTCTGACACATTT+CGG + chr5.3:10340521-10340540 MS.gene047683:intron 35.0%
TGTTGGGAATAAACTAGGAA+TGG + chr5.3:10338031-10338050 MS.gene047683:intron 35.0%
TTGATTAATGGTCAGTTTCC+TGG + chr5.3:10337455-10337474 MS.gene047683:CDS 35.0%
TTGGACAACAGTTGTATATG+AGG + chr5.3:10340778-10340797 MS.gene047683:CDS 35.0%
! ATAAACCCACATTTGAGATC+CGG - chr5.3:10339001-10339020 None:intergenic 35.0%
! ATTGATCAATGGTGCTGAAT+TGG - chr5.3:10339802-10339821 None:intergenic 35.0%
! GAAATATGTCACTTACCTTG+TGG - chr5.3:10338315-10338334 None:intergenic 35.0%
! GATTTGTTCGCATTACTTGT+TGG + chr5.3:10337973-10337992 MS.gene047683:intron 35.0%
! GGAGATTTTACTCTTCTCAT+TGG + chr5.3:10338271-10338290 MS.gene047683:CDS 35.0%
! TAAAGTTCTTCGTCGCATTT+TGG + chr5.3:10339396-10339415 MS.gene047683:intron 35.0%
! TATTGAGTACTCACTTGTTG+AGG - chr5.3:10337355-10337374 None:intergenic 35.0%
! TTACTCTTCTCATTGGTGAT+TGG + chr5.3:10338278-10338297 MS.gene047683:CDS 35.0%
!! AAATCTCTTGGTTTTCCTGA+TGG + chr5.3:10338811-10338830 MS.gene047683:CDS 35.0%
!! AATCTCTTGGTTTTCCTGAT+GGG + chr5.3:10338812-10338831 MS.gene047683:CDS 35.0%
!!! ACTGATCCTGACTTTTTTTG+TGG + chr5.3:10337413-10337432 MS.gene047683:intron 35.0%
!!! GTTATGATTTTTGGGTCGTT+GGG + chr5.3:10340048-10340067 MS.gene047683:CDS 35.0%
AAAATGCATAAAGCTGCTGG+AGG + chr5.3:10338187-10338206 MS.gene047683:CDS 40.0%
AAATGCATAAAGCTGCTGGA+GGG + chr5.3:10338188-10338207 MS.gene047683:CDS 40.0%
AACAGTTGTATATGAGGGTG+TGG + chr5.3:10340784-10340803 MS.gene047683:CDS 40.0%
ACCAGTCATAATTGTCAGCA+GGG - chr5.3:10339283-10339302 None:intergenic 40.0%
ATACACACCTGTTTACGAAC+AGG - chr5.3:10339425-10339444 None:intergenic 40.0%
ATATGTGCAGGACCATTAGA+TGG - chr5.3:10339936-10339955 None:intergenic 40.0%
ATCCCTTATCCAAATCCTGA+TGG + chr5.3:10338250-10338269 MS.gene047683:CDS 40.0%
ATCTCAAGTTCCACATACCT+TGG - chr5.3:10340734-10340753 None:intergenic 40.0%
ATGTTCCGGATCTCAAATGT+GGG + chr5.3:10338993-10339012 MS.gene047683:CDS 40.0%
ATTACCTTGGTTACCAGTGA+AGG - chr5.3:10338866-10338885 None:intergenic 40.0%
CAAACTACTAAGACCTCTAG+AGG - chr5.3:10337885-10337904 None:intergenic 40.0%
CAACCGGTTGAATTGGAAAT+CGG + chr5.3:10337681-10337700 MS.gene047683:intron 40.0%
CAGGAAAAACGTACATGTTC+CGG + chr5.3:10338979-10338998 MS.gene047683:intron 40.0%
CATTGGATAACCAAGGTATG+TGG + chr5.3:10340721-10340740 MS.gene047683:CDS 40.0%
CCTCACCAAGTTAGTAGAAA+TGG - chr5.3:10337545-10337564 None:intergenic 40.0%
CTCCATCAGGATTTGGATAA+GGG - chr5.3:10338255-10338274 None:intergenic 40.0%
GAACTTGAGATCAGCCATAT+GGG + chr5.3:10340743-10340762 MS.gene047683:CDS 40.0%
GCTGATTACTTCAACATTCC+TGG + chr5.3:10339885-10339904 MS.gene047683:CDS 40.0%
TCAGGATTTGGATAAGGGAT+TGG - chr5.3:10338250-10338269 None:intergenic 40.0%
TCCTGCACATATAGCTACAT+CGG + chr5.3:10339944-10339963 MS.gene047683:CDS 40.0%
TCTCCATCAGGATTTGGATA+AGG - chr5.3:10338256-10338275 None:intergenic 40.0%
TGAAGCAAGCTAGAACTTAC+AGG + chr5.3:10339306-10339325 MS.gene047683:CDS 40.0%
TGAATATCACTGAAGACTCC+AGG - chr5.3:10339906-10339925 None:intergenic 40.0%
TTCTACTAGCATCTGTCCAT+TGG - chr5.3:10340204-10340223 None:intergenic 40.0%
! CAAGGCATCCACTAGATTAT+AGG - chr5.3:10340230-10340249 None:intergenic 40.0%
! CATAATGGAATGACCCTTGT+GGG - chr5.3:10339746-10339765 None:intergenic 40.0%
! CCATTTCTACTAACTTGGTG+AGG + chr5.3:10337542-10337561 MS.gene047683:intron 40.0%
! GTCCTTTGGAGGTTGATTTA+AGG - chr5.3:10339153-10339172 None:intergenic 40.0%
! TACACATGGACTGTGACTTA+TGG + chr5.3:10337307-10337326 MS.gene047683:CDS 40.0%
! TCATGGCAAGATGGAGTTTT+GGG + chr5.3:10338073-10338092 MS.gene047683:CDS 40.0%
! TCTCATTGGTGATTGGTACA+AGG + chr5.3:10338285-10338304 MS.gene047683:CDS 40.0%
! TGACAACTTTTGCGACTTTC+TGG - chr5.3:10339599-10339618 None:intergenic 40.0%
! TTCATGGCAAGATGGAGTTT+TGG + chr5.3:10338072-10338091 MS.gene047683:CDS 40.0%
!! AGGGGTATCAGGGTTAATAT+AGG - chr5.3:10339856-10339875 None:intergenic 40.0%
!! CAAGTTTAAGAGGGGTATCA+GGG - chr5.3:10339866-10339885 None:intergenic 40.0%
!! CGCATTACTTGTTGGTTTGT+GGG + chr5.3:10337981-10338000 MS.gene047683:intron 40.0%
!! GACAGCAATATTGGTGTCAT+TGG + chr5.3:10340704-10340723 MS.gene047683:CDS 40.0%
!! TCGCATTACTTGTTGGTTTG+TGG + chr5.3:10337980-10337999 MS.gene047683:intron 40.0%
!! TTGGTGTCATTGGATAACCA+AGG + chr5.3:10340714-10340733 MS.gene047683:CDS 40.0%
!!! GGTTATGATTTTTGGGTCGT+TGG + chr5.3:10340047-10340066 MS.gene047683:CDS 40.0%
AAAAACAGTGGAACCAGCCA+CGG - chr5.3:10337765-10337784 None:intergenic 45.0%
AATCGGCCAGTTTGTCATGT+TGG + chr5.3:10337698-10337717 MS.gene047683:intron 45.0%
ACCGATGTAGCTATATGTGC+AGG - chr5.3:10339948-10339967 None:intergenic 45.0%
ATCTGACAGCAAATGCTGCT+AGG + chr5.3:10339715-10339734 MS.gene047683:CDS 45.0%
ATGCAATCTTGGCACCTTGA+TGG + chr5.3:10340026-10340045 MS.gene047683:CDS 45.0%
CAACCAGACTGCGATACAAT+CGG - chr5.3:10337730-10337749 None:intergenic 45.0%
CAAGTTCATTCCACCTTCAC+TGG + chr5.3:10338850-10338869 MS.gene047683:CDS 45.0%
CAGTCATAATTGTCAGCAGG+GGG - chr5.3:10339281-10339300 None:intergenic 45.0%
CATGTTCCGGATCTCAAATG+TGG + chr5.3:10338992-10339011 MS.gene047683:CDS 45.0%
CCACAAGGGTCATTCCATTA+TGG + chr5.3:10339744-10339763 MS.gene047683:CDS 45.0%
CCAGTCATAATTGTCAGCAG+GGG - chr5.3:10339282-10339301 None:intergenic 45.0%
CCTAATAATGCTCTGCGTTG+TGG + chr5.3:10340843-10340862 MS.gene047683:CDS 45.0%
CGGAGCTTTCCATTGATCAA+TGG - chr5.3:10339813-10339832 None:intergenic 45.0%
GACCAGTCATAATTGTCAGC+AGG - chr5.3:10339284-10339303 None:intergenic 45.0%
GGAACTTGAGATCAGCCATA+TGG + chr5.3:10340742-10340761 MS.gene047683:CDS 45.0%
TTGGTCTCCTGTTCGTAAAC+AGG + chr5.3:10339415-10339434 MS.gene047683:intron 45.0%
! ACTAAGACCTCTAGAGGTCA+TGG - chr5.3:10337879-10337898 None:intergenic 45.0%
! ATCAAGTCAAGTCTAGGACC+AGG - chr5.3:10337476-10337495 None:intergenic 45.0%
! CCACAACGCAGAGCATTATT+AGG - chr5.3:10340846-10340865 None:intergenic 45.0%
! CCATAATGGAATGACCCTTG+TGG - chr5.3:10339747-10339766 None:intergenic 45.0%
! TATGTCACTTACCTTGTGGC+TGG - chr5.3:10338311-10338330 None:intergenic 45.0%
! TGGCCGATTTCCAATTCAAC+CGG - chr5.3:10337687-10337706 None:intergenic 45.0%
!! ACTTGTTGAGGAGTACCAAG+AGG - chr5.3:10337343-10337362 None:intergenic 45.0%
!! GCAAGTTTAAGAGGGGTATC+AGG - chr5.3:10339867-10339886 None:intergenic 45.0%
!! TTTGGGGCCGCCAATTTTAA+AGG - chr5.3:10338704-10338723 None:intergenic 45.0%
AACTCTCGTTCCTCAGCATC+AGG + chr5.3:10339242-10339261 MS.gene047683:CDS 50.0%
ACCGGTTGAACCGACTAACT+CGG - chr5.3:10337669-10337688 None:intergenic 50.0%
ACCTTGGTTACCAGTGAAGG+TGG - chr5.3:10338863-10338882 None:intergenic 50.0%
ACGTGTCAGTGTTGTGTGCA+TGG + chr5.3:10340563-10340582 MS.gene047683:intron 50.0%
CATAAAGCTGCTGGAGGGTT+TGG + chr5.3:10338193-10338212 MS.gene047683:CDS 50.0%
CCATTGATAAGGAGCCCATC+AGG - chr5.3:10338829-10338848 None:intergenic 50.0%
CCCCTGCTGACAATTATGAC+TGG + chr5.3:10339279-10339298 MS.gene047683:CDS 50.0%
CTGTGCAGTGTGTCTAGTCA+AGG - chr5.3:10340248-10340267 None:intergenic 50.0%
CTTGACTAGACACACTGCAC+AGG + chr5.3:10340246-10340265 MS.gene047683:CDS 50.0%
GGTTGAACTGGATTGAACCG+TGG + chr5.3:10337745-10337764 MS.gene047683:intron 50.0%
GTATCGCAGTCTGGTTGAAC+TGG + chr5.3:10337733-10337752 MS.gene047683:intron 50.0%
GTTCCGATTGTATCGCAGTC+TGG + chr5.3:10337724-10337743 MS.gene047683:intron 50.0%
TCCACCTTCACTGGTAACCA+AGG + chr5.3:10338859-10338878 MS.gene047683:CDS 50.0%
TCTGCGTTGTGGCAAAGCAT+TGG + chr5.3:10340854-10340873 MS.gene047683:CDS 50.0%
TGGAATGACCCTTGTGGGTT+AGG - chr5.3:10339741-10339760 None:intergenic 50.0%
! ACCGAGTTAGTCGGTTCAAC+CGG + chr5.3:10337665-10337684 MS.gene047683:intron 50.0%
! CTGCGTTGTGGCAAAGCATT+GGG + chr5.3:10340855-10340874 MS.gene047683:CDS 50.0%
! GTCGGTTCAACCGGTTGAAT+TGG + chr5.3:10337674-10337693 MS.gene047683:intron 50.0%
!! CCTGATGGGCTCCTTATCAA+TGG + chr5.3:10338826-10338845 MS.gene047683:CDS 50.0%
!! GCAGTTATGGTTCTGGCCAA+TGG + chr5.3:10340185-10340204 MS.gene047683:intron 50.0%
AAAGCTGCTGGAGGGTTTGG+AGG + chr5.3:10338196-10338215 MS.gene047683:CDS 55.0%
AACACTGACACGTCGACGCT+AGG - chr5.3:10340556-10340575 None:intergenic 55.0%
CTGCTAGGCCTAACCCACAA+GGG + chr5.3:10339730-10339749 MS.gene047683:CDS 55.0%
GAACTGGATTGAACCGTGGC+TGG + chr5.3:10337749-10337768 MS.gene047683:intron 55.0%
GTGGAATGCACAACGCACTG+CGG + chr5.3:10340803-10340822 MS.gene047683:CDS 55.0%
TAATTGTCAGCAGGGGGAGC+AGG - chr5.3:10339275-10339294 None:intergenic 55.0%
TTGGTACAAGGCCAGCCACA+AGG + chr5.3:10338297-10338316 MS.gene047683:CDS 55.0%
AGGCAAGGGTCCTGATGCTG+AGG - chr5.3:10339255-10339274 None:intergenic 60.0%
GACACGTCGACGCTAGGTGT+CGG - chr5.3:10340550-10340569 None:intergenic 60.0%
GCTGCTAGGCCTAACCCACA+AGG + chr5.3:10339729-10339748 MS.gene047683:CDS 60.0%
TCAGCAGGGGGAGCAGGCAA+GGG - chr5.3:10339269-10339288 None:intergenic 65.0%
GTCAGCAGGGGGAGCAGGCA+AGG - chr5.3:10339270-10339289 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 10337211 10340890 10337211 ID=MS.gene047683
chr5.3 mRNA 10337211 10340890 10337211 ID=MS.gene047683.t1;Parent=MS.gene047683
chr5.3 exon 10337211 10337360 10337211 ID=MS.gene047683.t1.exon1;Parent=MS.gene047683.t1
chr5.3 CDS 10337211 10337360 10337211 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10337449 10337558 10337449 ID=MS.gene047683.t1.exon2;Parent=MS.gene047683.t1
chr5.3 CDS 10337449 10337558 10337449 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10338048 10338318 10338048 ID=MS.gene047683.t1.exon3;Parent=MS.gene047683.t1
chr5.3 CDS 10338048 10338318 10338048 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10338784 10338880 10338784 ID=MS.gene047683.t1.exon4;Parent=MS.gene047683.t1
chr5.3 CDS 10338784 10338880 10338784 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10338982 10339327 10338982 ID=MS.gene047683.t1.exon5;Parent=MS.gene047683.t1
chr5.3 CDS 10338982 10339327 10338982 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10339710 10340069 10339710 ID=MS.gene047683.t1.exon6;Parent=MS.gene047683.t1
chr5.3 CDS 10339710 10340069 10339710 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10340189 10340267 10340189 ID=MS.gene047683.t1.exon7;Parent=MS.gene047683.t1
chr5.3 CDS 10340189 10340267 10340189 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
chr5.3 exon 10340687 10340890 10340687 ID=MS.gene047683.t1.exon8;Parent=MS.gene047683.t1
chr5.3 CDS 10340687 10340890 10340687 ID=cds.MS.gene047683.t1;Parent=MS.gene047683.t1
Gene Sequence

>MS.gene047683

ATGGGAAGCAGAAGCACTAGTGTGCTATCTCTACTATGTCTTGTTCTTGCATTAGTAAGTGTGTCTTTAGTGCAAGCAGAAGATGATTATAAGTTCTACACATGGACTGTGACTTATGGAATTCTTTCTCCTCTTGGTACTCCTCAACAAGTGAGTACTCAATATGCTTTTTATTGGATCTAATAACTTTTTGTTAGAAAAAACTGATCCTGACTTTTTTTGTGGTTACTTTTTGAAGGTTATTTTGATTAATGGTCAGTTTCCTGGTCCTAGACTTGACTTGATTACTAATAACAATGTGATTCTCAATCTTATCAACAAGCTAGATGAGCCATTTCTACTAACTTGGTGAGGTTTTGTTTATGTTTTTATCTTCTTCTTGCTTGATTCAAGTTCTTTGCTTTATGATCTGCATTGAGTCCCTTTGTGTATACATCAATGTTGTAAAAACTGAACCGAGTTAGTCGGTTCAACCGGTTGAATTGGAAATCGGCCAGTTTGTCATGTTGGTTTGTTCCGATTGTATCGCAGTCTGGTTGAACTGGATTGAACCGTGGCTGGTTCCACTGTTTTTCCTTTTGCACTTCAATTTACTTTTGTAACACTTTTTTTACTGTTTATTACTTTATTTGTCGTAAGGTTCAACCACTTTTGAACTAATTAAACCATGACCTCTAGAGGTCTTAGTAGTTTGATCTTTGGTCCGATTTTTAAAACATTGATGATATGTTGTAAACTTGTGTTTTCTTTTGAATATTTTTCGATTTGTTCGCATTACTTGTTGGTTTGTGGGATTTTCTGCAAAAACATGATTTAAAAATGTTGGGAATAAACTAGGAATGGCATTAAACAAAGGAAAAATTCATGGCAAGATGGAGTTTTGGGAACAAACTGTCCTATTCCTCCAAACTCAAATTATACTTACAAGTTTCAAACCAAGGATCAAATTGGAACTTATTCTTATTTTCCATCAACTAAAATGCATAAAGCTGCTGGAGGGTTTGGAGGACTCAATGTTTATCGTAGATCTGTCATTCCAATCCCTTATCCAAATCCTGATGGAGATTTTACTCTTCTCATTGGTGATTGGTACAAGGCCAGCCACAAGGTAAGTGACATATTTCTTTTCCTTCCTTATAAACACCCTATATTAAATATCATTCATACTGCTAGGCTGTTTGTGAGAATTAAGATCAATTTGTTACATATTATAAAAAAAAGGATTTTGACATTAAAAATTTATGTATTATTAAGAAAAGTAAAAGCTGATTTATGTTTGTTTACCATAATCAAAATCACATTTTAAAAAAATCATCTATGGAAAATCATTTTCAAGAACTACTCAAAAGAGCTTCTCATTTGAGACATTTTTAGATTTTGTTAAAATTCTAATTTTTTTTTTTAAAGTAATAACTAACAGATAAAAACTTCTGATATATTTTTTAAAAACAAGTAATTTTTTTATAAAATTTTGTTTTGTAGCAAACAAACCTTTAAAATTGGCGGCCCCAAAATATGAGATTAGATTTGCTTGTTTCCTGTCATGTTAACTTACATTTATTATGTCTTGTAGGTATTGAGACAATCTTTAGATTTAGGAAAATCTCTTGGTTTTCCTGATGGGCTCCTTATCAATGGTCAAGTTCATTCCACCTTCACTGGTAACCAAGGTAATTTTGTGTTTTAAACCATGCTAAAATTTTAACAGATACTATACATTTTAACTTTGTAAAATTTGCTTTTACCAACAGTTTTGCACTTTGTTTTTCAGGAAAAACGTACATGTTCCGGATCTCAAATGTGGGTTTATCTACCTCAATCAACTTTAGAATTCAGGGTCATATGCTAAAACTAGTCGAAGTTGAAGGATCACATACTCTCCAAAATCTATATGATTCACTTGATGTACATGTTGGACAATCAGTTTCTGTGTTAGTTACCTTAAATCAACCTCCAAAGGACTATTACATTGTTGCCTCAACAAGATTTACTCAAACTGTTCTCAGCACAACTTCTGTGCTGCACTATTCAAACTCTCGTTCCTCAGCATCAGGACCCTTGCCTGCTCCCCCTGCTGACAATTATGACTGGTCTATGAAGCAAGCTAGAACTTACAGGTATTGAAGAAAGATTTAAATATGTATTTAGTTTTCAAGTTATGGTATTTTGCACTCTTTTTTCTCTCTAAAGTTCTTCGTCGCATTTTGGTCTCCTGTTCGTAAACAGGTGTGTATTTGAACAACTAAAATTTGACAACTTTTGCGACAACAATCTAAATGTTTAACACAGTGAAATAGGTGGTTAAATATGTTTGGTAGATGATTAATGTATATATCAACTTGACCATATATTGAACATAATTGCCACCTATTTGAATTGTGTTAACCAGAAAGTCGCAAAAGTTGTCAAAATTAGGTTCTTCGTAAAAGCAAAACCTTTGTGAATTTGCTTTGATTTGTTTATAGGTTTTAATCTGTTTGAAATGAAATATTCTTGCAGATGGAATCTGACAGCAAATGCTGCTAGGCCTAACCCACAAGGGTCATTCCATTATGGAAAGATAATTCCAACCAAAAGAATATATTTGGCCAATTCAGCACCATTGATCAATGGAAAGCTCCGTTATGCAGTTAATAGTGTCTCCTATATTAACCCTGATACCCCTCTTAAACTTGCTGATTACTTCAACATTCCTGGAGTCTTCAGTGATATTCAGACTACTCCATCTAATGGTCCTGCACATATAGCTACATCGGTGTTGCAAACTTCTCTTCATGATTTCATTGAGGTTGTGTTTCAAAACAGTGAAAATAACATGCAATCTTGGCACCTTGATGGTTATGATTTTTGGGTCGTTGGGTATGTTTGTTAGCTTCTTGATTTGAGTCTTGTTCTGTTGTTTTAGTTGATGGTGATGAAGCAATTTAGAATTTTCCTAATGGTGTTTTGATAATGCTCAATGCTACAATTGATTGCAGTTATGGTTCTGGCCAATGGACAGATGCTAGTAGAAGTACCTATAATCTAGTGGATGCCTTGACTAGACACACTGCACAGGTAATAAAACAAAACAAGTGTCGCATTCCTTCTGAATAATATTTCTGTGAGAAAATTTATGAAAACAACATATGATATGTCATAAGATATTTAAGTTTATTTCAACAGGTTTTCTAAAATAGTTTATGAAAACAGTTTGCATTTTTATATGATTAGAATTTGGCTGCATTATATTTAATTATAGAAATAACATATACACAAACACTTTGATAAGTTTTAAACTATGTACCACAGACACTTAAGATTAAAGGTGTGTACATGTCTGACACATTTCGGTGTCCGACACCTAGCGTCGACGTGTCAGTGTTGTGTGCATGGTCAATTCTGTGTATGTACTTCATAAGTCTTAATGCATTATGTGCCCAATGTTTATTTGGTTTTTATATGCTGAATTGATGTGGTTACATATGAATGTATAGGTATATCCAAACTCTTGGACAGCAATATTGGTGTCATTGGATAACCAAGGTATGTGGAACTTGAGATCAGCCATATGGGAAAGACAATATCTTGGACAACAGTTGTATATGAGGGTGTGGAATGCACAACGCACTGCGGCCAATGAATACGACATTCCTAATAATGCTCTGCGTTGTGGCAAAGCATTGGGACATCATCCTTAG
Protein sequence

>MS.gene047683.t1

MGSRSTSVLSLLCLVLALVSVSLVQAEDDYKFYTWTVTYGILSPLGTPQQVILINGQFPGPRLDLITNNNVILNLINKLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTYSYFPSTKMHKAAGGFGGLNVYRRSVIPIPYPNPDGDFTLLIGDWYKASHKVLRQSLDLGKSLGFPDGLLINGQVHSTFTGNQGKTYMFRISNVGLSTSINFRIQGHMLKLVEVEGSHTLQNLYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTQTVLSTTSVLHYSNSRSSASGPLPAPPADNYDWSMKQARTYRWNLTANAARPNPQGSFHYGKIIPTKRIYLANSAPLINGKLRYAVNSVSYINPDTPLKLADYFNIPGVFSDIQTTPSNGPAHIATSVLQTSLHDFIEVVFQNSENNMQSWHLDGYDFWVVGYGSGQWTDASRSTYNLVDALTRHTAQVYPNSWTAILVSLDNQGMWNLRSAIWERQYLGQQLYMRVWNAQRTAANEYDIPNNALRCGKALGHHP