Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048128.t1 | XP_013454961.1 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.00E+00 | 1431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048128.t1 | O04015 | 79.5 | 709 | 145 | 0 | 44 | 752 | 4 | 712 | 0.0e+00 | 1097.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048128.t1 | G8IJI0 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0e+00 | 1431.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048128 | MS.gene064542 | PPI |
| MS.gene048128 | MS.gene035805 | PPI |
| MS.gene048128 | MS.gene78111 | PPI |
| MS.gene048128 | MS.gene73119 | PPI |
| MS.gene048128 | MS.gene99360 | PPI |
| MS.gene048128 | MS.gene66800 | PPI |
| MS.gene048128 | MS.gene03802 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048128.t1 | MTR_4g020110 | 98.283 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0 | 1514 |
| MS.gene048128.t1 | MTR_4g020110 | 97.766 | 761 | 12 | 2 | 1 | 757 | 1 | 760 | 0.0 | 1508 |
| MS.gene048128.t1 | MTR_4g020110 | 98.100 | 737 | 11 | 2 | 1 | 737 | 1 | 734 | 0.0 | 1464 |
| MS.gene048128.t1 | MTR_4g020110 | 97.759 | 714 | 15 | 1 | 44 | 757 | 1 | 713 | 0.0 | 1421 |
| MS.gene048128.t1 | MTR_4g020110 | 98.487 | 661 | 9 | 1 | 1 | 661 | 1 | 660 | 0.0 | 1320 |
| MS.gene048128.t1 | MTR_7g063650 | 84.314 | 714 | 112 | 0 | 44 | 757 | 1 | 714 | 0.0 | 1226 |
| MS.gene048128.t1 | MTR_3g069080 | 75.983 | 712 | 171 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1093 |
| MS.gene048128.t1 | MTR_4g095062 | 57.426 | 101 | 38 | 3 | 606 | 704 | 233 | 330 | 1.27e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048128.t1 | AT3G55610 | 74.719 | 712 | 180 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1083 |
| MS.gene048128.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene048128.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene048128.t1 | AT2G39800 | 74.616 | 717 | 179 | 1 | 41 | 757 | 1 | 714 | 0.0 | 1066 |
| MS.gene048128.t1 | AT2G39800 | 74.756 | 614 | 155 | 0 | 144 | 757 | 1 | 614 | 0.0 | 920 |
| MS.gene048128.t1 | AT3G55610 | 73.269 | 621 | 166 | 0 | 41 | 661 | 1 | 621 | 0.0 | 919 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGCATAATCGTATTT+TGG | 0.184262 | 4.4:+81024034 | None:intergenic |
| GGGAATGGCTTATTACTTAA+AGG | 0.220041 | 4.4:-81022924 | MS.gene048128:CDS |
| TTCTTGCCTTCTCAGGCTTC+AGG | 0.229467 | 4.4:+81023947 | None:intergenic |
| GCTAATTACCATTGCATTGC+AGG | 0.236335 | 4.4:+81022329 | None:intergenic |
| CATCAAAGAGAAATTACTTT+TGG | 0.238637 | 4.4:-81025199 | MS.gene048128:CDS |
| TTTGGTGATGGTGGCAAATT+TGG | 0.260202 | 4.4:+81031924 | None:intergenic |
| ACAGTCAGTGGCAAACTTAT+TGG | 0.261768 | 4.4:-81022739 | MS.gene048128:CDS |
| TACGATTATGCTTGAAAATC+AGG | 0.302996 | 4.4:-81024028 | MS.gene048128:CDS |
| GGAGAAAATATCATGTCCTT+TGG | 0.320472 | 4.4:-81023213 | MS.gene048128:CDS |
| TCAAGGCTATGAAGTTATAT+TGG | 0.328978 | 4.4:-81026703 | MS.gene048128:CDS |
| CAGTCAGTGGCAAACTTATT+GGG | 0.332216 | 4.4:-81022738 | MS.gene048128:CDS |
| TTTAGCACGGCACTAGCTTT+TGG | 0.332476 | 4.4:+81021825 | None:intergenic |
| ACTTCAGGTGCTGTTGGTCT+TGG | 0.332977 | 4.4:-81026678 | MS.gene048128:CDS |
| GCTAGCTGATGAACTCGTTT+TGG | 0.333385 | 4.4:-81023234 | MS.gene048128:CDS |
| AGATGGCAAAGCAGATAGTT+AGG | 0.336883 | 4.4:-81022377 | MS.gene048128:CDS |
| ATATTTACCTTTAGTAGATC+TGG | 0.342433 | 4.4:+81022691 | None:intergenic |
| GTAAGACCGCATTTGATCTT+CGG | 0.344839 | 4.4:+81022889 | None:intergenic |
| GCTGTTTGTGCTGCTCATGC+TGG | 0.345250 | 4.4:-81025127 | MS.gene048128:CDS |
| CACTGCCTGCAGGATTCTTC+TGG | 0.349022 | 4.4:-81025373 | MS.gene048128:intron |
| TAAGACCGCATTTGATCTTC+GGG | 0.350517 | 4.4:+81022890 | None:intergenic |
| AGTTTGCCACTGACTGTATC+TGG | 0.350718 | 4.4:+81022745 | None:intergenic |
| GAAGTTATATTGGTGACTTC+AGG | 0.351606 | 4.4:-81026693 | MS.gene048128:CDS |
| CTCTTCAAAATCTGACCAAT+TGG | 0.353373 | 4.4:+81023718 | None:intergenic |
| TTAGTAAGGGGTACCTCAAT+AGG | 0.354075 | 4.4:+81031901 | None:intergenic |
| GTGCTTCAAGGGGAGAAAAT+AGG | 0.364668 | 4.4:-81024562 | MS.gene048128:CDS |
| GCCTTCCATGTTTATTTATG+TGG | 0.369341 | 4.4:+81021715 | None:intergenic |
| AAGACTTCGATACCGCAAAT+TGG | 0.377344 | 4.4:-81026649 | MS.gene048128:CDS |
| TCGCAGCACGTAACAGTTCC+AGG | 0.377443 | 4.4:-81024471 | MS.gene048128:CDS |
| GAGAAAATATCATGTCCTTT+GGG | 0.383223 | 4.4:-81023212 | MS.gene048128:CDS |
| ACCTGCTATTTGCCAATTTG+CGG | 0.383241 | 4.4:+81026637 | None:intergenic |
| TTCATAGAGATGCACATCTA+TGG | 0.384701 | 4.4:-81024531 | MS.gene048128:CDS |
| GATGGAGCACGCTTTGGACT+AGG | 0.385831 | 4.4:-81020493 | MS.gene048128:CDS |
| AAAGGTCAGCTTTAAGTTCA+AGG | 0.387629 | 4.4:+81025311 | None:intergenic |
| CTTGCAGGTGTTCAAATATA+TGG | 0.392654 | 4.4:-81021852 | MS.gene048128:intron |
| ATTTAAGTTCTTGCCTTCTC+AGG | 0.397732 | 4.4:+81023940 | None:intergenic |
| CATCACTTAATAAAACTAAA+AGG | 0.399701 | 4.4:+81025293 | None:intergenic |
| AAATACCTAGTTATAACAAC+AGG | 0.400007 | 4.4:+81025100 | None:intergenic |
| TCGACCTGATGCTCTTGTTC+AGG | 0.404694 | 4.4:-81023165 | MS.gene048128:intron |
| TTATTCCATTACCATTAGTA+AGG | 0.405027 | 4.4:+81031887 | None:intergenic |
| TGTGCGTGTGCTGGCAGATA+TGG | 0.405412 | 4.4:-81023746 | MS.gene048128:CDS |
| GTTGCTGATGCTGTGGCAGC+TGG | 0.405518 | 4.4:-81024000 | MS.gene048128:CDS |
| AACCTTCACGTTGGAGTTCA+AGG | 0.410020 | 4.4:+81022115 | None:intergenic |
| GGTTAAGCGTTTGATTGTTA+AGG | 0.411046 | 4.4:-81031791 | MS.gene048128:intron |
| TCTTGCCTTCTCAGGCTTCA+GGG | 0.415137 | 4.4:+81023948 | None:intergenic |
| TGTTGGGCAGAGTAGTCTTA+TGG | 0.415769 | 4.4:-81026076 | MS.gene048128:CDS |
| CTTAAAGAACTAAACCTTCA+AGG | 0.416020 | 4.4:-81026720 | MS.gene048128:CDS |
| TGCAAAGTCTGTGCGTGTGC+TGG | 0.419836 | 4.4:-81023755 | MS.gene048128:CDS |
| TCAACAAGAATCCCTGTTCT+TGG | 0.420756 | 4.4:-81022532 | MS.gene048128:CDS |
| CACTTGGAGGACCACTATAA+AGG | 0.426951 | 4.4:+81025263 | None:intergenic |
| TAACAGTTCCAGGAGACTTC+AGG | 0.432633 | 4.4:-81024461 | MS.gene048128:intron |
| ATATAACTTCATAGCCTTGA+AGG | 0.434655 | 4.4:+81026706 | None:intergenic |
| CAGTTTCAGTAATCAAGTTA+AGG | 0.435092 | 4.4:+81031857 | None:intergenic |
| AAGCCACAAGGTGACCTTGA+TGG | 0.435398 | 4.4:-81026114 | MS.gene048128:CDS |
| ATGTTTATTTATGTGGTCAA+TGG | 0.439253 | 4.4:+81021722 | None:intergenic |
| TCACAACTTCTAGTGAATGA+TGG | 0.439982 | 4.4:-81025916 | MS.gene048128:CDS |
| ACCATTGCATTGCAGGCTGC+AGG | 0.440216 | 4.4:+81022336 | None:intergenic |
| TAAGCTTGTTTCTCAAATCA+AGG | 0.441036 | 4.4:-81022557 | MS.gene048128:CDS |
| AGATTAGCACTGGGCAGACT+TGG | 0.441937 | 4.4:-81027078 | MS.gene048128:CDS |
| GTCGAGACTCAAATATAATC+AGG | 0.443464 | 4.4:+81023183 | None:intergenic |
| TGGGACAATGACAGTTTGGC+TGG | 0.444164 | 4.4:-81025343 | MS.gene048128:CDS |
| TTGTTGACAAAGGCTCTTGA+AGG | 0.450746 | 4.4:+81031814 | None:intergenic |
| AAGCCCTAGAATACCTCATA+TGG | 0.455473 | 4.4:+81025778 | None:intergenic |
| AGAAAGGAGGAAAATATTGC+TGG | 0.458916 | 4.4:-81024082 | MS.gene048128:CDS |
| TAACTTGATTACTGAAACTG+AGG | 0.463346 | 4.4:-81031854 | MS.gene048128:CDS |
| AACAATCCCTCGACTCCTAC+AGG | 0.466514 | 4.4:+81020337 | None:intergenic |
| TTACCAGCATGACCAAGAAC+AGG | 0.466579 | 4.4:+81022520 | None:intergenic |
| AACATTATACGAGTGCTTCA+AGG | 0.470573 | 4.4:-81024574 | MS.gene048128:CDS |
| GGAAGAGAGTGCGCATGAAA+TGG | 0.473708 | 4.4:-81024497 | MS.gene048128:CDS |
| TACTAGGAAGGCACCATATG+AGG | 0.477182 | 4.4:-81025791 | MS.gene048128:intron |
| ATCCCTGTTCTTGGTCATGC+TGG | 0.477939 | 4.4:-81022523 | MS.gene048128:intron |
| AATACCTGAACAAGAGCATC+AGG | 0.478922 | 4.4:+81023161 | None:intergenic |
| TTTGGAGACAAATCAAGATT+GGG | 0.481455 | 4.4:-81025181 | MS.gene048128:CDS |
| TTATATAATGCAGGATATTG+AGG | 0.481462 | 4.4:-81019983 | MS.gene048128:intron |
| GTACCCCTTACTAATGGTAA+TGG | 0.482989 | 4.4:-81031892 | MS.gene048128:CDS |
| TTTGAGTTTGGGTCACTTGG+AGG | 0.483545 | 4.4:+81025250 | None:intergenic |
| GACAAATCAAGATTGGGCAG+AGG | 0.488517 | 4.4:-81025175 | MS.gene048128:CDS |
| CATTCTTATCTCAAGTTGAC+AGG | 0.490759 | 4.4:-81021547 | MS.gene048128:intron |
| GCCACTGACTGTATCTGGTA+TGG | 0.493767 | 4.4:+81022750 | None:intergenic |
| ATGGAGCACGCTTTGGACTA+GGG | 0.494430 | 4.4:-81020492 | MS.gene048128:CDS |
| CAAGCTTATTACTGCCTCTA+GGG | 0.494703 | 4.4:+81022572 | None:intergenic |
| AAGGGGTACCTCAATAGGTT+TGG | 0.495921 | 4.4:+81031906 | None:intergenic |
| ACCGCAAATTGGCAAATAGC+AGG | 0.496549 | 4.4:-81026638 | MS.gene048128:intron |
| ATTGAGGTACCCCTTACTAA+TGG | 0.501029 | 4.4:-81031898 | MS.gene048128:CDS |
| ACATTATACGAGTGCTTCAA+GGG | 0.504792 | 4.4:-81024573 | MS.gene048128:CDS |
| CACAACTTCTAGTGAATGAT+GGG | 0.506906 | 4.4:-81025915 | MS.gene048128:CDS |
| CACCATCACCAAACCTATTG+AGG | 0.509868 | 4.4:-81031914 | MS.gene048128:CDS |
| TATATAATGCAGGATATTGA+GGG | 0.510276 | 4.4:-81019982 | MS.gene048128:intron |
| CTCAATAGGTTTGGTGATGG+TGG | 0.515987 | 4.4:+81031915 | None:intergenic |
| TTCAAGAGCCTTTGTCAACA+AGG | 0.516226 | 4.4:-81031812 | MS.gene048128:CDS |
| TTGGCAATTCGAAGTGGGAA+TGG | 0.517957 | 4.4:-81022939 | MS.gene048128:CDS |
| AAAATGATGCTGTTAGTACT+AGG | 0.518973 | 4.4:-81025807 | MS.gene048128:CDS |
| AAGTGATGGAAGATTAGCAC+TGG | 0.519612 | 4.4:-81027088 | MS.gene048128:CDS |
| TTGGTGACTTCAGGTGCTGT+TGG | 0.521178 | 4.4:-81026684 | MS.gene048128:CDS |
| AGGGATTGTTGACAAACAAA+TGG | 0.525711 | 4.4:-81020324 | MS.gene048128:intron |
| AAGGTCAGCTTTAAGTTCAA+GGG | 0.526790 | 4.4:+81025312 | None:intergenic |
| GAAAAGCATGTGCAGCTGTT+GGG | 0.530069 | 4.4:-81026092 | MS.gene048128:CDS |
| ACAAATCAAGATTGGGCAGA+GGG | 0.530530 | 4.4:-81025174 | MS.gene048128:CDS |
| TACCTCGTTATTAGAATCGA+AGG | 0.531369 | 4.4:-81025848 | MS.gene048128:CDS |
| CTTATTACTTAAAGGAGGAA+AGG | 0.531505 | 4.4:-81022916 | MS.gene048128:CDS |
| TAATTAATAGATAGCAGCAT+TGG | 0.535006 | 4.4:-81022958 | MS.gene048128:intron |
| GATGGCAAAGCAGATAGTTA+GGG | 0.536329 | 4.4:-81022376 | MS.gene048128:CDS |
| GCTGGCAGTGGCTGATGCAT+TGG | 0.538131 | 4.4:-81024064 | MS.gene048128:CDS |
| GTATGATACTATGTTTAGCC+AGG | 0.539999 | 4.4:-81026049 | MS.gene048128:intron |
| GCAGATATGGAAGAACCAAT+TGG | 0.540903 | 4.4:-81023733 | MS.gene048128:CDS |
| ACAAGCTTATTACTGCCTCT+AGG | 0.542070 | 4.4:+81022571 | None:intergenic |
| GGCTGATGTTGCTGATGCTG+TGG | 0.549604 | 4.4:-81024007 | MS.gene048128:CDS |
| ACTTGGAGCTCTATGTGAGC+AGG | 0.551750 | 4.4:-81027061 | MS.gene048128:intron |
| TGAAATTCCAGATCTACTAA+AGG | 0.553352 | 4.4:-81022698 | MS.gene048128:intron |
| AGGCCCTAAAATCTGAAGAA+AGG | 0.554155 | 4.4:-81024098 | MS.gene048128:CDS |
| TACCTCAATAGGTTTGGTGA+TGG | 0.556432 | 4.4:+81031912 | None:intergenic |
| GCTGTTGTCACTCGAAGTGA+TGG | 0.559453 | 4.4:-81027102 | MS.gene048128:CDS |
| TATTCCATTACCATTAGTAA+GGG | 0.560138 | 4.4:+81031888 | None:intergenic |
| CGAGGTCCTGTAGGAGTCGA+GGG | 0.562132 | 4.4:-81020343 | MS.gene048128:CDS |
| ATCCTTGAACTCCAACGTGA+AGG | 0.565086 | 4.4:-81022117 | MS.gene048128:intron |
| GATGTTGAGGGCCTTTATAG+TGG | 0.565435 | 4.4:-81025274 | MS.gene048128:CDS |
| TTTATTTATGTGGTCAATGG+CGG | 0.570819 | 4.4:+81021725 | None:intergenic |
| TCCTGCAGCCTGCAATGCAA+TGG | 0.571728 | 4.4:-81022337 | MS.gene048128:intron |
| GCATCCCTGTTGTTATAACT+AGG | 0.572085 | 4.4:-81025105 | MS.gene048128:intron |
| GGAAAAGCATGTGCAGCTGT+TGG | 0.572419 | 4.4:-81026093 | MS.gene048128:CDS |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580213 | 4.4:-81022394 | MS.gene048128:CDS |
| AACTGAGGATTTGAGCAACA+TGG | 0.583563 | 4.4:-81031839 | MS.gene048128:CDS |
| CACAAGGATCTGTCATGTAA+TGG | 0.583937 | 4.4:-81022156 | MS.gene048128:CDS |
| GGGAGTGGACAGGTAGTCGA+TGG | 0.585290 | 4.4:-81019960 | MS.gene048128:CDS |
| ATCAAATGCGGTCTTACACA+AGG | 0.591057 | 4.4:-81022883 | MS.gene048128:intron |
| AATGGCTTATTACTTAAAGG+AGG | 0.594695 | 4.4:-81022921 | MS.gene048128:CDS |
| TGATGCTGTTAGTACTAGGA+AGG | 0.595492 | 4.4:-81025803 | MS.gene048128:CDS |
| ACGCTTTGGACTAGGGGCAG+AGG | 0.595772 | 4.4:-81020485 | MS.gene048128:intron |
| TAATAACGAGGTAATTGTGT+CGG | 0.596135 | 4.4:+81025858 | None:intergenic |
| TTGCACAATTGAAATTGTAG+AGG | 0.596507 | 4.4:-81021757 | MS.gene048128:CDS |
| ACCACATAAATAAACATGGA+AGG | 0.597773 | 4.4:-81021716 | MS.gene048128:intron |
| ATTCATGCTCGAGGTCCTGT+AGG | 0.597900 | 4.4:-81020352 | MS.gene048128:CDS |
| GGAACTGTTACGTGCTGCGA+CGG | 0.598676 | 4.4:+81024474 | None:intergenic |
| AAATCAAGATTGGGCAGAGG+GGG | 0.599491 | 4.4:-81025172 | MS.gene048128:CDS |
| ACGCTTAACCTTGTTGACAA+AGG | 0.602740 | 4.4:+81031804 | None:intergenic |
| TCTGATCTTCAAAAGCCACA+AGG | 0.604032 | 4.4:-81026126 | MS.gene048128:CDS |
| CGCCTCAGAAATATTTAGCA+CGG | 0.607084 | 4.4:+81021812 | None:intergenic |
| TCGAGGTCCTGTAGGAGTCG+AGG | 0.610355 | 4.4:-81020344 | MS.gene048128:CDS |
| GAGGAAAATATTGCTGGCAG+TGG | 0.612236 | 4.4:-81024076 | MS.gene048128:CDS |
| TTTAACCCTGAAGCCTGAGA+AGG | 0.613809 | 4.4:-81023953 | MS.gene048128:intron |
| TGTCACAGAAGACTCTGAAG+TGG | 0.614012 | 4.4:-81021576 | MS.gene048128:CDS |
| CAGCATTGGCAATTCGAAGT+GGG | 0.617966 | 4.4:-81022944 | MS.gene048128:CDS |
| CACTCGTATAATGTTGTCTG+TGG | 0.619043 | 4.4:+81024582 | None:intergenic |
| CCCTAAAATCTGAAGAAAGG+AGG | 0.621678 | 4.4:-81024095 | MS.gene048128:CDS |
| TGGAGCACGCTTTGGACTAG+GGG | 0.622951 | 4.4:-81020491 | MS.gene048128:CDS |
| AAAACCGTGTACTTGCATTG+TGG | 0.623084 | 4.4:+81020518 | None:intergenic |
| CAGGTAGTCGATGGTGATCG+AGG | 0.623515 | 4.4:-81019951 | MS.gene048128:CDS |
| TGATGATGTGATAGATCTTG+TGG | 0.625953 | 4.4:-81022596 | MS.gene048128:CDS |
| ATTCCATTACCATTAGTAAG+GGG | 0.626101 | 4.4:+81031889 | None:intergenic |
| GGAGACTCTTCTTGTACACA+AGG | 0.627269 | 4.4:-81022172 | MS.gene048128:CDS |
| TTTCCATCAAGGTCACCTTG+TGG | 0.633965 | 4.4:+81026111 | None:intergenic |
| ATCATTCACTAGAAGTTGTG+AGG | 0.636467 | 4.4:+81025918 | None:intergenic |
| ATAGATCTTGTGGTCCCTAG+AGG | 0.639977 | 4.4:-81022586 | MS.gene048128:CDS |
| GCAGGTGTTCAAATATATGG+TGG | 0.640152 | 4.4:-81021849 | MS.gene048128:intron |
| TACCAGCATGACCAAGAACA+GGG | 0.642362 | 4.4:+81022521 | None:intergenic |
| TATTCCACAATGCAAGTACA+CGG | 0.643532 | 4.4:-81020522 | MS.gene048128:CDS |
| GCAGCATTGGCAATTCGAAG+TGG | 0.644064 | 4.4:-81022945 | MS.gene048128:CDS |
| TGCCGTGCTAAATATTTCTG+AGG | 0.647678 | 4.4:-81021814 | MS.gene048128:CDS |
| ATTGACCACATAAATAAACA+TGG | 0.655940 | 4.4:-81021720 | MS.gene048128:CDS |
| ATATAATGCAGGATATTGAG+GGG | 0.656221 | 4.4:-81019981 | MS.gene048128:intron |
| ATAATCAGGAGGACACCCAA+AGG | 0.660018 | 4.4:+81023197 | None:intergenic |
| AAGGATCTGTCATGTAATGG+TGG | 0.660536 | 4.4:-81022153 | MS.gene048128:CDS |
| GCCATACCAGATACAGTCAG+TGG | 0.663367 | 4.4:-81022751 | MS.gene048128:CDS |
| ACAAGTCGAATTCATGCTCG+AGG | 0.666973 | 4.4:-81020361 | MS.gene048128:CDS |
| TATAATGCAGGATATTGAGG+GGG | 0.674210 | 4.4:-81019980 | MS.gene048128:intron |
| CAAATCAAGATTGGGCAGAG+GGG | 0.679854 | 4.4:-81025173 | MS.gene048128:CDS |
| GAGACTCAAATATAATCAGG+AGG | 0.682200 | 4.4:+81023186 | None:intergenic |
| AGTGATGGAAGATTAGCACT+GGG | 0.686494 | 4.4:-81027087 | MS.gene048128:CDS |
| CATTATACGAGTGCTTCAAG+GGG | 0.688933 | 4.4:-81024572 | MS.gene048128:CDS |
| GACCTTCGATTCTAATAACG+AGG | 0.691237 | 4.4:+81025846 | None:intergenic |
| GGAAGCCCGAAGATCAAATG+CGG | 0.703388 | 4.4:-81022895 | MS.gene048128:CDS |
| GTAAGGCCAAACCTTCACGT+TGG | 0.709134 | 4.4:+81022106 | None:intergenic |
| AATACCTAGTTATAACAACA+GGG | 0.742953 | 4.4:+81025101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 81019911 | 81031971 | 81019911 | ID=MS.gene048128 |
| chr4.4 | mRNA | 81019911 | 81031971 | 81019911 | ID=MS.gene048128.t1;Parent=MS.gene048128 |
| chr4.4 | exon | 81031792 | 81031971 | 81031792 | ID=MS.gene048128.t1.exon1;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81031792 | 81031971 | 81031792 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81027062 | 81027133 | 81027062 | ID=MS.gene048128.t1.exon2;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81027062 | 81027133 | 81027062 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81026639 | 81026742 | 81026639 | ID=MS.gene048128.t1.exon3;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81026639 | 81026742 | 81026639 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81026050 | 81026152 | 81026050 | ID=MS.gene048128.t1.exon4;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81026050 | 81026152 | 81026050 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81025792 | 81025953 | 81025792 | ID=MS.gene048128.t1.exon5;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81025792 | 81025953 | 81025792 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81025106 | 81025383 | 81025106 | ID=MS.gene048128.t1.exon6;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81025106 | 81025383 | 81025106 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81024462 | 81024612 | 81024462 | ID=MS.gene048128.t1.exon7;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81024462 | 81024612 | 81024462 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81023954 | 81024118 | 81023954 | ID=MS.gene048128.t1.exon8;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81023954 | 81024118 | 81023954 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81023711 | 81023788 | 81023711 | ID=MS.gene048128.t1.exon9;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81023711 | 81023788 | 81023711 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81023166 | 81023255 | 81023166 | ID=MS.gene048128.t1.exon10;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81023166 | 81023255 | 81023166 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81022884 | 81022970 | 81022884 | ID=MS.gene048128.t1.exon11;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81022884 | 81022970 | 81022884 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81022699 | 81022785 | 81022699 | ID=MS.gene048128.t1.exon12;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81022699 | 81022785 | 81022699 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81022524 | 81022620 | 81022524 | ID=MS.gene048128.t1.exon13;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81022524 | 81022620 | 81022524 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81022338 | 81022441 | 81022338 | ID=MS.gene048128.t1.exon14;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81022338 | 81022441 | 81022338 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81022118 | 81022193 | 81022118 | ID=MS.gene048128.t1.exon15;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81022118 | 81022193 | 81022118 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81021717 | 81021867 | 81021717 | ID=MS.gene048128.t1.exon16;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81021717 | 81021867 | 81021717 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81021548 | 81021616 | 81021548 | ID=MS.gene048128.t1.exon17;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81021548 | 81021616 | 81021548 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81020486 | 81020552 | 81020486 | ID=MS.gene048128.t1.exon18;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81020486 | 81020552 | 81020486 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81020325 | 81020395 | 81020325 | ID=MS.gene048128.t1.exon19;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81020325 | 81020395 | 81020325 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| chr4.4 | exon | 81019911 | 81019992 | 81019911 | ID=MS.gene048128.t1.exon20;Parent=MS.gene048128.t1 |
| chr4.4 | CDS | 81019911 | 81019992 | 81019911 | ID=cds.MS.gene048128.t1;Parent=MS.gene048128.t1 |
| Gene Sequence |
| Protein sequence |
