Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048250.t1 | XP_024631606.1 | 91.6 | 333 | 28 | 0 | 1 | 333 | 1 | 333 | 4.40E-174 | 620.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048250.t1 | Q94B74 | 61.1 | 262 | 100 | 1 | 71 | 332 | 19 | 278 | 6.2e-92 | 339.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048250.t1 | A0A396J454 | 91.6 | 333 | 28 | 0 | 1 | 333 | 1 | 333 | 3.2e-174 | 620.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene94957 | MS.gene048250 | PPI |
MS.gene04304 | MS.gene048250 | PPI |
MS.gene048250 | MS.gene05654 | PPI |
MS.gene04190 | MS.gene048250 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048250.t1 | MTR_2g026715 | 88.889 | 333 | 24 | 1 | 1 | 333 | 1 | 320 | 0.0 | 621 |
MS.gene048250.t1 | MTR_2g026715 | 93.534 | 232 | 15 | 0 | 1 | 232 | 1 | 232 | 2.46e-164 | 457 |
MS.gene048250.t1 | MTR_4g133945 | 72.662 | 278 | 70 | 4 | 59 | 333 | 3 | 277 | 9.88e-152 | 427 |
MS.gene048250.t1 | MTR_3g460790 | 58.672 | 271 | 112 | 0 | 62 | 332 | 16 | 286 | 2.66e-116 | 338 |
MS.gene048250.t1 | MTR_8g091995 | 59.843 | 254 | 99 | 2 | 72 | 324 | 19 | 270 | 2.88e-111 | 325 |
MS.gene048250.t1 | MTR_3g082770 | 52.362 | 254 | 119 | 1 | 71 | 324 | 80 | 331 | 3.46e-104 | 309 |
MS.gene048250.t1 | MTR_3g460790 | 62.085 | 211 | 80 | 0 | 62 | 272 | 16 | 226 | 1.49e-94 | 281 |
MS.gene048250.t1 | MTR_4g100480 | 47.842 | 278 | 144 | 1 | 56 | 332 | 76 | 353 | 1.97e-94 | 285 |
MS.gene048250.t1 | MTR_0446s0020 | 66.667 | 66 | 21 | 1 | 269 | 333 | 2 | 67 | 1.44e-25 | 97.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048250.t1 | AT5G47650 | 61.069 | 262 | 100 | 1 | 71 | 332 | 19 | 278 | 8.31e-121 | 349 |
MS.gene048250.t1 | AT5G47650 | 61.069 | 262 | 100 | 1 | 71 | 332 | 19 | 278 | 8.31e-121 | 349 |
MS.gene048250.t1 | AT5G47650 | 61.069 | 262 | 100 | 1 | 71 | 332 | 19 | 278 | 8.31e-121 | 349 |
MS.gene048250.t1 | AT5G47650 | 61.069 | 262 | 100 | 1 | 71 | 332 | 66 | 325 | 5.90e-120 | 348 |
MS.gene048250.t1 | AT5G47650 | 61.069 | 262 | 100 | 1 | 71 | 332 | 65 | 324 | 6.72e-120 | 348 |
MS.gene048250.t1 | AT4G25434 | 57.647 | 255 | 108 | 0 | 70 | 324 | 18 | 272 | 1.60e-106 | 313 |
MS.gene048250.t1 | AT4G25434 | 56.078 | 255 | 107 | 1 | 70 | 324 | 18 | 267 | 7.34e-101 | 298 |
MS.gene048250.t1 | AT4G25434 | 52.482 | 282 | 107 | 1 | 70 | 324 | 18 | 299 | 1.05e-100 | 299 |
MS.gene048250.t1 | AT4G12720 | 51.119 | 268 | 128 | 3 | 65 | 330 | 4 | 270 | 2.11e-96 | 287 |
MS.gene048250.t1 | AT4G12720 | 51.119 | 268 | 128 | 3 | 65 | 330 | 4 | 270 | 2.11e-96 | 287 |
MS.gene048250.t1 | AT4G12720 | 51.119 | 268 | 128 | 3 | 65 | 330 | 4 | 270 | 2.11e-96 | 287 |
MS.gene048250.t1 | AT4G25434 | 51.064 | 282 | 106 | 2 | 70 | 324 | 18 | 294 | 2.64e-95 | 285 |
MS.gene048250.t1 | AT5G47240 | 49.442 | 269 | 130 | 3 | 58 | 324 | 86 | 350 | 3.23e-90 | 274 |
MS.gene048250.t1 | AT4G25434 | 62.814 | 199 | 74 | 0 | 70 | 268 | 18 | 216 | 3.95e-89 | 266 |
MS.gene048250.t1 | AT4G12720 | 44.481 | 308 | 128 | 4 | 65 | 330 | 4 | 310 | 1.93e-88 | 268 |
MS.gene048250.t1 | AT2G04450 | 49.057 | 265 | 131 | 4 | 63 | 324 | 2 | 265 | 1.11e-86 | 262 |
MS.gene048250.t1 | AT5G47240 | 44.966 | 298 | 129 | 4 | 58 | 324 | 86 | 379 | 2.52e-84 | 260 |
MS.gene048250.t1 | AT4G25434 | 55.752 | 226 | 73 | 1 | 70 | 268 | 18 | 243 | 7.83e-84 | 254 |
MS.gene048250.t1 | AT4G25434 | 60.804 | 199 | 73 | 1 | 70 | 268 | 18 | 211 | 1.10e-83 | 252 |
MS.gene048250.t1 | AT4G25434 | 58.462 | 195 | 81 | 0 | 130 | 324 | 33 | 227 | 2.41e-81 | 247 |
MS.gene048250.t1 | AT4G25434 | 58.462 | 195 | 81 | 0 | 130 | 324 | 33 | 227 | 2.41e-81 | 247 |
MS.gene048250.t1 | AT2G04430 | 44.981 | 269 | 141 | 4 | 68 | 331 | 7 | 273 | 8.75e-81 | 247 |
MS.gene048250.t1 | AT2G04430 | 44.981 | 269 | 141 | 4 | 68 | 331 | 26 | 292 | 1.98e-80 | 247 |
MS.gene048250.t1 | AT4G12720 | 55.941 | 202 | 87 | 2 | 65 | 264 | 4 | 205 | 6.60e-79 | 240 |
MS.gene048250.t1 | AT4G25434 | 56.410 | 195 | 80 | 1 | 130 | 324 | 33 | 222 | 7.89e-76 | 233 |
MS.gene048250.t1 | AT4G25434 | 60.355 | 169 | 67 | 0 | 70 | 238 | 18 | 186 | 1.31e-70 | 219 |
MS.gene048250.t1 | AT4G25434 | 50.725 | 207 | 75 | 1 | 145 | 324 | 1 | 207 | 4.62e-67 | 210 |
MS.gene048250.t1 | AT4G25434 | 52.551 | 196 | 66 | 1 | 70 | 238 | 18 | 213 | 4.36e-65 | 206 |
MS.gene048250.t1 | AT4G12720 | 50.000 | 188 | 91 | 3 | 145 | 330 | 1 | 187 | 2.23e-61 | 195 |
MS.gene048250.t1 | AT2G04440 | 46.575 | 146 | 76 | 1 | 63 | 206 | 2 | 147 | 3.69e-44 | 151 |
Find 70 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACACAAGCATTAAATATTT+TGG | 0.133502 | 2.3:-62564754 | None:intergenic |
GGAAAATAGTGGACTATTTC+AGG | 0.142281 | 2.3:+62565022 | MS.gene048250:CDS |
GAGAAGATAATTGAGAATTT+TGG | 0.171118 | 2.3:-62563762 | None:intergenic |
ATAGGTTGATTCAGAATTTC+TGG | 0.172583 | 2.3:+62565320 | MS.gene048250:intron |
GGAATAGTATTTGGACTTTC+AGG | 0.173194 | 2.3:-62564784 | None:intergenic |
TGCAAGATAACGAGAATTAT+TGG | 0.203640 | 2.3:-62563790 | None:intergenic |
GCATTTGCAGGAATAGTATT+TGG | 0.212021 | 2.3:-62564793 | None:intergenic |
ACTTCAAAATATCAGTCTTT+TGG | 0.268444 | 2.3:-62566393 | None:intergenic |
AAGATGGATGGGCGATATTC+TGG | 0.271028 | 2.3:+62566439 | MS.gene048250:CDS |
TTCTGGAAGTATTAGCATTC+AGG | 0.309877 | 2.3:+62565337 | MS.gene048250:CDS |
ATCTTAGGTACTAGTTGTTC+AGG | 0.313041 | 2.3:+62565001 | MS.gene048250:intron |
TATTTCAGGGAACTGGAGTT+TGG | 0.329206 | 2.3:+62565036 | MS.gene048250:CDS |
AATATTTAATGCTTGTGTAT+TGG | 0.331420 | 2.3:+62564758 | MS.gene048250:CDS |
CGATATTTGTTTGGCTAAGA+TGG | 0.346862 | 2.3:+62566423 | MS.gene048250:CDS |
TGCAGGGCAAGAAGGGAGTT+TGG | 0.356585 | 2.3:+62564535 | MS.gene048250:intron |
ACCCTGTGTGTGGCATTTGC+AGG | 0.375917 | 2.3:-62564805 | None:intergenic |
GTACATGAACGATATTTGTT+TGG | 0.379153 | 2.3:+62566414 | MS.gene048250:CDS |
AAGTTTGATAATGTAGATAC+TGG | 0.404746 | 2.3:-62566469 | None:intergenic |
AGTGGACTATTTCAGGGAAC+TGG | 0.415432 | 2.3:+62565029 | MS.gene048250:CDS |
AGTGCAGAGGTCAGAGATAG+AGG | 0.417005 | 2.3:+62565703 | MS.gene048250:CDS |
CTATCTCTGACCTCTGCACT+TGG | 0.417708 | 2.3:-62565700 | None:intergenic |
TATTCTTTATGTGTATGTTA+CGG | 0.420564 | 2.3:+62565660 | MS.gene048250:CDS |
ACATCAACCGATGATAAGTA+TGG | 0.442025 | 2.3:+62564087 | MS.gene048250:CDS |
CTTCAGCAAGACCGACTAGA+TGG | 0.444644 | 2.3:-62564572 | None:intergenic |
CCCTACTGGAGTTGTTGATC+AGG | 0.445398 | 2.3:+62565064 | MS.gene048250:CDS |
ATTAAAACACCCACTTCAAA+AGG | 0.462920 | 2.3:+62563858 | MS.gene048250:CDS |
CACTTGGATCTCAGACGAAA+GGG | 0.464839 | 2.3:-62565684 | None:intergenic |
TGTGGAGCTTGATCAGCCTA+TGG | 0.468731 | 2.3:+62564119 | MS.gene048250:CDS |
GCGGTTGACATGCATCGAAT+AGG | 0.469119 | 2.3:-62564030 | None:intergenic |
CAATAGTGTTACCTTAACTA+AGG | 0.470543 | 2.3:-62564595 | None:intergenic |
GTCAGAGATAGAGGGTGCAC+AGG | 0.487803 | 2.3:+62565712 | MS.gene048250:CDS |
ATTTGTTTGGCTAAGATGGA+TGG | 0.489246 | 2.3:+62566427 | MS.gene048250:CDS |
TAAATCTGACTTCTCAAAGA+AGG | 0.503504 | 2.3:-62565639 | None:intergenic |
GGAGTTTGGAAATTCCCTAC+TGG | 0.504272 | 2.3:+62565050 | MS.gene048250:CDS |
GAAAATAGTGGACTATTTCA+GGG | 0.507425 | 2.3:+62565023 | MS.gene048250:CDS |
CTAGTTGTTCAGGAAAATAG+TGG | 0.509297 | 2.3:+62565011 | MS.gene048250:CDS |
TATTATATGTACTTGAATGC+TGG | 0.510440 | 2.3:+62566505 | MS.gene048250:CDS |
GTTGTCTTGCAGGGCAAGAA+GGG | 0.510569 | 2.3:+62564528 | MS.gene048250:intron |
ACTGCAGTGGATGCCATTTG+TGG | 0.515009 | 2.3:+62566348 | MS.gene048250:intron |
TCTTGCTGAAGCCTTAGTTA+AGG | 0.518721 | 2.3:+62564584 | MS.gene048250:CDS |
TGTTGTCTTGCAGGGCAAGA+AGG | 0.521293 | 2.3:+62564527 | MS.gene048250:intron |
AGAGAGGTCAAAGAAGAGAC+AGG | 0.538041 | 2.3:+62565202 | MS.gene048250:CDS |
TGAGACGCGTATTCCACAAA+TGG | 0.538269 | 2.3:-62566361 | None:intergenic |
TTTGTTTGGCTAAGATGGAT+GGG | 0.543258 | 2.3:+62566428 | MS.gene048250:CDS |
TGAATGCTGGAGCATTGAAA+AGG | 0.556559 | 2.3:+62566518 | MS.gene048250:CDS |
GCACTTGGATCTCAGACGAA+AGG | 0.574989 | 2.3:-62565685 | None:intergenic |
AAATTACCTATCCATCTAGT+CGG | 0.581467 | 2.3:+62564561 | MS.gene048250:CDS |
GCAAATGCCACACACAGGGT+TGG | 0.588572 | 2.3:+62564808 | MS.gene048250:CDS |
GCCACACACAGGGTTGGCGT+TGG | 0.590682 | 2.3:+62564814 | MS.gene048250:CDS |
GCAAGACCGACTAGATGGAT+AGG | 0.593880 | 2.3:-62564567 | None:intergenic |
ACCTGATCAACAACTCCAGT+AGG | 0.596031 | 2.3:-62565065 | None:intergenic |
GTGCAGAGGTCAGAGATAGA+GGG | 0.598275 | 2.3:+62565704 | MS.gene048250:CDS |
TTCCTGCAAATGCCACACAC+AGG | 0.601163 | 2.3:+62564803 | MS.gene048250:CDS |
TAAGTATGGCGGCGTTATTG+TGG | 0.606216 | 2.3:+62564101 | MS.gene048250:CDS |
CCTGATCAACAACTCCAGTA+GGG | 0.608982 | 2.3:-62565064 | None:intergenic |
TTATATCTTCATGTAGAACA+AGG | 0.611389 | 2.3:+62563829 | MS.gene048250:CDS |
TCCTGCAAATGCCACACACA+GGG | 0.616524 | 2.3:+62564804 | MS.gene048250:CDS |
AGAAGATATTTGCGTAGCAG+CGG | 0.617995 | 2.3:+62565177 | MS.gene048250:CDS |
ACGAATGTAGTCGAATCCAT+AGG | 0.621160 | 2.3:-62564135 | None:intergenic |
TTGCGTAGCAGCGGTAAGAG+AGG | 0.623662 | 2.3:+62565186 | MS.gene048250:CDS |
TTGAACTTGATCTTCTGCCG+CGG | 0.625446 | 2.3:-62564049 | None:intergenic |
TAAGATTGGAGTGTCATCCA+CGG | 0.636159 | 2.3:+62564005 | MS.gene048250:CDS |
ACTTGGATCTCAGACGAAAG+GGG | 0.640184 | 2.3:-62565683 | None:intergenic |
AACGCCGCCATACTTATCAT+CGG | 0.651332 | 2.3:-62564094 | None:intergenic |
CGGCAGAAGATCAAGTTCAA+CGG | 0.658111 | 2.3:+62564052 | MS.gene048250:CDS |
CGTCTGAGATCCAAGTGCAG+AGG | 0.669999 | 2.3:+62565690 | MS.gene048250:CDS |
TATTCGATGCATGTCAACCG+CGG | 0.688175 | 2.3:+62564032 | MS.gene048250:CDS |
CATGCATCGAATAGGAACCG+TGG | 0.694483 | 2.3:-62564022 | None:intergenic |
ACCAACGCCAACCCTGTGTG+TGG | 0.703574 | 2.3:-62564815 | None:intergenic |
TCAACCGATGATAAGTATGG+CGG | 0.745097 | 2.3:+62564090 | MS.gene048250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACATTGAAAAATGAAAA+AGG | - | chr2.3:62566256-62566275 | None:intergenic | 15.0% |
!! | ATATCATCTTATACAAAAAT+AGG | - | chr2.3:62565116-62565135 | None:intergenic | 15.0% |
!! | ATATTATCAATGATTGAAAA+AGG | + | chr2.3:62565378-62565397 | MS.gene048250:intron | 15.0% |
!! | TATTATCAATGATTGAAAAA+GGG | + | chr2.3:62565379-62565398 | MS.gene048250:intron | 15.0% |
!!! | TTATGATGATTATGTTTTTT+TGG | + | chr2.3:62563899-62563918 | MS.gene048250:intron | 15.0% |
!!! | TTTAAAATGTTCAATACTTA+TGG | + | chr2.3:62565782-62565801 | MS.gene048250:intron | 15.0% |
!! | AATATTTAATGCTTGTGTAT+TGG | + | chr2.3:62564758-62564777 | MS.gene048250:CDS | 20.0% |
!! | AATGATATTAGCCAAAAAAA+TGG | - | chr2.3:62565450-62565469 | None:intergenic | 20.0% |
!! | ACAATTGAGTTATTTATGTT+TGG | + | chr2.3:62564408-62564427 | MS.gene048250:intron | 20.0% |
!! | ATTATCAATGATTGAAAAAG+GGG | + | chr2.3:62565380-62565399 | MS.gene048250:intron | 20.0% |
!! | ATTGCTTACCATATTAATAA+TGG | + | chr2.3:62564614-62564633 | MS.gene048250:intron | 20.0% |
!! | TATTCTTTATGTGTATGTTA+CGG | + | chr2.3:62565660-62565679 | MS.gene048250:CDS | 20.0% |
!! | TCTATCTTAAATCCATTATT+GGG | + | chr2.3:62565897-62565916 | MS.gene048250:intron | 20.0% |
!! | TTGTTTAGTATTCAATAACA+AGG | - | chr2.3:62564874-62564893 | None:intergenic | 20.0% |
!!! | ATGATATCATTTTAGGTTTT+AGG | - | chr2.3:62566070-62566089 | None:intergenic | 20.0% |
!!! | ATTATTTCTTTAAAGTTTCC+TGG | + | chr2.3:62565537-62565556 | MS.gene048250:intron | 20.0% |
!!! | TAATGCTATGATATCATTTT+AGG | - | chr2.3:62566077-62566096 | None:intergenic | 20.0% |
!!! | TACACAAGCATTAAATATTT+TGG | - | chr2.3:62564757-62564776 | None:intergenic | 20.0% |
! | AACACGTAAATACTAGATTA+AGG | - | chr2.3:62566183-62566202 | None:intergenic | 25.0% |
! | ACACGTAAATACTAGATTAA+GGG | - | chr2.3:62566182-62566201 | None:intergenic | 25.0% |
! | ACATTGAAAAATGAAAAAGG+AGG | - | chr2.3:62566253-62566272 | None:intergenic | 25.0% |
! | AGAAATAAACAAATGTTCCA+AGG | - | chr2.3:62565491-62565510 | None:intergenic | 25.0% |
! | CAACAGAACCATTATTAATA+TGG | - | chr2.3:62564625-62564644 | None:intergenic | 25.0% |
! | CATTGAAAAATGAAAAAGGA+GGG | - | chr2.3:62566252-62566271 | None:intergenic | 25.0% |
! | CTACTTATTTAACCAATACA+GGG | + | chr2.3:62565154-62565173 | MS.gene048250:intron | 25.0% |
! | GTCTATCTTAAATCCATTAT+TGG | + | chr2.3:62565896-62565915 | MS.gene048250:intron | 25.0% |
! | TAATCAAGCTTGTAGTTAAT+TGG | + | chr2.3:62564899-62564918 | MS.gene048250:intron | 25.0% |
! | TAGAAGAAAACATTAAGTGA+TGG | - | chr2.3:62565851-62565870 | None:intergenic | 25.0% |
! | TAGTATTTACGTGTTTAGTT+AGG | + | chr2.3:62566188-62566207 | MS.gene048250:intron | 25.0% |
! | TATTATATGTACTTGAATGC+TGG | + | chr2.3:62566505-62566524 | MS.gene048250:CDS | 25.0% |
! | TGAAAAATGCATGATGAAAT+AGG | + | chr2.3:62564272-62564291 | MS.gene048250:intron | 25.0% |
! | TTATATCTTCATGTAGAACA+AGG | + | chr2.3:62563829-62563848 | MS.gene048250:CDS | 25.0% |
! | TTGAATCTTTAGGTAGTTAT+TGG | + | chr2.3:62564946-62564965 | MS.gene048250:intron | 25.0% |
! | TTGAGTTATTTATGTTTGGA+TGG | + | chr2.3:62564412-62564431 | MS.gene048250:intron | 25.0% |
! | TTGATCAGATATTCATATGA+AGG | - | chr2.3:62565602-62565621 | None:intergenic | 25.0% |
!! | ACTTCAAAATATCAGTCTTT+TGG | - | chr2.3:62566396-62566415 | None:intergenic | 25.0% |
!! | CATTGTTATTCATCAATCTT+AGG | + | chr2.3:62564986-62565005 | MS.gene048250:intron | 25.0% |
!! | GAGAAGATAATTGAGAATTT+TGG | - | chr2.3:62563765-62563784 | None:intergenic | 25.0% |
!! | TTTTCCTTACTAGTTAAGAT+TGG | + | chr2.3:62563991-62564010 | MS.gene048250:intron | 25.0% |
!!! | AAGTTTGATAATGTAGATAC+TGG | - | chr2.3:62566472-62566491 | None:intergenic | 25.0% |
!!! | ATCTGTCACGAATTTTTTAT+TGG | + | chr2.3:62564490-62564509 | MS.gene048250:intron | 25.0% |
!!! | ATGGTTTTACTCTAAATGTT+TGG | + | chr2.3:62564431-62564450 | MS.gene048250:intron | 25.0% |
!!! | CTTGGTTCTTTCAATTTTAT+AGG | + | chr2.3:62565302-62565321 | MS.gene048250:intron | 25.0% |
!!! | TATTGACATGTCCATTTTTT+TGG | + | chr2.3:62565436-62565455 | MS.gene048250:intron | 25.0% |
AAATGCATGAAATTGATGCA+TGG | - | chr2.3:62564688-62564707 | None:intergenic | 30.0% | |
AAATTACCTATCCATCTAGT+CGG | + | chr2.3:62564561-62564580 | MS.gene048250:CDS | 30.0% | |
ATTAAAACACCCACTTCAAA+AGG | + | chr2.3:62563858-62563877 | MS.gene048250:CDS | 30.0% | |
ATTAAGTGATGGCTTAATGA+AGG | - | chr2.3:62565840-62565859 | None:intergenic | 30.0% | |
CAATAGTGTTACCTTAACTA+AGG | - | chr2.3:62564598-62564617 | None:intergenic | 30.0% | |
CACGTAAATACTAGATTAAG+GGG | - | chr2.3:62566181-62566200 | None:intergenic | 30.0% | |
CCTACTTATTTAACCAATAC+AGG | + | chr2.3:62565153-62565172 | MS.gene048250:intron | 30.0% | |
GAAGTTTGGTTAATGAAGAT+TGG | + | chr2.3:62564646-62564665 | MS.gene048250:intron | 30.0% | |
GGTATGTTAGTTATAGTTCA+AGG | + | chr2.3:62565733-62565752 | MS.gene048250:intron | 30.0% | |
GTACATGAACGATATTTGTT+TGG | + | chr2.3:62566414-62566433 | MS.gene048250:CDS | 30.0% | |
TAAATCAATGTTGTCTTGCA+GGG | + | chr2.3:62564519-62564538 | MS.gene048250:intron | 30.0% | |
TAAATCTGACTTCTCAAAGA+AGG | - | chr2.3:62565642-62565661 | None:intergenic | 30.0% | |
TGCAAGATAACGAGAATTAT+TGG | - | chr2.3:62563793-62563812 | None:intergenic | 30.0% | |
TGGCTAATATCATTGTCTAT+GGG | + | chr2.3:62565456-62565475 | MS.gene048250:intron | 30.0% | |
TTCAAACTAAGCAATGTTTC+TGG | + | chr2.3:62565757-62565776 | MS.gene048250:intron | 30.0% | |
TTGGCTAATATCATTGTCTA+TGG | + | chr2.3:62565455-62565474 | MS.gene048250:intron | 30.0% | |
TTTACGATTCTTTCTATGAC+AGG | + | chr2.3:62564705-62564724 | MS.gene048250:intron | 30.0% | |
!! | ATAGGTTGATTCAGAATTTC+TGG | + | chr2.3:62565320-62565339 | MS.gene048250:intron | 30.0% |
!! | CCTGTATTGGTTAAATAAGT+AGG | - | chr2.3:62565156-62565175 | None:intergenic | 30.0% |
!! | GAAAATAGTGGACTATTTCA+GGG | + | chr2.3:62565023-62565042 | MS.gene048250:CDS | 30.0% |
AAGAACCAAGAGTTAAATGC+CGG | - | chr2.3:62565292-62565311 | None:intergenic | 35.0% | |
AATGCTGTACAATTACATGC+GGG | + | chr2.3:62565238-62565257 | MS.gene048250:intron | 35.0% | |
ACATCAACCGATGATAAGTA+TGG | + | chr2.3:62564087-62564106 | MS.gene048250:CDS | 35.0% | |
AGAATGCACATAGTAGAAGT+TGG | - | chr2.3:62566220-62566239 | None:intergenic | 35.0% | |
ATCTTAGGTACTAGTTGTTC+AGG | + | chr2.3:62565001-62565020 | MS.gene048250:intron | 35.0% | |
ATTTGTTTGGCTAAGATGGA+TGG | + | chr2.3:62566427-62566446 | MS.gene048250:CDS | 35.0% | |
CAAATATCTTCTCCCTGTAT+TGG | - | chr2.3:62565169-62565188 | None:intergenic | 35.0% | |
CAATGCTGTACAATTACATG+CGG | + | chr2.3:62565237-62565256 | MS.gene048250:intron | 35.0% | |
CACTCCAATCTTAACTAGTA+AGG | - | chr2.3:62563998-62564017 | None:intergenic | 35.0% | |
CGATATTTGTTTGGCTAAGA+TGG | + | chr2.3:62566423-62566442 | MS.gene048250:CDS | 35.0% | |
CTAGTTGTTCAGGAAAATAG+TGG | + | chr2.3:62565011-62565030 | MS.gene048250:CDS | 35.0% | |
CTTCAAAAGGTAGTTGCTTA+AGG | + | chr2.3:62563871-62563890 | MS.gene048250:intron | 35.0% | |
GAAGAATTGATATCTGCCTA+AGG | - | chr2.3:62566316-62566335 | None:intergenic | 35.0% | |
GCATTTGCAGGAATAGTATT+TGG | - | chr2.3:62564796-62564815 | None:intergenic | 35.0% | |
GGAATAGTATTTGGACTTTC+AGG | - | chr2.3:62564787-62564806 | None:intergenic | 35.0% | |
GTAAATCAATGTTGTCTTGC+AGG | + | chr2.3:62564518-62564537 | MS.gene048250:intron | 35.0% | |
TAAATGCTTGACAAGAATCC+AGG | - | chr2.3:62565558-62565577 | None:intergenic | 35.0% | |
TCAGGTAAATGTGTTGGATA+TGG | + | chr2.3:62565082-62565101 | MS.gene048250:intron | 35.0% | |
TGAAAAAGGGGACTTCAAAT+TGG | + | chr2.3:62565392-62565411 | MS.gene048250:intron | 35.0% | |
TGAAGGAAAGAGGAAGAAAA+TGG | - | chr2.3:62565823-62565842 | None:intergenic | 35.0% | |
TGTCATGAATGAAAAACACG+AGG | + | chr2.3:62564843-62564862 | MS.gene048250:CDS | 35.0% | |
TGTTGATCAGGTAAATGTGT+TGG | + | chr2.3:62565076-62565095 | MS.gene048250:intron | 35.0% | |
TGTTTCCTTCTAACAAGCAT+TGG | - | chr2.3:62564314-62564333 | None:intergenic | 35.0% | |
TTACGTGTTTAGTTAGGCAT+GGG | + | chr2.3:62566194-62566213 | MS.gene048250:intron | 35.0% | |
TTCTACTATGTGCATTCTGA+AGG | + | chr2.3:62566222-62566241 | MS.gene048250:intron | 35.0% | |
TTTACGTGTTTAGTTAGGCA+TGG | + | chr2.3:62566193-62566212 | MS.gene048250:intron | 35.0% | |
TTTGTTTGGCTAAGATGGAT+GGG | + | chr2.3:62566428-62566447 | MS.gene048250:CDS | 35.0% | |
! | AATGGTTCTGTTGAGAAGTT+TGG | + | chr2.3:62564632-62564651 | MS.gene048250:intron | 35.0% |
! | ATATCAGTCTTTTGGACGAA+TGG | - | chr2.3:62566388-62566407 | None:intergenic | 35.0% |
! | CGTATTTTTCTTTACTGCAG+TGG | + | chr2.3:62566335-62566354 | MS.gene048250:intron | 35.0% |
! | TGCGAGTTGTGATATTGATT+TGG | + | chr2.3:62564383-62564402 | MS.gene048250:intron | 35.0% |
! | TTAGAGCTTCGATTTTACAC+TGG | + | chr2.3:62564166-62564185 | MS.gene048250:CDS | 35.0% |
! | TTCATCCAATGCTTGTTAGA+AGG | + | chr2.3:62564306-62564325 | MS.gene048250:intron | 35.0% |
! | TTCTATGACAGGAAGGTTTT+TGG | + | chr2.3:62564716-62564735 | MS.gene048250:intron | 35.0% |
!! | GGAAAATAGTGGACTATTTC+AGG | + | chr2.3:62565022-62565041 | MS.gene048250:CDS | 35.0% |
!! | TAAGCAACTACCTTTTGAAG+TGG | - | chr2.3:62563871-62563890 | None:intergenic | 35.0% |
!! | TTCTGGAAGTATTAGCATTC+AGG | + | chr2.3:62565337-62565356 | MS.gene048250:CDS | 35.0% |
!!! | AAGCAACTACCTTTTGAAGT+GGG | - | chr2.3:62563870-62563889 | None:intergenic | 35.0% |
AAAAGGGGACTTCAAATTGG+AGG | + | chr2.3:62565395-62565414 | MS.gene048250:intron | 40.0% | |
ACGAATGTAGTCGAATCCAT+AGG | - | chr2.3:62564138-62564157 | None:intergenic | 40.0% | |
AGAAGATATTTGCGTAGCAG+CGG | + | chr2.3:62565177-62565196 | MS.gene048250:CDS | 40.0% | |
CGATTCTTTCTATGACAGGA+AGG | + | chr2.3:62564709-62564728 | MS.gene048250:intron | 40.0% | |
CGTTTGAGGGTTGAATCTTT+AGG | + | chr2.3:62564936-62564955 | MS.gene048250:intron | 40.0% | |
CTTGAAAGGAGAGTTGAGTT+AGG | + | chr2.3:62566125-62566144 | MS.gene048250:intron | 40.0% | |
GACTTCAAATTGGAGGTAGA+AGG | + | chr2.3:62565402-62565421 | MS.gene048250:intron | 40.0% | |
GATGGCTTAATGAAGGAAAG+AGG | - | chr2.3:62565833-62565852 | None:intergenic | 40.0% | |
GCAATCTTCACCTTACAAGT+CGG | + | chr2.3:62566029-62566048 | MS.gene048250:intron | 40.0% | |
GTAAGGTGAAGATTGCCTAA+GGG | - | chr2.3:62566025-62566044 | None:intergenic | 40.0% | |
TATTTCAGGGAACTGGAGTT+TGG | + | chr2.3:62565036-62565055 | MS.gene048250:CDS | 40.0% | |
TCAACCGATGATAAGTATGG+CGG | + | chr2.3:62564090-62564109 | MS.gene048250:CDS | 40.0% | |
TCTTGCTGAAGCCTTAGTTA+AGG | + | chr2.3:62564584-62564603 | MS.gene048250:CDS | 40.0% | |
TGTAAGGTGAAGATTGCCTA+AGG | - | chr2.3:62566026-62566045 | None:intergenic | 40.0% | |
! | CAAGTCGGTTTCATGGAATT+AGG | + | chr2.3:62566044-62566063 | MS.gene048250:intron | 40.0% |
! | GATTTTACACTGGAAGCAGA+TGG | + | chr2.3:62564176-62564195 | MS.gene048250:CDS | 40.0% |
! | TAAGATTGGAGTGTCATCCA+CGG | + | chr2.3:62564005-62564024 | MS.gene048250:CDS | 40.0% |
! | TTGAGAGTGTACTGTACCTT+AGG | + | chr2.3:62566297-62566316 | MS.gene048250:intron | 40.0% |
!! | TGAATGCTGGAGCATTGAAA+AGG | + | chr2.3:62566518-62566537 | MS.gene048250:CDS | 40.0% |
!! | TTCCATGAAACCGACTTGTA+AGG | - | chr2.3:62566042-62566061 | None:intergenic | 40.0% |
AAACAGACCCTAAGCTTGGA+TGG | - | chr2.3:62565923-62565942 | None:intergenic | 45.0% | |
AACGCCGCCATACTTATCAT+CGG | - | chr2.3:62564097-62564116 | None:intergenic | 45.0% | |
AAGATGGATGGGCGATATTC+TGG | + | chr2.3:62566439-62566458 | MS.gene048250:CDS | 45.0% | |
AAGCTTGGATGGCCCAATAA+TGG | - | chr2.3:62565912-62565931 | None:intergenic | 45.0% | |
ACCTGATCAACAACTCCAGT+AGG | - | chr2.3:62565068-62565087 | None:intergenic | 45.0% | |
ACTTGGATCTCAGACGAAAG+GGG | - | chr2.3:62565686-62565705 | None:intergenic | 45.0% | |
AGAGAGGTCAAAGAAGAGAC+AGG | + | chr2.3:62565202-62565221 | MS.gene048250:CDS | 45.0% | |
AGTACTGCCTTGACGTTTGA+GGG | + | chr2.3:62564923-62564942 | MS.gene048250:intron | 45.0% | |
ATCCAAGCTTAGGGTCTGTT+TGG | + | chr2.3:62565922-62565941 | MS.gene048250:intron | 45.0% | |
CAAGAGTTAAATGCCGGTAG+AGG | - | chr2.3:62565286-62565305 | None:intergenic | 45.0% | |
CACTTGGATCTCAGACGAAA+GGG | - | chr2.3:62565687-62565706 | None:intergenic | 45.0% | |
CCTGATCAACAACTCCAGTA+GGG | - | chr2.3:62565067-62565086 | None:intergenic | 45.0% | |
CGGCAGAAGATCAAGTTCAA+CGG | + | chr2.3:62564052-62564071 | MS.gene048250:CDS | 45.0% | |
CTCTACCGGCATTTAACTCT+TGG | + | chr2.3:62565284-62565303 | MS.gene048250:intron | 45.0% | |
GATTCAACCCTCAAACGTCA+AGG | - | chr2.3:62564933-62564952 | None:intergenic | 45.0% | |
GGAGTTTGGAAATTCCCTAC+TGG | + | chr2.3:62565050-62565069 | MS.gene048250:CDS | 45.0% | |
GTCTGTTTGGGAGTTTAGGA+GGG | + | chr2.3:62565935-62565954 | MS.gene048250:intron | 45.0% | |
TAAGTATGGCGGCGTTATTG+TGG | + | chr2.3:62564101-62564120 | MS.gene048250:CDS | 45.0% | |
TAGAGGAACTGGAATCCACA+TGG | - | chr2.3:62565269-62565288 | None:intergenic | 45.0% | |
TAGGGTCTGTTTGGGAGTTT+AGG | + | chr2.3:62565931-62565950 | MS.gene048250:intron | 45.0% | |
TATCCAGTCTCGAGCTTGAA+AGG | + | chr2.3:62566111-62566130 | MS.gene048250:intron | 45.0% | |
TATTCGATGCATGTCAACCG+CGG | + | chr2.3:62564032-62564051 | MS.gene048250:CDS | 45.0% | |
TATTGGGCCATCCAAGCTTA+GGG | + | chr2.3:62565913-62565932 | MS.gene048250:intron | 45.0% | |
TCCAAGCTTAGGGTCTGTTT+GGG | + | chr2.3:62565923-62565942 | MS.gene048250:intron | 45.0% | |
TCTATGGGAGAATGTGTCCT+TGG | + | chr2.3:62565471-62565490 | MS.gene048250:intron | 45.0% | |
TCTGTTTGGGAGTTTAGGAG+GGG | + | chr2.3:62565936-62565955 | MS.gene048250:intron | 45.0% | |
TGAGACGCGTATTCCACAAA+TGG | - | chr2.3:62566364-62566383 | None:intergenic | 45.0% | |
TTAAATGCCGGTAGAGGAAC+TGG | - | chr2.3:62565280-62565299 | None:intergenic | 45.0% | |
TTATTGGGCCATCCAAGCTT+AGG | + | chr2.3:62565912-62565931 | MS.gene048250:intron | 45.0% | |
TTGAACTTGATCTTCTGCCG+CGG | - | chr2.3:62564052-62564071 | None:intergenic | 45.0% | |
! | AAGTACTGCCTTGACGTTTG+AGG | + | chr2.3:62564922-62564941 | MS.gene048250:intron | 45.0% |
! | CACCTTACAAGTCGGTTTCA+TGG | + | chr2.3:62566037-62566056 | MS.gene048250:intron | 45.0% |
!! | AGTGGACTATTTCAGGGAAC+TGG | + | chr2.3:62565029-62565048 | MS.gene048250:CDS | 45.0% |
AAACTCCCAAACAGGCCCTT+AGG | + | chr2.3:62566007-62566026 | MS.gene048250:intron | 50.0% | |
AGATTGCCTAAGGGCCTGTT+TGG | - | chr2.3:62566016-62566035 | None:intergenic | 50.0% | |
AGTGCAGAGGTCAGAGATAG+AGG | + | chr2.3:62565703-62565722 | MS.gene048250:CDS | 50.0% | |
CATGCATCGAATAGGAACCG+TGG | - | chr2.3:62564025-62564044 | None:intergenic | 50.0% | |
CCCTACTGGAGTTGTTGATC+AGG | + | chr2.3:62565064-62565083 | MS.gene048250:CDS | 50.0% | |
CTATCTCTGACCTCTGCACT+TGG | - | chr2.3:62565703-62565722 | None:intergenic | 50.0% | |
CTTCAGCAAGACCGACTAGA+TGG | - | chr2.3:62564575-62564594 | None:intergenic | 50.0% | |
GAGTTTAGGAGGGGAGAAGA+GGG | + | chr2.3:62565945-62565964 | MS.gene048250:intron | 50.0% | |
GATTGCCTAAGGGCCTGTTT+GGG | - | chr2.3:62566015-62566034 | None:intergenic | 50.0% | |
GCAAGACCGACTAGATGGAT+AGG | - | chr2.3:62564570-62564589 | None:intergenic | 50.0% | |
GCACTTGGATCTCAGACGAA+AGG | - | chr2.3:62565688-62565707 | None:intergenic | 50.0% | |
GCGGTTGACATGCATCGAAT+AGG | - | chr2.3:62564033-62564052 | None:intergenic | 50.0% | |
GGTCTGTTTGGGAGTTTAGG+AGG | + | chr2.3:62565934-62565953 | MS.gene048250:intron | 50.0% | |
GTGCAGAGGTCAGAGATAGA+GGG | + | chr2.3:62565704-62565723 | MS.gene048250:CDS | 50.0% | |
GTGGATTCCAGTTCCTCTAC+CGG | + | chr2.3:62565270-62565289 | MS.gene048250:intron | 50.0% | |
GTTGTCTTGCAGGGCAAGAA+GGG | + | chr2.3:62564528-62564547 | MS.gene048250:intron | 50.0% | |
TAAGGGCCTGTTTGGGAGTT+TGG | - | chr2.3:62566008-62566027 | None:intergenic | 50.0% | |
TCCCAAACAGACCCTAAGCT+TGG | - | chr2.3:62565927-62565946 | None:intergenic | 50.0% | |
TCCTGCAAATGCCACACACA+GGG | + | chr2.3:62564804-62564823 | MS.gene048250:CDS | 50.0% | |
TCTCCTTTCAAGCTCGAGAC+TGG | - | chr2.3:62566117-62566136 | None:intergenic | 50.0% | |
TGTGGAGCTTGATCAGCCTA+TGG | + | chr2.3:62564119-62564138 | MS.gene048250:CDS | 50.0% | |
TGTTGTCTTGCAGGGCAAGA+AGG | + | chr2.3:62564527-62564546 | MS.gene048250:intron | 50.0% | |
TTCCTGCAAATGCCACACAC+AGG | + | chr2.3:62564803-62564822 | MS.gene048250:CDS | 50.0% | |
! | ACTGCAGTGGATGCCATTTG+TGG | + | chr2.3:62566348-62566367 | MS.gene048250:intron | 50.0% |
ACCCTGTGTGTGGCATTTGC+AGG | - | chr2.3:62564808-62564827 | None:intergenic | 55.0% | |
GCAAATGCCACACACAGGGT+TGG | + | chr2.3:62564808-62564827 | MS.gene048250:CDS | 55.0% | |
GCCTGTTTGGGAGTTTGGAG+GGG | - | chr2.3:62566003-62566022 | None:intergenic | 55.0% | |
GGAGTTTAGGAGGGGAGAAG+AGG | + | chr2.3:62565944-62565963 | MS.gene048250:intron | 55.0% | |
GGCCTGTTTGGGAGTTTGGA+GGG | - | chr2.3:62566004-62566023 | None:intergenic | 55.0% | |
TCCCCTCCAAACTCCCAAAC+AGG | + | chr2.3:62565999-62566018 | MS.gene048250:intron | 55.0% | |
TGCAGGGCAAGAAGGGAGTT+TGG | + | chr2.3:62564535-62564554 | MS.gene048250:intron | 55.0% | |
TTGCGTAGCAGCGGTAAGAG+AGG | + | chr2.3:62565186-62565205 | MS.gene048250:CDS | 55.0% | |
! | AGCGAAGGACTTTGGGGGAA+GGG | - | chr2.3:62565980-62565999 | None:intergenic | 55.0% |
! | CGTCTGAGATCCAAGTGCAG+AGG | + | chr2.3:62565690-62565709 | MS.gene048250:CDS | 55.0% |
! | GTCAGAGATAGAGGGTGCAC+AGG | + | chr2.3:62565712-62565731 | MS.gene048250:CDS | 55.0% |
!! | TACATGCGGGCTAGTCCATG+TGG | + | chr2.3:62565251-62565270 | MS.gene048250:intron | 55.0% |
ACCAACGCCAACCCTGTGTG+TGG | - | chr2.3:62564818-62564837 | None:intergenic | 60.0% | |
AGGAGGGGAGAAGAGGGCTA+TGG | + | chr2.3:62565951-62565970 | MS.gene048250:intron | 60.0% | |
AGGGGAGCGAAGGACTTTGG+GGG | - | chr2.3:62565985-62566004 | None:intergenic | 60.0% | |
GAGGGGAGCGAAGGACTTTG+GGG | - | chr2.3:62565986-62566005 | None:intergenic | 60.0% | |
GGAGGGGAGAAGAGGGCTAT+GGG | + | chr2.3:62565952-62565971 | MS.gene048250:intron | 60.0% | |
GGAGGGGAGCGAAGGACTTT+GGG | - | chr2.3:62565987-62566006 | None:intergenic | 60.0% | |
GGGCCTGTTTGGGAGTTTGG+AGG | - | chr2.3:62566005-62566024 | None:intergenic | 60.0% | |
TGGAGGGGAGCGAAGGACTT+TGG | - | chr2.3:62565988-62566007 | None:intergenic | 60.0% | |
! | GAGCGAAGGACTTTGGGGGA+AGG | - | chr2.3:62565981-62566000 | None:intergenic | 60.0% |
! | GCGAAGGACTTTGGGGGAAG+GGG | - | chr2.3:62565979-62565998 | None:intergenic | 60.0% |
GGGAGTTTGGAGGGGAGCGA+AGG | - | chr2.3:62565995-62566014 | None:intergenic | 65.0% | |
! | GCCACACACAGGGTTGGCGT+TGG | + | chr2.3:62564814-62564833 | MS.gene048250:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 62563747 | 62566552 | 62563747 | ID=MS.gene048250 |
chr2.3 | mRNA | 62563747 | 62566552 | 62563747 | ID=MS.gene048250.t1;Parent=MS.gene048250 |
chr2.3 | exon | 62563747 | 62563879 | 62563747 | ID=MS.gene048250.t1.exon1;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62563747 | 62563879 | 62563747 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62564004 | 62564197 | 62564004 | ID=MS.gene048250.t1.exon2;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62564004 | 62564197 | 62564004 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62564540 | 62564605 | 62564540 | ID=MS.gene048250.t1.exon3;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62564540 | 62564605 | 62564540 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62564727 | 62564864 | 62564727 | ID=MS.gene048250.t1.exon4;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62564727 | 62564864 | 62564727 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62565008 | 62565085 | 62565008 | ID=MS.gene048250.t1.exon5;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62565008 | 62565085 | 62565008 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62565175 | 62565225 | 62565175 | ID=MS.gene048250.t1.exon6;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62565175 | 62565225 | 62565175 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62565324 | 62565358 | 62565324 | ID=MS.gene048250.t1.exon7;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62565324 | 62565358 | 62565324 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62565625 | 62565733 | 62565625 | ID=MS.gene048250.t1.exon8;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62565625 | 62565733 | 62565625 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
chr2.3 | exon | 62566355 | 62566552 | 62566355 | ID=MS.gene048250.t1.exon9;Parent=MS.gene048250.t1 |
chr2.3 | CDS | 62566355 | 62566552 | 62566355 | ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1 |
Gene Sequence |
Protein sequence |