AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048250.t1 MTR_2g026715 88.889 333 24 1 1 333 1 320 0.0 621
MS.gene048250.t1 MTR_2g026715 93.534 232 15 0 1 232 1 232 2.46e-164 457
MS.gene048250.t1 MTR_4g133945 72.662 278 70 4 59 333 3 277 9.88e-152 427
MS.gene048250.t1 MTR_3g460790 58.672 271 112 0 62 332 16 286 2.66e-116 338
MS.gene048250.t1 MTR_8g091995 59.843 254 99 2 72 324 19 270 2.88e-111 325
MS.gene048250.t1 MTR_3g082770 52.362 254 119 1 71 324 80 331 3.46e-104 309
MS.gene048250.t1 MTR_3g460790 62.085 211 80 0 62 272 16 226 1.49e-94 281
MS.gene048250.t1 MTR_4g100480 47.842 278 144 1 56 332 76 353 1.97e-94 285
MS.gene048250.t1 MTR_0446s0020 66.667 66 21 1 269 333 2 67 1.44e-25 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048250.t1 AT5G47650 61.069 262 100 1 71 332 19 278 8.31e-121 349
MS.gene048250.t1 AT5G47650 61.069 262 100 1 71 332 19 278 8.31e-121 349
MS.gene048250.t1 AT5G47650 61.069 262 100 1 71 332 19 278 8.31e-121 349
MS.gene048250.t1 AT5G47650 61.069 262 100 1 71 332 66 325 5.90e-120 348
MS.gene048250.t1 AT5G47650 61.069 262 100 1 71 332 65 324 6.72e-120 348
MS.gene048250.t1 AT4G25434 57.647 255 108 0 70 324 18 272 1.60e-106 313
MS.gene048250.t1 AT4G25434 56.078 255 107 1 70 324 18 267 7.34e-101 298
MS.gene048250.t1 AT4G25434 52.482 282 107 1 70 324 18 299 1.05e-100 299
MS.gene048250.t1 AT4G12720 51.119 268 128 3 65 330 4 270 2.11e-96 287
MS.gene048250.t1 AT4G12720 51.119 268 128 3 65 330 4 270 2.11e-96 287
MS.gene048250.t1 AT4G12720 51.119 268 128 3 65 330 4 270 2.11e-96 287
MS.gene048250.t1 AT4G25434 51.064 282 106 2 70 324 18 294 2.64e-95 285
MS.gene048250.t1 AT5G47240 49.442 269 130 3 58 324 86 350 3.23e-90 274
MS.gene048250.t1 AT4G25434 62.814 199 74 0 70 268 18 216 3.95e-89 266
MS.gene048250.t1 AT4G12720 44.481 308 128 4 65 330 4 310 1.93e-88 268
MS.gene048250.t1 AT2G04450 49.057 265 131 4 63 324 2 265 1.11e-86 262
MS.gene048250.t1 AT5G47240 44.966 298 129 4 58 324 86 379 2.52e-84 260
MS.gene048250.t1 AT4G25434 55.752 226 73 1 70 268 18 243 7.83e-84 254
MS.gene048250.t1 AT4G25434 60.804 199 73 1 70 268 18 211 1.10e-83 252
MS.gene048250.t1 AT4G25434 58.462 195 81 0 130 324 33 227 2.41e-81 247
MS.gene048250.t1 AT4G25434 58.462 195 81 0 130 324 33 227 2.41e-81 247
MS.gene048250.t1 AT2G04430 44.981 269 141 4 68 331 7 273 8.75e-81 247
MS.gene048250.t1 AT2G04430 44.981 269 141 4 68 331 26 292 1.98e-80 247
MS.gene048250.t1 AT4G12720 55.941 202 87 2 65 264 4 205 6.60e-79 240
MS.gene048250.t1 AT4G25434 56.410 195 80 1 130 324 33 222 7.89e-76 233
MS.gene048250.t1 AT4G25434 60.355 169 67 0 70 238 18 186 1.31e-70 219
MS.gene048250.t1 AT4G25434 50.725 207 75 1 145 324 1 207 4.62e-67 210
MS.gene048250.t1 AT4G25434 52.551 196 66 1 70 238 18 213 4.36e-65 206
MS.gene048250.t1 AT4G12720 50.000 188 91 3 145 330 1 187 2.23e-61 195
MS.gene048250.t1 AT2G04440 46.575 146 76 1 63 206 2 147 3.69e-44 151

Find 70 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACAAGCATTAAATATTT+TGG 0.133502 2.3:-62564754 None:intergenic
GGAAAATAGTGGACTATTTC+AGG 0.142281 2.3:+62565022 MS.gene048250:CDS
GAGAAGATAATTGAGAATTT+TGG 0.171118 2.3:-62563762 None:intergenic
ATAGGTTGATTCAGAATTTC+TGG 0.172583 2.3:+62565320 MS.gene048250:intron
GGAATAGTATTTGGACTTTC+AGG 0.173194 2.3:-62564784 None:intergenic
TGCAAGATAACGAGAATTAT+TGG 0.203640 2.3:-62563790 None:intergenic
GCATTTGCAGGAATAGTATT+TGG 0.212021 2.3:-62564793 None:intergenic
ACTTCAAAATATCAGTCTTT+TGG 0.268444 2.3:-62566393 None:intergenic
AAGATGGATGGGCGATATTC+TGG 0.271028 2.3:+62566439 MS.gene048250:CDS
TTCTGGAAGTATTAGCATTC+AGG 0.309877 2.3:+62565337 MS.gene048250:CDS
ATCTTAGGTACTAGTTGTTC+AGG 0.313041 2.3:+62565001 MS.gene048250:intron
TATTTCAGGGAACTGGAGTT+TGG 0.329206 2.3:+62565036 MS.gene048250:CDS
AATATTTAATGCTTGTGTAT+TGG 0.331420 2.3:+62564758 MS.gene048250:CDS
CGATATTTGTTTGGCTAAGA+TGG 0.346862 2.3:+62566423 MS.gene048250:CDS
TGCAGGGCAAGAAGGGAGTT+TGG 0.356585 2.3:+62564535 MS.gene048250:intron
ACCCTGTGTGTGGCATTTGC+AGG 0.375917 2.3:-62564805 None:intergenic
GTACATGAACGATATTTGTT+TGG 0.379153 2.3:+62566414 MS.gene048250:CDS
AAGTTTGATAATGTAGATAC+TGG 0.404746 2.3:-62566469 None:intergenic
AGTGGACTATTTCAGGGAAC+TGG 0.415432 2.3:+62565029 MS.gene048250:CDS
AGTGCAGAGGTCAGAGATAG+AGG 0.417005 2.3:+62565703 MS.gene048250:CDS
CTATCTCTGACCTCTGCACT+TGG 0.417708 2.3:-62565700 None:intergenic
TATTCTTTATGTGTATGTTA+CGG 0.420564 2.3:+62565660 MS.gene048250:CDS
ACATCAACCGATGATAAGTA+TGG 0.442025 2.3:+62564087 MS.gene048250:CDS
CTTCAGCAAGACCGACTAGA+TGG 0.444644 2.3:-62564572 None:intergenic
CCCTACTGGAGTTGTTGATC+AGG 0.445398 2.3:+62565064 MS.gene048250:CDS
ATTAAAACACCCACTTCAAA+AGG 0.462920 2.3:+62563858 MS.gene048250:CDS
CACTTGGATCTCAGACGAAA+GGG 0.464839 2.3:-62565684 None:intergenic
TGTGGAGCTTGATCAGCCTA+TGG 0.468731 2.3:+62564119 MS.gene048250:CDS
GCGGTTGACATGCATCGAAT+AGG 0.469119 2.3:-62564030 None:intergenic
CAATAGTGTTACCTTAACTA+AGG 0.470543 2.3:-62564595 None:intergenic
GTCAGAGATAGAGGGTGCAC+AGG 0.487803 2.3:+62565712 MS.gene048250:CDS
ATTTGTTTGGCTAAGATGGA+TGG 0.489246 2.3:+62566427 MS.gene048250:CDS
TAAATCTGACTTCTCAAAGA+AGG 0.503504 2.3:-62565639 None:intergenic
GGAGTTTGGAAATTCCCTAC+TGG 0.504272 2.3:+62565050 MS.gene048250:CDS
GAAAATAGTGGACTATTTCA+GGG 0.507425 2.3:+62565023 MS.gene048250:CDS
CTAGTTGTTCAGGAAAATAG+TGG 0.509297 2.3:+62565011 MS.gene048250:CDS
TATTATATGTACTTGAATGC+TGG 0.510440 2.3:+62566505 MS.gene048250:CDS
GTTGTCTTGCAGGGCAAGAA+GGG 0.510569 2.3:+62564528 MS.gene048250:intron
ACTGCAGTGGATGCCATTTG+TGG 0.515009 2.3:+62566348 MS.gene048250:intron
TCTTGCTGAAGCCTTAGTTA+AGG 0.518721 2.3:+62564584 MS.gene048250:CDS
TGTTGTCTTGCAGGGCAAGA+AGG 0.521293 2.3:+62564527 MS.gene048250:intron
AGAGAGGTCAAAGAAGAGAC+AGG 0.538041 2.3:+62565202 MS.gene048250:CDS
TGAGACGCGTATTCCACAAA+TGG 0.538269 2.3:-62566361 None:intergenic
TTTGTTTGGCTAAGATGGAT+GGG 0.543258 2.3:+62566428 MS.gene048250:CDS
TGAATGCTGGAGCATTGAAA+AGG 0.556559 2.3:+62566518 MS.gene048250:CDS
GCACTTGGATCTCAGACGAA+AGG 0.574989 2.3:-62565685 None:intergenic
AAATTACCTATCCATCTAGT+CGG 0.581467 2.3:+62564561 MS.gene048250:CDS
GCAAATGCCACACACAGGGT+TGG 0.588572 2.3:+62564808 MS.gene048250:CDS
GCCACACACAGGGTTGGCGT+TGG 0.590682 2.3:+62564814 MS.gene048250:CDS
GCAAGACCGACTAGATGGAT+AGG 0.593880 2.3:-62564567 None:intergenic
ACCTGATCAACAACTCCAGT+AGG 0.596031 2.3:-62565065 None:intergenic
GTGCAGAGGTCAGAGATAGA+GGG 0.598275 2.3:+62565704 MS.gene048250:CDS
TTCCTGCAAATGCCACACAC+AGG 0.601163 2.3:+62564803 MS.gene048250:CDS
TAAGTATGGCGGCGTTATTG+TGG 0.606216 2.3:+62564101 MS.gene048250:CDS
CCTGATCAACAACTCCAGTA+GGG 0.608982 2.3:-62565064 None:intergenic
TTATATCTTCATGTAGAACA+AGG 0.611389 2.3:+62563829 MS.gene048250:CDS
TCCTGCAAATGCCACACACA+GGG 0.616524 2.3:+62564804 MS.gene048250:CDS
AGAAGATATTTGCGTAGCAG+CGG 0.617995 2.3:+62565177 MS.gene048250:CDS
ACGAATGTAGTCGAATCCAT+AGG 0.621160 2.3:-62564135 None:intergenic
TTGCGTAGCAGCGGTAAGAG+AGG 0.623662 2.3:+62565186 MS.gene048250:CDS
TTGAACTTGATCTTCTGCCG+CGG 0.625446 2.3:-62564049 None:intergenic
TAAGATTGGAGTGTCATCCA+CGG 0.636159 2.3:+62564005 MS.gene048250:CDS
ACTTGGATCTCAGACGAAAG+GGG 0.640184 2.3:-62565683 None:intergenic
AACGCCGCCATACTTATCAT+CGG 0.651332 2.3:-62564094 None:intergenic
CGGCAGAAGATCAAGTTCAA+CGG 0.658111 2.3:+62564052 MS.gene048250:CDS
CGTCTGAGATCCAAGTGCAG+AGG 0.669999 2.3:+62565690 MS.gene048250:CDS
TATTCGATGCATGTCAACCG+CGG 0.688175 2.3:+62564032 MS.gene048250:CDS
CATGCATCGAATAGGAACCG+TGG 0.694483 2.3:-62564022 None:intergenic
ACCAACGCCAACCCTGTGTG+TGG 0.703574 2.3:-62564815 None:intergenic
TCAACCGATGATAAGTATGG+CGG 0.745097 2.3:+62564090 MS.gene048250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATTGAAAAATGAAAA+AGG - chr2.3:62566256-62566275 None:intergenic 15.0%
!! ATATCATCTTATACAAAAAT+AGG - chr2.3:62565116-62565135 None:intergenic 15.0%
!! ATATTATCAATGATTGAAAA+AGG + chr2.3:62565378-62565397 MS.gene048250:intron 15.0%
!! TATTATCAATGATTGAAAAA+GGG + chr2.3:62565379-62565398 MS.gene048250:intron 15.0%
!!! TTATGATGATTATGTTTTTT+TGG + chr2.3:62563899-62563918 MS.gene048250:intron 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG + chr2.3:62565782-62565801 MS.gene048250:intron 15.0%
!! AATATTTAATGCTTGTGTAT+TGG + chr2.3:62564758-62564777 MS.gene048250:CDS 20.0%
!! AATGATATTAGCCAAAAAAA+TGG - chr2.3:62565450-62565469 None:intergenic 20.0%
!! ACAATTGAGTTATTTATGTT+TGG + chr2.3:62564408-62564427 MS.gene048250:intron 20.0%
!! ATTATCAATGATTGAAAAAG+GGG + chr2.3:62565380-62565399 MS.gene048250:intron 20.0%
!! ATTGCTTACCATATTAATAA+TGG + chr2.3:62564614-62564633 MS.gene048250:intron 20.0%
!! TATTCTTTATGTGTATGTTA+CGG + chr2.3:62565660-62565679 MS.gene048250:CDS 20.0%
!! TCTATCTTAAATCCATTATT+GGG + chr2.3:62565897-62565916 MS.gene048250:intron 20.0%
!! TTGTTTAGTATTCAATAACA+AGG - chr2.3:62564874-62564893 None:intergenic 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG - chr2.3:62566070-62566089 None:intergenic 20.0%
!!! ATTATTTCTTTAAAGTTTCC+TGG + chr2.3:62565537-62565556 MS.gene048250:intron 20.0%
!!! TAATGCTATGATATCATTTT+AGG - chr2.3:62566077-62566096 None:intergenic 20.0%
!!! TACACAAGCATTAAATATTT+TGG - chr2.3:62564757-62564776 None:intergenic 20.0%
! AACACGTAAATACTAGATTA+AGG - chr2.3:62566183-62566202 None:intergenic 25.0%
! ACACGTAAATACTAGATTAA+GGG - chr2.3:62566182-62566201 None:intergenic 25.0%
! ACATTGAAAAATGAAAAAGG+AGG - chr2.3:62566253-62566272 None:intergenic 25.0%
! AGAAATAAACAAATGTTCCA+AGG - chr2.3:62565491-62565510 None:intergenic 25.0%
! CAACAGAACCATTATTAATA+TGG - chr2.3:62564625-62564644 None:intergenic 25.0%
! CATTGAAAAATGAAAAAGGA+GGG - chr2.3:62566252-62566271 None:intergenic 25.0%
! CTACTTATTTAACCAATACA+GGG + chr2.3:62565154-62565173 MS.gene048250:intron 25.0%
! GTCTATCTTAAATCCATTAT+TGG + chr2.3:62565896-62565915 MS.gene048250:intron 25.0%
! TAATCAAGCTTGTAGTTAAT+TGG + chr2.3:62564899-62564918 MS.gene048250:intron 25.0%
! TAGAAGAAAACATTAAGTGA+TGG - chr2.3:62565851-62565870 None:intergenic 25.0%
! TAGTATTTACGTGTTTAGTT+AGG + chr2.3:62566188-62566207 MS.gene048250:intron 25.0%
! TATTATATGTACTTGAATGC+TGG + chr2.3:62566505-62566524 MS.gene048250:CDS 25.0%
! TGAAAAATGCATGATGAAAT+AGG + chr2.3:62564272-62564291 MS.gene048250:intron 25.0%
! TTATATCTTCATGTAGAACA+AGG + chr2.3:62563829-62563848 MS.gene048250:CDS 25.0%
! TTGAATCTTTAGGTAGTTAT+TGG + chr2.3:62564946-62564965 MS.gene048250:intron 25.0%
! TTGAGTTATTTATGTTTGGA+TGG + chr2.3:62564412-62564431 MS.gene048250:intron 25.0%
! TTGATCAGATATTCATATGA+AGG - chr2.3:62565602-62565621 None:intergenic 25.0%
!! ACTTCAAAATATCAGTCTTT+TGG - chr2.3:62566396-62566415 None:intergenic 25.0%
!! CATTGTTATTCATCAATCTT+AGG + chr2.3:62564986-62565005 MS.gene048250:intron 25.0%
!! GAGAAGATAATTGAGAATTT+TGG - chr2.3:62563765-62563784 None:intergenic 25.0%
!! TTTTCCTTACTAGTTAAGAT+TGG + chr2.3:62563991-62564010 MS.gene048250:intron 25.0%
!!! AAGTTTGATAATGTAGATAC+TGG - chr2.3:62566472-62566491 None:intergenic 25.0%
!!! ATCTGTCACGAATTTTTTAT+TGG + chr2.3:62564490-62564509 MS.gene048250:intron 25.0%
!!! ATGGTTTTACTCTAAATGTT+TGG + chr2.3:62564431-62564450 MS.gene048250:intron 25.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG + chr2.3:62565302-62565321 MS.gene048250:intron 25.0%
!!! TATTGACATGTCCATTTTTT+TGG + chr2.3:62565436-62565455 MS.gene048250:intron 25.0%
AAATGCATGAAATTGATGCA+TGG - chr2.3:62564688-62564707 None:intergenic 30.0%
AAATTACCTATCCATCTAGT+CGG + chr2.3:62564561-62564580 MS.gene048250:CDS 30.0%
ATTAAAACACCCACTTCAAA+AGG + chr2.3:62563858-62563877 MS.gene048250:CDS 30.0%
ATTAAGTGATGGCTTAATGA+AGG - chr2.3:62565840-62565859 None:intergenic 30.0%
CAATAGTGTTACCTTAACTA+AGG - chr2.3:62564598-62564617 None:intergenic 30.0%
CACGTAAATACTAGATTAAG+GGG - chr2.3:62566181-62566200 None:intergenic 30.0%
CCTACTTATTTAACCAATAC+AGG + chr2.3:62565153-62565172 MS.gene048250:intron 30.0%
GAAGTTTGGTTAATGAAGAT+TGG + chr2.3:62564646-62564665 MS.gene048250:intron 30.0%
GGTATGTTAGTTATAGTTCA+AGG + chr2.3:62565733-62565752 MS.gene048250:intron 30.0%
GTACATGAACGATATTTGTT+TGG + chr2.3:62566414-62566433 MS.gene048250:CDS 30.0%
TAAATCAATGTTGTCTTGCA+GGG + chr2.3:62564519-62564538 MS.gene048250:intron 30.0%
TAAATCTGACTTCTCAAAGA+AGG - chr2.3:62565642-62565661 None:intergenic 30.0%
TGCAAGATAACGAGAATTAT+TGG - chr2.3:62563793-62563812 None:intergenic 30.0%
TGGCTAATATCATTGTCTAT+GGG + chr2.3:62565456-62565475 MS.gene048250:intron 30.0%
TTCAAACTAAGCAATGTTTC+TGG + chr2.3:62565757-62565776 MS.gene048250:intron 30.0%
TTGGCTAATATCATTGTCTA+TGG + chr2.3:62565455-62565474 MS.gene048250:intron 30.0%
TTTACGATTCTTTCTATGAC+AGG + chr2.3:62564705-62564724 MS.gene048250:intron 30.0%
!! ATAGGTTGATTCAGAATTTC+TGG + chr2.3:62565320-62565339 MS.gene048250:intron 30.0%
!! CCTGTATTGGTTAAATAAGT+AGG - chr2.3:62565156-62565175 None:intergenic 30.0%
!! GAAAATAGTGGACTATTTCA+GGG + chr2.3:62565023-62565042 MS.gene048250:CDS 30.0%
AAGAACCAAGAGTTAAATGC+CGG - chr2.3:62565292-62565311 None:intergenic 35.0%
AATGCTGTACAATTACATGC+GGG + chr2.3:62565238-62565257 MS.gene048250:intron 35.0%
ACATCAACCGATGATAAGTA+TGG + chr2.3:62564087-62564106 MS.gene048250:CDS 35.0%
AGAATGCACATAGTAGAAGT+TGG - chr2.3:62566220-62566239 None:intergenic 35.0%
ATCTTAGGTACTAGTTGTTC+AGG + chr2.3:62565001-62565020 MS.gene048250:intron 35.0%
ATTTGTTTGGCTAAGATGGA+TGG + chr2.3:62566427-62566446 MS.gene048250:CDS 35.0%
CAAATATCTTCTCCCTGTAT+TGG - chr2.3:62565169-62565188 None:intergenic 35.0%
CAATGCTGTACAATTACATG+CGG + chr2.3:62565237-62565256 MS.gene048250:intron 35.0%
CACTCCAATCTTAACTAGTA+AGG - chr2.3:62563998-62564017 None:intergenic 35.0%
CGATATTTGTTTGGCTAAGA+TGG + chr2.3:62566423-62566442 MS.gene048250:CDS 35.0%
CTAGTTGTTCAGGAAAATAG+TGG + chr2.3:62565011-62565030 MS.gene048250:CDS 35.0%
CTTCAAAAGGTAGTTGCTTA+AGG + chr2.3:62563871-62563890 MS.gene048250:intron 35.0%
GAAGAATTGATATCTGCCTA+AGG - chr2.3:62566316-62566335 None:intergenic 35.0%
GCATTTGCAGGAATAGTATT+TGG - chr2.3:62564796-62564815 None:intergenic 35.0%
GGAATAGTATTTGGACTTTC+AGG - chr2.3:62564787-62564806 None:intergenic 35.0%
GTAAATCAATGTTGTCTTGC+AGG + chr2.3:62564518-62564537 MS.gene048250:intron 35.0%
TAAATGCTTGACAAGAATCC+AGG - chr2.3:62565558-62565577 None:intergenic 35.0%
TCAGGTAAATGTGTTGGATA+TGG + chr2.3:62565082-62565101 MS.gene048250:intron 35.0%
TGAAAAAGGGGACTTCAAAT+TGG + chr2.3:62565392-62565411 MS.gene048250:intron 35.0%
TGAAGGAAAGAGGAAGAAAA+TGG - chr2.3:62565823-62565842 None:intergenic 35.0%
TGTCATGAATGAAAAACACG+AGG + chr2.3:62564843-62564862 MS.gene048250:CDS 35.0%
TGTTGATCAGGTAAATGTGT+TGG + chr2.3:62565076-62565095 MS.gene048250:intron 35.0%
TGTTTCCTTCTAACAAGCAT+TGG - chr2.3:62564314-62564333 None:intergenic 35.0%
TTACGTGTTTAGTTAGGCAT+GGG + chr2.3:62566194-62566213 MS.gene048250:intron 35.0%
TTCTACTATGTGCATTCTGA+AGG + chr2.3:62566222-62566241 MS.gene048250:intron 35.0%
TTTACGTGTTTAGTTAGGCA+TGG + chr2.3:62566193-62566212 MS.gene048250:intron 35.0%
TTTGTTTGGCTAAGATGGAT+GGG + chr2.3:62566428-62566447 MS.gene048250:CDS 35.0%
! AATGGTTCTGTTGAGAAGTT+TGG + chr2.3:62564632-62564651 MS.gene048250:intron 35.0%
! ATATCAGTCTTTTGGACGAA+TGG - chr2.3:62566388-62566407 None:intergenic 35.0%
! CGTATTTTTCTTTACTGCAG+TGG + chr2.3:62566335-62566354 MS.gene048250:intron 35.0%
! TGCGAGTTGTGATATTGATT+TGG + chr2.3:62564383-62564402 MS.gene048250:intron 35.0%
! TTAGAGCTTCGATTTTACAC+TGG + chr2.3:62564166-62564185 MS.gene048250:CDS 35.0%
! TTCATCCAATGCTTGTTAGA+AGG + chr2.3:62564306-62564325 MS.gene048250:intron 35.0%
! TTCTATGACAGGAAGGTTTT+TGG + chr2.3:62564716-62564735 MS.gene048250:intron 35.0%
!! GGAAAATAGTGGACTATTTC+AGG + chr2.3:62565022-62565041 MS.gene048250:CDS 35.0%
!! TAAGCAACTACCTTTTGAAG+TGG - chr2.3:62563871-62563890 None:intergenic 35.0%
!! TTCTGGAAGTATTAGCATTC+AGG + chr2.3:62565337-62565356 MS.gene048250:CDS 35.0%
!!! AAGCAACTACCTTTTGAAGT+GGG - chr2.3:62563870-62563889 None:intergenic 35.0%
AAAAGGGGACTTCAAATTGG+AGG + chr2.3:62565395-62565414 MS.gene048250:intron 40.0%
ACGAATGTAGTCGAATCCAT+AGG - chr2.3:62564138-62564157 None:intergenic 40.0%
AGAAGATATTTGCGTAGCAG+CGG + chr2.3:62565177-62565196 MS.gene048250:CDS 40.0%
CGATTCTTTCTATGACAGGA+AGG + chr2.3:62564709-62564728 MS.gene048250:intron 40.0%
CGTTTGAGGGTTGAATCTTT+AGG + chr2.3:62564936-62564955 MS.gene048250:intron 40.0%
CTTGAAAGGAGAGTTGAGTT+AGG + chr2.3:62566125-62566144 MS.gene048250:intron 40.0%
GACTTCAAATTGGAGGTAGA+AGG + chr2.3:62565402-62565421 MS.gene048250:intron 40.0%
GATGGCTTAATGAAGGAAAG+AGG - chr2.3:62565833-62565852 None:intergenic 40.0%
GCAATCTTCACCTTACAAGT+CGG + chr2.3:62566029-62566048 MS.gene048250:intron 40.0%
GTAAGGTGAAGATTGCCTAA+GGG - chr2.3:62566025-62566044 None:intergenic 40.0%
TATTTCAGGGAACTGGAGTT+TGG + chr2.3:62565036-62565055 MS.gene048250:CDS 40.0%
TCAACCGATGATAAGTATGG+CGG + chr2.3:62564090-62564109 MS.gene048250:CDS 40.0%
TCTTGCTGAAGCCTTAGTTA+AGG + chr2.3:62564584-62564603 MS.gene048250:CDS 40.0%
TGTAAGGTGAAGATTGCCTA+AGG - chr2.3:62566026-62566045 None:intergenic 40.0%
! CAAGTCGGTTTCATGGAATT+AGG + chr2.3:62566044-62566063 MS.gene048250:intron 40.0%
! GATTTTACACTGGAAGCAGA+TGG + chr2.3:62564176-62564195 MS.gene048250:CDS 40.0%
! TAAGATTGGAGTGTCATCCA+CGG + chr2.3:62564005-62564024 MS.gene048250:CDS 40.0%
! TTGAGAGTGTACTGTACCTT+AGG + chr2.3:62566297-62566316 MS.gene048250:intron 40.0%
!! TGAATGCTGGAGCATTGAAA+AGG + chr2.3:62566518-62566537 MS.gene048250:CDS 40.0%
!! TTCCATGAAACCGACTTGTA+AGG - chr2.3:62566042-62566061 None:intergenic 40.0%
AAACAGACCCTAAGCTTGGA+TGG - chr2.3:62565923-62565942 None:intergenic 45.0%
AACGCCGCCATACTTATCAT+CGG - chr2.3:62564097-62564116 None:intergenic 45.0%
AAGATGGATGGGCGATATTC+TGG + chr2.3:62566439-62566458 MS.gene048250:CDS 45.0%
AAGCTTGGATGGCCCAATAA+TGG - chr2.3:62565912-62565931 None:intergenic 45.0%
ACCTGATCAACAACTCCAGT+AGG - chr2.3:62565068-62565087 None:intergenic 45.0%
ACTTGGATCTCAGACGAAAG+GGG - chr2.3:62565686-62565705 None:intergenic 45.0%
AGAGAGGTCAAAGAAGAGAC+AGG + chr2.3:62565202-62565221 MS.gene048250:CDS 45.0%
AGTACTGCCTTGACGTTTGA+GGG + chr2.3:62564923-62564942 MS.gene048250:intron 45.0%
ATCCAAGCTTAGGGTCTGTT+TGG + chr2.3:62565922-62565941 MS.gene048250:intron 45.0%
CAAGAGTTAAATGCCGGTAG+AGG - chr2.3:62565286-62565305 None:intergenic 45.0%
CACTTGGATCTCAGACGAAA+GGG - chr2.3:62565687-62565706 None:intergenic 45.0%
CCTGATCAACAACTCCAGTA+GGG - chr2.3:62565067-62565086 None:intergenic 45.0%
CGGCAGAAGATCAAGTTCAA+CGG + chr2.3:62564052-62564071 MS.gene048250:CDS 45.0%
CTCTACCGGCATTTAACTCT+TGG + chr2.3:62565284-62565303 MS.gene048250:intron 45.0%
GATTCAACCCTCAAACGTCA+AGG - chr2.3:62564933-62564952 None:intergenic 45.0%
GGAGTTTGGAAATTCCCTAC+TGG + chr2.3:62565050-62565069 MS.gene048250:CDS 45.0%
GTCTGTTTGGGAGTTTAGGA+GGG + chr2.3:62565935-62565954 MS.gene048250:intron 45.0%
TAAGTATGGCGGCGTTATTG+TGG + chr2.3:62564101-62564120 MS.gene048250:CDS 45.0%
TAGAGGAACTGGAATCCACA+TGG - chr2.3:62565269-62565288 None:intergenic 45.0%
TAGGGTCTGTTTGGGAGTTT+AGG + chr2.3:62565931-62565950 MS.gene048250:intron 45.0%
TATCCAGTCTCGAGCTTGAA+AGG + chr2.3:62566111-62566130 MS.gene048250:intron 45.0%
TATTCGATGCATGTCAACCG+CGG + chr2.3:62564032-62564051 MS.gene048250:CDS 45.0%
TATTGGGCCATCCAAGCTTA+GGG + chr2.3:62565913-62565932 MS.gene048250:intron 45.0%
TCCAAGCTTAGGGTCTGTTT+GGG + chr2.3:62565923-62565942 MS.gene048250:intron 45.0%
TCTATGGGAGAATGTGTCCT+TGG + chr2.3:62565471-62565490 MS.gene048250:intron 45.0%
TCTGTTTGGGAGTTTAGGAG+GGG + chr2.3:62565936-62565955 MS.gene048250:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG - chr2.3:62566364-62566383 None:intergenic 45.0%
TTAAATGCCGGTAGAGGAAC+TGG - chr2.3:62565280-62565299 None:intergenic 45.0%
TTATTGGGCCATCCAAGCTT+AGG + chr2.3:62565912-62565931 MS.gene048250:intron 45.0%
TTGAACTTGATCTTCTGCCG+CGG - chr2.3:62564052-62564071 None:intergenic 45.0%
! AAGTACTGCCTTGACGTTTG+AGG + chr2.3:62564922-62564941 MS.gene048250:intron 45.0%
! CACCTTACAAGTCGGTTTCA+TGG + chr2.3:62566037-62566056 MS.gene048250:intron 45.0%
!! AGTGGACTATTTCAGGGAAC+TGG + chr2.3:62565029-62565048 MS.gene048250:CDS 45.0%
AAACTCCCAAACAGGCCCTT+AGG + chr2.3:62566007-62566026 MS.gene048250:intron 50.0%
AGATTGCCTAAGGGCCTGTT+TGG - chr2.3:62566016-62566035 None:intergenic 50.0%
AGTGCAGAGGTCAGAGATAG+AGG + chr2.3:62565703-62565722 MS.gene048250:CDS 50.0%
CATGCATCGAATAGGAACCG+TGG - chr2.3:62564025-62564044 None:intergenic 50.0%
CCCTACTGGAGTTGTTGATC+AGG + chr2.3:62565064-62565083 MS.gene048250:CDS 50.0%
CTATCTCTGACCTCTGCACT+TGG - chr2.3:62565703-62565722 None:intergenic 50.0%
CTTCAGCAAGACCGACTAGA+TGG - chr2.3:62564575-62564594 None:intergenic 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG + chr2.3:62565945-62565964 MS.gene048250:intron 50.0%
GATTGCCTAAGGGCCTGTTT+GGG - chr2.3:62566015-62566034 None:intergenic 50.0%
GCAAGACCGACTAGATGGAT+AGG - chr2.3:62564570-62564589 None:intergenic 50.0%
GCACTTGGATCTCAGACGAA+AGG - chr2.3:62565688-62565707 None:intergenic 50.0%
GCGGTTGACATGCATCGAAT+AGG - chr2.3:62564033-62564052 None:intergenic 50.0%
GGTCTGTTTGGGAGTTTAGG+AGG + chr2.3:62565934-62565953 MS.gene048250:intron 50.0%
GTGCAGAGGTCAGAGATAGA+GGG + chr2.3:62565704-62565723 MS.gene048250:CDS 50.0%
GTGGATTCCAGTTCCTCTAC+CGG + chr2.3:62565270-62565289 MS.gene048250:intron 50.0%
GTTGTCTTGCAGGGCAAGAA+GGG + chr2.3:62564528-62564547 MS.gene048250:intron 50.0%
TAAGGGCCTGTTTGGGAGTT+TGG - chr2.3:62566008-62566027 None:intergenic 50.0%
TCCCAAACAGACCCTAAGCT+TGG - chr2.3:62565927-62565946 None:intergenic 50.0%
TCCTGCAAATGCCACACACA+GGG + chr2.3:62564804-62564823 MS.gene048250:CDS 50.0%
TCTCCTTTCAAGCTCGAGAC+TGG - chr2.3:62566117-62566136 None:intergenic 50.0%
TGTGGAGCTTGATCAGCCTA+TGG + chr2.3:62564119-62564138 MS.gene048250:CDS 50.0%
TGTTGTCTTGCAGGGCAAGA+AGG + chr2.3:62564527-62564546 MS.gene048250:intron 50.0%
TTCCTGCAAATGCCACACAC+AGG + chr2.3:62564803-62564822 MS.gene048250:CDS 50.0%
! ACTGCAGTGGATGCCATTTG+TGG + chr2.3:62566348-62566367 MS.gene048250:intron 50.0%
ACCCTGTGTGTGGCATTTGC+AGG - chr2.3:62564808-62564827 None:intergenic 55.0%
GCAAATGCCACACACAGGGT+TGG + chr2.3:62564808-62564827 MS.gene048250:CDS 55.0%
GCCTGTTTGGGAGTTTGGAG+GGG - chr2.3:62566003-62566022 None:intergenic 55.0%
GGAGTTTAGGAGGGGAGAAG+AGG + chr2.3:62565944-62565963 MS.gene048250:intron 55.0%
GGCCTGTTTGGGAGTTTGGA+GGG - chr2.3:62566004-62566023 None:intergenic 55.0%
TCCCCTCCAAACTCCCAAAC+AGG + chr2.3:62565999-62566018 MS.gene048250:intron 55.0%
TGCAGGGCAAGAAGGGAGTT+TGG + chr2.3:62564535-62564554 MS.gene048250:intron 55.0%
TTGCGTAGCAGCGGTAAGAG+AGG + chr2.3:62565186-62565205 MS.gene048250:CDS 55.0%
! AGCGAAGGACTTTGGGGGAA+GGG - chr2.3:62565980-62565999 None:intergenic 55.0%
! CGTCTGAGATCCAAGTGCAG+AGG + chr2.3:62565690-62565709 MS.gene048250:CDS 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG + chr2.3:62565712-62565731 MS.gene048250:CDS 55.0%
!! TACATGCGGGCTAGTCCATG+TGG + chr2.3:62565251-62565270 MS.gene048250:intron 55.0%
ACCAACGCCAACCCTGTGTG+TGG - chr2.3:62564818-62564837 None:intergenic 60.0%
AGGAGGGGAGAAGAGGGCTA+TGG + chr2.3:62565951-62565970 MS.gene048250:intron 60.0%
AGGGGAGCGAAGGACTTTGG+GGG - chr2.3:62565985-62566004 None:intergenic 60.0%
GAGGGGAGCGAAGGACTTTG+GGG - chr2.3:62565986-62566005 None:intergenic 60.0%
GGAGGGGAGAAGAGGGCTAT+GGG + chr2.3:62565952-62565971 MS.gene048250:intron 60.0%
GGAGGGGAGCGAAGGACTTT+GGG - chr2.3:62565987-62566006 None:intergenic 60.0%
GGGCCTGTTTGGGAGTTTGG+AGG - chr2.3:62566005-62566024 None:intergenic 60.0%
TGGAGGGGAGCGAAGGACTT+TGG - chr2.3:62565988-62566007 None:intergenic 60.0%
! GAGCGAAGGACTTTGGGGGA+AGG - chr2.3:62565981-62566000 None:intergenic 60.0%
! GCGAAGGACTTTGGGGGAAG+GGG - chr2.3:62565979-62565998 None:intergenic 60.0%
GGGAGTTTGGAGGGGAGCGA+AGG - chr2.3:62565995-62566014 None:intergenic 65.0%
! GCCACACACAGGGTTGGCGT+TGG + chr2.3:62564814-62564833 MS.gene048250:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 62563747 62566552 62563747 ID=MS.gene048250
chr2.3 mRNA 62563747 62566552 62563747 ID=MS.gene048250.t1;Parent=MS.gene048250
chr2.3 exon 62563747 62563879 62563747 ID=MS.gene048250.t1.exon1;Parent=MS.gene048250.t1
chr2.3 CDS 62563747 62563879 62563747 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62564004 62564197 62564004 ID=MS.gene048250.t1.exon2;Parent=MS.gene048250.t1
chr2.3 CDS 62564004 62564197 62564004 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62564540 62564605 62564540 ID=MS.gene048250.t1.exon3;Parent=MS.gene048250.t1
chr2.3 CDS 62564540 62564605 62564540 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62564727 62564864 62564727 ID=MS.gene048250.t1.exon4;Parent=MS.gene048250.t1
chr2.3 CDS 62564727 62564864 62564727 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62565008 62565085 62565008 ID=MS.gene048250.t1.exon5;Parent=MS.gene048250.t1
chr2.3 CDS 62565008 62565085 62565008 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62565175 62565225 62565175 ID=MS.gene048250.t1.exon6;Parent=MS.gene048250.t1
chr2.3 CDS 62565175 62565225 62565175 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62565324 62565358 62565324 ID=MS.gene048250.t1.exon7;Parent=MS.gene048250.t1
chr2.3 CDS 62565324 62565358 62565324 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62565625 62565733 62565625 ID=MS.gene048250.t1.exon8;Parent=MS.gene048250.t1
chr2.3 CDS 62565625 62565733 62565625 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
chr2.3 exon 62566355 62566552 62566355 ID=MS.gene048250.t1.exon9;Parent=MS.gene048250.t1
chr2.3 CDS 62566355 62566552 62566355 ID=cds.MS.gene048250.t1;Parent=MS.gene048250.t1
Gene Sequence

>MS.gene048250

ATGCTTAGATCGCTTCCAAAATTCTCAATTATCTTCTCTTCAACCAATAATTCTCGTTATCTTGCAAATGCTACTCAACGCTTTATATCTTCATGTAGAACAAGGAGAATAATTAAAACACCCACTTCAAAAGGTAGTTGCTTAAGGAATGTTTATGATGATTATGTTTTTTTGGTTTCTTTAGAATTTCTAAAATAAACAAGCTAGTATTTTGTATATAGTCTAATATGTTTGTTTTTCTCATTTTTCCTTACTAGTTAAGATTGGAGTGTCATCCACGGTTCCTATTCGATGCATGTCAACCGCGGCAGAAGATCAAGTTCAACGGATTAAAGTACTAACATCAACCGATGATAAGTATGGCGGCGTTATTGTGGAGCTTGATCAGCCTATGGATTCGACTACATTCGTCTCAATTCTTAGAGCTTCGATTTTACACTGGAAGCAGATGGTAAGTTTTTCGCAACAGTTGTTTACAACGAATATTTTCATATTTGATTGCATTCATTGATGCAAACATAGTAGTGAAAAATGCATGATGAAATAGGTGTTATAAATTTTCATCCAATGCTTGTTAGAAGGAAACAAAATAAACACACATTTTGTGTGTTTGAGACTTTGAATAAATGCTTGACATGCGAGTTGTGATATTGATTTGGTTACAATTGAGTTATTTATGTTTGGATGGTTTTACTCTAAATGTTTGGATATTTTTATTCTTACATATGTGCTGAAAATTTAGAATCTGTCACGAATTTTTTATTGGAGTTAGTAAATCAATGTTGTCTTGCAGGGCAAGAAGGGAGTTTGGATAAAATTACCTATCCATCTAGTCGGTCTTGCTGAAGCCTTAGTTAAGGTAACACTATTGCTTACCATATTAATAATGGTTCTGTTGAGAAGTTTGGTTAATGAAGATTGGAGTTTTACTAATGTTGCCATGCATCAATTTCATGCATTTACGATTCTTTCTATGACAGGAAGGTTTTTGGTTTCATCATGCAGAACCAAAATATTTAATGCTTGTGTATTGGATTCCTGAAAGTCCAAATACTATTCCTGCAAATGCCACACACAGGGTTGGCGTTGGTTCATTTGTCATGAATGAAAAACACGAGGTATTTCCTTGTTATTGAATACTAAACAACTTCGTAATCAAGCTTGTAGTTAATTGGAAGTACTGCCTTGACGTTTGAGGGTTGAATCTTTAGGTAGTTATTGGCAGCTAATATCTTGTTTCATTGTTATTCATCAATCTTAGGTACTAGTTGTTCAGGAAAATAGTGGACTATTTCAGGGAACTGGAGTTTGGAAATTCCCTACTGGAGTTGTTGATCAGGTAAATGTGTTGGATATGGAAAGCTTTCCTATTTTTGTATAAGATGATATGCTGTGTGTATATATAACCTACTTATTTAACCAATACAGGGAGAAGATATTTGCGTAGCAGCGGTAAGAGAGGTCAAAGAAGAGACAGGAGTAAGTAATAACAATGCTGTACAATTACATGCGGGCTAGTCCATGTGGATTCCAGTTCCTCTACCGGCATTTAACTCTTGGTTCTTTCAATTTTATAGGTTGATTCAGAATTTCTGGAAGTATTAGCATTCAGGTAGCATACTTGTAAGAATATATTATCAATGATTGAAAAAGGGGACTTCAAATTGGAGGTAGAAGGTTCAAATCTCATATTGACATGTCCATTTTTTTGGCTAATATCATTGTCTATGGGAGAATGTGTCCTTGGAACATTTGTTTATTTCTAATTTTTCTTGATAAATTAGTAATCTATTATTTCTTTAAAGTTTCCTGGATTCTTGTCAAGCATTTATACGACTGAGCATTATTTTCTCCTTCATATGAATATCTGATCAACAGACAGAGTCACAATTCCTTCTTTGAGAAGTCAGATTTATTCTTTATGTGTATGTTACGGCCCCTTTCGTCTGAGATCCAAGTGCAGAGGTCAGAGATAGAGGGTGCACAGGTATGTTAGTTATAGTTCAAGGCTTCAAACTAAGCAATGTTTCTGGTTTTTAAAATGTTCAATACTTATGGTTCATAAATATATCACCATTTTCTTCCTCTTTCCTTCATTAAGCCATCACTTAATGTTTTCTTCTAACACTAAGACTGTATCTGTATCATTGTCTATCTTAAATCCATTATTGGGCCATCCAAGCTTAGGGTCTGTTTGGGAGTTTAGGAGGGGAGAAGAGGGCTATGGGACCCCTTCCCCCAAAGTCCTTCGCTCCCCTCCAAACTCCCAAACAGGCCCTTAGGCAATCTTCACCTTACAAGTCGGTTTCATGGAATTAGGCCTAAAACCTAAAATGATATCATAGCATTAATTAATGTTTTAGATATCCAGTCTCGAGCTTGAAAGGAGAGTTGAGTTAGGCGTGCGCAGAAAATAGAGCATGTGTCATCACCCCTTAATCTAGTATTTACGTGTTTAGTTAGGCATGGGCCAACTTCTACTATGTGCATTCTGAAGGCAAGCCCTCCTTTTTCATTTTTCAATGTTATTTCGCTTTATTACATACATGTTTGAGAGTGTACTGTACCTTAGGCAGATATCAATTCTTCGTATTTTTCTTTACTGCAGTGGATGCCATTTGTGGAATACGCGTCTCAGCCATTCGTCCAAAAGACTGATATTTTGAAGTACATGAACGATATTTGTTTGGCTAAGATGGATGGGCGATATTCTGGATATACTCCAGTATCTACATTATCAAACTTCTCAGAACAGCAGTATTATATGTACTTGAATGCTGGAGCATTGAAAAGGTCCAACTCTTGA

Protein sequence

>MS.gene048250.t1

MLRSLPKFSIIFSSTNNSRYLANATQRFISSCRTRRIIKTPTSKVKIGVSSTVPIRCMSTAAEDQVQRIKVLTSTDDKYGGVIVELDQPMDSTTFVSILRASILHWKQMGKKGVWIKLPIHLVGLAEALVKEGFWFHHAEPKYLMLVYWIPESPNTIPANATHRVGVGSFVMNEKHEVLVVQENSGLFQGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFLEVLAFRQSHNSFFEKSDLFFMCMLRPLSSEIQVQRSEIEGAQWMPFVEYASQPFVQKTDILKYMNDICLAKMDGRYSGYTPVSTLSNFSEQQYYMYLNAGALKRSNS