Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049005.t1 | XP_003630623.2 | 85.9 | 788 | 22 | 2 | 3 | 701 | 1 | 788 | 0.00E+00 | 1393.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049005.t1 | O04196 | 81.7 | 608 | 111 | 0 | 90 | 697 | 172 | 779 | 0.0e+00 | 1094.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049005.t1 | G7LIX1 | 85.9 | 788 | 22 | 2 | 3 | 701 | 1 | 788 | 0.0e+00 | 1393.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38584 | MS.gene049005 | PPI |
| MS.gene013128 | MS.gene049005 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049005.t1 | MTR_8g101490 | 98.039 | 612 | 12 | 0 | 90 | 701 | 177 | 788 | 0.0 | 1272 |
| MS.gene049005.t1 | MTR_8g101490 | 84.615 | 91 | 11 | 1 | 3 | 90 | 1 | 91 | 2.16e-36 | 147 |
| MS.gene049005.t1 | MTR_8g101490 | 98.253 | 458 | 8 | 0 | 90 | 547 | 177 | 634 | 0.0 | 957 |
| MS.gene049005.t1 | MTR_8g101490 | 84.615 | 91 | 11 | 1 | 3 | 90 | 1 | 91 | 1.28e-36 | 146 |
| MS.gene049005.t1 | MTR_3g099500 | 47.635 | 592 | 264 | 11 | 109 | 693 | 221 | 773 | 0.0 | 534 |
| MS.gene049005.t1 | MTR_3g099500 | 46.305 | 609 | 264 | 12 | 109 | 693 | 221 | 790 | 1.27e-176 | 524 |
| MS.gene049005.t1 | MTR_7g094560 | 33.989 | 559 | 289 | 16 | 121 | 661 | 325 | 821 | 4.55e-82 | 279 |
| MS.gene049005.t1 | MTR_1g090693 | 27.572 | 243 | 137 | 8 | 128 | 337 | 317 | 553 | 2.00e-15 | 80.9 |
| MS.gene049005.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 109 | 333 | 306 | 504 | 1.24e-11 | 68.6 |
| MS.gene049005.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 109 | 333 | 306 | 504 | 2.04e-11 | 67.8 |
| MS.gene049005.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 109 | 333 | 303 | 501 | 2.23e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049005.t1 | AT2G39930 | 81.743 | 608 | 111 | 0 | 90 | 697 | 172 | 779 | 0.0 | 1079 |
| MS.gene049005.t1 | AT2G39930 | 84.362 | 486 | 76 | 0 | 90 | 575 | 172 | 657 | 0.0 | 895 |
| MS.gene049005.t1 | AT2G39930 | 83.759 | 431 | 70 | 0 | 90 | 520 | 172 | 602 | 0.0 | 786 |
| MS.gene049005.t1 | AT4G09020 | 47.421 | 601 | 269 | 12 | 101 | 693 | 200 | 761 | 3.08e-180 | 532 |
| MS.gene049005.t1 | AT1G03310 | 31.765 | 595 | 316 | 18 | 121 | 693 | 349 | 875 | 2.21e-81 | 277 |
| MS.gene049005.t1 | AT1G03310 | 31.765 | 595 | 316 | 18 | 121 | 693 | 349 | 875 | 2.21e-81 | 277 |
| MS.gene049005.t1 | AT5G04360 | 23.576 | 509 | 291 | 19 | 113 | 549 | 304 | 786 | 2.10e-14 | 77.8 |
| MS.gene049005.t1 | AT5G04360 | 23.576 | 509 | 291 | 19 | 113 | 549 | 304 | 786 | 2.10e-14 | 77.8 |
| MS.gene049005.t1 | AT5G03650 | 30.603 | 232 | 121 | 11 | 109 | 333 | 258 | 456 | 6.07e-14 | 76.3 |
| MS.gene049005.t1 | AT2G36390 | 26.407 | 231 | 132 | 10 | 109 | 333 | 293 | 491 | 1.66e-11 | 68.2 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTCACTGGGGTATT+TGG | 0.181610 | 4.1:+3717821 | MS.gene049005:CDS |
| CTACAGTTACAATGCTATTC+AGG | 0.204436 | 4.1:+3714012 | MS.gene049005:CDS |
| ATCAATGGCGGACTGCTTAA+AGG | 0.214386 | 4.1:-3716679 | None:intergenic |
| TGGAACGGAGTTAATGTATT+TGG | 0.258630 | 4.1:+3716619 | MS.gene049005:CDS |
| AACTCCTCTAAAAGAAATAA+TGG | 0.265535 | 4.1:-3714859 | None:intergenic |
| GTTATAAGCAGAGGAGAGTT+TGG | 0.280859 | 4.1:+3712942 | MS.gene049005:CDS |
| CTTCTTTGACCTTGAATTTG+AGG | 0.284584 | 4.1:-3712201 | None:intergenic |
| GGGGAATTCTACAACTATTC+AGG | 0.301916 | 4.1:+3715683 | MS.gene049005:CDS |
| GGAGAAGCTTGATCACTTAA+AGG | 0.306680 | 4.1:+3713270 | MS.gene049005:CDS |
| CTGTATTGCAATATCTCTTC+CGG | 0.308252 | 4.1:-3722275 | None:intergenic |
| GGGAGTTCCGATGATATATA+TGG | 0.316369 | 4.1:+3720715 | MS.gene049005:intron |
| TGGGAGTCCTAATTTGTATC+AGG | 0.317614 | 4.1:+3718858 | MS.gene049005:CDS |
| ATCATTGTTGTCTTCTCCAT+TGG | 0.320037 | 4.1:-3719254 | None:intergenic |
| GTCAGCAAGTCACCTTCTAT+TGG | 0.323135 | 4.1:-3716646 | None:intergenic |
| AGGTACCATACCAGCCATTT+GGG | 0.325178 | 4.1:-3712994 | None:intergenic |
| ATATATATGGGAGATGAATA+TGG | 0.330449 | 4.1:+3720728 | MS.gene049005:CDS |
| AGATAAACCTGATACAAATT+AGG | 0.337665 | 4.1:-3718865 | None:intergenic |
| ATCATATGGTGCTTTCTTGC+TGG | 0.344939 | 4.1:-3722233 | None:intergenic |
| TCTGTTGTGAATCTCGAAAT+TGG | 0.346786 | 4.1:-3712162 | None:intergenic |
| AAGGGTACAGATGGCTTTGC+TGG | 0.353599 | 4.1:+3718814 | MS.gene049005:CDS |
| TCAGACCAGTCTGGTGTTAC+AGG | 0.355192 | 4.1:-3721100 | None:intergenic |
| TTATAAGCAGAGGAGAGTTT+GGG | 0.364589 | 4.1:+3712943 | MS.gene049005:CDS |
| AATTTATAGTGGACTGCTTA+AGG | 0.368791 | 4.1:+3715747 | MS.gene049005:CDS |
| TCTCTCGTGCAACAGATATT+GGG | 0.369152 | 4.1:+3716438 | MS.gene049005:intron |
| TGGCTTCACTCTAGCTGATT+TGG | 0.373124 | 4.1:+3719204 | MS.gene049005:CDS |
| CATCTGTACCCTTGATAAAC+TGG | 0.375594 | 4.1:-3718804 | None:intergenic |
| AGTCTGGTGTTACAGGAAAA+TGG | 0.377654 | 4.1:-3721093 | None:intergenic |
| AAGTTGGCACTTTCCCTCAC+TGG | 0.385401 | 4.1:+3717812 | MS.gene049005:CDS |
| TCGAGTAAGGCCGAGTTTCC+TGG | 0.387372 | 4.1:+3713229 | MS.gene049005:CDS |
| AAGGTACCATACCAGCCATT+TGG | 0.387541 | 4.1:-3712995 | None:intergenic |
| TTATTTCCGATGGGACAAAA+AGG | 0.389436 | 4.1:+3720886 | MS.gene049005:CDS |
| GAAGGTGACTTGCTGACAAT+TGG | 0.397727 | 4.1:+3716652 | MS.gene049005:CDS |
| TCATTGTTGTCTTCTCCATT+GGG | 0.398138 | 4.1:-3719253 | None:intergenic |
| TGACCTTGAATTTGAGGAAA+TGG | 0.399301 | 4.1:-3712195 | None:intergenic |
| ACTATAAATTTCCTTACAAC+GGG | 0.399791 | 4.1:-3715734 | None:intergenic |
| TCAATGGCGGACTGCTTAAA+GGG | 0.403047 | 4.1:-3716678 | None:intergenic |
| TAATTTCTTTCTTTCTCTCA+TGG | 0.403152 | 4.1:+3720035 | MS.gene049005:CDS |
| TTTCTCACACCTGATCTTCC+CGG | 0.403432 | 4.1:+3722256 | MS.gene049005:CDS |
| TTATTCATCTTGCAGGAACT+TGG | 0.405480 | 4.1:+3713938 | MS.gene049005:intron |
| ATTGCAACCATCCCGTTGTA+AGG | 0.408121 | 4.1:+3715723 | MS.gene049005:CDS |
| TGCAATGTGTTTAGTTTGAC+TGG | 0.408898 | 4.1:+3713125 | MS.gene049005:intron |
| GAGTTTCCTGGTACATATCT+TGG | 0.413063 | 4.1:+3713241 | MS.gene049005:CDS |
| TCTTTCTCTCATGGTTTCCC+AGG | 0.430118 | 4.1:+3720044 | MS.gene049005:CDS |
| CGGATGTCGGGAAGTCATCT+AGG | 0.434667 | 4.1:-3721051 | None:intergenic |
| ACTCCTCTAAAAGAAATAAT+GGG | 0.435507 | 4.1:-3714858 | None:intergenic |
| CAGAGCGTCCTGGATACATA+TGG | 0.435923 | 4.1:+3722194 | MS.gene049005:CDS |
| AGCCTTTGGAAACTTGCAAT+TGG | 0.436280 | 4.1:-3712292 | None:intergenic |
| GTATTTGGTGCTCCAATAGA+AGG | 0.437044 | 4.1:+3716634 | MS.gene049005:CDS |
| TCACCATTTCCTCAAATTCA+AGG | 0.439664 | 4.1:+3712192 | MS.gene049005:CDS |
| ATAGCTGAAGCCTGGGATGC+TGG | 0.441423 | 4.1:+3717778 | MS.gene049005:CDS |
| TGTATTGCAATATCTCTTCC+GGG | 0.441702 | 4.1:-3722274 | None:intergenic |
| AGAAGAAAACCTTCGCCGTT+GGG | 0.443010 | 4.1:+3712219 | MS.gene049005:CDS |
| CGTTGTAAGGAAATTTATAG+TGG | 0.443119 | 4.1:+3715736 | MS.gene049005:CDS |
| TAGGACCTGATGGTAATTGC+TGG | 0.443531 | 4.1:+3712970 | MS.gene049005:CDS |
| ACTGAAGCCTCTCGGATGTC+GGG | 0.446917 | 4.1:-3721063 | None:intergenic |
| GGCACACAGGCGAGGAATAG+AGG | 0.448960 | 4.1:+3714689 | MS.gene049005:CDS |
| CTATTATGACCAGGAGTAGC+AGG | 0.449828 | 4.1:+3716503 | MS.gene049005:CDS |
| TATAGCTTATAGCTGAAGCC+TGG | 0.452561 | 4.1:+3717770 | MS.gene049005:intron |
| GAGAAAATCACAATAGTAGC+TGG | 0.454266 | 4.1:+3719278 | MS.gene049005:CDS |
| CCCTCACTGGGGTATTTGGT+CGG | 0.455085 | 4.1:+3717825 | MS.gene049005:CDS |
| AGTGTTGTAGAGTGAGAAAG+AGG | 0.455306 | 4.1:-3712119 | None:intergenic |
| TGCAGCTTAATTATTTCCGA+TGG | 0.457344 | 4.1:+3720876 | MS.gene049005:intron |
| GCCTTTGAAATATCCACAAA+AGG | 0.460159 | 4.1:+3713159 | MS.gene049005:CDS |
| ATATCTCTTCCGGGAAGATC+AGG | 0.461427 | 4.1:-3722265 | None:intergenic |
| GTATTTGGTCGGAATGGAAT+GGG | 0.462316 | 4.1:+3717836 | MS.gene049005:CDS |
| CATTGGTGAAAAGTAATTGA+TGG | 0.464554 | 4.1:-3714592 | None:intergenic |
| GTAGGGTGAAGGGTAGCCTT+TGG | 0.465735 | 4.1:-3712306 | None:intergenic |
| CACTGTGCGCCAGTTTATCA+AGG | 0.467746 | 4.1:+3718795 | MS.gene049005:CDS |
| ACAAGCTAAGCATTTACATC+GGG | 0.468285 | 4.1:-3722370 | None:intergenic |
| GCTGATGAGTATCTTATCAT+TGG | 0.475818 | 4.1:-3714609 | None:intergenic |
| ATTACTGGAGCAGGTTATCA+TGG | 0.476022 | 4.1:+3714794 | MS.gene049005:intron |
| ACCTTCACTCCACGAAGTAT+TGG | 0.476206 | 4.1:-3716721 | None:intergenic |
| GTACAGGCCTCCAGCATCCC+AGG | 0.477191 | 4.1:-3717788 | None:intergenic |
| TGGTAATTGCTGGCCCCAAA+TGG | 0.480850 | 4.1:+3712980 | MS.gene049005:CDS |
| AGAGGAGAGTTTGGGGAAGT+AGG | 0.483861 | 4.1:+3712951 | MS.gene049005:CDS |
| TTCTACAACTATTCAGGATG+TGG | 0.486104 | 4.1:+3715689 | MS.gene049005:CDS |
| AGTACCTCCTCATGATCAAA+AGG | 0.493664 | 4.1:-3713014 | None:intergenic |
| AGTTGGCACTTTCCCTCACT+GGG | 0.493678 | 4.1:+3717813 | MS.gene049005:CDS |
| CACTGAAGCCTCTCGGATGT+CGG | 0.494549 | 4.1:-3721064 | None:intergenic |
| CATATGTATCCAGGACGCTC+TGG | 0.496645 | 4.1:-3722193 | None:intergenic |
| GGTATTTGGTCGGAATGGAA+TGG | 0.501264 | 4.1:+3717835 | MS.gene049005:CDS |
| ACTAAGCATGGGATACATCT+TGG | 0.501593 | 4.1:-3722320 | None:intergenic |
| ATTACCTTGCCAGAGCGTCC+TGG | 0.503886 | 4.1:+3722184 | MS.gene049005:CDS |
| TCATTTCATTAATCCCATCA+TGG | 0.505131 | 4.1:-3714650 | None:intergenic |
| TACAAAGCATGAGTCGAGTA+AGG | 0.506814 | 4.1:+3713216 | MS.gene049005:CDS |
| GCATTTGCTGAATGTATTTG+TGG | 0.508395 | 4.1:+3718838 | MS.gene049005:CDS |
| TACAGTTACAATGCTATTCA+GGG | 0.511531 | 4.1:+3714013 | MS.gene049005:CDS |
| TACAAAACTGTGGCCATGAT+GGG | 0.511714 | 4.1:+3714637 | MS.gene049005:CDS |
| GATGAATATGGACATACAAA+AGG | 0.512112 | 4.1:+3720740 | MS.gene049005:CDS |
| GGAAAGTGCCAACTTGGTAC+AGG | 0.512943 | 4.1:-3717804 | None:intergenic |
| ACTGGCGGAACTTGGTCAAA+AGG | 0.516343 | 4.1:-3720943 | None:intergenic |
| GGAGTTCCGATGATATATAT+GGG | 0.517870 | 4.1:+3720716 | MS.gene049005:CDS |
| TGGGGCCAGCAATTACCATC+AGG | 0.521370 | 4.1:-3712975 | None:intergenic |
| TGCAGGGAATGTGAGTCGCT+TGG | 0.523500 | 4.1:+3721028 | MS.gene049005:intron |
| AGTGAGGGAAAGTGCCAACT+TGG | 0.524104 | 4.1:-3717810 | None:intergenic |
| CGGCTAGATTCAGACCAGTC+TGG | 0.526153 | 4.1:-3721109 | None:intergenic |
| ATCTTGCTTCTATTATGACC+AGG | 0.526714 | 4.1:+3716494 | MS.gene049005:CDS |
| CTGGCCCCAAATGGCTGGTA+TGG | 0.529820 | 4.1:+3712989 | MS.gene049005:CDS |
| CACTATAAATTTCCTTACAA+CGG | 0.530840 | 4.1:-3715735 | None:intergenic |
| AACCTTGTATGTGCTCATGA+TGG | 0.532079 | 4.1:+3719184 | MS.gene049005:CDS |
| AAGTGCTTACTGGCGGAACT+TGG | 0.533271 | 4.1:-3720951 | None:intergenic |
| GTGCCTCAGTAAAGAAATTG+AGG | 0.534102 | 4.1:+3719998 | MS.gene049005:CDS |
| TTCTTGAGGAGTGGCACCGT+AGG | 0.535813 | 4.1:-3712324 | None:intergenic |
| AAGAAGAAAACCTTCGCCGT+TGG | 0.535917 | 4.1:+3712218 | MS.gene049005:CDS |
| ATGATAAGATACTCATCAGC+TGG | 0.536295 | 4.1:+3714612 | MS.gene049005:CDS |
| AGTATATAACCTGCTACTCC+TGG | 0.536428 | 4.1:-3716512 | None:intergenic |
| GATTGAAGAGTAACTAAGCA+TGG | 0.540141 | 4.1:-3722332 | None:intergenic |
| ACTCAGATGGACTCGGTGAA+GGG | 0.540328 | 4.1:+3722118 | MS.gene049005:intron |
| AGAGGTTCCCATATGTATCC+AGG | 0.540662 | 4.1:-3722202 | None:intergenic |
| TCAGGTGTGAGAAAATCATA+TGG | 0.541452 | 4.1:-3722247 | None:intergenic |
| CATTTGCTGAATGTATTTGT+GGG | 0.541483 | 4.1:+3718839 | MS.gene049005:CDS |
| CACAATAGTAGCTGGAACTG+TGG | 0.542471 | 4.1:+3719286 | MS.gene049005:CDS |
| AACTCAGATGGACTCGGTGA+AGG | 0.542854 | 4.1:+3722117 | MS.gene049005:intron |
| CAGTTTATCAAGGGTACAGA+TGG | 0.543032 | 4.1:+3718805 | MS.gene049005:CDS |
| TTACTGATCATATCAATCAA+TGG | 0.544584 | 4.1:-3716694 | None:intergenic |
| GTGCCACTCCTCAAGAAGAC+GGG | 0.548138 | 4.1:+3712330 | MS.gene049005:CDS |
| AATTGCTGGCCCCAAATGGC+TGG | 0.551029 | 4.1:+3712984 | MS.gene049005:CDS |
| GCCATGCCACTGAAGCCTCT+CGG | 0.551964 | 4.1:-3721071 | None:intergenic |
| AATGGAGAAGACAACAATGA+TGG | 0.552146 | 4.1:+3719256 | MS.gene049005:CDS |
| TCCGAGAGGCTTCAGTGGCA+TGG | 0.554648 | 4.1:+3721070 | MS.gene049005:CDS |
| ATGTCATGAGTTCAATGAGC+TGG | 0.556145 | 4.1:+3713985 | MS.gene049005:CDS |
| TGGTACATATCTTGGTGTAG+TGG | 0.556196 | 4.1:+3713249 | MS.gene049005:CDS |
| TAAATTTCCTTACAACGGGA+TGG | 0.557866 | 4.1:-3715730 | None:intergenic |
| GCTTTGATCAACAATGGCAA+TGG | 0.558374 | 4.1:+3712073 | None:intergenic |
| GGAGTGGCACCGTAGGGTGA+AGG | 0.558934 | 4.1:-3712317 | None:intergenic |
| ACTGGGGTATTTGGTCGGAA+TGG | 0.560039 | 4.1:+3717830 | MS.gene049005:CDS |
| TCCAATACTTCGTGGAGTGA+AGG | 0.560057 | 4.1:+3716720 | MS.gene049005:CDS |
| GCAGCTTAATTATTTCCGAT+GGG | 0.560112 | 4.1:+3720877 | MS.gene049005:intron |
| CGCCAATTGCAAGTTTCCAA+AGG | 0.561119 | 4.1:+3712290 | MS.gene049005:CDS |
| GAAAGAGGAGAGAGAATGTG+AGG | 0.563347 | 4.1:-3712104 | None:intergenic |
| ACAAGGTTAATACTATTCCA+TGG | 0.565220 | 4.1:-3719169 | None:intergenic |
| TTCTTGCTGGTGTCTACGAG+AGG | 0.566153 | 4.1:-3722220 | None:intergenic |
| TGACAATAGCGTGTATTACA+TGG | 0.566359 | 4.1:+3714881 | MS.gene049005:CDS |
| ATAGCTTATAGCTGAAGCCT+GGG | 0.567230 | 4.1:+3717771 | MS.gene049005:intron |
| TTTCCTCAATTTCTTTACTG+AGG | 0.567283 | 4.1:-3720001 | None:intergenic |
| AGTAATGATCCAATACTTCG+TGG | 0.568695 | 4.1:+3716712 | MS.gene049005:CDS |
| GACACGATTCCCAACGGCGA+AGG | 0.568849 | 4.1:-3712228 | None:intergenic |
| TGAATTTGAGGAAATGGTGA+TGG | 0.569036 | 4.1:-3712189 | None:intergenic |
| TATATGAAATGCATGTGAGA+GGG | 0.570887 | 4.1:+3713191 | MS.gene049005:CDS |
| CCAGGGTAAAAGCCACAAAA+CGG | 0.572393 | 4.1:-3721129 | None:intergenic |
| AAATTGACCCCGTCTTCTTG+AGG | 0.573022 | 4.1:-3712338 | None:intergenic |
| GTATTACATGGTAGCACCCA+AGG | 0.574567 | 4.1:+3714893 | MS.gene049005:CDS |
| AAAGGCTACCCTTCACCCTA+CGG | 0.576668 | 4.1:+3712308 | MS.gene049005:CDS |
| AAAATAAACTCAGATGGACT+CGG | 0.579909 | 4.1:+3722111 | MS.gene049005:intron |
| TATAAGCAGAGGAGAGTTTG+GGG | 0.580184 | 4.1:+3712944 | MS.gene049005:CDS |
| AGCCATCATGAGCACATACA+AGG | 0.581009 | 4.1:-3719186 | None:intergenic |
| TTTGTTACCAGTCTCTGGAA+CGG | 0.582944 | 4.1:+3716604 | MS.gene049005:intron |
| AGAGCGTCCTGGATACATAT+GGG | 0.583885 | 4.1:+3722195 | MS.gene049005:CDS |
| GATTAGGCAGTTATAAGCAG+AGG | 0.584382 | 4.1:+3712933 | MS.gene049005:intron |
| GCCTGTGTGCCTCTTTGATG+AGG | 0.584935 | 4.1:-3714677 | None:intergenic |
| TCTTGAGGAGTGGCACCGTA+GGG | 0.585196 | 4.1:-3712323 | None:intergenic |
| TCATCTCCCATATATATCAT+CGG | 0.586946 | 4.1:-3720722 | None:intergenic |
| CACGTAATTATCATGACAGT+AGG | 0.588746 | 4.1:-3720777 | None:intergenic |
| GAGTGGCACCGTAGGGTGAA+GGG | 0.589871 | 4.1:-3712316 | None:intergenic |
| CGACATCCGAGAGGCTTCAG+TGG | 0.590601 | 4.1:+3721065 | MS.gene049005:CDS |
| TTTGGGGAAGTAGGACCTGA+TGG | 0.592579 | 4.1:+3712960 | MS.gene049005:CDS |
| ATACAAAACTGTGGCCATGA+TGG | 0.598588 | 4.1:+3714636 | MS.gene049005:CDS |
| GTAACAGAAATGCACGTGGA+TGG | 0.600720 | 4.1:+3716460 | MS.gene049005:CDS |
| TTCGCCGTTGGGAATCGTGT+CGG | 0.601538 | 4.1:+3712230 | MS.gene049005:CDS |
| TACAGCTGAAGGGAATGAGA+AGG | 0.602790 | 4.1:+3714833 | MS.gene049005:CDS |
| TCTGGCAAGGTAATAGTGAA+AGG | 0.602980 | 4.1:-3722175 | None:intergenic |
| GCTGGAGGCCTGTACCAAGT+TGG | 0.603543 | 4.1:+3717796 | MS.gene049005:CDS |
| ATTTGAGGAAATGGTGATGG+AGG | 0.605171 | 4.1:-3712186 | None:intergenic |
| TACAAGCTAAGCATTTACAT+CGG | 0.605456 | 4.1:-3722371 | None:intergenic |
| TCCTCATCAAAGAGGCACAC+AGG | 0.607009 | 4.1:+3714676 | MS.gene049005:CDS |
| ATTGAAGAGTAACTAAGCAT+GGG | 0.607101 | 4.1:-3722331 | None:intergenic |
| AACAAGCATAACTTGCCCAA+TGG | 0.607580 | 4.1:+3719238 | MS.gene049005:CDS |
| AAGATATGTACCAGGAAACT+CGG | 0.608454 | 4.1:-3713239 | None:intergenic |
| TCTACAACTATTCAGGATGT+GGG | 0.610031 | 4.1:+3715690 | MS.gene049005:CDS |
| GTATCCAGGACGCTCTGGCA+AGG | 0.614100 | 4.1:-3722188 | None:intergenic |
| ATCAAAGAGGCACACAGGCG+AGG | 0.614929 | 4.1:+3714681 | MS.gene049005:CDS |
| ATATATGAAATGCATGTGAG+AGG | 0.617561 | 4.1:+3713190 | MS.gene049005:CDS |
| GAATATGGACATACAAAAGG+AGG | 0.618039 | 4.1:+3720743 | MS.gene049005:CDS |
| GACCCCGTCTTCTTGAGGAG+TGG | 0.621998 | 4.1:-3712333 | None:intergenic |
| GGTGCCACTCCTCAAGAAGA+CGG | 0.623962 | 4.1:+3712329 | MS.gene049005:CDS |
| AATGAAGCTCCTCATCAAAG+AGG | 0.627064 | 4.1:+3714668 | MS.gene049005:CDS |
| AGCTCATTGAACTCATGACA+TGG | 0.632491 | 4.1:-3713983 | None:intergenic |
| ACAGCTGAAGGGAATGAGAA+GGG | 0.635794 | 4.1:+3714834 | MS.gene049005:CDS |
| TGTGTTTAGTTTGACTGGGA+AGG | 0.637186 | 4.1:+3713130 | MS.gene049005:intron |
| ACAGTTACAATGCTATTCAG+GGG | 0.651047 | 4.1:+3714014 | MS.gene049005:CDS |
| CAATGGCGGACTGCTTAAAG+GGG | 0.654129 | 4.1:-3716677 | None:intergenic |
| GCAATGTGTTTAGTTTGACT+GGG | 0.655343 | 4.1:+3713126 | MS.gene049005:intron |
| CCGACCAAATACCCCAGTGA+GGG | 0.656679 | 4.1:-3717825 | None:intergenic |
| GGCGGAACTTGGTCAAAAGG+CGG | 0.659867 | 4.1:-3720940 | None:intergenic |
| TTGGTCGGAATGGAATGGGA+AGG | 0.660527 | 4.1:+3717840 | MS.gene049005:CDS |
| GCTGAAGCCTGGGATGCTGG+AGG | 0.661627 | 4.1:+3717781 | MS.gene049005:CDS |
| GGTACCATACCAGCCATTTG+GGG | 0.663979 | 4.1:-3712993 | None:intergenic |
| AACACCGACACGATTCCCAA+CGG | 0.668297 | 4.1:-3712234 | None:intergenic |
| ACTGTGCGCCAGTTTATCAA+GGG | 0.670739 | 4.1:+3718796 | MS.gene049005:CDS |
| ACTACACCAAGATATGTACC+AGG | 0.672743 | 4.1:-3713247 | None:intergenic |
| TAGTAGCTGGAACTGTGGAG+AGG | 0.681130 | 4.1:+3719291 | MS.gene049005:CDS |
| CAGTTACAATGCTATTCAGG+GGG | 0.682543 | 4.1:+3714015 | MS.gene049005:CDS |
| TGCCACTCCTCAAGAAGACG+GGG | 0.682576 | 4.1:+3712331 | MS.gene049005:CDS |
| AAGCTAAGCATTTACATCGG+GGG | 0.687980 | 4.1:-3722368 | None:intergenic |
| TACAGGGAGGAAGAAAACCA+TGG | 0.702341 | 4.1:+3719152 | MS.gene049005:intron |
| CAAGCTAAGCATTTACATCG+GGG | 0.707585 | 4.1:-3722369 | None:intergenic |
| CTGATCATATCAATCAATGG+CGG | 0.707861 | 4.1:-3716691 | None:intergenic |
| GTTGGCACTTTCCCTCACTG+GGG | 0.708819 | 4.1:+3717814 | MS.gene049005:CDS |
| TCAGCTGGCATACAAAACTG+TGG | 0.712260 | 4.1:+3714627 | MS.gene049005:CDS |
| AAATCTGAAGAAGTCTGACG+AGG | 0.720742 | 4.1:-3720915 | None:intergenic |
| TCCGACCAAATACCCCAGTG+AGG | 0.722871 | 4.1:-3717826 | None:intergenic |
| ATGACTTCCCGACATCCGAG+AGG | 0.723647 | 4.1:+3721056 | MS.gene049005:CDS |
| TTGGGTAACAGAAATGCACG+TGG | 0.738443 | 4.1:+3716456 | MS.gene049005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3712086 | 3722387 | 3712086 | ID=MS.gene049005 |
| chr4.1 | mRNA | 3712086 | 3722387 | 3712086 | ID=MS.gene049005.t1;Parent=MS.gene049005 |
| chr4.1 | exon | 3712086 | 3712352 | 3712086 | ID=MS.gene049005.t1.exon1;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3712086 | 3712352 | 3712086 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3712939 | 3713031 | 3712939 | ID=MS.gene049005.t1.exon2;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3712939 | 3713031 | 3712939 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3713139 | 3713291 | 3713139 | ID=MS.gene049005.t1.exon3;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3713139 | 3713291 | 3713139 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3713953 | 3714044 | 3713953 | ID=MS.gene049005.t1.exon4;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3713953 | 3714044 | 3713953 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3714569 | 3714710 | 3714569 | ID=MS.gene049005.t1.exon5;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3714569 | 3714710 | 3714569 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3714807 | 3714914 | 3714807 | ID=MS.gene049005.t1.exon6;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3714807 | 3714914 | 3714807 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3715683 | 3715768 | 3715683 | ID=MS.gene049005.t1.exon7;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3715683 | 3715768 | 3715683 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3716453 | 3716524 | 3716453 | ID=MS.gene049005.t1.exon8;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3716453 | 3716524 | 3716453 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3716615 | 3716741 | 3716615 | ID=MS.gene049005.t1.exon9;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3716615 | 3716741 | 3716615 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3717775 | 3717861 | 3717775 | ID=MS.gene049005.t1.exon10;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3717775 | 3717861 | 3717775 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3718787 | 3718879 | 3718787 | ID=MS.gene049005.t1.exon11;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3718787 | 3718879 | 3718787 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3719157 | 3719312 | 3719157 | ID=MS.gene049005.t1.exon12;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3719157 | 3719312 | 3719157 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3719982 | 3720065 | 3719982 | ID=MS.gene049005.t1.exon13;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3719982 | 3720065 | 3719982 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3720716 | 3720796 | 3720716 | ID=MS.gene049005.t1.exon14;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3720716 | 3720796 | 3720716 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3720881 | 3720963 | 3720881 | ID=MS.gene049005.t1.exon15;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3720881 | 3720963 | 3720881 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3721033 | 3721150 | 3721033 | ID=MS.gene049005.t1.exon16;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3721033 | 3721150 | 3721033 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| chr4.1 | exon | 3722124 | 3722387 | 3722124 | ID=MS.gene049005.t1.exon17;Parent=MS.gene049005.t1 |
| chr4.1 | CDS | 3722124 | 3722387 | 3722124 | ID=cds.MS.gene049005.t1;Parent=MS.gene049005.t1 |
| Gene Sequence |
| Protein sequence |
