Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38584.t1 | XP_003602838.2 | 97.2 | 779 | 19 | 2 | 1 | 778 | 1 | 777 | 0.00E+00 | 1570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38584.t1 | Q9M0S5 | 73.0 | 760 | 195 | 3 | 19 | 777 | 14 | 764 | 0.0e+00 | 1177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38584.t1 | G7J3Z4 | 97.2 | 779 | 19 | 2 | 1 | 778 | 1 | 777 | 0.0e+00 | 1570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene38584 | 0.815944 | 7.13E-52 | -1.69E-46 |
| MS.gene050936 | MS.gene38584 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene051064 | MS.gene38584 | 0.828449 | 8.94E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene38584 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene38584 | 0.84548 | 3.96E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene38584 | -0.832068 | 1.17E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene38584 | 0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene053188 | MS.gene38584 | 0.822878 | 1.87E-53 | -1.69E-46 |
| MS.gene054537 | MS.gene38584 | 0.84241 | 2.63E-58 | -1.69E-46 |
| MS.gene056087 | MS.gene38584 | 0.845644 | 3.57E-59 | -1.69E-46 |
| MS.gene057079 | MS.gene38584 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene059710 | MS.gene38584 | 0.840078 | 1.08E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene38584 | 0.844421 | 7.64E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38584 | MS.gene55868 | PPI |
| MS.gene38584 | MS.gene06191 | PPI |
| MS.gene38584 | MS.gene049005 | PPI |
| MS.gene20174 | MS.gene38584 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38584.t1 | MTR_3g099500 | 97.818 | 779 | 14 | 2 | 1 | 778 | 1 | 777 | 0.0 | 1577 |
| MS.gene38584.t1 | MTR_3g099500 | 95.729 | 796 | 14 | 3 | 1 | 778 | 1 | 794 | 0.0 | 1568 |
| MS.gene38584.t1 | MTR_8g101490 | 44.565 | 736 | 352 | 16 | 82 | 774 | 58 | 780 | 0.0 | 600 |
| MS.gene38584.t1 | MTR_8g101490 | 48.211 | 587 | 267 | 12 | 82 | 642 | 58 | 633 | 0.0 | 533 |
| MS.gene38584.t1 | MTR_7g094560 | 37.092 | 674 | 352 | 20 | 102 | 756 | 203 | 823 | 2.71e-124 | 394 |
| MS.gene38584.t1 | MTR_1g090693 | 28.354 | 395 | 232 | 14 | 167 | 517 | 235 | 622 | 1.54e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38584.t1 | AT4G09020 | 71.928 | 773 | 207 | 3 | 6 | 777 | 1 | 764 | 0.0 | 1178 |
| MS.gene38584.t1 | AT2G39930 | 44.875 | 722 | 335 | 16 | 100 | 774 | 70 | 775 | 0.0 | 584 |
| MS.gene38584.t1 | AT2G39930 | 48.087 | 601 | 268 | 12 | 100 | 670 | 70 | 656 | 0.0 | 545 |
| MS.gene38584.t1 | AT2G39930 | 47.532 | 547 | 243 | 12 | 100 | 616 | 70 | 602 | 1.33e-161 | 483 |
| MS.gene38584.t1 | AT1G03310 | 34.589 | 717 | 358 | 25 | 102 | 776 | 230 | 877 | 1.62e-112 | 362 |
| MS.gene38584.t1 | AT1G03310 | 34.589 | 717 | 358 | 25 | 102 | 776 | 230 | 877 | 1.62e-112 | 362 |
| MS.gene38584.t1 | AT5G04360 | 27.294 | 425 | 226 | 18 | 106 | 484 | 207 | 594 | 5.11e-23 | 105 |
| MS.gene38584.t1 | AT5G04360 | 27.294 | 425 | 226 | 18 | 106 | 484 | 207 | 594 | 5.11e-23 | 105 |
Find 186 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATACATAGGTTATTT+TGG | 0.101279 | 3.3:+81885999 | MS.gene38584:intron |
| ATTGAAGGTCGAAGATATTT+TGG | 0.134802 | 3.3:+81884569 | MS.gene38584:CDS |
| AGCTTTGCAACTCGTGTTTC+TGG | 0.153163 | 3.3:+81889650 | MS.gene38584:CDS |
| AATATCTAAATTTACCTTTC+AGG | 0.162754 | 3.3:-81882732 | None:intergenic |
| GAAGAATTACCCGAAATTTC+CGG | 0.220180 | 3.3:-81881632 | None:intergenic |
| AATTCAGTCGCCGGAAATTT+CGG | 0.228870 | 3.3:+81881622 | MS.gene38584:CDS |
| AGGAAATTGTCTAAGTTTCT+AGG | 0.236363 | 3.3:+81884602 | MS.gene38584:CDS |
| ATTCAGTCGCCGGAAATTTC+GGG | 0.240981 | 3.3:+81881623 | MS.gene38584:CDS |
| AAGAATACCTCGGCAATATT+TGG | 0.242789 | 3.3:-81884677 | None:intergenic |
| CACATGTCCTAGGGTGATTC+TGG | 0.269164 | 3.3:+81889617 | MS.gene38584:intron |
| CAAGGAAGGGCGATCACTTT+AGG | 0.274375 | 3.3:+81893205 | MS.gene38584:CDS |
| TGTTATTTCCGTAGCGAGTA+TGG | 0.279104 | 3.3:-81893055 | None:intergenic |
| ATTTCGTGGCATAGATAATA+AGG | 0.302515 | 3.3:+81886077 | MS.gene38584:CDS |
| CAAACAAAACAGGGGATATC+TGG | 0.318632 | 3.3:+81883837 | MS.gene38584:CDS |
| TCCATACTCCTCCATTCTTC+TGG | 0.326335 | 3.3:+81894840 | MS.gene38584:CDS |
| TCCGGCGCCGGCAGCGTTCC+TGG | 0.327985 | 3.3:+81881595 | MS.gene38584:CDS |
| ACCATGTGATCTCTGGGATT+TGG | 0.340416 | 3.3:-81885311 | None:intergenic |
| TAACCATTTGCTTCAACTCT+TGG | 0.345521 | 3.3:-81885829 | None:intergenic |
| GGAAATATCGTGATGATATA+CGG | 0.347322 | 3.3:+81889335 | MS.gene38584:CDS |
| TCAATGCTCCTCCCCTCATC+AGG | 0.348034 | 3.3:+81887597 | MS.gene38584:CDS |
| AATGCTAATGCTAATGCTTA+TGG | 0.348338 | 3.3:+81881935 | MS.gene38584:CDS |
| GATCCTCATTCAAACAAAAC+AGG | 0.359852 | 3.3:+81883827 | MS.gene38584:CDS |
| TAACATGGCATGAAGACAAT+TGG | 0.360246 | 3.3:+81893413 | MS.gene38584:CDS |
| TTGTAGCACAACGAAGCTAA+TGG | 0.370505 | 3.3:+81890554 | MS.gene38584:intron |
| TGTAGCACAACGAAGCTAAT+GGG | 0.376583 | 3.3:+81890555 | MS.gene38584:intron |
| CCTTACACTACTTCATTTCG+TGG | 0.377825 | 3.3:+81886063 | MS.gene38584:CDS |
| ATAATTTACCATGTGATCTC+TGG | 0.381085 | 3.3:-81885318 | None:intergenic |
| GTAGTCCATACCAATGTCTT+AGG | 0.389694 | 3.3:-81887058 | None:intergenic |
| TTCTTGAAGCGCAGAGTAAT+GGG | 0.391645 | 3.3:-81881537 | None:intergenic |
| GGGAACACCGATGATGCTAA+TGG | 0.391733 | 3.3:+81893019 | MS.gene38584:intron |
| CAAGAGAAGGTTTCAAGCTT+AGG | 0.393866 | 3.3:+81881900 | MS.gene38584:CDS |
| TTGTAACCATCCTGTGGTTA+TGG | 0.397934 | 3.3:+81887019 | MS.gene38584:CDS |
| AATGAAGTAGTGTAAGGATT+AGG | 0.400159 | 3.3:-81886057 | None:intergenic |
| AACATTCGTGGAAGCTATCT+TGG | 0.400532 | 3.3:+81885014 | MS.gene38584:CDS |
| GATGAGGGGAGGAGCATTGA+GGG | 0.404227 | 3.3:-81887594 | None:intergenic |
| GATGCAATGATAACTTTAGT+TGG | 0.408830 | 3.3:+81890594 | MS.gene38584:CDS |
| CAACTTCTGCGATCAAAACT+TGG | 0.411633 | 3.3:-81894866 | None:intergenic |
| TAAAATTATTGCAGAGCCTT+GGG | 0.413250 | 3.3:+81888520 | MS.gene38584:CDS |
| AAGTTTAGTAAGCAAACATC+TGG | 0.417882 | 3.3:+81881765 | MS.gene38584:CDS |
| ATCGTCCTCGATGGCGTCCC+AGG | 0.419220 | 3.3:+81894793 | MS.gene38584:CDS |
| CTCTATGCCAGCAGAATGTA+AGG | 0.420920 | 3.3:-81885855 | None:intergenic |
| ACAAAATTAATACCATGATA+TGG | 0.425640 | 3.3:-81890409 | None:intergenic |
| TCCAGAAGAATGGAGGAGTA+TGG | 0.426188 | 3.3:-81894841 | None:intergenic |
| AGATTGATGGACCTCAAGAC+TGG | 0.429638 | 3.3:+81884489 | MS.gene38584:CDS |
| CATTGATACCAAGCTCTAGA+AGG | 0.430604 | 3.3:-81885235 | None:intergenic |
| GGAACACCGATGATGCTAAT+GGG | 0.432770 | 3.3:+81893020 | MS.gene38584:CDS |
| AGTCTTGAGGTCCATCAATC+TGG | 0.432957 | 3.3:-81884487 | None:intergenic |
| AACCATTTGCTTCAACTCTT+GGG | 0.434675 | 3.3:-81885828 | None:intergenic |
| GCACTAGCATAGCGACTCAT+AGG | 0.441731 | 3.3:-81885782 | None:intergenic |
| AATGGGGAAGGTGGAAATGA+TGG | 0.441846 | 3.3:+81890572 | MS.gene38584:CDS |
| AAGTATTACCGGTCCCAATT+CGG | 0.443400 | 3.3:-81888575 | None:intergenic |
| ACCAGGAACGCTGCCGGCGC+CGG | 0.452557 | 3.3:-81881596 | None:intergenic |
| AACTCTTGGGAAGCATTAGC+TGG | 0.453115 | 3.3:-81885815 | None:intergenic |
| CTGTACGTTTCTCCTATGCC+TGG | 0.454517 | 3.3:-81894811 | None:intergenic |
| TCTTGTTTCATACAACTTCA+AGG | 0.458629 | 3.3:+81890462 | MS.gene38584:CDS |
| GTAAAATTATTGCAGAGCCT+TGG | 0.459216 | 3.3:+81888519 | MS.gene38584:CDS |
| CCATCGAGGACGATGTCATC+AGG | 0.462451 | 3.3:-81894784 | None:intergenic |
| GCTGCCGGCGCCGGAGAAAA+CGG | 0.463970 | 3.3:-81881587 | None:intergenic |
| TGAGGGGAGGAGCATTGAGG+GGG | 0.464609 | 3.3:-81887592 | None:intergenic |
| TACGGAAATAACAATAGCTA+TGG | 0.465711 | 3.3:+81893065 | MS.gene38584:CDS |
| TCTAGCATTAATGATATCTC+AGG | 0.466140 | 3.3:+81892420 | MS.gene38584:CDS |
| TCATTGTGCAGGATCTTCCT+AGG | 0.466830 | 3.3:+81884444 | MS.gene38584:intron |
| ATCTCATCAAACTCAAAGAT+AGG | 0.469010 | 3.3:-81885272 | None:intergenic |
| CTAGGGTGATTCTGGTATGA+AGG | 0.470733 | 3.3:+81889625 | MS.gene38584:intron |
| GTTCTTGAAGCGCAGAGTAA+TGG | 0.470761 | 3.3:-81881538 | None:intergenic |
| CCTTATGCAAAACTAATTGA+AGG | 0.472436 | 3.3:+81884554 | MS.gene38584:CDS |
| TATCTTTGAGTTTGATGAGA+TGG | 0.479374 | 3.3:+81885274 | MS.gene38584:CDS |
| CGCTATGCTAGTGCTGGTGG+AGG | 0.480924 | 3.3:+81885791 | MS.gene38584:CDS |
| AACATGGCATGAAGACAATT+GGG | 0.484123 | 3.3:+81893414 | MS.gene38584:CDS |
| GTAGGTGGGCTGAATGGAAT+GGG | 0.489614 | 3.3:+81889314 | MS.gene38584:intron |
| GTTAAAGCCTTACATTCTGC+TGG | 0.489939 | 3.3:+81885848 | MS.gene38584:CDS |
| GGACAATTGCTGAACTTCTC+CGG | 0.490724 | 3.3:+81886509 | MS.gene38584:CDS |
| CCACGAAATGAAGTAGTGTA+AGG | 0.493976 | 3.3:-81886063 | None:intergenic |
| TTCCCAAGAGTTGAAGCAAA+TGG | 0.494723 | 3.3:+81885826 | MS.gene38584:CDS |
| AAACTTGGCCTCCAGAAGAA+TGG | 0.496571 | 3.3:-81894851 | None:intergenic |
| TGTGGAGGTCTATATCTTGT+TGG | 0.496751 | 3.3:+81888545 | MS.gene38584:CDS |
| CCATCATGGGAGACTTCTCC+AGG | 0.497759 | 3.3:+81882612 | MS.gene38584:CDS |
| GATAACTTTAGTTGGAATTG+TGG | 0.498203 | 3.3:+81890602 | MS.gene38584:CDS |
| TCTATAGGTTTATTACATGC+TGG | 0.503472 | 3.3:+81886478 | MS.gene38584:intron |
| TAATTTACCATGTGATCTCT+GGG | 0.505388 | 3.3:-81885317 | None:intergenic |
| ATCCCACACCTTCTAGAGCT+TGG | 0.506100 | 3.3:+81885227 | MS.gene38584:CDS |
| GTATAAGAGCTCTGCGGTCG+AGG | 0.507547 | 3.3:+81892380 | MS.gene38584:CDS |
| GGCATAGGTTAGACAAGAGA+AGG | 0.508231 | 3.3:+81881887 | MS.gene38584:intron |
| AAAGATAAAATTACCACAGC+CGG | 0.511082 | 3.3:-81886528 | None:intergenic |
| TGCTCAAGAAGAGGTCCTTA+AGG | 0.512559 | 3.3:+81881961 | MS.gene38584:CDS |
| GAGGGGAGGAGCATTGAGGG+GGG | 0.513118 | 3.3:-81887591 | None:intergenic |
| CTGTACGGATACCAGATTGA+TGG | 0.514119 | 3.3:+81884476 | MS.gene38584:CDS |
| TGTAGGTGGGCTGAATGGAA+TGG | 0.514806 | 3.3:+81889313 | MS.gene38584:intron |
| GGATGGTGGTATGATAGAAC+TGG | 0.516922 | 3.3:+81883799 | MS.gene38584:CDS |
| TCAATAGTTGGATGCAAGGA+AGG | 0.517959 | 3.3:+81893191 | MS.gene38584:intron |
| TTCTTGACAGCCTAAGACAT+TGG | 0.520511 | 3.3:+81887048 | MS.gene38584:CDS |
| TGGTATGATAGAACTGGCTT+TGG | 0.523068 | 3.3:+81883805 | MS.gene38584:CDS |
| TTGCTGAACTTCTCCGGCTG+TGG | 0.523558 | 3.3:+81886515 | MS.gene38584:CDS |
| TATATTTATTACCCTGATGA+GGG | 0.528876 | 3.3:-81887609 | None:intergenic |
| AATGGATGAATCTAGTGAGT+TGG | 0.529017 | 3.3:+81884986 | MS.gene38584:CDS |
| TTTGATGTAGGTGGGCTGAA+TGG | 0.530787 | 3.3:+81889308 | MS.gene38584:intron |
| CCTGGAGAAGTCTCCCATGA+TGG | 0.533738 | 3.3:-81882612 | None:intergenic |
| TCTCCAATGCGATAAAGTAC+CGG | 0.534057 | 3.3:+81893232 | MS.gene38584:CDS |
| CCCAACGGAAAAGCTTGGCC+TGG | 0.534396 | 3.3:-81882630 | None:intergenic |
| GGAAGAAGCCATCGAAGTGA+TGG | 0.535096 | 3.3:+81882581 | MS.gene38584:intron |
| ATGAGGGGAGGAGCATTGAG+GGG | 0.535884 | 3.3:-81887593 | None:intergenic |
| CTCGATGGCGTCCCAGGCAT+AGG | 0.537857 | 3.3:+81894799 | MS.gene38584:CDS |
| TCTAAATTTACCTTTCAGGA+AGG | 0.539587 | 3.3:-81882728 | None:intergenic |
| TGATGGAGAACAGACCATCA+TGG | 0.540649 | 3.3:+81882598 | MS.gene38584:CDS |
| CCGGCGACTGAATTGCGACC+AGG | 0.542033 | 3.3:-81881613 | None:intergenic |
| TCTGTTCTCCATCACTTCGA+TGG | 0.545443 | 3.3:-81882589 | None:intergenic |
| TGATGAGGGGAGGAGCATTG+AGG | 0.545939 | 3.3:-81887595 | None:intergenic |
| TTTGTTTGCTCCTTCCTGAA+AGG | 0.546372 | 3.3:+81882718 | MS.gene38584:CDS |
| CTTACATTCTGCTGGCATAG+AGG | 0.546875 | 3.3:+81885856 | MS.gene38584:CDS |
| ATTGCGACCAGGAACGCTGC+CGG | 0.547512 | 3.3:-81881602 | None:intergenic |
| ATGAGTCGCTATGCTAGTGC+TGG | 0.548674 | 3.3:+81885785 | MS.gene38584:CDS |
| CCGTACAGAACATTGCTCCT+AGG | 0.551992 | 3.3:-81884461 | None:intergenic |
| TAGGGTGATTCTGGTATGAA+GGG | 0.552990 | 3.3:+81889626 | MS.gene38584:intron |
| TGATATACGGAAATTTATCA+AGG | 0.557611 | 3.3:+81889348 | MS.gene38584:CDS |
| TTGTTCAATAGTTGGATGCA+AGG | 0.561289 | 3.3:+81893187 | MS.gene38584:intron |
| GCTTTCCAAGATTAATACGT+GGG | 0.562344 | 3.3:+81885733 | MS.gene38584:intron |
| GATGGAGAACAGACCATCAT+GGG | 0.563202 | 3.3:+81882599 | MS.gene38584:CDS |
| TTCAGGCTTCATGACAAAAG+TGG | 0.563894 | 3.3:+81893805 | MS.gene38584:intron |
| TTTCTCCCCAGTCAAAAGGC+AGG | 0.564803 | 3.3:-81884643 | None:intergenic |
| GAGTTGGATAACAACATTCG+TGG | 0.564919 | 3.3:+81885002 | MS.gene38584:CDS |
| TAGGGGAAGCATTGACACGC+TGG | 0.565015 | 3.3:+81883778 | MS.gene38584:intron |
| TGGACCTCAAGACTGGGGTA+AGG | 0.566161 | 3.3:+81884496 | MS.gene38584:CDS |
| CCTAGGAGCAATGTTCTGTA+CGG | 0.567471 | 3.3:+81884461 | MS.gene38584:CDS |
| GATTGATGGACCTCAAGACT+GGG | 0.569307 | 3.3:+81884490 | MS.gene38584:CDS |
| ATGCCGGTACTTTATCGCAT+TGG | 0.570122 | 3.3:-81893235 | None:intergenic |
| AGTCGCTATGCTAGTGCTGG+TGG | 0.571734 | 3.3:+81885788 | MS.gene38584:CDS |
| ATATATTTATTACCCTGATG+AGG | 0.573951 | 3.3:-81887610 | None:intergenic |
| CCTGGTCGCAATTCAGTCGC+CGG | 0.574029 | 3.3:+81881613 | MS.gene38584:CDS |
| CCTGATGACATCGTCCTCGA+TGG | 0.574785 | 3.3:+81894784 | MS.gene38584:CDS |
| GAATATGGCCATACTCGCTA+CGG | 0.579593 | 3.3:+81893047 | MS.gene38584:CDS |
| ATTGCAGAGCCTTGGGACTG+TGG | 0.586596 | 3.3:+81888527 | MS.gene38584:CDS |
| GGACCTCAAGACTGGGGTAA+GGG | 0.586825 | 3.3:+81884497 | MS.gene38584:CDS |
| ATACACCCAACGGAAAAGCT+TGG | 0.587014 | 3.3:-81882635 | None:intergenic |
| ATACTGTGTCGAGGAACTGA+TGG | 0.587782 | 3.3:+81887566 | MS.gene38584:CDS |
| ATACCAAGCTCTAGAAGGTG+TGG | 0.587908 | 3.3:-81885230 | None:intergenic |
| ATACTCCTCCATTCTTCTGG+AGG | 0.589952 | 3.3:+81894843 | MS.gene38584:CDS |
| TGTACGTTTCTCCTATGCCT+GGG | 0.590508 | 3.3:-81894810 | None:intergenic |
| CTATCTTGGTGTAATTGAGA+AGG | 0.591718 | 3.3:+81885028 | MS.gene38584:CDS |
| AACAAGCGTAGACCATATCA+TGG | 0.593650 | 3.3:+81890397 | MS.gene38584:CDS |
| AGAATTAGATCCATAACCAC+AGG | 0.596709 | 3.3:-81887029 | None:intergenic |
| GGAAGCATTGACACGCTGGA+TGG | 0.602937 | 3.3:+81883782 | MS.gene38584:CDS |
| GCAGAGCCTTGGGACTGTGG+AGG | 0.605251 | 3.3:+81888530 | MS.gene38584:CDS |
| ATTCATCCATTGTAAATGCA+CGG | 0.607129 | 3.3:-81884974 | None:intergenic |
| ATCCTCATTCAAACAAAACA+GGG | 0.607175 | 3.3:+81883828 | MS.gene38584:CDS |
| TGTCCCTTACCCCAGTCTTG+AGG | 0.607996 | 3.3:-81884500 | None:intergenic |
| AACGAAGCTAATGGGGAAGG+TGG | 0.609048 | 3.3:+81890563 | MS.gene38584:CDS |
| CAATAGTTGGATGCAAGGAA+GGG | 0.613913 | 3.3:+81893192 | MS.gene38584:intron |
| TGCGAAGAGTGTAGATTGAG+TGG | 0.614060 | 3.3:-81881563 | None:intergenic |
| ACGGAAATAACAATAGCTAT+GGG | 0.614490 | 3.3:+81893066 | MS.gene38584:CDS |
| AGCATTGACACGCTGGATGG+TGG | 0.615714 | 3.3:+81883785 | MS.gene38584:CDS |
| CACAACGAAGCTAATGGGGA+AGG | 0.616197 | 3.3:+81890560 | MS.gene38584:CDS |
| GAACACCGATGATGCTAATG+GGG | 0.616909 | 3.3:+81893021 | MS.gene38584:CDS |
| GTCACTGAGTATCATGTGGA+CGG | 0.618052 | 3.3:+81887521 | MS.gene38584:CDS |
| TGTCTACAATCATACGAATG+AGG | 0.619074 | 3.3:+81886026 | MS.gene38584:CDS |
| CAATCTTCCAAATATTGCCG+AGG | 0.622915 | 3.3:+81884670 | MS.gene38584:CDS |
| CAATGCTCCTCCCCTCATCA+GGG | 0.623176 | 3.3:+81887598 | MS.gene38584:CDS |
| TATTACATGCTGGACGACAA+AGG | 0.623828 | 3.3:+81886488 | MS.gene38584:CDS |
| TCCAAATCCCAGAGATCACA+TGG | 0.625369 | 3.3:+81885310 | MS.gene38584:CDS |
| TTTATTACCCTGATGAGGGG+AGG | 0.628848 | 3.3:-81887605 | None:intergenic |
| CTATGCCTGGGACGCCATCG+AGG | 0.629067 | 3.3:-81894798 | None:intergenic |
| AGAGCTTGGTATCAATGCAG+TGG | 0.629888 | 3.3:+81885241 | MS.gene38584:CDS |
| GTAGCACAACGAAGCTAATG+GGG | 0.632956 | 3.3:+81890556 | MS.gene38584:intron |
| TTATGGTCGTGCTCAAGAAG+AGG | 0.634354 | 3.3:+81881952 | MS.gene38584:CDS |
| TGCTTTCCAAGATTAATACG+TGG | 0.636373 | 3.3:+81885732 | MS.gene38584:intron |
| TACCAAGCTCTAGAAGGTGT+GGG | 0.640740 | 3.3:-81885229 | None:intergenic |
| GTGTATCACAAGTCGACAGT+GGG | 0.642735 | 3.3:+81882652 | MS.gene38584:CDS |
| TATAGACCTCCACAGTCCCA+AGG | 0.643542 | 3.3:-81888536 | None:intergenic |
| CTTGGCCTCCAGAAGAATGG+AGG | 0.645128 | 3.3:-81894848 | None:intergenic |
| ATATTTATTACCCTGATGAG+GGG | 0.649073 | 3.3:-81887608 | None:intergenic |
| CTTTCCAAGATTAATACGTG+GGG | 0.654915 | 3.3:+81885734 | MS.gene38584:intron |
| TATCTGGCACATATGCATTG+AGG | 0.655122 | 3.3:+81883853 | MS.gene38584:CDS |
| CTCGCAAGTATACTGTGTCG+AGG | 0.655283 | 3.3:+81887557 | MS.gene38584:CDS |
| AGGGTGATTCTGGTATGAAG+GGG | 0.656811 | 3.3:+81889627 | MS.gene38584:intron |
| AGGCTTCATGACAAAAGTGG+AGG | 0.660645 | 3.3:+81893808 | MS.gene38584:intron |
| GAATGTCCGTGCATTTACAA+TGG | 0.662609 | 3.3:+81884968 | MS.gene38584:CDS |
| TAGGGTCACTGAGTATCATG+TGG | 0.663262 | 3.3:+81887517 | MS.gene38584:intron |
| GGTGTATCACAAGTCGACAG+TGG | 0.664253 | 3.3:+81882651 | MS.gene38584:CDS |
| ATTGAATTGTAACCATCCTG+TGG | 0.664637 | 3.3:+81887013 | MS.gene38584:CDS |
| AAGCAAATCGAATTATAGTG+AGG | 0.679023 | 3.3:+81881788 | MS.gene38584:CDS |
| TCGACTTGTGATACACCCAA+CGG | 0.687514 | 3.3:-81882645 | None:intergenic |
| TCCTCATTCAAACAAAACAG+GGG | 0.687927 | 3.3:+81883829 | MS.gene38584:CDS |
| AACACCGATGATGCTAATGG+GGG | 0.689567 | 3.3:+81893022 | MS.gene38584:CDS |
| TTAGATCCATAACCACAGGA+TGG | 0.694789 | 3.3:-81887025 | None:intergenic |
| GAAGAGTGTAGATTGAGTGG+CGG | 0.727249 | 3.3:-81881560 | None:intergenic |
| ATTGATGGACCTCAAGACTG+GGG | 0.734499 | 3.3:+81884491 | MS.gene38584:CDS |
| ATGCTAGTATAAGAGCTCTG+CGG | 0.779840 | 3.3:+81892374 | MS.gene38584:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81881526 | 81894876 | 81881526 | ID=MS.gene38584 |
| chr3.3 | mRNA | 81881526 | 81894876 | 81881526 | ID=MS.gene38584.t1;Parent=MS.gene38584 |
| chr3.3 | exon | 81881526 | 81881644 | 81881526 | ID=MS.gene38584.t1.exon1;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81881526 | 81881644 | 81881526 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81881761 | 81881809 | 81881761 | ID=MS.gene38584.t1.exon2;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81881761 | 81881809 | 81881761 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81881899 | 81881982 | 81881899 | ID=MS.gene38584.t1.exon3;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81881899 | 81881982 | 81881899 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81882582 | 81882739 | 81882582 | ID=MS.gene38584.t1.exon4;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81882582 | 81882739 | 81882582 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81883781 | 81883874 | 81883781 | ID=MS.gene38584.t1.exon5;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81883781 | 81883874 | 81883781 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81884455 | 81884691 | 81884455 | ID=MS.gene38584.t1.exon6;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81884455 | 81884691 | 81884455 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81884945 | 81885049 | 81884945 | ID=MS.gene38584.t1.exon7;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81884945 | 81885049 | 81884945 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81885227 | 81885331 | 81885227 | ID=MS.gene38584.t1.exon8;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81885227 | 81885331 | 81885227 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81885743 | 81885877 | 81885743 | ID=MS.gene38584.t1.exon9;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81885743 | 81885877 | 81885743 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81886012 | 81886098 | 81886012 | ID=MS.gene38584.t1.exon10;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81886012 | 81886098 | 81886012 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81886485 | 81886536 | 81886485 | ID=MS.gene38584.t1.exon11;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81886485 | 81886536 | 81886485 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81887006 | 81887069 | 81887006 | ID=MS.gene38584.t1.exon12;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81887006 | 81887069 | 81887006 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81887520 | 81887619 | 81887520 | ID=MS.gene38584.t1.exon13;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81887520 | 81887619 | 81887520 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81888488 | 81888588 | 81888488 | ID=MS.gene38584.t1.exon14;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81888488 | 81888588 | 81888488 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81889318 | 81889369 | 81889318 | ID=MS.gene38584.t1.exon15;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81889318 | 81889369 | 81889318 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81889629 | 81889691 | 81889629 | ID=MS.gene38584.t1.exon16;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81889629 | 81889691 | 81889629 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81890394 | 81890483 | 81890394 | ID=MS.gene38584.t1.exon17;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81890394 | 81890483 | 81890394 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81890560 | 81890632 | 81890560 | ID=MS.gene38584.t1.exon18;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81890560 | 81890632 | 81890560 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81892362 | 81892441 | 81892362 | ID=MS.gene38584.t1.exon19;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81892362 | 81892441 | 81892362 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81893020 | 81893124 | 81893020 | ID=MS.gene38584.t1.exon20;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81893020 | 81893124 | 81893020 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81893198 | 81893296 | 81893198 | ID=MS.gene38584.t1.exon21;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81893198 | 81893296 | 81893198 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81893406 | 81893467 | 81893406 | ID=MS.gene38584.t1.exon22;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81893406 | 81893467 | 81893406 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81893810 | 81893918 | 81893810 | ID=MS.gene38584.t1.exon23;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81893810 | 81893918 | 81893810 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| chr3.3 | exon | 81894763 | 81894876 | 81894763 | ID=MS.gene38584.t1.exon24;Parent=MS.gene38584.t1 |
| chr3.3 | CDS | 81894763 | 81894876 | 81894763 | ID=cds.MS.gene38584.t1;Parent=MS.gene38584.t1 |
| Gene Sequence |
| Protein sequence |
