Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013128.t1 | XP_003602838.2 | 96.8 | 781 | 20 | 2 | 1 | 780 | 1 | 777 | 0.00E+00 | 1569.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013128.t1 | Q9M0S5 | 72.8 | 762 | 195 | 3 | 19 | 779 | 14 | 764 | 0.0e+00 | 1177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013128.t1 | G7J3Z4 | 96.8 | 781 | 20 | 2 | 1 | 780 | 1 | 777 | 0.0e+00 | 1569.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013128 | MS.gene55868 | PPI |
| MS.gene013128 | MS.gene06191 | PPI |
| MS.gene013128 | MS.gene049005 | PPI |
| MS.gene20174 | MS.gene013128 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013128.t1 | MTR_3g099500 | 97.567 | 781 | 14 | 2 | 1 | 780 | 1 | 777 | 0.0 | 1578 |
| MS.gene013128.t1 | MTR_3g099500 | 95.489 | 798 | 14 | 3 | 1 | 780 | 1 | 794 | 0.0 | 1570 |
| MS.gene013128.t1 | MTR_8g101490 | 44.565 | 736 | 352 | 16 | 84 | 776 | 58 | 780 | 0.0 | 600 |
| MS.gene013128.t1 | MTR_8g101490 | 48.211 | 587 | 267 | 12 | 84 | 644 | 58 | 633 | 0.0 | 533 |
| MS.gene013128.t1 | MTR_7g094560 | 37.092 | 674 | 352 | 20 | 104 | 758 | 203 | 823 | 3.85e-124 | 394 |
| MS.gene013128.t1 | MTR_1g090693 | 28.354 | 395 | 232 | 14 | 169 | 519 | 235 | 622 | 1.63e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013128.t1 | AT4G09020 | 71.742 | 775 | 207 | 3 | 6 | 779 | 1 | 764 | 0.0 | 1177 |
| MS.gene013128.t1 | AT2G39930 | 44.875 | 722 | 335 | 16 | 102 | 776 | 70 | 775 | 0.0 | 584 |
| MS.gene013128.t1 | AT2G39930 | 48.087 | 601 | 268 | 12 | 102 | 672 | 70 | 656 | 0.0 | 546 |
| MS.gene013128.t1 | AT2G39930 | 47.532 | 547 | 243 | 12 | 102 | 618 | 70 | 602 | 1.00e-161 | 484 |
| MS.gene013128.t1 | AT1G03310 | 34.728 | 717 | 357 | 25 | 104 | 778 | 230 | 877 | 1.30e-112 | 363 |
| MS.gene013128.t1 | AT1G03310 | 34.728 | 717 | 357 | 25 | 104 | 778 | 230 | 877 | 1.30e-112 | 363 |
| MS.gene013128.t1 | AT5G04360 | 27.294 | 425 | 226 | 18 | 108 | 486 | 207 | 594 | 4.51e-23 | 105 |
| MS.gene013128.t1 | AT5G04360 | 27.294 | 425 | 226 | 18 | 108 | 486 | 207 | 594 | 4.51e-23 | 105 |
Find 187 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATACATAGGTTATTT+TGG | 0.101279 | 3.1:+79559617 | MS.gene013128:intron |
| ATTGAAGGTCGAAGATATTT+TGG | 0.134802 | 3.1:+79558186 | MS.gene013128:CDS |
| AGCTTTGCAACTCGTGTTTC+TGG | 0.153163 | 3.1:+79563260 | MS.gene013128:CDS |
| AATATCTAAATTTACCTTTC+AGG | 0.162754 | 3.1:-79556308 | None:intergenic |
| GAAGAATTACCCGAAATTTC+CGG | 0.220180 | 3.1:-79555207 | None:intergenic |
| AATTCAGTCGCCGGAAATTT+CGG | 0.228870 | 3.1:+79555197 | MS.gene013128:CDS |
| AGGAAATTGTCTAAGTTTCT+AGG | 0.236363 | 3.1:+79558219 | MS.gene013128:CDS |
| ATTCAGTCGCCGGAAATTTC+GGG | 0.240981 | 3.1:+79555198 | MS.gene013128:CDS |
| AAGAATACCTCGGCAATATT+TGG | 0.242789 | 3.1:-79558294 | None:intergenic |
| CACATGTCCTAGGGTGATTC+TGG | 0.269164 | 3.1:+79563227 | MS.gene013128:intron |
| CAAGGAAGGGCGATCACTTT+AGG | 0.274375 | 3.1:+79566809 | MS.gene013128:CDS |
| TGTTATTTCCGTAGCGAGTA+TGG | 0.279104 | 3.1:-79566659 | None:intergenic |
| ATTTCGTGGCATAGATAATA+AGG | 0.302515 | 3.1:+79559695 | MS.gene013128:CDS |
| CAAACAAAACAGGGGATATC+TGG | 0.318632 | 3.1:+79557453 | MS.gene013128:CDS |
| TCCATACTCCTCCATTCTTC+TGG | 0.326335 | 3.1:+79568440 | MS.gene013128:CDS |
| ACCATGTGATCTCTGGGATT+TGG | 0.340416 | 3.1:-79558930 | None:intergenic |
| TAACCATTTGCTTCAACTCT+TGG | 0.345521 | 3.1:-79559447 | None:intergenic |
| GGAAATATCGTGATGATATA+CGG | 0.347322 | 3.1:+79562945 | MS.gene013128:CDS |
| TCAATGCTCCTCCCCTCATC+AGG | 0.348034 | 3.1:+79561209 | MS.gene013128:CDS |
| AATGCTAATGCTAATGCTTA+TGG | 0.348338 | 3.1:+79555516 | MS.gene013128:CDS |
| GATCCTCATTCAAACAAAAC+AGG | 0.359852 | 3.1:+79557443 | MS.gene013128:CDS |
| TAACATGGCATGAAGACAAT+TGG | 0.360246 | 3.1:+79567017 | MS.gene013128:CDS |
| TTGTAGCACAACGAAGCTAA+TGG | 0.370505 | 3.1:+79564161 | MS.gene013128:intron |
| TCCGGCGCCGGCATCGTTCC+TGG | 0.375249 | 3.1:+79555170 | MS.gene013128:CDS |
| TGTAGCACAACGAAGCTAAT+GGG | 0.376583 | 3.1:+79564162 | MS.gene013128:intron |
| CCTTACACTACTTCATTTCG+TGG | 0.377825 | 3.1:+79559681 | MS.gene013128:CDS |
| ATAATTTACCATGTGATCTC+TGG | 0.381085 | 3.1:-79558937 | None:intergenic |
| GTAGTCCATACCAATGTCTT+AGG | 0.389694 | 3.1:-79560670 | None:intergenic |
| TTCTTGAAGCGCAGAGTAAT+GGG | 0.391645 | 3.1:-79555112 | None:intergenic |
| GGGAACACCGATGATGCTAA+TGG | 0.391733 | 3.1:+79566623 | MS.gene013128:intron |
| CAAGAGAAGGTTTCAAGCTT+AGG | 0.393866 | 3.1:+79555475 | MS.gene013128:CDS |
| TTGTAACCATCCTGTGGTTA+TGG | 0.397934 | 3.1:+79560631 | MS.gene013128:CDS |
| AATGAAGTAGTGTAAGGATT+AGG | 0.400159 | 3.1:-79559675 | None:intergenic |
| AACATTCGTGGAAGCTATCT+TGG | 0.400532 | 3.1:+79558631 | MS.gene013128:CDS |
| GATGAGGGGAGGAGCATTGA+GGG | 0.404227 | 3.1:-79561206 | None:intergenic |
| GATGCAATGATAACTTTAGT+TGG | 0.408830 | 3.1:+79564201 | MS.gene013128:CDS |
| CAACTTCTGCGATCAAAACT+TGG | 0.411633 | 3.1:-79568466 | None:intergenic |
| TAAAATTATTGCAGAGCCTT+GGG | 0.413250 | 3.1:+79562130 | MS.gene013128:CDS |
| AAGTTTAGTAAGCAAACATC+TGG | 0.417882 | 3.1:+79555340 | MS.gene013128:CDS |
| ATCGTCCTCGATGGCGTCCC+AGG | 0.419220 | 3.1:+79568393 | MS.gene013128:CDS |
| CTCTATGCCAGCAGAATGTA+AGG | 0.420920 | 3.1:-79559473 | None:intergenic |
| ACAAAATTAATACCATGATA+TGG | 0.425640 | 3.1:-79564016 | None:intergenic |
| TCCAGAAGAATGGAGGAGTA+TGG | 0.426188 | 3.1:-79568441 | None:intergenic |
| AGATTGATGGACCTCAAGAC+TGG | 0.429638 | 3.1:+79558106 | MS.gene013128:CDS |
| CATTGATACCAAGCTCTAGA+AGG | 0.430604 | 3.1:-79558854 | None:intergenic |
| GGAACACCGATGATGCTAAT+GGG | 0.432770 | 3.1:+79566624 | MS.gene013128:CDS |
| AGTCTTGAGGTCCATCAATC+TGG | 0.432957 | 3.1:-79558104 | None:intergenic |
| AACCATTTGCTTCAACTCTT+GGG | 0.434675 | 3.1:-79559446 | None:intergenic |
| GCACTAGCATAGCGACTCAT+AGG | 0.441731 | 3.1:-79559400 | None:intergenic |
| AATGGGGAAGGTGGAAATGA+TGG | 0.441846 | 3.1:+79564179 | MS.gene013128:CDS |
| AAGTATTACCGGTCCCAATT+CGG | 0.443400 | 3.1:-79562185 | None:intergenic |
| AACTCTTGGGAAGCATTAGC+TGG | 0.453115 | 3.1:-79559433 | None:intergenic |
| CTGTACGTTTCTCCTATGCC+TGG | 0.454517 | 3.1:-79568411 | None:intergenic |
| TCTTGTTTCATACAACTTCA+AGG | 0.458629 | 3.1:+79564069 | MS.gene013128:CDS |
| GTAAAATTATTGCAGAGCCT+TGG | 0.459216 | 3.1:+79562129 | MS.gene013128:CDS |
| CCATCGAGGACGATGTCATC+AGG | 0.462451 | 3.1:-79568384 | None:intergenic |
| GATGCCGGCGCCGGAGAAAA+CGG | 0.463970 | 3.1:-79555162 | None:intergenic |
| TGAGGGGAGGAGCATTGAGG+GGG | 0.464609 | 3.1:-79561204 | None:intergenic |
| TACGGAAATAACAATAGCTA+TGG | 0.465711 | 3.1:+79566669 | MS.gene013128:CDS |
| TCTAGCATTAATGATATCTC+AGG | 0.466140 | 3.1:+79566027 | MS.gene013128:CDS |
| TCATTGTGCAGGATCTTCCT+AGG | 0.466830 | 3.1:+79558061 | MS.gene013128:intron |
| ATCTCATCAAACTCAAAGAT+AGG | 0.469010 | 3.1:-79558891 | None:intergenic |
| CTAGGGTGATTCTGGTATGA+AGG | 0.470733 | 3.1:+79563235 | MS.gene013128:intron |
| GTTCTTGAAGCGCAGAGTAA+TGG | 0.470761 | 3.1:-79555113 | None:intergenic |
| CCTTATGCAAAACTAATTGA+AGG | 0.472436 | 3.1:+79558171 | MS.gene013128:CDS |
| TATCTTTGAGTTTGATGAGA+TGG | 0.479374 | 3.1:+79558893 | MS.gene013128:CDS |
| CGCTATGCTAGTGCTGGTGG+AGG | 0.480924 | 3.1:+79559409 | MS.gene013128:CDS |
| AACATGGCATGAAGACAATT+GGG | 0.484123 | 3.1:+79567018 | MS.gene013128:CDS |
| GTAGGTGGGCTGAATGGAAT+GGG | 0.489614 | 3.1:+79562924 | MS.gene013128:intron |
| GTTAAAGCCTTACATTCTGC+TGG | 0.489939 | 3.1:+79559466 | MS.gene013128:CDS |
| GGACAATTGCTGAACTTCTC+CGG | 0.490724 | 3.1:+79560121 | MS.gene013128:CDS |
| ACCAGGAACGATGCCGGCGC+CGG | 0.491472 | 3.1:-79555171 | None:intergenic |
| CCACGAAATGAAGTAGTGTA+AGG | 0.493976 | 3.1:-79559681 | None:intergenic |
| TTCCCAAGAGTTGAAGCAAA+TGG | 0.494723 | 3.1:+79559444 | MS.gene013128:CDS |
| AAACTTGGCCTCCAGAAGAA+TGG | 0.496571 | 3.1:-79568451 | None:intergenic |
| TGTGGAGGTCTATATCTTGT+TGG | 0.496751 | 3.1:+79562155 | MS.gene013128:CDS |
| CCATCATGGGAGACTTCTCC+AGG | 0.497759 | 3.1:+79556188 | MS.gene013128:CDS |
| GATAACTTTAGTTGGAATTG+TGG | 0.498203 | 3.1:+79564209 | MS.gene013128:CDS |
| GGACCTCAAGACTGGGGTAA+GGG | 0.501748 | 3.1:+79558114 | MS.gene013128:CDS |
| TCTATAGGTTTATTACATGC+TGG | 0.503472 | 3.1:+79560090 | MS.gene013128:intron |
| TAATTTACCATGTGATCTCT+GGG | 0.505388 | 3.1:-79558936 | None:intergenic |
| ATCCCACACCTTCTAGAGCT+TGG | 0.506100 | 3.1:+79558846 | MS.gene013128:CDS |
| GTATAAGAGCTCTGCGGTCG+AGG | 0.507547 | 3.1:+79565987 | MS.gene013128:CDS |
| GGCATAGGTTAGACAAGAGA+AGG | 0.508231 | 3.1:+79555462 | MS.gene013128:intron |
| AAAGATAAAATTACCACAGC+CGG | 0.511082 | 3.1:-79560140 | None:intergenic |
| TGCTCAAGAAGAGGTCCTTA+AGG | 0.512559 | 3.1:+79555542 | MS.gene013128:CDS |
| GAGGGGAGGAGCATTGAGGG+GGG | 0.513118 | 3.1:-79561203 | None:intergenic |
| CTGTACGGATACCAGATTGA+TGG | 0.514119 | 3.1:+79558093 | MS.gene013128:CDS |
| TGTAGGTGGGCTGAATGGAA+TGG | 0.514806 | 3.1:+79562923 | MS.gene013128:intron |
| GGATGGTGGTATGATAGAAC+TGG | 0.516922 | 3.1:+79557415 | MS.gene013128:CDS |
| TCAATAGTTGGATGCAAGGA+AGG | 0.517959 | 3.1:+79566795 | MS.gene013128:intron |
| TTCTTGACAGCCTAAGACAT+TGG | 0.520511 | 3.1:+79560660 | MS.gene013128:CDS |
| TGGTATGATAGAACTGGCTT+TGG | 0.523068 | 3.1:+79557421 | MS.gene013128:CDS |
| GTGTATCACAAGTCGACAAT+GGG | 0.523496 | 3.1:+79556228 | MS.gene013128:CDS |
| TTGCTGAACTTCTCCGGCTG+TGG | 0.523558 | 3.1:+79560127 | MS.gene013128:CDS |
| TGGACCTCAAGACTGGGGTA+AGG | 0.527122 | 3.1:+79558113 | MS.gene013128:CDS |
| TATATTTATTACCCTGATGA+GGG | 0.528876 | 3.1:-79561221 | None:intergenic |
| AATGGATGAATCTAGTGAGT+TGG | 0.529017 | 3.1:+79558603 | MS.gene013128:CDS |
| TTTGATGTAGGTGGGCTGAA+TGG | 0.530787 | 3.1:+79562918 | MS.gene013128:intron |
| CCTGGAGAAGTCTCCCATGA+TGG | 0.533738 | 3.1:-79556188 | None:intergenic |
| TCTCCAATGCGATAAAGTAC+CGG | 0.534057 | 3.1:+79566836 | MS.gene013128:CDS |
| CCCAACGGAAAAGCTTGGCC+TGG | 0.534396 | 3.1:-79556206 | None:intergenic |
| GGAAGAAGCCATCGAAGTGA+TGG | 0.535096 | 3.1:+79556157 | MS.gene013128:intron |
| ATGAGGGGAGGAGCATTGAG+GGG | 0.535884 | 3.1:-79561205 | None:intergenic |
| CTCGATGGCGTCCCAGGCAT+AGG | 0.537857 | 3.1:+79568399 | MS.gene013128:CDS |
| TCTAAATTTACCTTTCAGGA+AGG | 0.539587 | 3.1:-79556304 | None:intergenic |
| TGATGGAGAACAGACCATCA+TGG | 0.540649 | 3.1:+79556174 | MS.gene013128:CDS |
| CCGGCGACTGAATTGCGACC+AGG | 0.542033 | 3.1:-79555188 | None:intergenic |
| CCTGATGACATCGTCCTCGA+TGG | 0.545315 | 3.1:+79568384 | MS.gene013128:CDS |
| TCTGTTCTCCATCACTTCGA+TGG | 0.545443 | 3.1:-79556165 | None:intergenic |
| TGATGAGGGGAGGAGCATTG+AGG | 0.545939 | 3.1:-79561207 | None:intergenic |
| TTTGTTTGCTCCTTCCTGAA+AGG | 0.546372 | 3.1:+79556294 | MS.gene013128:CDS |
| CTTACATTCTGCTGGCATAG+AGG | 0.546875 | 3.1:+79559474 | MS.gene013128:CDS |
| ATGAGTCGCTATGCTAGTGC+TGG | 0.548674 | 3.1:+79559403 | MS.gene013128:CDS |
| GACCTCAAGACTGGGGTAAG+GGG | 0.549559 | 3.1:+79558115 | MS.gene013128:CDS |
| CCGTACAGAACATTGCTCCT+AGG | 0.551992 | 3.1:-79558078 | None:intergenic |
| TAGGGTGATTCTGGTATGAA+GGG | 0.552990 | 3.1:+79563236 | MS.gene013128:intron |
| TGATATACGGAAATTTATCA+AGG | 0.557611 | 3.1:+79562958 | MS.gene013128:CDS |
| TTGTTCAATAGTTGGATGCA+AGG | 0.561289 | 3.1:+79566791 | MS.gene013128:intron |
| GCTTTCCAAGATTAATACGT+GGG | 0.562344 | 3.1:+79559351 | MS.gene013128:intron |
| GATGGAGAACAGACCATCAT+GGG | 0.563202 | 3.1:+79556175 | MS.gene013128:CDS |
| ATTGCGACCAGGAACGATGC+CGG | 0.563882 | 3.1:-79555177 | None:intergenic |
| TTCAGGCTTCATGACAAAAG+TGG | 0.563894 | 3.1:+79567405 | MS.gene013128:intron |
| TTTCTCCCCAGTCAAAAGGC+AGG | 0.564803 | 3.1:-79558260 | None:intergenic |
| GAGTTGGATAACAACATTCG+TGG | 0.564919 | 3.1:+79558619 | MS.gene013128:CDS |
| TAGGGGAAGCATTGACACGC+TGG | 0.565015 | 3.1:+79557394 | MS.gene013128:intron |
| CCTAGGAGCAATGTTCTGTA+CGG | 0.567471 | 3.1:+79558078 | MS.gene013128:CDS |
| GATTGATGGACCTCAAGACT+GGG | 0.569307 | 3.1:+79558107 | MS.gene013128:CDS |
| ATGCCGGTACTTTATCGCAT+TGG | 0.570122 | 3.1:-79566839 | None:intergenic |
| AGTCGCTATGCTAGTGCTGG+TGG | 0.571734 | 3.1:+79559406 | MS.gene013128:CDS |
| ATATATTTATTACCCTGATG+AGG | 0.573951 | 3.1:-79561222 | None:intergenic |
| CCTGGTCGCAATTCAGTCGC+CGG | 0.574029 | 3.1:+79555188 | MS.gene013128:CDS |
| GAATATGGCCATACTCGCTA+CGG | 0.579593 | 3.1:+79566651 | MS.gene013128:CDS |
| ATTGCAGAGCCTTGGGACTG+TGG | 0.586596 | 3.1:+79562137 | MS.gene013128:CDS |
| ATACACCCAACGGAAAAGCT+TGG | 0.587014 | 3.1:-79556211 | None:intergenic |
| ATACTGTGTCGAGGAACTGA+TGG | 0.587782 | 3.1:+79561178 | MS.gene013128:CDS |
| ATACCAAGCTCTAGAAGGTG+TGG | 0.587908 | 3.1:-79558849 | None:intergenic |
| GGTGTATCACAAGTCGACAA+TGG | 0.589086 | 3.1:+79556227 | MS.gene013128:CDS |
| ATACTCCTCCATTCTTCTGG+AGG | 0.589952 | 3.1:+79568443 | MS.gene013128:CDS |
| TGTACGTTTCTCCTATGCCT+GGG | 0.590508 | 3.1:-79568410 | None:intergenic |
| CTATCTTGGTGTAATTGAGA+AGG | 0.591718 | 3.1:+79558645 | MS.gene013128:CDS |
| TGCCCCTTACCCCAGTCTTG+AGG | 0.593507 | 3.1:-79558117 | None:intergenic |
| AACAAGCGTAGACCATATCA+TGG | 0.593650 | 3.1:+79564004 | MS.gene013128:CDS |
| AGAATTAGATCCATAACCAC+AGG | 0.596709 | 3.1:-79560641 | None:intergenic |
| GGAAGCATTGACACGCTGGA+TGG | 0.602937 | 3.1:+79557398 | MS.gene013128:CDS |
| GCAGAGCCTTGGGACTGTGG+AGG | 0.605251 | 3.1:+79562140 | MS.gene013128:CDS |
| ATTCATCCATTGTAAATGCA+CGG | 0.607129 | 3.1:-79558591 | None:intergenic |
| ATCCTCATTCAAACAAAACA+GGG | 0.607175 | 3.1:+79557444 | MS.gene013128:CDS |
| AACGAAGCTAATGGGGAAGG+TGG | 0.609048 | 3.1:+79564170 | MS.gene013128:CDS |
| CAATAGTTGGATGCAAGGAA+GGG | 0.613913 | 3.1:+79566796 | MS.gene013128:intron |
| TGCGAAGAGTGTAGATTGAG+TGG | 0.614060 | 3.1:-79555138 | None:intergenic |
| ACGGAAATAACAATAGCTAT+GGG | 0.614490 | 3.1:+79566670 | MS.gene013128:CDS |
| AGCATTGACACGCTGGATGG+TGG | 0.615714 | 3.1:+79557401 | MS.gene013128:CDS |
| CACAACGAAGCTAATGGGGA+AGG | 0.616197 | 3.1:+79564167 | MS.gene013128:CDS |
| GAACACCGATGATGCTAATG+GGG | 0.616909 | 3.1:+79566625 | MS.gene013128:CDS |
| GTCACTGAGTATCATGTGGA+CGG | 0.618052 | 3.1:+79561133 | MS.gene013128:CDS |
| TGTCTACAATCATACGAATG+AGG | 0.619074 | 3.1:+79559644 | MS.gene013128:CDS |
| CAATCTTCCAAATATTGCCG+AGG | 0.622915 | 3.1:+79558287 | MS.gene013128:CDS |
| CAATGCTCCTCCCCTCATCA+GGG | 0.623176 | 3.1:+79561210 | MS.gene013128:CDS |
| TATTACATGCTGGACGACAA+AGG | 0.623828 | 3.1:+79560100 | MS.gene013128:CDS |
| TCCAAATCCCAGAGATCACA+TGG | 0.625369 | 3.1:+79558929 | MS.gene013128:CDS |
| TTTATTACCCTGATGAGGGG+AGG | 0.628848 | 3.1:-79561217 | None:intergenic |
| CTATGCCTGGGACGCCATCG+AGG | 0.629067 | 3.1:-79568398 | None:intergenic |
| AGAGCTTGGTATCAATGCAG+TGG | 0.629888 | 3.1:+79558860 | MS.gene013128:CDS |
| GTAGCACAACGAAGCTAATG+GGG | 0.632956 | 3.1:+79564163 | MS.gene013128:intron |
| TTATGGTCGTGCTCAAGAAG+AGG | 0.634354 | 3.1:+79555533 | MS.gene013128:CDS |
| TGCTTTCCAAGATTAATACG+TGG | 0.636373 | 3.1:+79559350 | MS.gene013128:intron |
| TACCAAGCTCTAGAAGGTGT+GGG | 0.640740 | 3.1:-79558848 | None:intergenic |
| TATAGACCTCCACAGTCCCA+AGG | 0.643542 | 3.1:-79562146 | None:intergenic |
| CTTGGCCTCCAGAAGAATGG+AGG | 0.645128 | 3.1:-79568448 | None:intergenic |
| ATATTTATTACCCTGATGAG+GGG | 0.649073 | 3.1:-79561220 | None:intergenic |
| CTTTCCAAGATTAATACGTG+GGG | 0.654915 | 3.1:+79559352 | MS.gene013128:intron |
| TATCTGGCACATATGCATTG+AGG | 0.655122 | 3.1:+79557469 | MS.gene013128:CDS |
| CTCGCAAGTATACTGTGTCG+AGG | 0.655283 | 3.1:+79561169 | MS.gene013128:CDS |
| AGGGTGATTCTGGTATGAAG+GGG | 0.656811 | 3.1:+79563237 | MS.gene013128:intron |
| AGGCTTCATGACAAAAGTGG+AGG | 0.660645 | 3.1:+79567408 | MS.gene013128:intron |
| GAATGTCCGTGCATTTACAA+TGG | 0.662609 | 3.1:+79558585 | MS.gene013128:CDS |
| TAGGGTCACTGAGTATCATG+TGG | 0.663262 | 3.1:+79561129 | MS.gene013128:intron |
| ATTGAATTGTAACCATCCTG+TGG | 0.664637 | 3.1:+79560625 | MS.gene013128:CDS |
| TCCTCATTCAAACAAAACAG+GGG | 0.687927 | 3.1:+79557445 | MS.gene013128:CDS |
| AACACCGATGATGCTAATGG+GGG | 0.689567 | 3.1:+79566626 | MS.gene013128:CDS |
| TCGACTTGTGATACACCCAA+CGG | 0.689996 | 3.1:-79556221 | None:intergenic |
| TTAGATCCATAACCACAGGA+TGG | 0.694789 | 3.1:-79560637 | None:intergenic |
| AAGCAAATCGAACTATAGTG+AGG | 0.714422 | 3.1:+79555363 | MS.gene013128:CDS |
| GAAGAGTGTAGATTGAGTGG+CGG | 0.727249 | 3.1:-79555135 | None:intergenic |
| ATTGATGGACCTCAAGACTG+GGG | 0.734499 | 3.1:+79558108 | MS.gene013128:CDS |
| ATGCTAGTATAAGAGCTCTG+CGG | 0.779840 | 3.1:+79565981 | MS.gene013128:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79555101 | 79568476 | 79555101 | ID=MS.gene013128 |
| chr3.1 | mRNA | 79555101 | 79568476 | 79555101 | ID=MS.gene013128.t1;Parent=MS.gene013128 |
| chr3.1 | exon | 79555101 | 79555219 | 79555101 | ID=MS.gene013128.t1.exon1;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79555101 | 79555219 | 79555101 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79555336 | 79555384 | 79555336 | ID=MS.gene013128.t1.exon2;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79555336 | 79555384 | 79555336 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79555474 | 79555563 | 79555474 | ID=MS.gene013128.t1.exon3;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79555474 | 79555563 | 79555474 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79556158 | 79556315 | 79556158 | ID=MS.gene013128.t1.exon4;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79556158 | 79556315 | 79556158 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79557397 | 79557490 | 79557397 | ID=MS.gene013128.t1.exon5;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79557397 | 79557490 | 79557397 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79558072 | 79558308 | 79558072 | ID=MS.gene013128.t1.exon6;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79558072 | 79558308 | 79558072 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79558562 | 79558666 | 79558562 | ID=MS.gene013128.t1.exon7;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79558562 | 79558666 | 79558562 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79558846 | 79558950 | 79558846 | ID=MS.gene013128.t1.exon8;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79558846 | 79558950 | 79558846 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79559361 | 79559495 | 79559361 | ID=MS.gene013128.t1.exon9;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79559361 | 79559495 | 79559361 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79559630 | 79559716 | 79559630 | ID=MS.gene013128.t1.exon10;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79559630 | 79559716 | 79559630 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79560097 | 79560148 | 79560097 | ID=MS.gene013128.t1.exon11;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79560097 | 79560148 | 79560097 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79560618 | 79560681 | 79560618 | ID=MS.gene013128.t1.exon12;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79560618 | 79560681 | 79560618 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79561132 | 79561231 | 79561132 | ID=MS.gene013128.t1.exon13;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79561132 | 79561231 | 79561132 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79562098 | 79562198 | 79562098 | ID=MS.gene013128.t1.exon14;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79562098 | 79562198 | 79562098 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79562928 | 79562979 | 79562928 | ID=MS.gene013128.t1.exon15;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79562928 | 79562979 | 79562928 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79563239 | 79563301 | 79563239 | ID=MS.gene013128.t1.exon16;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79563239 | 79563301 | 79563239 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79564001 | 79564090 | 79564001 | ID=MS.gene013128.t1.exon17;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79564001 | 79564090 | 79564001 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79564167 | 79564239 | 79564167 | ID=MS.gene013128.t1.exon18;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79564167 | 79564239 | 79564167 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79565969 | 79566048 | 79565969 | ID=MS.gene013128.t1.exon19;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79565969 | 79566048 | 79565969 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79566624 | 79566728 | 79566624 | ID=MS.gene013128.t1.exon20;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79566624 | 79566728 | 79566624 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79566802 | 79566900 | 79566802 | ID=MS.gene013128.t1.exon21;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79566802 | 79566900 | 79566802 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79567010 | 79567071 | 79567010 | ID=MS.gene013128.t1.exon22;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79567010 | 79567071 | 79567010 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79567410 | 79567518 | 79567410 | ID=MS.gene013128.t1.exon23;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79567410 | 79567518 | 79567410 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| chr3.1 | exon | 79568363 | 79568476 | 79568363 | ID=MS.gene013128.t1.exon24;Parent=MS.gene013128.t1 |
| chr3.1 | CDS | 79568363 | 79568476 | 79568363 | ID=cds.MS.gene013128.t1;Parent=MS.gene013128.t1 |
| Gene Sequence |
| Protein sequence |
