Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049882.t1 | XP_003629711.2 | 95.1 | 728 | 34 | 1 | 1 | 726 | 1 | 728 | 0.00E+00 | 1379 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049882.t1 | Q84P17 | 69.2 | 730 | 213 | 7 | 4 | 726 | 3 | 727 | 4.5e-297 | 1021.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049882.t1 | G7LHZ3 | 95.1 | 728 | 34 | 1 | 1 | 726 | 1 | 728 | 0.0e+00 | 1379.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045801 | MS.gene049882 | PPI |
| MS.gene83231 | MS.gene049882 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049882.t1 | MTR_8g085680 | 96.291 | 728 | 25 | 2 | 1 | 726 | 1 | 728 | 0.0 | 1439 |
| MS.gene049882.t1 | MTR_8g085680 | 95.965 | 694 | 26 | 2 | 1 | 692 | 1 | 694 | 0.0 | 1368 |
| MS.gene049882.t1 | MTR_8g086050 | 85.597 | 729 | 102 | 1 | 1 | 726 | 1 | 729 | 0.0 | 1263 |
| MS.gene049882.t1 | MTR_8g086050 | 86.196 | 623 | 83 | 1 | 1 | 620 | 1 | 623 | 0.0 | 1082 |
| MS.gene049882.t1 | MTR_8g085680 | 95.993 | 549 | 20 | 2 | 1 | 547 | 1 | 549 | 0.0 | 1081 |
| MS.gene049882.t1 | MTR_8g086050 | 86.125 | 591 | 79 | 1 | 1 | 588 | 1 | 591 | 0.0 | 1020 |
| MS.gene049882.t1 | MTR_2g056120 | 50.206 | 729 | 344 | 10 | 1 | 719 | 1 | 720 | 0.0 | 725 |
| MS.gene049882.t1 | MTR_7g084850 | 24.880 | 623 | 428 | 22 | 122 | 720 | 118 | 724 | 3.55e-30 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049882.t1 | AT1G55320 | 69.452 | 730 | 211 | 7 | 4 | 726 | 3 | 727 | 0.0 | 1043 |
| MS.gene049882.t1 | AT1G55320 | 74.755 | 511 | 126 | 3 | 219 | 726 | 1 | 511 | 0.0 | 792 |
| MS.gene049882.t1 | AT5G23050 | 50.624 | 721 | 346 | 7 | 1 | 718 | 1 | 714 | 0.0 | 702 |
| MS.gene049882.t1 | AT5G23050 | 49.239 | 591 | 292 | 6 | 1 | 590 | 1 | 584 | 0.0 | 552 |
| MS.gene049882.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 105 | 720 | 97 | 719 | 5.47e-26 | 114 |
| MS.gene049882.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 105 | 720 | 47 | 669 | 6.00e-26 | 114 |
| MS.gene049882.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 105 | 720 | 47 | 669 | 6.00e-26 | 114 |
| MS.gene049882.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 105 | 720 | 47 | 669 | 6.00e-26 | 114 |
| MS.gene049882.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 105 | 720 | 47 | 669 | 6.00e-26 | 114 |
| MS.gene049882.t1 | AT5G36880 | 25.131 | 573 | 374 | 23 | 105 | 645 | 47 | 596 | 9.29e-19 | 91.3 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGAAGATTTACTTTA+AGG | 0.083745 | 4.4:+14305463 | MS.gene049882:CDS |
| CAACCTTAATCCTTTATTTA+AGG | 0.093679 | 4.4:+14306548 | MS.gene049882:CDS |
| CTTCTTCTCCTCCTCTTTAT+TGG | 0.129077 | 4.4:+14299362 | MS.gene049882:CDS |
| TGCATCACCCTTGGAGAAAT+TGG | 0.134060 | 4.4:-14302165 | None:intergenic |
| TATTGCTGGCCTACAAATTT+AGG | 0.157820 | 4.4:+14304007 | MS.gene049882:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.4:+14304808 | MS.gene049882:intron |
| ATACTCTCATCTTGTTTGTT+AGG | 0.203184 | 4.4:-14301963 | None:intergenic |
| GCCTCCACAACATTCAATTA+TGG | 0.214028 | 4.4:-14305046 | None:intergenic |
| TTAGTCATCCTTGATGAAAA+TGG | 0.254005 | 4.4:+14305156 | MS.gene049882:CDS |
| TGACCTTAAATAAAGGATTA+AGG | 0.255216 | 4.4:-14306551 | None:intergenic |
| CTACTACAGCCTCAAGCTTT+TGG | 0.257165 | 4.4:+14305102 | MS.gene049882:CDS |
| AGGCGAGTTGCAATTTCTTT+TGG | 0.267236 | 4.4:-14302287 | None:intergenic |
| TTATATTCATGCTTCCTATC+TGG | 0.270357 | 4.4:+14304052 | MS.gene049882:CDS |
| TAGGGCTGATGAATGCATTT+TGG | 0.283163 | 4.4:+14306395 | MS.gene049882:CDS |
| GGGCTTATTCCCTGTATATA+TGG | 0.294420 | 4.4:+14305412 | MS.gene049882:CDS |
| GCTTGGAACTGTTCCCAAAA+TGG | 0.311835 | 4.4:-14304822 | None:intergenic |
| CACGGAGGAACCTGGCTTCC+TGG | 0.313286 | 4.4:+14301894 | MS.gene049882:CDS |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.4:-14306084 | None:intergenic |
| CATGAGAAGATTTACTTTAA+GGG | 0.321098 | 4.4:+14305464 | MS.gene049882:CDS |
| CATGAATCTTGGTGGAATAA+AGG | 0.322680 | 4.4:+14306085 | MS.gene049882:CDS |
| CCTCCACAACATTCAATTAT+GGG | 0.325262 | 4.4:-14305045 | None:intergenic |
| TGAGTCCAAGGAATTGCTTT+TGG | 0.327617 | 4.4:-14303920 | None:intergenic |
| GAGAGTTTGACCTTAAATAA+AGG | 0.331168 | 4.4:-14306558 | None:intergenic |
| CAACACTTCCTTCAATTCAT+TGG | 0.331370 | 4.4:-14299206 | None:intergenic |
| AAAAGAGGAAAACTAGTAAT+AGG | 0.341960 | 4.4:-14301623 | None:intergenic |
| TCTCCGCTAGGTCATGGTTT+TGG | 0.352620 | 4.4:+14304100 | MS.gene049882:CDS |
| TACTCTCATCTTGTTTGTTA+GGG | 0.358590 | 4.4:-14301962 | None:intergenic |
| GAATCGATTGATTGATAGAT+TGG | 0.364438 | 4.4:-14303782 | None:intergenic |
| AGGATTAAGGTTGGTTTGAA+TGG | 0.369128 | 4.4:-14306538 | None:intergenic |
| ACAAATATAACCAGTTGTTC+TGG | 0.372196 | 4.4:-14306456 | None:intergenic |
| CAAATGTTGATGATGACCTT+TGG | 0.373899 | 4.4:+14304998 | MS.gene049882:CDS |
| AAATTGAGCGCGTCTGTGAT+AGG | 0.374839 | 4.4:+14306376 | MS.gene049882:CDS |
| GATGTATCTAAAATGCAATT+TGG | 0.379893 | 4.4:-14301855 | None:intergenic |
| TTCCTTCAATTCATTGGCTT+CGG | 0.393896 | 4.4:-14299200 | None:intergenic |
| CTCATCTTGTTTGTTAGGGT+GGG | 0.396642 | 4.4:-14301958 | None:intergenic |
| TACACAATGTATGGAGGGCT+TGG | 0.407496 | 4.4:+14304865 | MS.gene049882:CDS |
| TGGAGGGTGTGAGGGTATGA+TGG | 0.408960 | 4.4:-14299301 | None:intergenic |
| TCAGTTGCTCCCATATATAC+AGG | 0.409158 | 4.4:-14305422 | None:intergenic |
| AACCCGGAGACGTCTATTGC+TGG | 0.420668 | 4.4:+14303993 | MS.gene049882:CDS |
| TCCATCTGCAGCACTTCGTA+TGG | 0.431839 | 4.4:-14303951 | None:intergenic |
| GCAGGCAATCCGCACAAACC+TGG | 0.433498 | 4.4:+14301544 | MS.gene049882:CDS |
| TAGACTCCCCATGATATAAC+AGG | 0.435997 | 4.4:-14305082 | None:intergenic |
| CTGGCCTACAAATTTAGGTT+GGG | 0.439023 | 4.4:+14304012 | MS.gene049882:CDS |
| TCTCATCTTGTTTGTTAGGG+TGG | 0.442425 | 4.4:-14301959 | None:intergenic |
| TAAGAGAACATGACTTATCA+TGG | 0.450422 | 4.4:+14303600 | MS.gene049882:CDS |
| TTGGAAGAGTACACAATGTA+TGG | 0.451022 | 4.4:+14304856 | MS.gene049882:CDS |
| GTATTGCACTGCAGGTGTAC+TGG | 0.452092 | 4.4:+14301790 | MS.gene049882:intron |
| CCAACACAAGGTACATCATC+TGG | 0.453253 | 4.4:-14305383 | None:intergenic |
| ACTACAATTGTTCAGGATGC+AGG | 0.453438 | 4.4:+14304794 | MS.gene049882:intron |
| CACAAACCTGGGTCGTCTCA+TGG | 0.460302 | 4.4:+14301556 | MS.gene049882:CDS |
| GCGCTCAATTTCTACAGAAC+TGG | 0.462711 | 4.4:-14306364 | None:intergenic |
| TGCCGAAGCCAATGAATTGA+AGG | 0.463190 | 4.4:+14299198 | MS.gene049882:CDS |
| TTCAATTCATTGGCTTCGGC+AGG | 0.464114 | 4.4:-14299196 | None:intergenic |
| AAATGGAGGTCCAGAACAAC+TGG | 0.465792 | 4.4:+14306446 | MS.gene049882:CDS |
| CCACATTACTTCCAGGTTGG+TGG | 0.467372 | 4.4:+14302127 | MS.gene049882:intron |
| GGTTTCTAAATTTAGAGAGC+AGG | 0.469719 | 4.4:+14301526 | MS.gene049882:intron |
| GCCATCTTGTTGTGCAAGGA+AGG | 0.472268 | 4.4:+14306051 | MS.gene049882:CDS |
| ATGAGAGTATAGCTATCATC+TGG | 0.476182 | 4.4:+14301976 | MS.gene049882:CDS |
| TTTAGGAGCATCCTTGTACA+AGG | 0.477406 | 4.4:+14301598 | MS.gene049882:CDS |
| ATCACCCAACCTAAATTTGT+AGG | 0.482826 | 4.4:-14304016 | None:intergenic |
| TGTTTGTTAGGGTGGGAGCT+AGG | 0.484688 | 4.4:-14301951 | None:intergenic |
| GGGATCCAAAAGCAATTCCT+TGG | 0.486702 | 4.4:+14303915 | MS.gene049882:CDS |
| ACAAATTTAGGTTGGGTGAT+GGG | 0.487973 | 4.4:+14304019 | MS.gene049882:CDS |
| GTACCTTGTGTTGGTGAAGC+GGG | 0.488589 | 4.4:+14305392 | MS.gene049882:CDS |
| GGCTTATTCCCTGTATATAT+GGG | 0.489550 | 4.4:+14305413 | MS.gene049882:CDS |
| GCTTGCATCCTGTTATATCA+TGG | 0.489645 | 4.4:+14305074 | MS.gene049882:CDS |
| GTCAGTGTTTCTGCTGCAAA+TGG | 0.491410 | 4.4:+14306429 | MS.gene049882:CDS |
| AATTGCAATTGCATCACCCT+TGG | 0.492471 | 4.4:-14302174 | None:intergenic |
| TACGAAGTGCTGCAGATGGA+TGG | 0.492810 | 4.4:+14303954 | MS.gene049882:CDS |
| GCTGGCCTACAAATTTAGGT+TGG | 0.493594 | 4.4:+14304011 | MS.gene049882:CDS |
| TGTGAGGGTATGATGGTTTG+AGG | 0.493666 | 4.4:-14299294 | None:intergenic |
| CATCAAAACACGGAGGAACC+TGG | 0.494365 | 4.4:+14301886 | MS.gene049882:CDS |
| GATATAATCAAAAGAACTGT+AGG | 0.494735 | 4.4:+14306026 | MS.gene049882:CDS |
| CTTAAATAAAGGATTAAGGT+TGG | 0.496808 | 4.4:-14306547 | None:intergenic |
| GAGCAAGAGTTGCTCCAGAT+AGG | 0.507851 | 4.4:-14304066 | None:intergenic |
| GCAGAAAATTCCCTTTGTAC+AGG | 0.508196 | 4.4:+14302474 | MS.gene049882:CDS |
| AGAAGCTGGTGGAGGGTGTG+AGG | 0.510536 | 4.4:-14299310 | None:intergenic |
| AGAGTGGTGATGATCATAGA+TGG | 0.510649 | 4.4:-14299341 | None:intergenic |
| GTACTGGTCTCTTGTTCTAA+AGG | 0.511821 | 4.4:+14301806 | MS.gene049882:CDS |
| AGGCCAGCAATAGACGTCTC+CGG | 0.518061 | 4.4:-14303996 | None:intergenic |
| AAGTACAGAACCAGGAAGCC+AGG | 0.518355 | 4.4:-14301904 | None:intergenic |
| ATCAACATTTGAAGTTTCCC+CGG | 0.519896 | 4.4:-14304986 | None:intergenic |
| TATAGTAGAGAAGCTGGTGG+AGG | 0.523030 | 4.4:-14299318 | None:intergenic |
| TACAAATTTAGGTTGGGTGA+TGG | 0.523734 | 4.4:+14304018 | MS.gene049882:CDS |
| GCTATCATCTGGAGGGATGA+AGG | 0.523832 | 4.4:+14301987 | MS.gene049882:CDS |
| CAGGCAATCCGCACAAACCT+GGG | 0.524737 | 4.4:+14301545 | MS.gene049882:CDS |
| CTTGCATCCTGTTATATCAT+GGG | 0.525021 | 4.4:+14305075 | MS.gene049882:CDS |
| GAAGCTGGTGGAGGGTGTGA+GGG | 0.525825 | 4.4:-14299309 | None:intergenic |
| GGCCAGCAATAGACGTCTCC+GGG | 0.527044 | 4.4:-14303995 | None:intergenic |
| AATGTATGGAGGGCTTGGAT+TGG | 0.527992 | 4.4:+14304870 | MS.gene049882:CDS |
| AATTGAGCGCGTCTGTGATA+GGG | 0.528177 | 4.4:+14306377 | MS.gene049882:CDS |
| CTCCGTGTTTCCGATGCAAA+GGG | 0.530604 | 4.4:+14302308 | MS.gene049882:CDS |
| CACTCTCCTCAGCTGACACA+TGG | 0.531737 | 4.4:+14299248 | MS.gene049882:CDS |
| AGATGGTATAGTAGAGAAGC+TGG | 0.532142 | 4.4:-14299324 | None:intergenic |
| ATATATAATCACAGCATTGA+CGG | 0.539607 | 4.4:-14302210 | None:intergenic |
| GCTGATGATACCATGAATCT+TGG | 0.539803 | 4.4:+14306074 | MS.gene049882:CDS |
| CCTCCGTGTTTCCGATGCAA+AGG | 0.541069 | 4.4:+14302307 | MS.gene049882:CDS |
| AAAGAGGAGGAGAAGAAGAG+TGG | 0.541569 | 4.4:-14299357 | None:intergenic |
| CATGGATCTCCGCTAGGTCA+TGG | 0.541719 | 4.4:+14304094 | MS.gene049882:CDS |
| GAACATGACTTATCATGGAA+TGG | 0.541816 | 4.4:+14303605 | MS.gene049882:CDS |
| CCGCTTCCAACAAAATACTA+AGG | 0.542322 | 4.4:+14306775 | MS.gene049882:CDS |
| CCCTTCCTTGCACAACAAGA+TGG | 0.543979 | 4.4:-14306052 | None:intergenic |
| TAGCAGGTTCTTCGAAGACA+TGG | 0.543982 | 4.4:+14306002 | MS.gene049882:intron |
| AAGCATGAATATAAAAGAGT+TGG | 0.545939 | 4.4:-14304043 | None:intergenic |
| AACACATCCTGCTAAAACAA+TGG | 0.550057 | 4.4:-14302237 | None:intergenic |
| TATACCTTTCCTTTGTAAAG+CGG | 0.551050 | 4.4:-14305491 | None:intergenic |
| ACGAAGTGCTGCAGATGGAT+GGG | 0.552217 | 4.4:+14303955 | MS.gene049882:CDS |
| CCTTAAAGTAAATCTTCTCA+TGG | 0.553450 | 4.4:-14305463 | None:intergenic |
| AAACCCATAATTGAATGTTG+TGG | 0.554187 | 4.4:+14305042 | MS.gene049882:CDS |
| ATGATGGTTTGAGGACTCTA+CGG | 0.555176 | 4.4:-14299285 | None:intergenic |
| TACCCTTTGCATCGGAAACA+CGG | 0.557533 | 4.4:-14302310 | None:intergenic |
| AAGGGAATGCCGCTTTACAA+AGG | 0.566824 | 4.4:+14305482 | MS.gene049882:CDS |
| GTATCTAAAATGCAATTTGG+AGG | 0.568095 | 4.4:-14301852 | None:intergenic |
| GGTCGTCTCATGGAAAATCA+TGG | 0.570483 | 4.4:+14301566 | MS.gene049882:CDS |
| CCCATACGAAGTGCTGCAGA+TGG | 0.572789 | 4.4:+14303950 | MS.gene049882:CDS |
| GATGATACCATGAATCTTGG+TGG | 0.578979 | 4.4:+14306077 | MS.gene049882:CDS |
| CTGTACCATGGATCTCCGCT+AGG | 0.582836 | 4.4:+14304088 | MS.gene049882:CDS |
| CGTGAAAATACCCTTTGCAT+CGG | 0.583654 | 4.4:-14302318 | None:intergenic |
| CCAACATCATTGTCTATCAC+AGG | 0.584997 | 4.4:-14303569 | None:intergenic |
| ATAATCAAAAGAACTGTAGG+AGG | 0.585477 | 4.4:+14306029 | MS.gene049882:CDS |
| TGGTATAGTAGAGAAGCTGG+TGG | 0.589291 | 4.4:-14299321 | None:intergenic |
| AGAGAAGGGAACCAATAAAG+AGG | 0.590321 | 4.4:-14299373 | None:intergenic |
| GCAACTCTTGCTCTGTACCA+TGG | 0.591404 | 4.4:+14304076 | MS.gene049882:CDS |
| CCATCTGCAGCACTTCGTAT+GGG | 0.591719 | 4.4:-14303950 | None:intergenic |
| CCATCTTGTTGTGCAAGGAA+GGG | 0.596864 | 4.4:+14306052 | MS.gene049882:CDS |
| ATGGGCGAAAGTTGAGTCCA+AGG | 0.598596 | 4.4:-14303932 | None:intergenic |
| CCCATAATTGAATGTTGTGG+AGG | 0.600562 | 4.4:+14305045 | MS.gene049882:CDS |
| TTTCTTCAGAGTTTCCGCAT+CGG | 0.601479 | 4.4:-14306502 | None:intergenic |
| ATAGTAGAGAAGCTGGTGGA+GGG | 0.601851 | 4.4:-14299317 | None:intergenic |
| TTCTTCCAGTCGAGTCGTTG+AGG | 0.601975 | 4.4:+14303520 | MS.gene049882:intron |
| CTAAATGCTCCAAAAGCTTG+AGG | 0.602109 | 4.4:-14305111 | None:intergenic |
| CATGACCTAGCGGAGATCCA+TGG | 0.602172 | 4.4:-14304093 | None:intergenic |
| CAGTTGCTCCCATATATACA+GGG | 0.602896 | 4.4:-14305421 | None:intergenic |
| TTAGAGTGACTTACAGAGAA+GGG | 0.603250 | 4.4:-14299387 | None:intergenic |
| GAAGCGGTTCTAGGAAACAT+AGG | 0.603896 | 4.4:-14306759 | None:intergenic |
| GCAATTTGGAGGTTCGACAA+AGG | 0.606887 | 4.4:-14301841 | None:intergenic |
| AGTAATAGGATCCTTGTACA+AGG | 0.606933 | 4.4:-14301609 | None:intergenic |
| AGTGTTTCTGCTGCAAATGG+AGG | 0.607240 | 4.4:+14306432 | MS.gene049882:CDS |
| GGAGGCCATCTTGTTGTGCA+AGG | 0.609728 | 4.4:+14306047 | MS.gene049882:CDS |
| GCTTTAATCGATATTCAACC+CGG | 0.613037 | 4.4:+14303977 | MS.gene049882:CDS |
| TGAGACGACCCAGGTTTGTG+CGG | 0.620787 | 4.4:-14301553 | None:intergenic |
| TGTACCTTGTGTTGGTGAAG+CGG | 0.622459 | 4.4:+14305391 | MS.gene049882:CDS |
| ATTAGAGTGACTTACAGAGA+AGG | 0.622491 | 4.4:-14299388 | None:intergenic |
| TAGGACTTCATATTAAGAGG+TGG | 0.624381 | 4.4:+14302452 | MS.gene049882:intron |
| AGAGTATAGCTATCATCTGG+AGG | 0.624416 | 4.4:+14301979 | MS.gene049882:CDS |
| ATAGATGCCAATTTCTCCAA+GGG | 0.625023 | 4.4:+14302158 | MS.gene049882:CDS |
| AATAGATGCCAATTTCTCCA+AGG | 0.627081 | 4.4:+14302157 | MS.gene049882:CDS |
| CCTGTGATAGACAATGATGT+TGG | 0.628362 | 4.4:+14303569 | MS.gene049882:CDS |
| GAAGAGTACACAATGTATGG+AGG | 0.628430 | 4.4:+14304859 | MS.gene049882:CDS |
| GAAGGGAACCAATAAAGAGG+AGG | 0.628826 | 4.4:-14299370 | None:intergenic |
| GTGGCGCCATGTGTCAGCTG+AGG | 0.628901 | 4.4:-14299254 | None:intergenic |
| AAGAGTACACAATGTATGGA+GGG | 0.632020 | 4.4:+14304860 | MS.gene049882:CDS |
| GAGTATAGCTATCATCTGGA+GGG | 0.636952 | 4.4:+14301980 | MS.gene049882:CDS |
| TGAGGACTCTACGGCTGACG+AGG | 0.637199 | 4.4:-14299276 | None:intergenic |
| GCAATATTAAGTACAGAACC+AGG | 0.641645 | 4.4:-14301912 | None:intergenic |
| GCTGAGGAGAGTGAAGAGAG+TGG | 0.642669 | 4.4:-14299238 | None:intergenic |
| CCAGATGATGTACCTTGTGT+TGG | 0.644504 | 4.4:+14305383 | MS.gene049882:CDS |
| TTGCATCCTGTTATATCATG+GGG | 0.646094 | 4.4:+14305076 | MS.gene049882:CDS |
| GGACTCTACGGCTGACGAGG+TGG | 0.659775 | 4.4:-14299273 | None:intergenic |
| AATGCCGCTTTACAAAGGAA+AGG | 0.670295 | 4.4:+14305487 | MS.gene049882:CDS |
| TTTCCAAAACCATGACCTAG+CGG | 0.677256 | 4.4:-14304103 | None:intergenic |
| TCTTCTGACCCATCAAAACA+CGG | 0.682602 | 4.4:+14301876 | MS.gene049882:CDS |
| GACAGGATACGATTCCGATG+CGG | 0.708590 | 4.4:+14306488 | MS.gene049882:CDS |
| AAGCCCGCTTCACCAACACA+AGG | 0.728951 | 4.4:-14305395 | None:intergenic |
| CCTTTGCATCGGAAACACGG+AGG | 0.773889 | 4.4:-14302307 | None:intergenic |
| TCTGACCCATCAAAACACGG+AGG | 0.817018 | 4.4:+14301879 | MS.gene049882:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14299136 | 14306851 | 14299136 | ID=MS.gene049882 |
| chr4.4 | mRNA | 14299136 | 14306851 | 14299136 | ID=MS.gene049882.t1;Parent=MS.gene049882 |
| chr4.4 | exon | 14299136 | 14299395 | 14299136 | ID=MS.gene049882.t1.exon1;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14299136 | 14299395 | 14299136 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14301541 | 14301673 | 14301541 | ID=MS.gene049882.t1.exon2;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14301541 | 14301673 | 14301541 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14301804 | 14302066 | 14301804 | ID=MS.gene049882.t1.exon3;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14301804 | 14302066 | 14301804 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14302142 | 14302343 | 14302142 | ID=MS.gene049882.t1.exon4;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14302142 | 14302343 | 14302142 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14302455 | 14302495 | 14302455 | ID=MS.gene049882.t1.exon5;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14302455 | 14302495 | 14302455 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14303529 | 14303657 | 14303529 | ID=MS.gene049882.t1.exon6;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14303529 | 14303657 | 14303529 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14303766 | 14303839 | 14303766 | ID=MS.gene049882.t1.exon7;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14303766 | 14303839 | 14303766 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14303915 | 14304135 | 14303915 | ID=MS.gene049882.t1.exon8;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14303915 | 14304135 | 14303915 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14304809 | 14304903 | 14304809 | ID=MS.gene049882.t1.exon9;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14304809 | 14304903 | 14304809 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14304972 | 14305188 | 14304972 | ID=MS.gene049882.t1.exon10;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14304972 | 14305188 | 14304972 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14305383 | 14305508 | 14305383 | ID=MS.gene049882.t1.exon11;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14305383 | 14305508 | 14305383 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14306008 | 14306106 | 14306008 | ID=MS.gene049882.t1.exon12;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14306008 | 14306106 | 14306008 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14306363 | 14306569 | 14306363 | ID=MS.gene049882.t1.exon13;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14306363 | 14306569 | 14306363 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| chr4.4 | exon | 14306738 | 14306851 | 14306738 | ID=MS.gene049882.t1.exon14;Parent=MS.gene049882.t1 |
| chr4.4 | CDS | 14306738 | 14306851 | 14306738 | ID=cds.MS.gene049882.t1;Parent=MS.gene049882.t1 |
| Gene Sequence |
| Protein sequence |
