Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049884.t1 | XP_003629713.1 | 94.2 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 2.40E-50 | 208 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049884.t1 | G7LIL4 | 94.2 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 1.7e-50 | 208.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049884 | MS.gene07100 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene049884 | MS.gene071960 | 0.818901 | 1.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049884.t1 | MTR_8g085700 | 94.167 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 3.44e-73 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049884.t1 | AT1G30845 | 68.644 | 118 | 37 | 0 | 1 | 118 | 1 | 118 | 2.57e-41 | 133 |
Find 25 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAATTGGTAGCGAAAT+TGG | 0.266316 | 4.4:-14281832 | None:intergenic |
| GCTACCAATTTCATCTCTTC+TGG | 0.281584 | 4.4:+14281840 | MS.gene049884:CDS |
| GGTGCCTTACTCATAATAAT+TGG | 0.319313 | 4.4:+14284148 | MS.gene049884:CDS |
| TTCATCTCTTCTGGTTTAGC+TGG | 0.343821 | 4.4:+14281849 | MS.gene049884:CDS |
| TCACGAATCACTCTCTTTCC+AGG | 0.347865 | 4.4:+14281884 | MS.gene049884:CDS |
| TACACCAATTATTATGAGTA+AGG | 0.393432 | 4.4:-14284152 | None:intergenic |
| TAAACCAGAAGAGATGAAAT+TGG | 0.399852 | 4.4:-14281844 | None:intergenic |
| CAACTCAAGTATTGAGAAGA+AGG | 0.407633 | 4.4:+14284186 | MS.gene049884:CDS |
| TTTCACATCTTCATTAAGTA+CGG | 0.421835 | 4.4:+14281726 | MS.gene049884:CDS |
| ATGGAGGGAGGAGGATCAAA+TGG | 0.489470 | 4.4:+14281633 | MS.gene049884:CDS |
| TATGCGTGGGCAGTATCTGC+TGG | 0.492657 | 4.4:+14281663 | MS.gene049884:CDS |
| GGAGGAGGATCAAATGGAAA+GGG | 0.494877 | 4.4:+14281639 | MS.gene049884:CDS |
| TTCACATCTTCATTAAGTAC+GGG | 0.499879 | 4.4:+14281727 | MS.gene049884:CDS |
| CTTCATTAAGTACGGGTTCG+TGG | 0.500736 | 4.4:+14281734 | MS.gene049884:CDS |
| AAAGCTGAACTTAGCGAAGA+TGG | 0.512085 | 4.4:-14281706 | None:intergenic |
| AGCGAAGATGGCTGCAAGAG+CGG | 0.553519 | 4.4:-14281694 | None:intergenic |
| GGGAGGAGGATCAAATGGAA+AGG | 0.566048 | 4.4:+14281638 | MS.gene049884:CDS |
| CAAATGGAAAGGGGTATGCG+TGG | 0.570150 | 4.4:+14281649 | MS.gene049884:CDS |
| GATCGAATCATGGAGGGAGG+AGG | 0.576752 | 4.4:+14281624 | None:intergenic |
| AAATGGAAAGGGGTATGCGT+GGG | 0.616393 | 4.4:+14281650 | MS.gene049884:CDS |
| GAGGAGGATCAAATGGAAAG+GGG | 0.621136 | 4.4:+14281640 | MS.gene049884:CDS |
| TGTGATCGAATCATGGAGGG+AGG | 0.668661 | 4.4:+14281621 | None:intergenic |
| AATTGTGATCGAATCATGGA+GGG | 0.700863 | 4.4:+14281618 | None:intergenic |
| GTTGACATAACAACACCACA+TGG | 0.713568 | 4.4:-14281772 | None:intergenic |
| TATTCTTCAATGTAACCATG+TGG | 0.745608 | 4.4:+14281757 | MS.gene049884:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTCTTAATTTTCTTT+GGG | - | chr4.4:14282151-14282170 | None:intergenic | 10.0% |
| !!! | TTGCTATTTTTTTTTTTTTT+TGG | + | chr4.4:14282106-14282125 | MS.gene049884:intron | 10.0% |
| !!! | TTTAATTTCTTAATTTTCTT+TGG | - | chr4.4:14282152-14282171 | None:intergenic | 10.0% |
| !! | AAATAAACATACAGAATTAA+GGG | - | chr4.4:14282019-14282038 | None:intergenic | 15.0% |
| !! | CAATTATTTAGTTACAAATT+GGG | - | chr4.4:14281956-14281975 | None:intergenic | 15.0% |
| !! | TAAATAAACATACAGAATTA+AGG | - | chr4.4:14282020-14282039 | None:intergenic | 15.0% |
| !! | TCAATTATTTAGTTACAAAT+TGG | - | chr4.4:14281957-14281976 | None:intergenic | 15.0% |
| !! | AAATTATCATCATATTGATG+GGG | - | chr4.4:14283182-14283201 | None:intergenic | 20.0% |
| !! | CTAAGGGTAAAATAAAATTA+GGG | + | chr4.4:14283569-14283588 | MS.gene049884:intron | 20.0% |
| !! | GAAATTATCATCATATTGAT+GGG | - | chr4.4:14283183-14283202 | None:intergenic | 20.0% |
| !! | TAAAAATCAGAAATCACTAT+TGG | + | chr4.4:14283540-14283559 | MS.gene049884:intron | 20.0% |
| !! | TCTAAGGGTAAAATAAAATT+AGG | + | chr4.4:14283568-14283587 | MS.gene049884:intron | 20.0% |
| !! | TTGAACAAACAAAATTGAAA+TGG | + | chr4.4:14281973-14281992 | MS.gene049884:intron | 20.0% |
| !!! | AAATCAAATTCGTTTGAAAT+TGG | + | chr4.4:14283677-14283696 | MS.gene049884:intron | 20.0% |
| !!! | TTACTCATTTTCTTAAGAAA+TGG | - | chr4.4:14283864-14283883 | None:intergenic | 20.0% |
| ! | AAATAGCAAATCATGATACT+TGG | - | chr4.4:14282095-14282114 | None:intergenic | 25.0% |
| ! | AGCAAATCATGATAAATTTC+TGG | - | chr4.4:14283471-14283490 | None:intergenic | 25.0% |
| ! | AGTTCAAAAATGATACGAAT+AGG | + | chr4.4:14282758-14282777 | MS.gene049884:intron | 25.0% |
| ! | CATGTGTTTATCAAAATAAG+TGG | + | chr4.4:14283967-14283986 | MS.gene049884:intron | 25.0% |
| ! | GGAAATTATCATCATATTGA+TGG | - | chr4.4:14283184-14283203 | None:intergenic | 25.0% |
| ! | TACACCAATTATTATGAGTA+AGG | - | chr4.4:14284155-14284174 | None:intergenic | 25.0% |
| ! | TTTCACATCTTCATTAAGTA+CGG | + | chr4.4:14281726-14281745 | MS.gene049884:CDS | 25.0% |
| !! | AATAAACTGAAAGCATAAAG+AGG | - | chr4.4:14284081-14284100 | None:intergenic | 25.0% |
| !! | ATTTCTTTTCTTTGAATTGC+AGG | - | chr4.4:14282928-14282947 | None:intergenic | 25.0% |
| !! | TATGCATTTTTAACAGCAAA+CGG | - | chr4.4:14283705-14283724 | None:intergenic | 25.0% |
| !! | TTGCTATTAGTAGTACATAT+GGG | + | chr4.4:14283486-14283505 | MS.gene049884:intron | 25.0% |
| !! | TTTCTTTTCTTTGAATTGCA+GGG | - | chr4.4:14282927-14282946 | None:intergenic | 25.0% |
| !! | TTTTGATAAACACATGAGAA+GGG | - | chr4.4:14283963-14283982 | None:intergenic | 25.0% |
| !!! | AATCATGATAAATTTCTGGT+TGG | - | chr4.4:14283467-14283486 | None:intergenic | 25.0% |
| !!! | AATTTTGACACTATCTACAT+CGG | - | chr4.4:14282686-14282705 | None:intergenic | 25.0% |
| !!! | ATTTTGATAAACACATGAGA+AGG | - | chr4.4:14283964-14283983 | None:intergenic | 25.0% |
| !!! | CAAACGAATTTGATTTTTCA+GGG | - | chr4.4:14283673-14283692 | None:intergenic | 25.0% |
| !!! | TCAAACGAATTTGATTTTTC+AGG | - | chr4.4:14283674-14283693 | None:intergenic | 25.0% |
| !!! | TTTGCTATTAGTAGTACATA+TGG | + | chr4.4:14283485-14283504 | MS.gene049884:intron | 25.0% |
| !!! | TTTTTTTGGTACAGAAAAGA+GGG | + | chr4.4:14282120-14282139 | MS.gene049884:intron | 25.0% |
| !!! | TTTTTTTTGGTACAGAAAAG+AGG | + | chr4.4:14282119-14282138 | MS.gene049884:intron | 25.0% |
| AACAAAGTCTAAAGAATCTG+TGG | + | chr4.4:14284044-14284063 | MS.gene049884:intron | 30.0% | |
| AATCAGAAATCACTATTGGT+TGG | + | chr4.4:14283544-14283563 | MS.gene049884:intron | 30.0% | |
| ACAGGAAATTGCAAGATTAA+TGG | - | chr4.4:14282404-14282423 | None:intergenic | 30.0% | |
| AGCACAACAAAGCTATAAAT+TGG | - | chr4.4:14283521-14283540 | None:intergenic | 30.0% | |
| AGGAAATTGCAAGATTAATG+GGG | - | chr4.4:14282402-14282421 | None:intergenic | 30.0% | |
| AGTTTGATAAACACATGAGA+AGG | - | chr4.4:14283917-14283936 | None:intergenic | 30.0% | |
| ATGATACGAATAGGATCAAT+AGG | + | chr4.4:14282767-14282786 | MS.gene049884:intron | 30.0% | |
| CAAAGAAAATAGTTACTACC+TGG | - | chr4.4:14281905-14281924 | None:intergenic | 30.0% | |
| CAGGAAATTGCAAGATTAAT+GGG | - | chr4.4:14282403-14282422 | None:intergenic | 30.0% | |
| GAAACACACGTTACATATAA+TGG | - | chr4.4:14282044-14282063 | None:intergenic | 30.0% | |
| GAAATTAAACGAACATTCCT+AGG | + | chr4.4:14282163-14282182 | MS.gene049884:intron | 30.0% | |
| GTTTGATAAACACATGAGAA+GGG | - | chr4.4:14283916-14283935 | None:intergenic | 30.0% | |
| TAAACCAGAAGAGATGAAAT+TGG | - | chr4.4:14281847-14281866 | None:intergenic | 30.0% | |
| TAGTAGTACATATGGGATAA+AGG | + | chr4.4:14283493-14283512 | MS.gene049884:intron | 30.0% | |
| TATTCTTCAATGTAACCATG+TGG | + | chr4.4:14281757-14281776 | MS.gene049884:CDS | 30.0% | |
| TGCTGTTAAAAATGCATATG+CGG | + | chr4.4:14283707-14283726 | MS.gene049884:intron | 30.0% | |
| TGTTTCCAACTGCTTAATTT+GGG | + | chr4.4:14282058-14282077 | MS.gene049884:intron | 30.0% | |
| TTCACATCTTCATTAAGTAC+GGG | + | chr4.4:14281727-14281746 | MS.gene049884:CDS | 30.0% | |
| ! | ATGCATTTTTAACAGCAAAC+GGG | - | chr4.4:14283704-14283723 | None:intergenic | 30.0% |
| ! | TCAAAATTTTGTGACACTTG+TGG | + | chr4.4:14282698-14282717 | MS.gene049884:intron | 30.0% |
| ! | TGCAAAGAAATGTTTTACAG+TGG | + | chr4.4:14284119-14284138 | MS.gene049884:intron | 30.0% |
| !! | AAATTTCTGGTTGGACAAAT+GGG | - | chr4.4:14283458-14283477 | None:intergenic | 30.0% |
| !! | ATTTTGTTTGAGGACATTTC+CGG | - | chr4.4:14282199-14282218 | None:intergenic | 30.0% |
| !! | TAAATTTCTGGTTGGACAAA+TGG | - | chr4.4:14283459-14283478 | None:intergenic | 30.0% |
| AAAAATGCATATGCGGCAAA+CGG | + | chr4.4:14283714-14283733 | MS.gene049884:intron | 35.0% | |
| AAACACAATCACGCAAAACA+TGG | + | chr4.4:14282996-14283015 | MS.gene049884:intron | 35.0% | |
| AAAGATGTTCTGATGGTTGA+TGG | - | chr4.4:14283370-14283389 | None:intergenic | 35.0% | |
| AAAGGTTATGTTCGGAAGAT+TGG | - | chr4.4:14282548-14282567 | None:intergenic | 35.0% | |
| AAGAAGATATGGGATTGGAA+AGG | - | chr4.4:14283154-14283173 | None:intergenic | 35.0% | |
| AAGATGTTCTGATGGTTGAT+GGG | - | chr4.4:14283369-14283388 | None:intergenic | 35.0% | |
| AAGGGTCATAATCATGACAT+TGG | - | chr4.4:14282001-14282020 | None:intergenic | 35.0% | |
| AAGTCTAAAGAATCTGTGGT+TGG | + | chr4.4:14284048-14284067 | MS.gene049884:intron | 35.0% | |
| ACATGAGAAGGGAAATACAA+TGG | - | chr4.4:14283905-14283924 | None:intergenic | 35.0% | |
| AGTGGCTAAAAGGTTATGTT+CGG | - | chr4.4:14282556-14282575 | None:intergenic | 35.0% | |
| ATAAATCATACCTTGCGTGA+AGG | - | chr4.4:14282316-14282335 | None:intergenic | 35.0% | |
| ATAGAATCCAAACCTTCATG+TGG | - | chr4.4:14283126-14283145 | None:intergenic | 35.0% | |
| ATCATCATATTGATGGGGAT+TGG | - | chr4.4:14283177-14283196 | None:intergenic | 35.0% | |
| ATGAAGGTTTGGATTCTATG+AGG | + | chr4.4:14283127-14283146 | MS.gene049884:intron | 35.0% | |
| ATTACCACAAATAGGGCAAA+TGG | + | chr4.4:14283036-14283055 | MS.gene049884:intron | 35.0% | |
| ATTGGAAGAAGATATGGGAT+TGG | - | chr4.4:14283159-14283178 | None:intergenic | 35.0% | |
| ATTTGCCCTATTTGTGGTAA+TGG | - | chr4.4:14283037-14283056 | None:intergenic | 35.0% | |
| CAAGAGGAAGATGAGAATTT+AGG | + | chr4.4:14283326-14283345 | MS.gene049884:intron | 35.0% | |
| GAAAAAAGAGATGAACCACA+AGG | + | chr4.4:14283430-14283449 | MS.gene049884:intron | 35.0% | |
| GAGGAACAAATCTATCTTTG+AGG | - | chr4.4:14282807-14282826 | None:intergenic | 35.0% | |
| GGTGCCTTACTCATAATAAT+TGG | + | chr4.4:14284148-14284167 | MS.gene049884:CDS | 35.0% | |
| GTGTTTCCAACTGCTTAATT+TGG | + | chr4.4:14282057-14282076 | MS.gene049884:intron | 35.0% | |
| TCGAATTCGACGAATCAAAA+CGG | + | chr4.4:14282370-14282389 | MS.gene049884:intron | 35.0% | |
| TTACCACAAATAGGGCAAAT+GGG | + | chr4.4:14283037-14283056 | MS.gene049884:intron | 35.0% | |
| ! | AACGCCTTTTAACAAACTAC+CGG | - | chr4.4:14283090-14283109 | None:intergenic | 35.0% |
| ! | AATTTTGTGACACTTGTGGT+AGG | + | chr4.4:14282702-14282721 | MS.gene049884:intron | 35.0% |
| ! | CTATCTTTCTAGTGACATGT+TGG | - | chr4.4:14282844-14282863 | None:intergenic | 35.0% |
| ! | GAACAAATCTATCTTTGAGG+AGG | - | chr4.4:14282804-14282823 | None:intergenic | 35.0% |
| !! | AATGTTTTACAGTGGTTTGC+AGG | + | chr4.4:14284127-14284146 | MS.gene049884:intron | 35.0% |
| !! | ATCACTATTGGTTGGTTCTA+AGG | + | chr4.4:14283552-14283571 | MS.gene049884:intron | 35.0% |
| !! | CAACTCAAGTATTGAGAAGA+AGG | + | chr4.4:14284186-14284205 | MS.gene049884:CDS | 35.0% |
| !! | GATGAAATTGGTAGCGAAAT+TGG | - | chr4.4:14281835-14281854 | None:intergenic | 35.0% |
| !! | TCACTATTGGTTGGTTCTAA+GGG | + | chr4.4:14283553-14283572 | MS.gene049884:intron | 35.0% |
| !! | TTTTGTTTGAGGACATTTCC+GGG | - | chr4.4:14282198-14282217 | None:intergenic | 35.0% |
| !!! | TTTTGTGCCCATTGTTTTAG+AGG | - | chr4.4:14282245-14282264 | None:intergenic | 35.0% |
| AAAGCTGAACTTAGCGAAGA+TGG | - | chr4.4:14281709-14281728 | None:intergenic | 40.0% | |
| AGATCTCATTGAACTTCCTG+GGG | - | chr4.4:14282351-14282370 | None:intergenic | 40.0% | |
| ATGCTCTTTATGCTGAGATG+TGG | - | chr4.4:14282517-14282536 | None:intergenic | 40.0% | |
| ATGGGGATTGGAAGAAGATA+TGG | - | chr4.4:14283165-14283184 | None:intergenic | 40.0% | |
| ATGTGATCTGTGCTTCTCAT+GGG | + | chr4.4:14282880-14282899 | MS.gene049884:intron | 40.0% | |
| CAGTGTGAAAGATGTTCTGA+TGG | - | chr4.4:14283377-14283396 | None:intergenic | 40.0% | |
| CGAATTCGACGAATCAAAAC+GGG | + | chr4.4:14282371-14282390 | MS.gene049884:intron | 40.0% | |
| CGTCTCCATTACCACAAATA+GGG | + | chr4.4:14283029-14283048 | MS.gene049884:intron | 40.0% | |
| GAAAAGACCACATGGAGATT+GGG | - | chr4.4:14282660-14282679 | None:intergenic | 40.0% | |
| GAATTCGACGAATCAAAACG+GGG | + | chr4.4:14282372-14282391 | MS.gene049884:intron | 40.0% | |
| GAGAAGGGAAATACAATGGA+AGG | - | chr4.4:14283901-14283920 | None:intergenic | 40.0% | |
| GAGATCTCATTGAACTTCCT+GGG | - | chr4.4:14282352-14282371 | None:intergenic | 40.0% | |
| GCTACCAATTTCATCTCTTC+TGG | + | chr4.4:14281840-14281859 | MS.gene049884:CDS | 40.0% | |
| GGGTGAAACTGAATTGTGAT+GGG | - | chr4.4:14282640-14282659 | None:intergenic | 40.0% | |
| GGTGAAACTGAATTGTGATG+GGG | - | chr4.4:14282639-14282658 | None:intergenic | 40.0% | |
| GTTGACATAACAACACCACA+TGG | - | chr4.4:14281775-14281794 | None:intergenic | 40.0% | |
| GTTTGCGAGCTAAGTGTAAA+GGG | - | chr4.4:14284027-14284046 | None:intergenic | 40.0% | |
| TAAGTGTAAAGGGAAGGGAA+GGG | - | chr4.4:14284017-14284036 | None:intergenic | 40.0% | |
| TCGATCCCAAATTAAGCAGT+TGG | - | chr4.4:14282066-14282085 | None:intergenic | 40.0% | |
| TGCTCTTTATGCTGAGATGT+GGG | - | chr4.4:14282516-14282535 | None:intergenic | 40.0% | |
| TGGGGATTGGAAGAAGATAT+GGG | - | chr4.4:14283164-14283183 | None:intergenic | 40.0% | |
| TGGGTGAAACTGAATTGTGA+TGG | - | chr4.4:14282641-14282660 | None:intergenic | 40.0% | |
| TGTTTGCGAGCTAAGTGTAA+AGG | - | chr4.4:14284028-14284047 | None:intergenic | 40.0% | |
| TTAAGGATAGCCAGAAGACA+AGG | - | chr4.4:14282479-14282498 | None:intergenic | 40.0% | |
| TTCTCATCTTCCTCTTGACA+AGG | - | chr4.4:14283323-14283342 | None:intergenic | 40.0% | |
| TTGCGAAAAACCTTGTCTTC+TGG | + | chr4.4:14282466-14282485 | MS.gene049884:intron | 40.0% | |
| TTTCTTTGAATTGCAGGGAC+TGG | - | chr4.4:14282922-14282941 | None:intergenic | 40.0% | |
| TTTGAACTTGTCCAAGCCAT+TGG | - | chr4.4:14282746-14282765 | None:intergenic | 40.0% | |
| TTTGTTTGAGGACATTTCCG+GGG | - | chr4.4:14282197-14282216 | None:intergenic | 40.0% | |
| ! | AGGTTTTTCGCAACTCATTG+TGG | - | chr4.4:14282459-14282478 | None:intergenic | 40.0% |
| ! | GAATTGTGATGGGGCTTATA+AGG | - | chr4.4:14282630-14282649 | None:intergenic | 40.0% |
| ! | TCTTTGAGGAGGACTTTCAT+CGG | - | chr4.4:14282793-14282812 | None:intergenic | 40.0% |
| ! | TGACAAGGCTAATCAGGTTT+TGG | - | chr4.4:14283308-14283327 | None:intergenic | 40.0% |
| !! | CCTATTTGTGGTAATGGAGA+CGG | - | chr4.4:14283031-14283050 | None:intergenic | 40.0% |
| !! | GCTGCAGAGTATTTTGTTTG+AGG | - | chr4.4:14282209-14282228 | None:intergenic | 40.0% |
| !! | TTCATCTCTTCTGGTTTAGC+TGG | + | chr4.4:14281849-14281868 | MS.gene049884:CDS | 40.0% |
| !! | TTCGCCGGTAGTTTGTTAAA+AGG | + | chr4.4:14283083-14283102 | MS.gene049884:intron | 40.0% |
| !!! | GTTGGCGAGTTTTTGGTTTT+CGG | + | chr4.4:14283619-14283638 | MS.gene049884:intron | 40.0% |
| AAAATACTCTGCAGCTCCCT+TGG | + | chr4.4:14282214-14282233 | MS.gene049884:intron | 45.0% | |
| AAACTACCGGCGAAGTAGAT+GGG | - | chr4.4:14283077-14283096 | None:intergenic | 45.0% | |
| AACTTGTCCAAGCCATTGGA+AGG | - | chr4.4:14282742-14282761 | None:intergenic | 45.0% | |
| ACAGATCACATGAGGAGGAA+TGG | - | chr4.4:14282871-14282890 | None:intergenic | 45.0% | |
| ACTGATGGTCCTGACACTAT+TGG | - | chr4.4:14283265-14283284 | None:intergenic | 45.0% | |
| ACTTCTGTTTCCTTCACGCA+AGG | + | chr4.4:14282303-14282322 | MS.gene049884:intron | 45.0% | |
| ACTTGTCCAAGCCATTGGAA+GGG | - | chr4.4:14282741-14282760 | None:intergenic | 45.0% | |
| AGTTTCACCCAATCTCCATG+TGG | + | chr4.4:14282650-14282669 | MS.gene049884:intron | 45.0% | |
| ATATGTAGTCGTGTCCCTGT+AGG | + | chr4.4:14283597-14283616 | MS.gene049884:intron | 45.0% | |
| ATGGTCCTGACACTATTGGA+TGG | - | chr4.4:14283261-14283280 | None:intergenic | 45.0% | |
| ATGTGCAGCTATCCACATGA+AGG | + | chr4.4:14283111-14283130 | MS.gene049884:intron | 45.0% | |
| CAAAAACTCGCCAACCTACA+GGG | - | chr4.4:14283614-14283633 | None:intergenic | 45.0% | |
| CACTAACCTGATCCAAACCT+GGG | + | chr4.4:14282967-14282986 | MS.gene049884:intron | 45.0% | |
| CAGCTATCCACATGAAGGTT+TGG | + | chr4.4:14283116-14283135 | MS.gene049884:intron | 45.0% | |
| CATGTGATCTGTGCTTCTCA+TGG | + | chr4.4:14282879-14282898 | MS.gene049884:intron | 45.0% | |
| CCGTCTCCATTACCACAAAT+AGG | + | chr4.4:14283028-14283047 | MS.gene049884:intron | 45.0% | |
| CCTGACACTATTGGATGGAA+AGG | - | chr4.4:14283256-14283275 | None:intergenic | 45.0% | |
| CCTTTCCATCCAATAGTGTC+AGG | + | chr4.4:14283253-14283272 | MS.gene049884:intron | 45.0% | |
| CGAGATCTCATTGAACTTCC+TGG | - | chr4.4:14282353-14282372 | None:intergenic | 45.0% | |
| CGAGCTAAGTGTAAAGGGAA+GGG | - | chr4.4:14284022-14284041 | None:intergenic | 45.0% | |
| CTAAGTGTAAAGGGAAGGGA+AGG | - | chr4.4:14284018-14284037 | None:intergenic | 45.0% | |
| CTTCATTAAGTACGGGTTCG+TGG | + | chr4.4:14281734-14281753 | MS.gene049884:CDS | 45.0% | |
| GAGGAGGATCAAATGGAAAG+GGG | + | chr4.4:14281640-14281659 | MS.gene049884:CDS | 45.0% | |
| GCTCTTTATGCTGAGATGTG+GGG | - | chr4.4:14282515-14282534 | None:intergenic | 45.0% | |
| GGAAAAGACCACATGGAGAT+TGG | - | chr4.4:14282661-14282680 | None:intergenic | 45.0% | |
| GGAGGAGGATCAAATGGAAA+GGG | + | chr4.4:14281639-14281658 | MS.gene049884:CDS | 45.0% | |
| TAGTGACATGTTGGAATCCC+TGG | - | chr4.4:14282835-14282854 | None:intergenic | 45.0% | |
| TCACGAATCACTCTCTTTCC+AGG | + | chr4.4:14281884-14281903 | MS.gene049884:CDS | 45.0% | |
| TCCTCTTGACAAGGCTAATC+AGG | - | chr4.4:14283314-14283333 | None:intergenic | 45.0% | |
| TGATTGTGTTTACGCAACCC+AGG | - | chr4.4:14282987-14283006 | None:intergenic | 45.0% | |
| TGGGGCTTATAAGGAGTCAA+TGG | - | chr4.4:14282621-14282640 | None:intergenic | 45.0% | |
| TTATTTGAACGAACCTCCCC+AGG | + | chr4.4:14282332-14282351 | MS.gene049884:intron | 45.0% | |
| TTGACACTATCTACATCGGC+TGG | - | chr4.4:14282682-14282701 | None:intergenic | 45.0% | |
| ! | AAATGGAAAGGGGTATGCGT+GGG | + | chr4.4:14281650-14281669 | MS.gene049884:CDS | 45.0% |
| ! | AAGGAAACAGAAGTGCAGAC+TGG | - | chr4.4:14282297-14282316 | None:intergenic | 45.0% |
| ! | AGATTTGTTCCTCCACTTCC+AGG | + | chr4.4:14282814-14282833 | MS.gene049884:intron | 45.0% |
| ! | GATTTGTTCCTCCACTTCCA+GGG | + | chr4.4:14282815-14282834 | MS.gene049884:intron | 45.0% |
| ! | TGAGAAGCACAGATCACATG+AGG | - | chr4.4:14282879-14282898 | None:intergenic | 45.0% |
| !! | ACCTGATTAGCCTTGTCAAG+AGG | + | chr4.4:14283310-14283329 | MS.gene049884:intron | 45.0% |
| !! | GGAGGGACCTCTAAAACAAT+GGG | + | chr4.4:14282235-14282254 | MS.gene049884:intron | 45.0% |
| !! | TGGAGGGACCTCTAAAACAA+TGG | + | chr4.4:14282234-14282253 | MS.gene049884:intron | 45.0% |
| !!! | TGTTTTAGAGGTCCCTCCAA+GGG | - | chr4.4:14282233-14282252 | None:intergenic | 45.0% |
| !!! | TTGTTTTAGAGGTCCCTCCA+AGG | - | chr4.4:14282234-14282253 | None:intergenic | 45.0% |
| AACTACCGGCGAAGTAGATG+GGG | - | chr4.4:14283076-14283095 | None:intergenic | 50.0% | |
| AAGGAGTCAATGGACATCGC+AGG | - | chr4.4:14282611-14282630 | None:intergenic | 50.0% | |
| AATGGACATCGCAGGTTGTG+GGG | - | chr4.4:14282603-14282622 | None:intergenic | 50.0% | |
| ATCGGCTGGAAAAGACCACA+TGG | - | chr4.4:14282668-14282687 | None:intergenic | 50.0% | |
| ATCTGTGCTTCTCATGGGTG+AGG | + | chr4.4:14282885-14282904 | MS.gene049884:intron | 50.0% | |
| ATGGAGGGAGGAGGATCAAA+TGG | + | chr4.4:14281633-14281652 | MS.gene049884:CDS | 50.0% | |
| ATTCCTAGGCATGCAAACCC+CGG | + | chr4.4:14282177-14282196 | MS.gene049884:intron | 50.0% | |
| CAAACTACCGGCGAAGTAGA+TGG | - | chr4.4:14283078-14283097 | None:intergenic | 50.0% | |
| CAATGGACATCGCAGGTTGT+GGG | - | chr4.4:14282604-14282623 | None:intergenic | 50.0% | |
| CAATTCCCCATCTACTTCGC+CGG | + | chr4.4:14283068-14283087 | MS.gene049884:intron | 50.0% | |
| CATGTTGGAATCCCTGGAAG+TGG | - | chr4.4:14282829-14282848 | None:intergenic | 50.0% | |
| CCAAAAACTCGCCAACCTAC+AGG | - | chr4.4:14283615-14283634 | None:intergenic | 50.0% | |
| CCACTAACCTGATCCAAACC+TGG | + | chr4.4:14282966-14282985 | MS.gene049884:intron | 50.0% | |
| CCAGGTTTGGATCAGGTTAG+TGG | - | chr4.4:14282969-14282988 | None:intergenic | 50.0% | |
| CTTGTCCAAGCCATTGGAAG+GGG | - | chr4.4:14282740-14282759 | None:intergenic | 50.0% | |
| GAAGCACAGATCACATGAGG+AGG | - | chr4.4:14282876-14282895 | None:intergenic | 50.0% | |
| GACCGTTGGAGTCTCGAATA+AGG | + | chr4.4:14282576-14282595 | MS.gene049884:intron | 50.0% | |
| GAGATGTGGGGCATGTATGA+GGG | - | chr4.4:14282503-14282522 | None:intergenic | 50.0% | |
| GCGAGCTAAGTGTAAAGGGA+AGG | - | chr4.4:14284023-14284042 | None:intergenic | 50.0% | |
| GGGAGGAGGATCAAATGGAA+AGG | + | chr4.4:14281638-14281657 | MS.gene049884:CDS | 50.0% | |
| GTGTTTACGCAACCCAGGTT+TGG | - | chr4.4:14282982-14283001 | None:intergenic | 50.0% | |
| TACCATGTCCACTAGCAGCT+TGG | + | chr4.4:14282424-14282443 | MS.gene049884:intron | 50.0% | |
| TCAATGGACATCGCAGGTTG+TGG | - | chr4.4:14282605-14282624 | None:intergenic | 50.0% | |
| TCAGGACCATCAGTGTCCAT+GGG | + | chr4.4:14283271-14283290 | MS.gene049884:intron | 50.0% | |
| TCCAACGGTCAGTGGCTAAA+AGG | - | chr4.4:14282566-14282585 | None:intergenic | 50.0% | |
| TCGCCCATTTGCCCTATTTG+TGG | - | chr4.4:14283043-14283062 | None:intergenic | 50.0% | |
| TCTCATTGAACTTCCTGGGG+AGG | - | chr4.4:14282348-14282367 | None:intergenic | 50.0% | |
| TGAGATGTGGGGCATGTATG+AGG | - | chr4.4:14282504-14282523 | None:intergenic | 50.0% | |
| TGTGACACTTGTGGTAGGTG+AGG | + | chr4.4:14282707-14282726 | MS.gene049884:intron | 50.0% | |
| ! | ACCTTTTAGCCACTGACCGT+TGG | + | chr4.4:14282562-14282581 | MS.gene049884:intron | 50.0% |
| ! | CAAATGGAAAGGGGTATGCG+TGG | + | chr4.4:14281649-14281668 | MS.gene049884:CDS | 50.0% |
| ! | CTGCTAGTGGACATGGTAAC+AGG | - | chr4.4:14282422-14282441 | None:intergenic | 50.0% |
| ! | TTGGACAAATGGGCTCCTTG+TGG | - | chr4.4:14283448-14283467 | None:intergenic | 50.0% |
| !! | CCTGTAGGTTGGCGAGTTTT+TGG | + | chr4.4:14283612-14283631 | MS.gene049884:intron | 50.0% |
| !! | GGCCTTATTCGAGACTCCAA+CGG | - | chr4.4:14282581-14282600 | None:intergenic | 50.0% |
| !! | TTCTGATGGTTGATGGGTCG+TGG | - | chr4.4:14283363-14283382 | None:intergenic | 50.0% |
| AAGCGACTCCAAGCTGCTAG+TGG | - | chr4.4:14282435-14282454 | None:intergenic | 55.0% | |
| ACGCAACCCAGGTTTGGATC+AGG | - | chr4.4:14282976-14282995 | None:intergenic | 55.0% | |
| AGCGAAGATGGCTGCAAGAG+CGG | - | chr4.4:14281697-14281716 | None:intergenic | 55.0% | |
| AGCGCGTACGATCTTCAACG+AGG | - | chr4.4:14283205-14283224 | None:intergenic | 55.0% | |
| AGGATGTTCGCCCCTTCCAA+TGG | + | chr4.4:14282727-14282746 | MS.gene049884:intron | 55.0% | |
| ATACTCTGCAGCTCCCTTGG+AGG | + | chr4.4:14282217-14282236 | MS.gene049884:intron | 55.0% | |
| ATGGACATCGCAGGTTGTGG+GGG | - | chr4.4:14282602-14282621 | None:intergenic | 55.0% | |
| CGGCGAAGTAGATGGGGAAT+TGG | - | chr4.4:14283070-14283089 | None:intergenic | 55.0% | |
| GGGGCATGTATGAGGGCTTA+AGG | - | chr4.4:14282496-14282515 | None:intergenic | 55.0% | |
| GTAGTCGTGTCCCTGTAGGT+TGG | + | chr4.4:14283601-14283620 | MS.gene049884:intron | 55.0% | |
| GTCAGGACCATCAGTGTCCA+TGG | + | chr4.4:14283270-14283289 | MS.gene049884:intron | 55.0% | |
| GTTGAAGATCGTACGCGCTC+TGG | + | chr4.4:14283206-14283225 | MS.gene049884:intron | 55.0% | |
| GTTGGAATCCCTGGAAGTGG+AGG | - | chr4.4:14282826-14282845 | None:intergenic | 55.0% | |
| TACTCTGCAGCTCCCTTGGA+GGG | + | chr4.4:14282218-14282237 | MS.gene049884:intron | 55.0% | |
| TATGCGTGGGCAGTATCTGC+TGG | + | chr4.4:14281663-14281682 | MS.gene049884:CDS | 55.0% | |
| TTCGAGACTCCAACGGTCAG+TGG | - | chr4.4:14282574-14282593 | None:intergenic | 55.0% | |
| TTTCCGGGGTTTGCATGCCT+AGG | - | chr4.4:14282183-14282202 | None:intergenic | 55.0% | |
| ! | CTCCAAGCTGCTAGTGGACA+TGG | - | chr4.4:14282429-14282448 | None:intergenic | 55.0% |
| !! | AGTGTCCATGGGTGCTGGAA+GGG | + | chr4.4:14283282-14283301 | MS.gene049884:intron | 55.0% |
| CCAGCACCCATGGACACTGA+TGG | - | chr4.4:14283280-14283299 | None:intergenic | 60.0% | |
| CCATCAGTGTCCATGGGTGC+TGG | + | chr4.4:14283277-14283296 | MS.gene049884:intron | 60.0% | |
| GTTCGCCCCTTCCAATGGCT+TGG | + | chr4.4:14282732-14282751 | MS.gene049884:intron | 60.0% | |
| TTTGGCCCTTCCAGCACCCA+TGG | - | chr4.4:14283290-14283309 | None:intergenic | 60.0% | |
| ! | ACGCGCTCTGGACTGTGAAG+TGG | + | chr4.4:14283218-14283237 | MS.gene049884:intron | 60.0% |
| !! | CAGTGTCCATGGGTGCTGGA+AGG | + | chr4.4:14283281-14283300 | MS.gene049884:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14281633 | 14284222 | 14281633 | ID=MS.gene049884 |
| chr4.4 | mRNA | 14281633 | 14284222 | 14281633 | ID=MS.gene049884.t1;Parent=MS.gene049884 |
| chr4.4 | exon | 14281633 | 14281905 | 14281633 | ID=MS.gene049884.t1.exon1;Parent=MS.gene049884.t1 |
| chr4.4 | CDS | 14281633 | 14281905 | 14281633 | ID=cds.MS.gene049884.t1;Parent=MS.gene049884.t1 |
| chr4.4 | exon | 14284139 | 14284222 | 14284139 | ID=MS.gene049884.t1.exon2;Parent=MS.gene049884.t1 |
| chr4.4 | CDS | 14284139 | 14284222 | 14284139 | ID=cds.MS.gene049884.t1;Parent=MS.gene049884.t1 |
| Gene Sequence |
| Protein sequence |
