AlfalfaGEDB | MS.gene071960

M. sativa cultivar XinJiangDaYe / MS.gene071960

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF00076.25 PF00098.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071960.t1	XP_024633248.1	93.9	244	1	1	1	230	1	244	1.70E-76	295.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071960.t1	Q9LIN3	74.8	151	34	2	1	149	1	149	7.1e-47	188.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071960.t1	A0A396J0R1	93.9	244	1	1	1	230	1	244	1.2e-76	295.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene071960	0.838106	3.50E-57	-1.69E-46
MS.gene049580	MS.gene071960	0.818475	1.92E-52	-1.69E-46
MS.gene049825	MS.gene071960	0.8254	4.78E-54	-1.69E-46
MS.gene049873	MS.gene071960	0.825406	4.77E-54	-1.69E-46
MS.gene049884	MS.gene071960	0.818901	1.54E-52	-1.69E-46
MS.gene050277	MS.gene071960	0.842834	2.03E-58	-1.69E-46
MS.gene050303	MS.gene071960	0.833244	5.96E-56	-1.69E-46
MS.gene050955	MS.gene071960	0.826799	2.22E-54	-1.69E-46
MS.gene051241	MS.gene071960	0.835282	1.84E-56	-1.69E-46
MS.gene051328	MS.gene071960	0.84549	3.93E-59	-1.69E-46

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071960.t1	MTR_4g070080	57.647	85	35	1	1	85	1	84	4.87e-30	108
MS.gene071960.t1	MTR_4g070080	58.333	84	34	1	1	84	1	83	1.49e-29	108
MS.gene071960.t1	MTR_4g070190	56.250	80	35	0	6	85	7	86	1.43e-27	103
MS.gene071960.t1	MTR_4g070140	56.250	80	35	0	6	85	7	86	5.65e-27	102
MS.gene071960.t1	MTR_7g105260	46.988	83	44	0	7	89	32	114	5.80e-22	88.2
MS.gene071960.t1	MTR_3g025880	42.857	84	48	0	1	84	38	121	4.07e-20	88.6
MS.gene071960.t1	MTR_4g109540	41.667	84	49	0	1	84	36	119	1.84e-18	82.0
MS.gene071960.t1	MTR_7g013730	46.053	76	41	0	8	83	41	116	2.40e-18	81.3
MS.gene071960.t1	MTR_3g075500	47.436	78	41	0	7	84	206	283	1.28e-17	80.1
MS.gene071960.t1	MTR_3g075500	36.905	84	53	0	8	91	110	193	1.91e-11	62.8

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071960.t1	AT3G26420	54.231	260	70	9	1	228	1	243	4.80e-63	197
MS.gene071960.t1	AT2G21660	62.025	79	30	0	6	84	7	85	1.03e-29	108
MS.gene071960.t1	AT4G39260	56.818	88	37	1	1	88	1	87	1.34e-29	106
MS.gene071960.t1	AT1G60650	39.568	139	66	2	6	140	11	135	3.15e-29	111
MS.gene071960.t1	AT1G60650	39.568	139	66	2	6	140	11	135	3.15e-29	111
MS.gene071960.t1	AT5G04280	40.571	175	93	4	1	164	1	175	9.92e-28	107
MS.gene071960.t1	AT4G39260	57.143	84	35	1	1	84	1	83	1.87e-27	102
MS.gene071960.t1	AT4G39260	55.072	69	30	1	1	69	1	68	4.48e-20	82.4
MS.gene071960.t1	AT4G13850	51.190	84	39	1	8	89	36	119	6.36e-20	83.2
MS.gene071960.t1	AT4G13850	53.247	77	36	0	8	84	36	112	6.76e-20	82.4

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

Find 93 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGCATTTGAAAAGTA+CGG	0.478989	2.4:-74777987	MS.gene071960:CDS
AAAGTACGGCAAGCTTGTTG+AGG	0.663446	2.4:-74777973	MS.gene071960:CDS
AAATTCTCTGGGCGTTCTCG+TGG	0.522551	2.4:-74777241	MS.gene071960:CDS
AATCGTAGCCGAGATTATGG+AGG	0.691072	2.4:-74777049	MS.gene071960:CDS
AATGCAGATCGCTCTTATGG+TGG	0.584861	2.4:-74776884	MS.gene071960:CDS
AGAGAAAGTAGATATAGTGG+TGG	0.687288	2.4:-74776923	MS.gene071960:CDS
AGCAATGGAAGAGGCTATTG+AGG	0.547802	2.4:-74777188	MS.gene071960:CDS
AGGAATGCAGATCGCTCTTA+TGG	0.388029	2.4:-74776887	MS.gene071960:CDS
AGTAGATATAGTGGTGGCTA+TGG	0.515924	2.4:-74776917	MS.gene071960:CDS
ATCTCTAGATCCTTGTGGTT+GGG	0.361996	2.4:+74777117	None:intergenic

Showing 1 to 10 of 93 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGGCCCATAATAAAAT+TGG	-	chr2.4:74777277-74777296	MS.gene071960:intron	30.0%
AATTATACATGGAAGGTCAA+TGG	+	chr2.4:74777339-74777358	None:intergenic	30.0%
ACTTATAGCATCTATGAAAC+AGG	+	chr2.4:74777142-74777161	None:intergenic	30.0%
AGCATACAATTATACATGGA+AGG	+	chr2.4:74777346-74777365	None:intergenic	30.0%
AGCATGAAATTGTAACAAGA+TGG	+	chr2.4:74776856-74776875	None:intergenic	30.0%
ATTAGCAAGAAAATGTGTGA+TGG	+	chr2.4:74777435-74777454	None:intergenic	30.0%
CCATGTATAATTGTATGCTT+GGG	-	chr2.4:74777347-74777366	MS.gene071960:intron	30.0%
GTTATTTGTATGAGAGTGAA+AGG	+	chr2.4:74777380-74777399	None:intergenic	30.0%
TCCATGTATAATTGTATGCT+TGG	-	chr2.4:74777346-74777365	MS.gene071960:intron	30.0%
TTAGCAAGAAAATGTGTGAT+GGG	+	chr2.4:74777434-74777453	None:intergenic	30.0%

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	74776694	74778078	74776694	ID=MS.gene071960
chr2.4	mRNA	74776694	74778078	74776694	ID=MS.gene071960.t1;Parent=MS.gene071960
chr2.4	exon	74777968	74778078	74777968	ID=MS.gene071960.t1.exon1;Parent=MS.gene071960.t1
chr2.4	CDS	74777968	74778078	74777968	ID=cds.MS.gene071960.t1;Parent=MS.gene071960.t1
chr2.4	exon	74776694	74777275	74776694	ID=MS.gene071960.t1.exon2;Parent=MS.gene071960.t1
chr2.4	CDS	74776694	74777275	74776694	ID=cds.MS.gene071960.t1;Parent=MS.gene071960.t1

Gene Sequence

>MS.gene071960

ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACTTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTAATTAATTTCATATTTTTACTGTATTTGCTATGTTTATTGTTTTTACCATCTTGTTACAATTTCATGCTTGTTTGTTGTTTTGCGTCATATATATGCATCCTTCTTTACTTTTGCCAACTTCTGTGATTTTTCTTTTATTCATTGATAACATTGGATGAAAAATGGAGTACGCATTGAACTTATTTCTTACAAAATTAGCATACCAAACATAGGATATTGGTGATGCCATGTTTGGATAGATAGTGTAGTTAAGCACTTATAGCATAAATGTTTTTGATATAAGTGCTTATGTATATGCTATTTTTTATAACATCAGCTAAAATGAAGTCAACCTGTTTCATAGATGCTATAAGTTATTTTCATAAGCCATCCTAGAGAGCTTCTGGACATGACATAAGATGTTTTGATAAGCTCTCACAAACAGTCTCACAAGTGCTTATGCAGTAGATAATCTCAAATTAGTCAATTCAAACAGGCCCATAATAAAATTGGTTTTCTACTGAATTTATTTTGTAAGTGGTCATGTGACCATTGACCTTCCATGTATAATTGTATGCTTGGGATTTACTCCTTTCACTCTCATACAAATAACCCTTTCACTATATACATCCCCTGATCCCATTCCCATCACACATTTTCTTGCTAATAATCATTCATTGACATTTAAGGCGCTAAATATTTTGAGTTAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGCGGTGAATGCTTTAAGTGTGGTAAACCCGGTCATTTTGCAAGGGAGTGCCCTAGTGAAGGAGAAAGAGGAGGAAGGTATGGTGGCAGAGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGATAGGGATGGCGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGGGATGGCGGTGGGCGTGACAGGGATGGTGGTGGGCGTGACAGGGATCGCGATCGTGCGGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGA

Protein sequence

>MS.gene071960.t1

MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESRYSGGYGPDRNADRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSGGHR