Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07100.t1 | KEH24379.1 | 90.2 | 224 | 4 | 3 | 9 | 231 | 3 | 209 | 2.50E-67 | 265.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07100.t1 | P0C8Z0 | 70.2 | 121 | 33 | 1 | 9 | 129 | 3 | 120 | 3.0e-45 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07100.t1 | A0A072U3U0 | 90.2 | 224 | 4 | 3 | 9 | 231 | 3 | 209 | 1.8e-67 | 265.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene07100 | -0.845105 | 5.00E-59 | -1.69E-46 |
| MS.gene049255 | MS.gene07100 | 0.912619 | 1.58E-83 | -1.69E-46 |
| MS.gene049340 | MS.gene07100 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene07100 | 0.833965 | 3.94E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene07100 | 0.81854 | 1.86E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene07100 | 0.815453 | 9.18E-52 | -1.69E-46 |
| MS.gene049653 | MS.gene07100 | 0.814195 | 1.74E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene07100 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene07100 | 0.806905 | 6.55E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene07100 | 0.826456 | 2.69E-54 | -1.69E-46 |
| MS.gene049863 | MS.gene07100 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene07100 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene049884 | MS.gene07100 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene07100 | 0.894229 | 3.00E-75 | -1.69E-46 |
| MS.gene050303 | MS.gene07100 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene07100 | 0.860662 | 1.77E-63 | -1.69E-46 |
| MS.gene050689 | MS.gene07100 | 0.870547 | 1.34E-66 | -1.69E-46 |
| MS.gene050752 | MS.gene07100 | 0.874569 | 6.09E-68 | -1.69E-46 |
| MS.gene050838 | MS.gene07100 | 0.844606 | 6.81E-59 | -1.69E-46 |
| MS.gene050916 | MS.gene07100 | 0.821825 | 3.29E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene07100 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene050955 | MS.gene07100 | 0.869917 | 2.16E-66 | -1.69E-46 |
| MS.gene051003 | MS.gene07100 | 0.853099 | 2.99E-61 | -1.69E-46 |
| MS.gene051233 | MS.gene07100 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene07100 | 0.852002 | 6.14E-61 | -1.69E-46 |
| MS.gene051241 | MS.gene07100 | 0.853084 | 3.02E-61 | -1.69E-46 |
| MS.gene051243 | MS.gene07100 | 0.823379 | 1.43E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene07100 | 0.883299 | 5.05E-71 | -1.69E-46 |
| MS.gene051330 | MS.gene07100 | 0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene07100 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene07100 | 0.891377 | 4.20E-74 | -1.69E-46 |
| MS.gene051451 | MS.gene07100 | 0.823256 | 1.53E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene07100 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene07100 | 0.817486 | 3.22E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene07100 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene051791 | MS.gene07100 | 0.800154 | 1.65E-48 | -1.69E-46 |
| MS.gene051850 | MS.gene07100 | 0.808098 | 3.66E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene07100 | 0.83694 | 6.97E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene07100 | 0.850152 | 2.04E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene07100 | 0.820983 | 5.14E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene07100 | 0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene07100 | 0.804112 | 2.53E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene07100 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene07100 | 0.822427 | 2.38E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene07100 | 0.809983 | 1.44E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene07100 | 0.890523 | 9.12E-74 | -1.69E-46 |
| MS.gene053058 | MS.gene07100 | 0.85975 | 3.33E-63 | -1.69E-46 |
| MS.gene053080 | MS.gene07100 | 0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene053109 | MS.gene07100 | 0.819659 | 1.03E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene07100 | 0.837977 | 3.78E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene07100 | 0.819022 | 1.44E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene07100 | 0.800342 | 1.51E-48 | -1.69E-46 |
| MS.gene053590 | MS.gene07100 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene07100 | 0.850522 | 1.61E-60 | -1.69E-46 |
| MS.gene053931 | MS.gene07100 | 0.826745 | 2.29E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene07100 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene07100 | 0.875742 | 2.42E-68 | -1.69E-46 |
| MS.gene055162 | MS.gene07100 | 0.855366 | 6.62E-62 | -1.69E-46 |
| MS.gene05517 | MS.gene07100 | 0.823906 | 1.08E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene07100 | 0.833995 | 3.87E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene07100 | 0.852751 | 3.76E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene07100 | -0.816723 | 4.77E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene07100 | 0.840041 | 1.10E-57 | -1.69E-46 |
| MS.gene055912 | MS.gene07100 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene055979 | MS.gene07100 | 0.834296 | 3.25E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene07100 | -0.819763 | 9.79E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene07100 | 0.83011 | 3.53E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene07100 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene07100 | 0.821008 | 5.07E-53 | -1.69E-46 |
| MS.gene056580 | MS.gene07100 | 0.803689 | 3.09E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene07100 | 0.803509 | 3.37E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene07100 | 0.878358 | 3.00E-69 | -1.69E-46 |
| MS.gene056986 | MS.gene07100 | 0.808604 | 2.85E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene07100 | 0.821228 | 4.51E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene07100 | 0.810764 | 9.80E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene07100 | 0.821927 | 3.11E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene07100 | 0.852232 | 5.28E-61 | -1.69E-46 |
| MS.gene057392 | MS.gene07100 | 0.811634 | 6.35E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene07100 | 0.80687 | 6.67E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene07100 | 0.846165 | 2.58E-59 | -1.69E-46 |
| MS.gene057705 | MS.gene07100 | 0.946961 | 1.69E-105 | -1.69E-46 |
| MS.gene05781 | MS.gene07100 | 0.847209 | 1.34E-59 | -1.69E-46 |
| MS.gene058054 | MS.gene07100 | 0.815069 | 1.12E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene07100 | 0.83613 | 1.12E-56 | -1.69E-46 |
| MS.gene058126 | MS.gene07100 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene07100 | 0.826138 | 3.20E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene07100 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene07100 | 0.823732 | 1.18E-53 | -1.69E-46 |
| MS.gene058976 | MS.gene07100 | 0.815464 | 9.12E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene07100 | 0.853399 | 2.45E-61 | -1.69E-46 |
| MS.gene059317 | MS.gene07100 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene07100 | 0.811509 | 6.76E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene07100 | 0.844036 | 9.69E-59 | -1.69E-46 |
| MS.gene059787 | MS.gene07100 | 0.807011 | 6.23E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene07100 | 0.805327 | 1.41E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene07100 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene07100 | 0.864195 | 1.45E-64 | -1.69E-46 |
| MS.gene06011 | MS.gene07100 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene07100 | 0.877704 | 5.07E-69 | -1.69E-46 |
| MS.gene060587 | MS.gene07100 | 0.805166 | 1.52E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene07100 | 0.849181 | 3.81E-60 | -1.69E-46 |
| MS.gene060830 | MS.gene07100 | 0.829872 | 4.04E-55 | -1.69E-46 |
| MS.gene060917 | MS.gene07100 | 0.842762 | 2.12E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07100.t1 | MTR_7g108860 | 94.017 | 234 | 3 | 3 | 8 | 231 | 10 | 242 | 5.74e-149 | 414 |
| MS.gene07100.t1 | MTR_7g108860 | 93.991 | 233 | 3 | 3 | 9 | 231 | 3 | 234 | 2.90e-148 | 412 |
| MS.gene07100.t1 | MTR_8g058597 | 93.991 | 233 | 3 | 3 | 9 | 231 | 3 | 234 | 2.90e-148 | 412 |
| MS.gene07100.t1 | MTR_7g108860 | 93.069 | 202 | 4 | 2 | 9 | 200 | 3 | 204 | 3.67e-127 | 358 |
| MS.gene07100.t1 | MTR_7g108860 | 86.607 | 224 | 12 | 3 | 9 | 231 | 3 | 209 | 3.56e-92 | 270 |
| MS.gene07100.t1 | MTR_1g088700 | 55.263 | 228 | 50 | 5 | 9 | 231 | 3 | 183 | 7.49e-73 | 219 |
| MS.gene07100.t1 | MTR_6g034550 | 49.640 | 139 | 66 | 1 | 9 | 143 | 3 | 141 | 2.40e-41 | 139 |
| MS.gene07100.t1 | MTR_6g027770 | 47.664 | 107 | 55 | 1 | 9 | 115 | 3 | 108 | 1.86e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07100.t1 | AT4G02450 | 59.350 | 123 | 48 | 2 | 9 | 130 | 3 | 124 | 1.29e-47 | 157 |
| MS.gene07100.t1 | AT4G02450 | 59.350 | 123 | 48 | 2 | 9 | 130 | 3 | 124 | 1.33e-47 | 157 |
| MS.gene07100.t1 | AT3G03773 | 51.351 | 111 | 52 | 2 | 9 | 119 | 3 | 111 | 3.43e-33 | 116 |
| MS.gene07100.t1 | AT3G03773 | 51.351 | 111 | 52 | 2 | 9 | 119 | 3 | 111 | 4.20e-33 | 117 |
| MS.gene07100.t1 | AT3G03773 | 50.893 | 112 | 53 | 2 | 8 | 119 | 56 | 165 | 6.98e-33 | 118 |
Find 0 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAGATAATAATTTTTC+GGG | - | 51680:19113-19132 | None:intergenic | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | 51680:19065-19084 | MS.gene07100:intron | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | 51680:19064-19083 | MS.gene07100:intron | 10.0% |
| !!! | TTTTGTTGATATTAATTTTT+AGG | + | 51680:18047-18066 | MS.gene07100:intron | 10.0% |
| !! | AGATTATTAATTTCAATTTG+AGG | + | 51680:19517-19536 | MS.gene07100:intron | 15.0% |
| !! | GATTATTAATTTCAATTTGA+GGG | + | 51680:19518-19537 | MS.gene07100:intron | 15.0% |
| !! | TATCCATTAAAAAAATTCAA+AGG | - | 51680:17891-17910 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | 51680:18780-18799 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | 51680:19141-19160 | MS.gene07100:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | 51680:19179-19198 | None:intergenic | 15.0% |
| !!! | TTTGAATTTTTTTAATGGAT+AGG | + | 51680:17890-17909 | MS.gene07100:intron | 15.0% |
| !! | AAACTCTTTGAATTAATACT+CGG | - | 51680:19217-19236 | None:intergenic | 20.0% |
| !! | ACTAAGAAAAAGGAAATTAA+AGG | - | 51680:19629-19648 | None:intergenic | 20.0% |
| !! | CTAAGAAAAAGGAAATTAAA+GGG | - | 51680:19628-19647 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | 51680:18753-18772 | MS.gene07100:intron | 20.0% |
| !! | TAAGAAAAAGGAAATTAAAG+GGG | - | 51680:19627-19646 | None:intergenic | 20.0% |
| !! | TCATTATGTGAAAATAGATT+GGG | + | 51680:17817-17836 | MS.gene07100:CDS | 20.0% |
| !!! | GGACAACAATATATTTTTAT+TGG | + | 51680:17911-17930 | MS.gene07100:intron | 20.0% |
| !!! | GTTTTGATTTATATGCTTAT+CGG | + | 51680:17296-17315 | MS.gene07100:intron | 20.0% |
| !!! | TGTCCTTTGAATTTTTTTAA+TGG | + | 51680:17885-17904 | MS.gene07100:intron | 20.0% |
| !!! | TTATTAGAGCTGTTTTAAAA+TGG | + | 51680:17265-17284 | MS.gene07100:intron | 20.0% |
| ! | AAGAAAAAGGAAATTAAAGG+GGG | - | 51680:19626-19645 | None:intergenic | 25.0% |
| ! | ACACTTCTTGATCTATAATT+GGG | - | 51680:19783-19802 | None:intergenic | 25.0% |
| ! | ACTGTACATACTAAACAAAA+AGG | + | 51680:18860-18879 | MS.gene07100:intron | 25.0% |
| ! | AGAAATATTGTAGTGAGAAA+TGG | - | 51680:18193-18212 | None:intergenic | 25.0% |
| ! | ATCAACAAAATGATACAACT+GGG | - | 51680:18037-18056 | None:intergenic | 25.0% |
| ! | CTCATTATGTGAAAATAGAT+TGG | + | 51680:17816-17835 | MS.gene07100:CDS | 25.0% |
| ! | CTTTCTTGTATATGACTATT+TGG | + | 51680:17211-17230 | MS.gene07100:intron | 25.0% |
| ! | GAAAATAGATTGGGATAAAT+GGG | + | 51680:17826-17845 | MS.gene07100:CDS | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | 51680:18758-18777 | MS.gene07100:intron | 25.0% |
| ! | TATCAACAAAATGATACAAC+TGG | - | 51680:18038-18057 | None:intergenic | 25.0% |
| ! | TGAAAATAGATTGGGATAAA+TGG | + | 51680:17825-17844 | MS.gene07100:CDS | 25.0% |
| !! | CAATCTATTTTCACATAATG+AGG | - | 51680:17818-17837 | None:intergenic | 25.0% |
| !!! | AAGATCAACTTTGGAATTTT+TGG | - | 51680:17415-17434 | None:intergenic | 25.0% |
| !!! | CATGATACTTAGATTTTTTG+TGG | + | 51680:18704-18723 | MS.gene07100:intron | 25.0% |
| !!! | GACAATGTAGCTTTAAATAT+TGG | + | 51680:19299-19318 | MS.gene07100:intron | 25.0% |
| AAAGTTCGTTGTTAACATGA+GGG | + | 51680:19329-19348 | MS.gene07100:intron | 30.0% | |
| ATAAAATTCCATCTGTCCAA+TGG | - | 51680:18253-18272 | None:intergenic | 30.0% | |
| ATGTCAAGCAACTAAGAAAA+AGG | - | 51680:19639-19658 | None:intergenic | 30.0% | |
| CAACGTAAAACATCAATAGA+AGG | - | 51680:18306-18325 | None:intergenic | 30.0% | |
| CATTCAGGTAAACATTCATA+AGG | - | 51680:17564-17583 | None:intergenic | 30.0% | |
| CTATGTCCTAAAATGAAAGA+TGG | + | 51680:17537-17556 | MS.gene07100:intron | 30.0% | |
| GACACTTCTTGATCTATAAT+TGG | - | 51680:19784-19803 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | + | 51680:18991-19010 | MS.gene07100:intron | 30.0% | |
| TAAAGTTCGTTGTTAACATG+AGG | + | 51680:19328-19347 | MS.gene07100:intron | 30.0% | |
| TGATCTATAATTGGGAAACA+CGG | - | 51680:19775-19794 | None:intergenic | 30.0% | |
| TTAAGGAAACCAAAAGTAGT+AGG | + | 51680:18110-18129 | MS.gene07100:intron | 30.0% | |
| ! | ATATGCTTTTATGTAGAAGC+AGG | + | 51680:19245-19264 | MS.gene07100:intron | 30.0% |
| ! | ATGAGCATCTAGTTCAAAAA+AGG | - | 51680:19700-19719 | None:intergenic | 30.0% |
| ! | TAAGGACCATCTTTCATTTT+AGG | - | 51680:17546-17565 | None:intergenic | 30.0% |
| ! | TGAGCATCTAGTTCAAAAAA+GGG | - | 51680:19699-19718 | None:intergenic | 30.0% |
| ! | TTACCTGAATGAGTTGAATA+AGG | + | 51680:17573-17592 | MS.gene07100:intron | 30.0% |
| ! | TTTTTCTTAGTTGCTTGACA+TGG | + | 51680:19638-19657 | MS.gene07100:intron | 30.0% |
| !! | CTATTTCTAACCTCTTCAAT+TGG | + | 51680:18211-18230 | MS.gene07100:intron | 30.0% |
| !!! | AAGCATTTTTAGAATGGTTG+TGG | + | 51680:17634-17653 | MS.gene07100:intron | 30.0% |
| !!! | CTGTTTTAAAATGGATGTGT+TGG | + | 51680:17274-17293 | MS.gene07100:intron | 30.0% |
| ACTACTGTGTTCATATGCAT+TGG | + | 51680:18947-18966 | MS.gene07100:intron | 35.0% | |
| AGTCCTTATTCAACTCATTC+AGG | - | 51680:17579-17598 | None:intergenic | 35.0% | |
| ATGCTTTGCTTGCAAAGATA+TGG | + | 51680:17659-17678 | MS.gene07100:intron | 35.0% | |
| CTAATTTACGTTAAGTCCCA+AGG | - | 51680:18925-18944 | None:intergenic | 35.0% | |
| CTGTTTATGCACATGATACT+TGG | + | 51680:18666-18685 | MS.gene07100:intron | 35.0% | |
| CTTTGACAAGGTTAATGTAG+AGG | + | 51680:17509-17528 | MS.gene07100:CDS | 35.0% | |
| GAAAAGGTAAAATCACCTTC+TGG | - | 51680:17441-17460 | None:intergenic | 35.0% | |
| GAAATCTGATCGAATTGTCT+CGG | + | 51680:17933-17952 | MS.gene07100:intron | 35.0% | |
| GATCTATAATTGGGAAACAC+GGG | - | 51680:19774-19793 | None:intergenic | 35.0% | |
| TGTGTACTACTGCAGAAATT+CGG | + | 51680:18333-18352 | MS.gene07100:intron | 35.0% | |
| TTCCTTAACAAGTGCCTTAA+GGG | - | 51680:18098-18117 | None:intergenic | 35.0% | |
| TTCTAACCTCTTCAATTGGT+GGG | + | 51680:18215-18234 | MS.gene07100:intron | 35.0% | |
| TTGGGACCGAAAATTGTAAA+GGG | + | 51680:19083-19102 | MS.gene07100:intron | 35.0% | |
| TTTCCTTAACAAGTGCCTTA+AGG | - | 51680:18099-18118 | None:intergenic | 35.0% | |
| TTTCTAACCTCTTCAATTGG+TGG | + | 51680:18214-18233 | MS.gene07100:intron | 35.0% | |
| ! | AAAGTTGATCTTACTCCAGA+AGG | + | 51680:17423-17442 | MS.gene07100:CDS | 35.0% |
| ! | GAAGGTGATTTTACCTTTTC+TGG | + | 51680:17441-17460 | MS.gene07100:CDS | 35.0% |
| ! | GAGCATCTAGTTCAAAAAAG+GGG | - | 51680:19698-19717 | None:intergenic | 35.0% |
| ! | GGAGATCCCTTTACAATTTT+CGG | - | 51680:19092-19111 | None:intergenic | 35.0% |
| !! | TTCTGGAGTAAGATCAACTT+TGG | - | 51680:17424-17443 | None:intergenic | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | 51680:19151-19170 | MS.gene07100:intron | 35.0% |
| AGTTGCTTGACATGGCTATT+GGG | + | 51680:19646-19665 | MS.gene07100:intron | 40.0% | |
| CAAAAGTAGTAGGCTTGCAT+TGG | + | 51680:18120-18139 | MS.gene07100:intron | 40.0% | |
| CATATTCTGTGTAGTGCAGA+AGG | + | 51680:17745-17764 | MS.gene07100:CDS | 40.0% | |
| CGTTGTTAACATGAGGGTTA+AGG | + | 51680:19335-19354 | MS.gene07100:intron | 40.0% | |
| CTGCAATCAAAGAGTCATGA+AGG | - | 51680:17696-17715 | None:intergenic | 40.0% | |
| CTTCATGACTCTTTGATTGC+AGG | + | 51680:17694-17713 | MS.gene07100:intron | 40.0% | |
| CTTGGGACCGAAAATTGTAA+AGG | + | 51680:19082-19101 | MS.gene07100:intron | 40.0% | |
| GAAACTTGAGCTCTTTGACA+AGG | + | 51680:17497-17516 | MS.gene07100:CDS | 40.0% | |
| GAAAGGGGGTTAAAGAAAAG+AGG | + | 51680:19552-19571 | MS.gene07100:intron | 40.0% | |
| GATATGATCCATTGGACAGA+TGG | + | 51680:18242-18261 | MS.gene07100:intron | 40.0% | |
| TAAATGGGTCGATGAAGATG+AGG | + | 51680:17841-17860 | MS.gene07100:CDS | 40.0% | |
| TAGTTGCTTGACATGGCTAT+TGG | + | 51680:19645-19664 | MS.gene07100:intron | 40.0% | |
| TCTAACCTCTTCAATTGGTG+GGG | + | 51680:18216-18235 | MS.gene07100:intron | 40.0% | |
| TGTGTACTGCAGAAATTTGC+TGG | + | 51680:18556-18575 | MS.gene07100:intron | 40.0% | |
| ! | CAATGCAAGCCTACTACTTT+TGG | - | 51680:18122-18141 | None:intergenic | 40.0% |
| ! | CGAATTGTCTCGGTTTTTGT+TGG | + | 51680:17943-17962 | MS.gene07100:intron | 40.0% |
| ! | GTGTACTGCAGAAATTTGCT+GGG | + | 51680:18557-18576 | MS.gene07100:intron | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | 51680:19152-19171 | MS.gene07100:intron | 40.0% |
| !! | CAATTTGAGGGCATTCACTT+GGG | + | 51680:19530-19549 | MS.gene07100:intron | 40.0% |
| !! | GGTCGCAAGCATTTTTAGAA+TGG | + | 51680:17628-17647 | MS.gene07100:intron | 40.0% |
| !! | TCAATTTGAGGGCATTCACT+TGG | + | 51680:19529-19548 | MS.gene07100:intron | 40.0% |
| !! | TTTACCTTTTCTGGTAGTGC+TGG | + | 51680:17450-17469 | MS.gene07100:CDS | 40.0% |
| AAATGCCACAAGTGCCCTTA+AGG | + | 51680:18081-18100 | MS.gene07100:intron | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | + | 51680:18905-18924 | MS.gene07100:intron | 45.0% | |
| ATTACGTTGCAGCGAACCTT+GGG | + | 51680:18906-18925 | MS.gene07100:intron | 45.0% | |
| ATTGACGAGAGTGACGATGA+AGG | + | 51680:18604-18623 | MS.gene07100:CDS | 45.0% | |
| CAGGAGAGCAAAATCAGTGT+AGG | + | 51680:17713-17732 | MS.gene07100:intron | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | - | 51680:18900-18919 | None:intergenic | 45.0% | |
| GATGAAGATGAGGCTGAAGA+AGG | + | 51680:17851-17870 | MS.gene07100:CDS | 45.0% | |
| GATGATCCAATGGGAGGAAT+GGG | + | 51680:18369-18388 | MS.gene07100:CDS | 45.0% | |
| GTACTACTGCAGAAATTCGG+CGG | + | 51680:18336-18355 | MS.gene07100:intron | 45.0% | |
| TACTACTGCAGAAATTCGGC+GGG | + | 51680:18337-18356 | MS.gene07100:intron | 45.0% | |
| TGATGATCCAATGGGAGGAA+TGG | + | 51680:18368-18387 | MS.gene07100:CDS | 45.0% | |
| TGGGGTGTGATATGATCCAT+TGG | + | 51680:18234-18253 | MS.gene07100:intron | 45.0% | |
| ! | AAGGATGTTAGCTCGAGTTG+CGG | + | 51680:19354-19373 | MS.gene07100:intron | 45.0% |
| ! | ATGGGTGGTGATGATCCAAT+GGG | + | 51680:18360-18379 | MS.gene07100:CDS | 45.0% |
| ! | CTTGGGAGGAATGGATTTCT+CGG | + | 51680:17986-18005 | MS.gene07100:CDS | 45.0% |
| ! | TGATACTAGCCTGCTTATGC+TGG | + | 51680:17604-17623 | MS.gene07100:intron | 45.0% |
| ! | TGCCCTTAAGGCACTTGTTA+AGG | + | 51680:18093-18112 | MS.gene07100:intron | 45.0% |
| ! | TGTCTCGGTTTTTGTTGGTC+AGG | + | 51680:17948-17967 | MS.gene07100:intron | 45.0% |
| !! | ACTGCAGAAATTTGCTGGGA+TGG | + | 51680:18561-18580 | MS.gene07100:intron | 45.0% |
| !! | CTGCAGAAATTTGCTGGGAT+GGG | + | 51680:18562-18581 | MS.gene07100:intron | 45.0% |
| !! | GATCAAGAAGTGTCAAAGCC+TGG | + | 51680:19790-19809 | MS.gene07100:intron | 45.0% |
| !! | TGATGTTGACTTGGGAGGAA+TGG | + | 51680:17977-17996 | MS.gene07100:CDS | 45.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | 51680:19114-19133 | None:intergenic | 5.0% |
| AAATTTGTCCGGTCCCGACT+TGG | - | 51680:19168-19187 | None:intergenic | 50.0% | |
| AATGGAAGGACTGGGAGGAA+TGG | + | 51680:18452-18471 | MS.gene07100:CDS | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | 51680:19167-19186 | None:intergenic | 50.0% | |
| AGCACCAGCACTACCAGAAA+AGG | - | 51680:17457-17476 | None:intergenic | 50.0% | |
| ATGGGAGGAATGGAAGGACT+GGG | + | 51680:18444-18463 | MS.gene07100:CDS | 50.0% | |
| GGTCTACATCACAGTGCAGT+TGG | + | 51680:17383-17402 | MS.gene07100:CDS | 50.0% | |
| TCACACCCCACCAATTGAAG+AGG | - | 51680:18224-18243 | None:intergenic | 50.0% | |
| TCGTCATCCCGAGGTTAAGT+GGG | + | 51680:17344-17363 | MS.gene07100:CDS | 50.0% | |
| TCTCTGTGCCCACTTAACCT+CGG | - | 51680:17355-17374 | None:intergenic | 50.0% | |
| ! | AGGGCATTCACTTGGGAAAG+GGG | + | 51680:19537-19556 | MS.gene07100:intron | 50.0% |
| ! | AGGTGGTGGTGATGTTGACT+TGG | + | 51680:17968-17987 | MS.gene07100:intron | 50.0% |
| ! | CTCGGTTTTTGTTGGTCAGG+TGG | + | 51680:17951-17970 | MS.gene07100:intron | 50.0% |
| ! | GATGGGTGGTGATGATCCAA+TGG | + | 51680:18359-18378 | MS.gene07100:CDS | 50.0% |
| ! | GGTTTTTGTTGGTCAGGTGG+TGG | + | 51680:17954-17973 | MS.gene07100:intron | 50.0% |
| ! | TACTAGCCTGCTTATGCTGG+TGG | + | 51680:17607-17626 | MS.gene07100:intron | 50.0% |
| !! | AAGTGCCTTAAGGGCACTTG+TGG | - | 51680:18089-18108 | None:intergenic | 50.0% |
| !! | CAGAAATTTGCTGGGATGGG+TGG | + | 51680:18565-18584 | MS.gene07100:intron | 50.0% |
| !! | GAGGGCATTCACTTGGGAAA+GGG | + | 51680:19536-19555 | MS.gene07100:intron | 50.0% |
| !! | GGTGGTGGTGATGTTGACTT+GGG | + | 51680:17969-17988 | MS.gene07100:intron | 50.0% |
| !! | TGAGGGCATTCACTTGGGAA+AGG | + | 51680:19535-19554 | MS.gene07100:intron | 50.0% |
| !!! | TTTTCTGGTAGTGCTGGTGC+TGG | + | 51680:17456-17475 | MS.gene07100:CDS | 50.0% |
| AAGAGGTTGCTGCGTGGAGA+AGG | + | 51680:17785-17804 | MS.gene07100:CDS | 55.0% | |
| AATGGGAGGAATGGGAGGCA+TGG | + | 51680:18377-18396 | MS.gene07100:CDS | 55.0% | |
| ACTGCAGAAATTCGGCGGGA+TGG | + | 51680:18341-18360 | MS.gene07100:intron | 55.0% | |
| AGAAGGCTGAGAGTGGATGG+TGG | + | 51680:17762-17781 | MS.gene07100:CDS | 55.0% | |
| ATGATGCAGTCGTCATCCCG+AGG | + | 51680:17335-17354 | MS.gene07100:intron | 55.0% | |
| ATGCCTCCCATTCCTCCCAT+TGG | - | 51680:18378-18397 | None:intergenic | 55.0% | |
| CATGGGAGGAATGGAAGGAC+TGG | + | 51680:18443-18462 | MS.gene07100:CDS | 55.0% | |
| CTCTGTGCCCACTTAACCTC+GGG | - | 51680:17354-17373 | None:intergenic | 55.0% | |
| CTGCAGAAATTCGGCGGGAT+GGG | + | 51680:18342-18361 | MS.gene07100:intron | 55.0% | |
| GATCCAATGGGAGGAATGGG+AGG | + | 51680:18372-18391 | MS.gene07100:CDS | 55.0% | |
| GGGCATTCACTTGGGAAAGG+GGG | + | 51680:19538-19557 | MS.gene07100:intron | 55.0% | |
| GTAGTGCAGAAGGCTGAGAG+TGG | + | 51680:17755-17774 | MS.gene07100:CDS | 55.0% | |
| GTCGTCATCCCGAGGTTAAG+TGG | + | 51680:17343-17362 | MS.gene07100:intron | 55.0% | |
| GTGGGCACAGAGAGTAGACA+AGG | + | 51680:17362-17381 | MS.gene07100:CDS | 55.0% | |
| TGCAGAAGGCTGAGAGTGGA+TGG | + | 51680:17759-17778 | MS.gene07100:CDS | 55.0% | |
| TTGCGACCACCAGCATAAGC+AGG | - | 51680:17616-17635 | None:intergenic | 55.0% | |
| ! | AATGGGAGGCATGGGAGGAA+TGG | + | 51680:18434-18453 | MS.gene07100:CDS | 55.0% |
| ! | ATGGGAGGAATGGGAGGCAT+GGG | + | 51680:18378-18397 | MS.gene07100:CDS | 55.0% |
| ! | GGTGGTGATGATCCAATGGG+AGG | + | 51680:18363-18382 | MS.gene07100:CDS | 55.0% |
| ! | GTTAGCTCGAGTTGCGGAAG+TGG | + | 51680:19360-19379 | MS.gene07100:intron | 55.0% |
| ! | TGGGATGGGTGGTGATGCAA+TGG | + | 51680:18576-18595 | MS.gene07100:CDS | 55.0% |
| !! | CTGAGAGTGGATGGTGGAAG+AGG | + | 51680:17768-17787 | MS.gene07100:CDS | 55.0% |
| !! | GGTGGTGATGTTGACTTGGG+AGG | + | 51680:17972-17991 | MS.gene07100:CDS | 55.0% |
| ACATTGGCCCAAGTCGGGAC+CGG | + | 51680:19157-19176 | MS.gene07100:intron | 60.0% | |
| CAGAAATTCGGCGGGATGGG+TGG | + | 51680:18345-18364 | MS.gene07100:intron | 60.0% | |
| CATGGGAGGAATGGGAGGCA+TGG | + | 51680:18425-18444 | MS.gene07100:CDS | 60.0% | |
| CCAGCAGCATCTTGCTCTCC+AGG | - | 51680:19811-19830 | None:intergenic | 60.0% | |
| CCTGGAGAGCAAGATGCTGC+TGG | + | 51680:19808-19827 | MS.gene07100:CDS | 60.0% | |
| GGAGGAATGGAAGGACTGGG+AGG | + | 51680:18447-18466 | MS.gene07100:CDS | 60.0% | |
| GTTGCTGCGTGGAGAAGGCA+AGG | + | 51680:17790-17809 | MS.gene07100:CDS | 60.0% | |
| TGGTGGAAGAGGTTGCTGCG+TGG | + | 51680:17779-17798 | MS.gene07100:CDS | 60.0% | |
| ! | ATGGGGGGCATGGGAGGAAT+GGG | + | 51680:18417-18436 | MS.gene07100:CDS | 60.0% |
| ! | CGGCTTGGGAGGAATGATGG+GGG | + | 51680:18401-18420 | MS.gene07100:CDS | 60.0% |
| ! | GCGGCTTGGGAGGAATGATG+GGG | + | 51680:18400-18419 | MS.gene07100:CDS | 60.0% |
| ! | GGAGGAATGATGGGGGGCAT+GGG | + | 51680:18408-18427 | MS.gene07100:CDS | 60.0% |
| ! | GGAGGCATGGGAGGAATGGA+AGG | + | 51680:18438-18457 | MS.gene07100:CDS | 60.0% |
| ! | GGCGGCTTGGGAGGAATGAT+GGG | + | 51680:18399-18418 | MS.gene07100:CDS | 60.0% |
| ! | GGCTTGGGAGGAATGATGGG+GGG | + | 51680:18402-18421 | MS.gene07100:CDS | 60.0% |
| ! | AATGGGAGGCATGGGCGGCT+TGG | + | 51680:18386-18405 | MS.gene07100:CDS | 65.0% |
| ! | ATGGGAGGCATGGGCGGCTT+GGG | + | 51680:18387-18406 | MS.gene07100:CDS | 65.0% |
| ! | GATGCTGCTGGCAAGAGCGC+TGG | + | 51680:19820-19839 | MS.gene07100:CDS | 65.0% |
| ! | GATGGGGGGCATGGGAGGAA+TGG | + | 51680:18416-18435 | MS.gene07100:CDS | 65.0% |
| ! | GGAATGATGGGGGGCATGGG+AGG | + | 51680:18411-18430 | MS.gene07100:CDS | 65.0% |
| ! | GGAGGAATGGGAGGCATGGG+AGG | + | 51680:18381-18400 | MS.gene07100:CDS | 65.0% |
| ! | GGAGGAATGGGAGGCATGGG+CGG | + | 51680:18381-18400 | MS.gene07100:CDS | 65.0% |
| ! | GGGAGGAATGATGGGGGGCA+TGG | + | 51680:18407-18426 | MS.gene07100:CDS | 65.0% |
| ! | GGGCGGCTTGGGAGGAATGA+TGG | + | 51680:18398-18417 | MS.gene07100:CDS | 65.0% |
| !! | TGCTGGCAAGAGCGCTGGTG+AGG | + | 51680:19825-19844 | MS.gene07100:CDS | 65.0% |
| ! | GGGGGCATGGGAGGAATGGG+AGG | + | 51680:18420-18439 | MS.gene07100:CDS | 70.0% |
| ! | GGAGGCATGGGCGGCTTGGG+AGG | + | 51680:18390-18409 | MS.gene07100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51680 | gene | 17161 | 19888 | 17161 | ID=MS.gene07100 |
| 51680 | mRNA | 17161 | 19888 | 17161 | ID=MS.gene07100.t1;Parent=MS.gene07100 |
| 51680 | exon | 17161 | 17183 | 17161 | ID=MS.gene07100.t1.exon1;Parent=MS.gene07100.t1 |
| 51680 | CDS | 17161 | 17183 | 17161 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 17344 | 17530 | 17344 | ID=MS.gene07100.t1.exon2;Parent=MS.gene07100.t1 |
| 51680 | CDS | 17344 | 17530 | 17344 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 17716 | 17872 | 17716 | ID=MS.gene07100.t1.exon3;Parent=MS.gene07100.t1 |
| 51680 | CDS | 17716 | 17872 | 17716 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 17970 | 18007 | 17970 | ID=MS.gene07100.t1.exon4;Parent=MS.gene07100.t1 |
| 51680 | CDS | 17970 | 18007 | 17970 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 18348 | 18482 | 18348 | ID=MS.gene07100.t1.exon5;Parent=MS.gene07100.t1 |
| 51680 | CDS | 18348 | 18482 | 18348 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 18568 | 18625 | 18568 | ID=MS.gene07100.t1.exon6;Parent=MS.gene07100.t1 |
| 51680 | CDS | 18568 | 18625 | 18568 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| 51680 | exon | 19791 | 19888 | 19791 | ID=MS.gene07100.t1.exon7;Parent=MS.gene07100.t1 |
| 51680 | CDS | 19791 | 19888 | 19791 | ID=cds.MS.gene07100.t1;Parent=MS.gene07100.t1 |
| Gene Sequence |
| Protein sequence |
