Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050111.t1 | XP_024640214.1 | 95.1 | 309 | 12 | 1 | 1 | 306 | 223 | 531 | 5.00E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050111.t1 | O80505 | 66.0 | 306 | 83 | 2 | 1 | 303 | 218 | 505 | 9.9e-113 | 407.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050111.t1 | A0A396GUX5 | 94.8 | 309 | 13 | 1 | 1 | 306 | 227 | 535 | 2.3e-163 | 584.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050111 | MS.gene08289 | 0.848913 | 4.53E-60 | -1.69E-46 |
| MS.gene050111 | MS.gene34901 | 0.845889 | 3.06E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCGACTCTTGATTA+TGG | 0.218008 | 4.4:+17075768 | None:intergenic |
| ACCCGAGGTAGAACACTAAA+AGG | 0.263152 | 4.4:-17076874 | None:intergenic |
| AACTACCTTTAGATTCAAAT+TGG | 0.264867 | 4.4:-17079231 | None:intergenic |
| GCAGTGTTTGCATCCGCATT+TGG | 0.292719 | 4.4:+17075805 | MS.gene050111:CDS |
| AGTGCGGATGTGAGGAATAA+TGG | 0.296933 | 4.4:+17079256 | MS.gene050111:CDS |
| GTCTTGTAGTTGTAGAGATA+TGG | 0.316331 | 4.4:+17079317 | MS.gene050111:CDS |
| TCCATCCGTGACATTTATAA+TGG | 0.338338 | 4.4:+17078191 | MS.gene050111:CDS |
| CAGTGTTTGCATCCGCATTT+GGG | 0.343917 | 4.4:+17075806 | MS.gene050111:CDS |
| CTTGATTGAGAAGATATATC+TGG | 0.366761 | 4.4:+17079291 | MS.gene050111:CDS |
| TTTAGTCGACTCTTGATTAT+GGG | 0.371488 | 4.4:+17075769 | None:intergenic |
| AACGATTGTTTCCATTTGGC+AGG | 0.385919 | 4.4:+17076704 | MS.gene050111:CDS |
| CTAGTAATCCTTTGTGGCCG+TGG | 0.386080 | 4.4:-17078258 | None:intergenic |
| AAAGCCAGACCACATCAAAA+TGG | 0.393622 | 4.4:-17079143 | None:intergenic |
| TGAATGAAGCTGCTGGTGTC+TGG | 0.395897 | 4.4:-17076825 | None:intergenic |
| ATCTCTGTATACTGTGCTCT+GGG | 0.396880 | 4.4:+17079400 | MS.gene050111:CDS |
| GGGGCTTTGCCATGCATACT+GGG | 0.398330 | 4.4:+17076726 | MS.gene050111:CDS |
| GCCTTCCTACTCAGAAAACT+TGG | 0.399995 | 4.4:+17076793 | MS.gene050111:CDS |
| GATCTCTGTATACTGTGCTC+TGG | 0.401154 | 4.4:+17079399 | MS.gene050111:CDS |
| GGATCATGTACTCTTGGATA+TGG | 0.409280 | 4.4:+17079422 | MS.gene050111:CDS |
| CTCTGGGGATCATGTACTCT+TGG | 0.411393 | 4.4:+17079416 | MS.gene050111:CDS |
| TCTTGTAGTTGTAGAGATAT+GGG | 0.420668 | 4.4:+17079318 | MS.gene050111:CDS |
| ATCCAACGATTGTTTCCATT+TGG | 0.422788 | 4.4:+17076700 | MS.gene050111:CDS |
| AGGCGAGTGGAATTACAAAA+TGG | 0.425510 | 4.4:-17078347 | None:intergenic |
| AAGTTAATGAGATTTAACTA+TGG | 0.453461 | 4.4:-17079455 | None:intergenic |
| TCATTCACTGCAGGGCTAGT+AGG | 0.458683 | 4.4:+17076841 | MS.gene050111:CDS |
| CGGGGTTTGTGCTGCAACAA+AGG | 0.460841 | 4.4:-17078367 | None:intergenic |
| ATCCATCTAGTAATCCTTTG+TGG | 0.486113 | 4.4:-17078264 | None:intergenic |
| CCCGAGGTAGAACACTAAAA+GGG | 0.487237 | 4.4:-17076873 | None:intergenic |
| GCTGGCCAATTTGAATCTAA+AGG | 0.503438 | 4.4:+17079226 | MS.gene050111:CDS |
| GGCCACAAAGGATTACTAGA+TGG | 0.508254 | 4.4:+17078262 | MS.gene050111:CDS |
| CCAGCAGCTTCATTCACTGC+AGG | 0.510812 | 4.4:+17076832 | MS.gene050111:CDS |
| CTTGAAAAGACAAGGAGATA+AGG | 0.519768 | 4.4:-17078223 | None:intergenic |
| AGTATACAGAGATCAACATA+AGG | 0.521972 | 4.4:-17079390 | None:intergenic |
| GTATACAGAGATCAACATAA+GGG | 0.524262 | 4.4:-17079389 | None:intergenic |
| CGATTGTTTCCATTTGGCAG+GGG | 0.535880 | 4.4:+17076706 | MS.gene050111:CDS |
| CCTTCCTACTCAGAAAACTT+GGG | 0.538732 | 4.4:+17076794 | MS.gene050111:CDS |
| TCATATTTACCTGTCCAAGA+TGG | 0.540706 | 4.4:-17075838 | None:intergenic |
| ACGATTGTTTCCATTTGGCA+GGG | 0.544994 | 4.4:+17076705 | MS.gene050111:CDS |
| CTTTGTTGCAGCACAAACCC+CGG | 0.552369 | 4.4:+17078368 | MS.gene050111:CDS |
| TCAAGGCTTGGAAGAATCCA+CGG | 0.552385 | 4.4:+17078241 | MS.gene050111:CDS |
| GATTGTTTCCATTTGGCAGG+GGG | 0.570965 | 4.4:+17076707 | MS.gene050111:CDS |
| AATTTGGGGCCCAGTATGCA+TGG | 0.572693 | 4.4:-17076735 | None:intergenic |
| GGAAGAATCCACGGCCACAA+AGG | 0.577318 | 4.4:+17078250 | MS.gene050111:CDS |
| TGCCAAATGGAAACAATCGT+TGG | 0.579040 | 4.4:-17076702 | None:intergenic |
| AGTCGACTCTTGATTATGGG+AGG | 0.581077 | 4.4:+17075772 | None:intergenic |
| GTAGTTTAAGTGCGGATGTG+AGG | 0.581167 | 4.4:+17079248 | MS.gene050111:CDS |
| TCTTGTGCCTCAAAGAGTAG+TGG | 0.581614 | 4.4:-17079085 | None:intergenic |
| TTCCAAGCCTTGAAAAGACA+AGG | 0.583599 | 4.4:-17078231 | None:intergenic |
| ACCATTATAAATGTCACGGA+TGG | 0.588372 | 4.4:-17078192 | None:intergenic |
| ATTGAGAAGATATATCTGGT+TGG | 0.589564 | 4.4:+17079295 | MS.gene050111:CDS |
| CCTGCAGTGAATGAAGCTGC+TGG | 0.597285 | 4.4:-17076832 | None:intergenic |
| CAGAACCATTATAAATGTCA+CGG | 0.604638 | 4.4:-17078196 | None:intergenic |
| TGGGTGGCATGTGCATGAGA+AGG | 0.606139 | 4.4:+17078317 | MS.gene050111:CDS |
| ATCTAAAGGTAGTTTAAGTG+CGG | 0.614446 | 4.4:+17079240 | MS.gene050111:CDS |
| TTCTATATCATGTCAGACAA+AGG | 0.623344 | 4.4:+17076766 | MS.gene050111:CDS |
| AGCTTATCACCCAAAAGCAG+AGG | 0.625011 | 4.4:-17079355 | None:intergenic |
| CAGCAGCTTCATTCACTGCA+GGG | 0.642240 | 4.4:+17076833 | MS.gene050111:CDS |
| CCGAGGTAGAACACTAAAAG+GGG | 0.647722 | 4.4:-17076872 | None:intergenic |
| CTTGTAGTTGTAGAGATATG+GGG | 0.647851 | 4.4:+17079319 | MS.gene050111:CDS |
| ATATCATATGCGTATACCTG+TGG | 0.657422 | 4.4:+17078285 | MS.gene050111:CDS |
| AGGTAGAACACTAAAAGGGG+AGG | 0.659639 | 4.4:-17076869 | None:intergenic |
| TATACAGAGATCAACATAAG+GGG | 0.666217 | 4.4:-17079388 | None:intergenic |
| GCTTATCACCCAAAAGCAGA+GGG | 0.668480 | 4.4:-17079354 | None:intergenic |
| TGTGCTGCAACAAAGGCGAG+TGG | 0.681218 | 4.4:-17078360 | None:intergenic |
| TGTTGCAGCACAAACCCCGG+AGG | 0.712015 | 4.4:+17078371 | MS.gene050111:CDS |
| TCTCTGTATACTGTGCTCTG+GGG | 0.735758 | 4.4:+17079401 | MS.gene050111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAGTTTAATAGAAAAA+TGG | - | chr4.4:17078672-17078691 | None:intergenic | 10.0% |
| !!! | AGATTCTTATTTTTATTTTT+GGG | + | chr4.4:17078635-17078654 | MS.gene050111:intron | 10.0% |
| !!! | TAGATTCTTATTTTTATTTT+TGG | + | chr4.4:17078634-17078653 | MS.gene050111:intron | 10.0% |
| !!! | TTTATTTTAATAATTGGTTA+TGG | - | chr4.4:17078581-17078600 | None:intergenic | 10.0% |
| !!! | TTTTTCTATTAAACTTTTAT+CGG | + | chr4.4:17078672-17078691 | MS.gene050111:intron | 10.0% |
| !! | CCAATTATTAAAATAAAGTT+TGG | + | chr4.4:17078584-17078603 | MS.gene050111:intron | 15.0% |
| !! | CTTCTTCAAAAAAAAAAAAT+AGG | + | chr4.4:17077735-17077754 | MS.gene050111:intron | 15.0% |
| !! | GATAATAACTTAAAATTAGT+TGG | + | chr4.4:17078850-17078869 | MS.gene050111:intron | 15.0% |
| !! | GTGAAATATTATGTTATAAT+AGG | + | chr4.4:17077595-17077614 | MS.gene050111:intron | 15.0% |
| !! | GTGAAATATTATGTTATAAT+TGG | + | chr4.4:17077595-17077614 | MS.gene050111:intron | 15.0% |
| !! | TCATCATAACAAATATTTAT+CGG | - | chr4.4:17078972-17078991 | None:intergenic | 15.0% |
| !!! | ACTAATTTTAAGTTATTATC+AGG | - | chr4.4:17078850-17078869 | None:intergenic | 15.0% |
| !!! | ATATTTCTATTCTTAGAAAA+TGG | - | chr4.4:17077199-17077218 | None:intergenic | 15.0% |
| !!! | CCAAACTTTATTTTAATAAT+TGG | - | chr4.4:17078587-17078606 | None:intergenic | 15.0% |
| !!! | TATTTCTATTCTTAGAAAAT+GGG | - | chr4.4:17077198-17077217 | None:intergenic | 15.0% |
| !!! | TTTATCAATGTTTCTATTTT+TGG | - | chr4.4:17077446-17077465 | None:intergenic | 15.0% |
| !!! | TTTTACATTTTACACATTTT+TGG | + | chr4.4:17077780-17077799 | MS.gene050111:intron | 15.0% |
| !! | AATATAAATGTTCAAATGAC+AGG | + | chr4.4:17077520-17077539 | MS.gene050111:intron | 20.0% |
| !! | ATCACTTTAATAAGATCATA+AGG | - | chr4.4:17078735-17078754 | None:intergenic | 20.0% |
| !! | GAAGAAAAAGATAACATTAT+AGG | - | chr4.4:17078461-17078480 | None:intergenic | 20.0% |
| !! | TTGTTAATTGCTAAATAGAA+AGG | + | chr4.4:17076935-17076954 | MS.gene050111:intron | 20.0% |
| !!! | ATTTTCGACAAAATTATCAA+TGG | - | chr4.4:17078553-17078572 | None:intergenic | 20.0% |
| !!! | CTCATAAGGTTATTTAATTT+AGG | - | chr4.4:17076445-17076464 | None:intergenic | 20.0% |
| !!! | CTTTAACTTGACAATTTTTA+TGG | + | chr4.4:17078609-17078628 | MS.gene050111:intron | 20.0% |
| !!! | TTAATTTAGGTTTGTTGTTA+TGG | - | chr4.4:17076432-17076451 | None:intergenic | 20.0% |
| !!! | TTTTCGACAAAATTATCAAT+GGG | - | chr4.4:17078552-17078571 | None:intergenic | 20.0% |
| ! | AAAATTCAATCTGTATGACT+TGG | - | chr4.4:17077130-17077149 | None:intergenic | 25.0% |
| ! | AACTACCTTTAGATTCAAAT+TGG | - | chr4.4:17079234-17079253 | None:intergenic | 25.0% |
| ! | AATAAGATCATAAGGAAAGA+TGG | - | chr4.4:17078727-17078746 | None:intergenic | 25.0% |
| ! | AATACAAGAATCTAACAAGA+AGG | - | chr4.4:17076582-17076601 | None:intergenic | 25.0% |
| ! | AATGGGAATAAGAAAGTTTA+GGG | - | chr4.4:17078535-17078554 | None:intergenic | 25.0% |
| ! | ATACAAGAATCTAACAAGAA+GGG | - | chr4.4:17076581-17076600 | None:intergenic | 25.0% |
| ! | ATATAGAACACCCAAAAATT+TGG | - | chr4.4:17076754-17076773 | None:intergenic | 25.0% |
| ! | CATTCGTGAAACATTATAAT+TGG | + | chr4.4:17077298-17077317 | MS.gene050111:intron | 25.0% |
| ! | TAGTGCAAGAATTTAGAAAT+GGG | - | chr4.4:17075919-17075938 | None:intergenic | 25.0% |
| ! | TATAGAACACCCAAAAATTT+GGG | - | chr4.4:17076753-17076772 | None:intergenic | 25.0% |
| ! | TCAAGCATAATAAACGATTA+AGG | + | chr4.4:17078915-17078934 | MS.gene050111:intron | 25.0% |
| ! | TCCTATTTATACTTGAAATC+AGG | - | chr4.4:17076223-17076242 | None:intergenic | 25.0% |
| ! | TTAGTGCAAGAATTTAGAAA+TGG | - | chr4.4:17075920-17075939 | None:intergenic | 25.0% |
| !! | ACCTGATTTCAAGTATAAAT+AGG | + | chr4.4:17076219-17076238 | MS.gene050111:intron | 25.0% |
| !! | ATTCTATTCTTTTGCAAGAA+GGG | - | chr4.4:17077007-17077026 | None:intergenic | 25.0% |
| !! | TATTCTATTCTTTTGCAAGA+AGG | - | chr4.4:17077008-17077027 | None:intergenic | 25.0% |
| !! | TGAAAAGTATAATTGCTTCT+TGG | - | chr4.4:17078945-17078964 | None:intergenic | 25.0% |
| !! | TGATAATTTTGTCGAAAATG+AGG | + | chr4.4:17078554-17078573 | MS.gene050111:intron | 25.0% |
| !! | TGTCATGCAATAATTTTATC+TGG | - | chr4.4:17076476-17076495 | None:intergenic | 25.0% |
| !!! | AGGAATAATGGTTTTGTTAT+TGG | + | chr4.4:17079268-17079287 | MS.gene050111:CDS | 25.0% |
| !!! | CATTACTTTTTGTTGTCAAT+AGG | + | chr4.4:17078402-17078421 | MS.gene050111:CDS | 25.0% |
| AACGTCAATTGAAAAGATCT+CGG | - | chr4.4:17078056-17078075 | None:intergenic | 30.0% | |
| AATCCCTATGTGAAATGATA+TGG | + | chr4.4:17076089-17076108 | MS.gene050111:intron | 30.0% | |
| AGTATACAGAGATCAACATA+AGG | - | chr4.4:17079393-17079412 | None:intergenic | 30.0% | |
| AGTGCAAGAATTTAGAAATG+GGG | - | chr4.4:17075918-17075937 | None:intergenic | 30.0% | |
| ATAGAACACCCAAAAATTTG+GGG | - | chr4.4:17076752-17076771 | None:intergenic | 30.0% | |
| ATCGGATGATTCTTATTACT+TGG | + | chr4.4:17078690-17078709 | MS.gene050111:intron | 30.0% | |
| ATCTAAAGGTAGTTTAAGTG+CGG | + | chr4.4:17079240-17079259 | MS.gene050111:CDS | 30.0% | |
| ATCTGGATACATAACTCATA+AGG | - | chr4.4:17076459-17076478 | None:intergenic | 30.0% | |
| ATGATGAGTGAGAATGTTTA+TGG | + | chr4.4:17078985-17079004 | MS.gene050111:intron | 30.0% | |
| ATTAAAGTGATCTTCACACA+AGG | + | chr4.4:17078744-17078763 | MS.gene050111:intron | 30.0% | |
| ATTGAGAAGATATATCTGGT+TGG | + | chr4.4:17079295-17079314 | MS.gene050111:CDS | 30.0% | |
| CAATGGGAATAAGAAAGTTT+AGG | - | chr4.4:17078536-17078555 | None:intergenic | 30.0% | |
| CAGAACCATTATAAATGTCA+CGG | - | chr4.4:17078199-17078218 | None:intergenic | 30.0% | |
| CCAAAAAAATCAATTATGCG+AGG | - | chr4.4:17076645-17076664 | None:intergenic | 30.0% | |
| CGAAGATATGAAAGTTGTTT+GGG | + | chr4.4:17076374-17076393 | MS.gene050111:intron | 30.0% | |
| CTACCATATCATTTCACATA+GGG | - | chr4.4:17076095-17076114 | None:intergenic | 30.0% | |
| CTTGATTGAGAAGATATATC+TGG | + | chr4.4:17079291-17079310 | MS.gene050111:CDS | 30.0% | |
| GAAGATATGAAAGTTGTTTG+GGG | + | chr4.4:17076375-17076394 | MS.gene050111:intron | 30.0% | |
| GATATGGTAGATGAATGTTA+AGG | + | chr4.4:17076105-17076124 | MS.gene050111:intron | 30.0% | |
| GTATACAGAGATCAACATAA+GGG | - | chr4.4:17079392-17079411 | None:intergenic | 30.0% | |
| TATAACATCTCGATCTTGTT+GGG | - | chr4.4:17077500-17077519 | None:intergenic | 30.0% | |
| TATACAGAGATCAACATAAG+GGG | - | chr4.4:17079391-17079410 | None:intergenic | 30.0% | |
| TATTCTTAGAAAATGGGATG+AGG | - | chr4.4:17077192-17077211 | None:intergenic | 30.0% | |
| TCGAAGATATGAAAGTTGTT+TGG | + | chr4.4:17076373-17076392 | MS.gene050111:intron | 30.0% | |
| TCGTGAAACATTATAATTGG+TGG | + | chr4.4:17077301-17077320 | MS.gene050111:intron | 30.0% | |
| TCTACCATATCATTTCACAT+AGG | - | chr4.4:17076096-17076115 | None:intergenic | 30.0% | |
| TCTTGTAGTTGTAGAGATAT+GGG | + | chr4.4:17079318-17079337 | MS.gene050111:CDS | 30.0% | |
| TTAAAGTGATCTTCACACAA+GGG | + | chr4.4:17078745-17078764 | MS.gene050111:intron | 30.0% | |
| TTATAACATCTCGATCTTGT+TGG | - | chr4.4:17077501-17077520 | None:intergenic | 30.0% | |
| TTCTATATCATGTCAGACAA+AGG | + | chr4.4:17076766-17076785 | MS.gene050111:CDS | 30.0% | |
| TTTATACTTGAAATCAGGTC+AGG | - | chr4.4:17076218-17076237 | None:intergenic | 30.0% | |
| ! | AAAGGAAAAAAAAGCACACA+AGG | + | chr4.4:17076953-17076972 | MS.gene050111:intron | 30.0% |
| ! | AAGGAAAAAAAAGCACACAA+GGG | + | chr4.4:17076954-17076973 | MS.gene050111:intron | 30.0% |
| ! | ATACCTGTGGTTTTCTTTTT+GGG | + | chr4.4:17078298-17078317 | MS.gene050111:CDS | 30.0% |
| ! | CTTCCTGAAAAAAGTTTTAC+AGG | + | chr4.4:17075951-17075970 | MS.gene050111:intron | 30.0% |
| ! | TAGTTACTGAGCTTGATTTT+TGG | + | chr4.4:17077407-17077426 | MS.gene050111:intron | 30.0% |
| ! | TATACCTGTGGTTTTCTTTT+TGG | + | chr4.4:17078297-17078316 | MS.gene050111:CDS | 30.0% |
| ! | TTCTATTCTTTTGCAAGAAG+GGG | - | chr4.4:17077006-17077025 | None:intergenic | 30.0% |
| !! | AGCAACAACAGAATTTTGAT+AGG | - | chr4.4:17079115-17079134 | None:intergenic | 30.0% |
| !! | TCTTCGAACATTTATTTCTG+TGG | - | chr4.4:17076360-17076379 | None:intergenic | 30.0% |
| !!! | ACTCCTGTAAAACTTTTTTC+AGG | - | chr4.4:17075957-17075976 | None:intergenic | 30.0% |
| !!! | CATATTTTGATGTTGAACTG+TGG | - | chr4.4:17077277-17077296 | None:intergenic | 30.0% |
| !!! | CCTCGCATAATTGATTTTTT+TGG | + | chr4.4:17076642-17076661 | MS.gene050111:intron | 30.0% |
| !!! | TATTTTGAGTTACCAACTCT+CGG | - | chr4.4:17077253-17077272 | None:intergenic | 30.0% |
| AAACAAGGGAGAAAATGGTA+TGG | - | chr4.4:17076000-17076019 | None:intergenic | 35.0% | |
| ACCATTATAAATGTCACGGA+TGG | - | chr4.4:17078195-17078214 | None:intergenic | 35.0% | |
| AGTTACATCATGACACTCTA+TGG | + | chr4.4:17076135-17076154 | MS.gene050111:intron | 35.0% | |
| ATAACATCTCGATCTTGTTG+GGG | - | chr4.4:17077499-17077518 | None:intergenic | 35.0% | |
| ATATCATATGCGTATACCTG+TGG | + | chr4.4:17078285-17078304 | MS.gene050111:CDS | 35.0% | |
| ATCACTTCTTAACATAAGCC+TGG | - | chr4.4:17077572-17077591 | None:intergenic | 35.0% | |
| ATCCAACGATTGTTTCCATT+TGG | + | chr4.4:17076700-17076719 | MS.gene050111:CDS | 35.0% | |
| ATCCATCTAGTAATCCTTTG+TGG | - | chr4.4:17078267-17078286 | None:intergenic | 35.0% | |
| CTTGAAAAGACAAGGAGATA+AGG | - | chr4.4:17078226-17078245 | None:intergenic | 35.0% | |
| CTTGTAGTTGTAGAGATATG+GGG | + | chr4.4:17079319-17079338 | MS.gene050111:CDS | 35.0% | |
| GACGTCAATTGAATAGATCT+CGG | - | chr4.4:17077822-17077841 | None:intergenic | 35.0% | |
| GGGGAAACAACATCAAATAT+GGG | - | chr4.4:17075898-17075917 | None:intergenic | 35.0% | |
| GTCTTGTAGTTGTAGAGATA+TGG | + | chr4.4:17079317-17079336 | MS.gene050111:CDS | 35.0% | |
| GTGCAAGAATTTAGAAATGG+GGG | - | chr4.4:17075917-17075936 | None:intergenic | 35.0% | |
| GTTACATCATGACACTCTAT+GGG | + | chr4.4:17076136-17076155 | MS.gene050111:intron | 35.0% | |
| TAGTGGAAAAAGAGAATAGC+AGG | - | chr4.4:17079071-17079090 | None:intergenic | 35.0% | |
| TCATATTTACCTGTCCAAGA+TGG | - | chr4.4:17075841-17075860 | None:intergenic | 35.0% | |
| TCCATCCGTGACATTTATAA+TGG | + | chr4.4:17078191-17078210 | MS.gene050111:CDS | 35.0% | |
| TGTAATGTCTGAGTTTGAGT+TGG | + | chr4.4:17078809-17078828 | MS.gene050111:intron | 35.0% | |
| ! | AAAGCAGAGGGTGTAAAAAT+TGG | - | chr4.4:17079345-17079364 | None:intergenic | 35.0% |
| ! | AAGTAATGTTTTGCATCCTC+CGG | - | chr4.4:17078390-17078409 | None:intergenic | 35.0% |
| ! | AAGTTCAGCAGTTTTCACTA+AGG | + | chr4.4:17076290-17076309 | MS.gene050111:intron | 35.0% |
| ! | AGAACTTGGTAGCTCAAAAT+GGG | + | chr4.4:17077544-17077563 | MS.gene050111:intron | 35.0% |
| ! | ATTTTTACACCCTCTGCTTT+TGG | + | chr4.4:17079345-17079364 | MS.gene050111:CDS | 35.0% |
| ! | CTTATCTCCTTGTCTTTTCA+AGG | + | chr4.4:17078224-17078243 | MS.gene050111:CDS | 35.0% |
| ! | GCGTGCTTTTCATTAGTATT+AGG | + | chr4.4:17077052-17077071 | MS.gene050111:intron | 35.0% |
| ! | GCTTTTTGTCATTCAAGTAC+AGG | + | chr4.4:17077893-17077912 | MS.gene050111:intron | 35.0% |
| ! | GTATTGATGTCTTGTGAAGA+GGG | + | chr4.4:17078767-17078786 | MS.gene050111:intron | 35.0% |
| ! | TAAACCCAAGTTTTCTGAGT+AGG | - | chr4.4:17076801-17076820 | None:intergenic | 35.0% |
| ! | TCTTTTTCCACTACTCTTTG+AGG | + | chr4.4:17079078-17079097 | MS.gene050111:CDS | 35.0% |
| ! | TGAAAAGCACGCAGTAAATA+AGG | - | chr4.4:17077044-17077063 | None:intergenic | 35.0% |
| !! | TTCTTCACTCCATTTTGATG+TGG | + | chr4.4:17079134-17079153 | MS.gene050111:CDS | 35.0% |
| !! | TTTTTACACCCTCTGCTTTT+GGG | + | chr4.4:17079346-17079365 | MS.gene050111:CDS | 35.0% |
| AAAGCCAGACCACATCAAAA+TGG | - | chr4.4:17079146-17079165 | None:intergenic | 40.0% | |
| AACGATTGTTTCCATTTGGC+AGG | + | chr4.4:17076704-17076723 | MS.gene050111:CDS | 40.0% | |
| AAGGTCTCTTGTGAATGTGT+GGG | + | chr4.4:17076309-17076328 | MS.gene050111:intron | 40.0% | |
| ACCCGATATCCACAAAACAA+GGG | - | chr4.4:17076014-17076033 | None:intergenic | 40.0% | |
| ACGATTGTTTCCATTTGGCA+GGG | + | chr4.4:17076705-17076724 | MS.gene050111:CDS | 40.0% | |
| AGGCGAGTGGAATTACAAAA+TGG | - | chr4.4:17078350-17078369 | None:intergenic | 40.0% | |
| AGGTAGTAGAAAACCCACTT+GGG | + | chr4.4:17077615-17077634 | MS.gene050111:intron | 40.0% | |
| ATCTCTGTATACTGTGCTCT+GGG | + | chr4.4:17079400-17079419 | MS.gene050111:CDS | 40.0% | |
| ATTCAAGTACAGGCAGAACT+TGG | + | chr4.4:17077903-17077922 | MS.gene050111:intron | 40.0% | |
| CAAAGTCGGTAGTTGACAAT+TGG | - | chr4.4:17076528-17076547 | None:intergenic | 40.0% | |
| CAATTGAACAGCAACATCTC+AGG | - | chr4.4:17077383-17077402 | None:intergenic | 40.0% | |
| CATGACACTCTATGGGAATA+AGG | + | chr4.4:17076143-17076162 | MS.gene050111:intron | 40.0% | |
| CATTAACCAGTCATCAAGCT+CGG | - | chr4.4:17077850-17077869 | None:intergenic | 40.0% | |
| CCACAAAACAAGGGAGAAAA+TGG | - | chr4.4:17076005-17076024 | None:intergenic | 40.0% | |
| CCTGTCCAAGATGGAAAAAA+CGG | - | chr4.4:17075832-17075851 | None:intergenic | 40.0% | |
| CCTTCCTACTCAGAAAACTT+GGG | + | chr4.4:17076794-17076813 | MS.gene050111:CDS | 40.0% | |
| GCTCACACAAAGAAAAAAGC+TGG | + | chr4.4:17079208-17079227 | MS.gene050111:CDS | 40.0% | |
| GCTGGCCAATTTGAATCTAA+AGG | + | chr4.4:17079226-17079245 | MS.gene050111:CDS | 40.0% | |
| GGATCATGTACTCTTGGATA+TGG | + | chr4.4:17079422-17079441 | MS.gene050111:CDS | 40.0% | |
| GGGGGAAACAACATCAAATA+TGG | - | chr4.4:17075899-17075918 | None:intergenic | 40.0% | |
| TAAGGTCTCTTGTGAATGTG+TGG | + | chr4.4:17076308-17076327 | MS.gene050111:intron | 40.0% | |
| TACCCGATATCCACAAAACA+AGG | - | chr4.4:17076015-17076034 | None:intergenic | 40.0% | |
| TAGGTAGTAGAAAACCCACT+TGG | + | chr4.4:17077614-17077633 | MS.gene050111:intron | 40.0% | |
| TGAAAACTGCTGAACTTGCA+GGG | - | chr4.4:17076287-17076306 | None:intergenic | 40.0% | |
| TGCCAAATGGAAACAATCGT+TGG | - | chr4.4:17076705-17076724 | None:intergenic | 40.0% | |
| TTCAAATGACAGGCAGAACT+TGG | + | chr4.4:17077530-17077549 | MS.gene050111:intron | 40.0% | |
| TTCCAAGCCTTGAAAAGACA+AGG | - | chr4.4:17078234-17078253 | None:intergenic | 40.0% | |
| TTTGTGGATATCGGGTATGT+CGG | + | chr4.4:17076018-17076037 | MS.gene050111:intron | 40.0% | |
| ! | AGTAATGTTTTGCATCCTCC+GGG | - | chr4.4:17078389-17078408 | None:intergenic | 40.0% |
| ! | ATACTGGGCCCCAAATTTTT+GGG | + | chr4.4:17076741-17076760 | MS.gene050111:CDS | 40.0% |
| ! | ATTCTCACCGGTGTCAATTT+AGG | + | chr4.4:17077699-17077718 | MS.gene050111:intron | 40.0% |
| ! | CAGAACTTGGTAGCTCAAAA+TGG | + | chr4.4:17077543-17077562 | MS.gene050111:intron | 40.0% |
| ! | TCTACCTCGGGTAAGTTTTA+CGG | + | chr4.4:17076885-17076904 | MS.gene050111:intron | 40.0% |
| ! | TTCAGCACAGTTTTACGACA+GGG | + | chr4.4:17079165-17079184 | MS.gene050111:CDS | 40.0% |
| ! | TTTCAGCACAGTTTTACGAC+AGG | + | chr4.4:17079164-17079183 | MS.gene050111:CDS | 40.0% |
| !! | CAATCTGTATGACTTGGTCA+TGG | - | chr4.4:17077124-17077143 | None:intergenic | 40.0% |
| !! | GGTATTGATGTCTTGTGAAG+AGG | + | chr4.4:17078766-17078785 | MS.gene050111:intron | 40.0% |
| !!! | CCATTTTCTCCCTTGTTTTG+TGG | + | chr4.4:17076002-17076021 | MS.gene050111:intron | 40.0% |
| !!! | CTCCCTTGTTTTGTGGATAT+CGG | + | chr4.4:17076009-17076028 | MS.gene050111:intron | 40.0% |
| !!! | TCCCTTGTTTTGTGGATATC+GGG | + | chr4.4:17076010-17076029 | MS.gene050111:intron | 40.0% |
| ACCCGAGGTAGAACACTAAA+AGG | - | chr4.4:17076877-17076896 | None:intergenic | 45.0% | |
| AGCTTATCACCCAAAAGCAG+AGG | - | chr4.4:17079358-17079377 | None:intergenic | 45.0% | |
| AGGTAGAACACTAAAAGGGG+AGG | - | chr4.4:17076872-17076891 | None:intergenic | 45.0% | |
| AGTAGAAAACCCACTTGGGT+TGG | + | chr4.4:17077619-17077638 | MS.gene050111:intron | 45.0% | |
| AGTGCGGATGTGAGGAATAA+TGG | + | chr4.4:17079256-17079275 | MS.gene050111:CDS | 45.0% | |
| ATCTTGCTCATCAGAGCATG+TGG | - | chr4.4:17076054-17076073 | None:intergenic | 45.0% | |
| ATGACCGTAAAACTTACCCG+AGG | - | chr4.4:17076892-17076911 | None:intergenic | 45.0% | |
| CAGTGTTTGCATCCGCATTT+GGG | + | chr4.4:17075806-17075825 | MS.gene050111:CDS | 45.0% | |
| CCACCCAAAAAGAAAACCAC+AGG | - | chr4.4:17078304-17078323 | None:intergenic | 45.0% | |
| CCCGAGGTAGAACACTAAAA+GGG | - | chr4.4:17076876-17076895 | None:intergenic | 45.0% | |
| CCGAGGTAGAACACTAAAAG+GGG | - | chr4.4:17076875-17076894 | None:intergenic | 45.0% | |
| CGATTGTTTCCATTTGGCAG+GGG | + | chr4.4:17076706-17076725 | MS.gene050111:CDS | 45.0% | |
| GATCTCTGTATACTGTGCTC+TGG | + | chr4.4:17079399-17079418 | MS.gene050111:CDS | 45.0% | |
| GATTGTTTCCATTTGGCAGG+GGG | + | chr4.4:17076707-17076726 | MS.gene050111:CDS | 45.0% | |
| GCCTTCCTACTCAGAAAACT+TGG | + | chr4.4:17076793-17076812 | MS.gene050111:CDS | 45.0% | |
| GCTTATCACCCAAAAGCAGA+GGG | - | chr4.4:17079357-17079376 | None:intergenic | 45.0% | |
| GGCCACAAAGGATTACTAGA+TGG | + | chr4.4:17078262-17078281 | MS.gene050111:CDS | 45.0% | |
| GTAGTTTAAGTGCGGATGTG+AGG | + | chr4.4:17079248-17079267 | MS.gene050111:CDS | 45.0% | |
| GTGAAAACTGCTGAACTTGC+AGG | - | chr4.4:17076288-17076307 | None:intergenic | 45.0% | |
| TAGCGCACCTAAATTGACAC+CGG | - | chr4.4:17077709-17077728 | None:intergenic | 45.0% | |
| TCAAGGCTTGGAAGAATCCA+CGG | + | chr4.4:17078241-17078260 | MS.gene050111:CDS | 45.0% | |
| TCTCTGTATACTGTGCTCTG+GGG | + | chr4.4:17079401-17079420 | MS.gene050111:CDS | 45.0% | |
| TCTTGTGCCTCAAAGAGTAG+TGG | - | chr4.4:17079088-17079107 | None:intergenic | 45.0% | |
| TGGAAAAAACGGCCCAAATG+CGG | - | chr4.4:17075821-17075840 | None:intergenic | 45.0% | |
| ! | CATACTGGGCCCCAAATTTT+TGG | + | chr4.4:17076740-17076759 | MS.gene050111:CDS | 45.0% |
| ! | CCCAAGTTTTCTGAGTAGGA+AGG | - | chr4.4:17076797-17076816 | None:intergenic | 45.0% |
| ! | CCCCTTTTAGTGTTCTACCT+CGG | + | chr4.4:17076872-17076891 | MS.gene050111:CDS | 45.0% |
| ! | CCCTTTTAGTGTTCTACCTC+GGG | + | chr4.4:17076873-17076892 | MS.gene050111:CDS | 45.0% |
| ! | GTAATGTTTTGCATCCTCCG+GGG | - | chr4.4:17078388-17078407 | None:intergenic | 45.0% |
| ! | TCGCAACTGAGCTTGATAAC+TGG | + | chr4.4:17078075-17078094 | MS.gene050111:intron | 45.0% |
| !! | CACTCCATTTTGATGTGGTC+TGG | + | chr4.4:17079139-17079158 | MS.gene050111:CDS | 45.0% |
| !! | CCTGTGGTTTTCTTTTTGGG+TGG | + | chr4.4:17078301-17078320 | MS.gene050111:CDS | 45.0% |
| !! | CTCCTTGTCTTTTCAAGGCT+TGG | + | chr4.4:17078229-17078248 | MS.gene050111:CDS | 45.0% |
| !!! | CCGTTTTTTCCATCTTGGAC+AGG | + | chr4.4:17075829-17075848 | MS.gene050111:CDS | 45.0% |
| !!! | TTGGGCCGTTTTTTCCATCT+TGG | + | chr4.4:17075824-17075843 | MS.gene050111:CDS | 45.0% |
| ATCTCGGAAGTCACAACAGC+TGG | - | chr4.4:17078040-17078059 | None:intergenic | 50.0% | |
| ATCTCGGAAGTTGCAACAGC+TGG | - | chr4.4:17077806-17077825 | None:intergenic | 50.0% | |
| CAGCAGCTTCATTCACTGCA+GGG | + | chr4.4:17076833-17076852 | MS.gene050111:CDS | 50.0% | |
| CGCACATGAGCATGCAAAGT+CGG | - | chr4.4:17076542-17076561 | None:intergenic | 50.0% | |
| CTAGTAATCCTTTGTGGCCG+TGG | - | chr4.4:17078261-17078280 | None:intergenic | 50.0% | |
| CTTTGTTGCAGCACAAACCC+CGG | + | chr4.4:17078368-17078387 | MS.gene050111:CDS | 50.0% | |
| GCAGTGTTTGCATCCGCATT+TGG | + | chr4.4:17075805-17075824 | MS.gene050111:CDS | 50.0% | |
| GGTAGCTCAAAATGAGCACC+AGG | + | chr4.4:17077924-17077943 | MS.gene050111:intron | 50.0% | |
| GTCTCAGGTTCGATTCTCAC+CGG | + | chr4.4:17077687-17077706 | MS.gene050111:intron | 50.0% | |
| TGAATGAAGCTGCTGGTGTC+TGG | - | chr4.4:17076828-17076847 | None:intergenic | 50.0% | |
| TTGCTCATCAGAGCATGTGG+AGG | - | chr4.4:17076051-17076070 | None:intergenic | 50.0% | |
| ! | AATTTGGGGCCCAGTATGCA+TGG | - | chr4.4:17076738-17076757 | None:intergenic | 50.0% |
| ! | CAACATCTCAGGCGTTGCAA+TGG | - | chr4.4:17077372-17077391 | None:intergenic | 50.0% |
| ! | CTCTGGGGATCATGTACTCT+TGG | + | chr4.4:17079416-17079435 | MS.gene050111:CDS | 50.0% |
| ! | TCATTCACTGCAGGGCTAGT+AGG | + | chr4.4:17076841-17076860 | MS.gene050111:CDS | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | + | chr4.4:17077639-17077658 | MS.gene050111:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr4.4:17077638-17077657 | MS.gene050111:intron | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr4.4:17077633-17077652 | MS.gene050111:intron | 50.0% |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr4.4:17077631-17077650 | None:intergenic | 55.0% | |
| CCAGCAGCTTCATTCACTGC+AGG | + | chr4.4:17076832-17076851 | MS.gene050111:CDS | 55.0% | |
| CCTGCAGTGAATGAAGCTGC+TGG | - | chr4.4:17076835-17076854 | None:intergenic | 55.0% | |
| CGGGGTTTGTGCTGCAACAA+AGG | - | chr4.4:17078370-17078389 | None:intergenic | 55.0% | |
| GAATCGAACCTGAGACCTCG+AGG | - | chr4.4:17077683-17077702 | None:intergenic | 55.0% | |
| GGAAGAATCCACGGCCACAA+AGG | + | chr4.4:17078250-17078269 | MS.gene050111:CDS | 55.0% | |
| GGGGCTTTGCCATGCATACT+GGG | + | chr4.4:17076726-17076745 | MS.gene050111:CDS | 55.0% | |
| GGTAGCTCAAAATGGGCACC+AGG | + | chr4.4:17077551-17077570 | MS.gene050111:intron | 55.0% | |
| GGTCCCAAGCCAATACCACT+AGG | - | chr4.4:17077645-17077664 | None:intergenic | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr4.4:17077632-17077651 | None:intergenic | 55.0% | |
| TGGGTGGCATGTGCATGAGA+AGG | + | chr4.4:17078317-17078336 | MS.gene050111:CDS | 55.0% | |
| TGTGCTGCAACAAAGGCGAG+TGG | - | chr4.4:17078363-17078382 | None:intergenic | 55.0% | |
| ! | CTGCAACCGAGCTTGATGAC+TGG | + | chr4.4:17077841-17077860 | MS.gene050111:intron | 55.0% |
| !! | AGTGGTATTGGCTTGGGACC+TGG | + | chr4.4:17077645-17077664 | MS.gene050111:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+GGG | + | chr4.4:17077646-17077665 | MS.gene050111:intron | 55.0% |
| GGGGGCTTTGCCATGCATAC+TGG | + | chr4.4:17076725-17076744 | MS.gene050111:CDS | 60.0% | |
| GTCACATCGCAGCCGAGAGT+TGG | + | chr4.4:17077238-17077257 | MS.gene050111:intron | 60.0% | |
| TCGAACCTGAGACCTCGAGG+AGG | - | chr4.4:17077680-17077699 | None:intergenic | 60.0% | |
| TGGCAAAGCCCCCTGCCAAA+TGG | - | chr4.4:17076718-17076737 | None:intergenic | 60.0% | |
| TGTTGCAGCACAAACCCCGG+AGG | + | chr4.4:17078371-17078390 | MS.gene050111:CDS | 60.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr4.4:17077627-17077646 | MS.gene050111:intron | 60.0% |
| GTGCTCCTCCTCGAGGTCTC+AGG | + | chr4.4:17077672-17077691 | MS.gene050111:intron | 65.0% | |
| ! | TCGAGGAGGAGCACACTCCC+AGG | - | chr4.4:17077666-17077685 | None:intergenic | 65.0% |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | + | chr4.4:17077665-17077684 | MS.gene050111:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17075774 | 17079474 | 17075774 | ID=MS.gene050111 |
| chr4.4 | mRNA | 17075774 | 17079474 | 17075774 | ID=MS.gene050111.t1;Parent=MS.gene050111 |
| chr4.4 | exon | 17075774 | 17075850 | 17075774 | ID=MS.gene050111.t1.exon1;Parent=MS.gene050111.t1 |
| chr4.4 | CDS | 17075774 | 17075850 | 17075774 | ID=cds.MS.gene050111.t1;Parent=MS.gene050111.t1 |
| chr4.4 | exon | 17076698 | 17076894 | 17076698 | ID=MS.gene050111.t1.exon2;Parent=MS.gene050111.t1 |
| chr4.4 | CDS | 17076698 | 17076894 | 17076698 | ID=cds.MS.gene050111.t1;Parent=MS.gene050111.t1 |
| chr4.4 | exon | 17078186 | 17078423 | 17078186 | ID=MS.gene050111.t1.exon3;Parent=MS.gene050111.t1 |
| chr4.4 | CDS | 17078186 | 17078423 | 17078186 | ID=cds.MS.gene050111.t1;Parent=MS.gene050111.t1 |
| chr4.4 | exon | 17079065 | 17079474 | 17079065 | ID=MS.gene050111.t1.exon4;Parent=MS.gene050111.t1 |
| chr4.4 | CDS | 17079065 | 17079474 | 17079065 | ID=cds.MS.gene050111.t1;Parent=MS.gene050111.t1 |
| Gene Sequence |
| Protein sequence |
