Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050816.t1 | ABD32844.1 | 98.8 | 164 | 2 | 0 | 1 | 164 | 436 | 599 | 1.10E-85 | 325.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050816.t1 | G7KVH9 | 98.8 | 164 | 2 | 0 | 1 | 164 | 578 | 741 | 7.9e-86 | 325.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050816 | MS.gene050817 | 0.843062 | 1.77E-58 | -1.69E-46 |
| MS.gene050816 | MS.gene26731 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene050816 | MS.gene28610 | 0.840316 | 9.36E-58 | -1.69E-46 |
| MS.gene050816 | MS.gene39937 | 0.81321 | 2.87E-51 | -1.69E-46 |
| MS.gene050816 | MS.gene49370 | 0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene050816 | MS.gene50553 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene050816 | MS.gene90121 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene050816 | MS.gene90778 | 0.803143 | 4.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050816.t1 | MTR_7g111080 | 98.780 | 164 | 2 | 0 | 1 | 164 | 578 | 741 | 2.53e-109 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050816.t1 | AT5G24710 | 83.537 | 164 | 26 | 1 | 1 | 164 | 581 | 743 | 7.04e-94 | 296 |
Find 43 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCCCAAGCAGTCCATTC+TGG | 0.264020 | 7.1:-4070017 | None:intergenic |
| ATCCAGTCTATGCCATTATC+AGG | 0.369025 | 7.1:+4068720 | MS.gene050816:CDS |
| AAGATATGACTATGTATTGT+TGG | 0.384764 | 7.1:-4070067 | None:intergenic |
| CTCAAAACTTCCAGCTATAC+AGG | 0.400917 | 7.1:+4068823 | MS.gene050816:CDS |
| CTGCTTCCATAACCTGATAA+TGG | 0.403037 | 7.1:-4068732 | None:intergenic |
| TTGCATGGAGGGGCACTGCT+TGG | 0.403387 | 7.1:+4068639 | MS.gene050816:CDS |
| TCTATGCCATTATCAGGTTA+TGG | 0.412474 | 7.1:+4068726 | MS.gene050816:CDS |
| ATAAATTTCACCTGTATAGC+TGG | 0.418298 | 7.1:-4068833 | None:intergenic |
| GCACCGGAGGCAACTGTTTG+TGG | 0.418498 | 7.1:+4070154 | MS.gene050816:CDS |
| AGGTCATTGGTTTGCATGGA+GGG | 0.419161 | 7.1:+4068628 | MS.gene050816:intron |
| GAAATAGCTGTAGCAGCAAT+AGG | 0.426838 | 7.1:-4068693 | None:intergenic |
| CATATGCGACTAGTGCTGTT+TGG | 0.432824 | 7.1:+4070132 | MS.gene050816:CDS |
| CTCAGCCAGAATGGACTGCT+TGG | 0.443742 | 7.1:+4070012 | MS.gene050816:CDS |
| TGGGAGACATTTCAGCCTGT+GGG | 0.458762 | 7.1:+4069978 | MS.gene050816:CDS |
| AAGCACAATACTCGACGGTT+TGG | 0.466091 | 7.1:-4070037 | None:intergenic |
| TTGGGAGACATTTCAGCCTG+TGG | 0.480746 | 7.1:+4069977 | MS.gene050816:CDS |
| CTCTACTTCCTCAGCCAGAA+TGG | 0.481221 | 7.1:+4070003 | MS.gene050816:CDS |
| CTCCCAGGTATCTATATTGT+GGG | 0.482317 | 7.1:-4070097 | None:intergenic |
| TCAGCCAGAATGGACTGCTT+GGG | 0.494971 | 7.1:+4070013 | MS.gene050816:CDS |
| GGTCATTGGTTTGCATGGAG+GGG | 0.497803 | 7.1:+4068629 | MS.gene050816:intron |
| CAAACAGCACTAGTCGCATA+TGG | 0.507974 | 7.1:-4070131 | None:intergenic |
| GTCCGAATTATGTTGGATGA+TGG | 0.513836 | 7.1:+4067921 | None:intergenic |
| GAACATCAAATATGCTAATG+AGG | 0.519478 | 7.1:+4067943 | MS.gene050816:CDS |
| CGACTAGTGCTGTTTGGCAC+CGG | 0.523385 | 7.1:+4070138 | MS.gene050816:CDS |
| TCTCCCAGGTATCTATATTG+TGG | 0.523820 | 7.1:-4070098 | None:intergenic |
| GATGCTTACTCAATAGTAGT+TGG | 0.524936 | 7.1:-4070182 | None:intergenic |
| GCGCCCACAATATAGATACC+TGG | 0.528122 | 7.1:+4070094 | MS.gene050816:CDS |
| TAGGTCATTGGTTTGCATGG+AGG | 0.530097 | 7.1:+4068627 | MS.gene050816:intron |
| TTGCCACAAACAGTTGCCTC+CGG | 0.540164 | 7.1:-4070157 | None:intergenic |
| AACCTGATAATGGCATAGAC+TGG | 0.543681 | 7.1:-4068722 | None:intergenic |
| GGGAGACATTTCAGCCTGTG+GGG | 0.550620 | 7.1:+4069979 | MS.gene050816:CDS |
| CAAGCAGTCCATTCTGGCTG+AGG | 0.551410 | 7.1:-4070011 | None:intergenic |
| GGAGACATTTCAGCCTGTGG+GGG | 0.556776 | 7.1:+4069980 | MS.gene050816:CDS |
| GATTCTCCTAGATGTTCGAT+AGG | 0.575353 | 7.1:-4068667 | None:intergenic |
| CGCCCACAATATAGATACCT+GGG | 0.576267 | 7.1:+4070095 | MS.gene050816:CDS |
| AAATAGATCTCCAGCTGAGG+CGG | 0.578862 | 7.1:+4068797 | MS.gene050816:CDS |
| CTAGTGCTGTTTGGCACCGG+AGG | 0.583399 | 7.1:+4070141 | MS.gene050816:CDS |
| GTGTTGCCTATCGAACATCT+AGG | 0.592674 | 7.1:+4068661 | MS.gene050816:CDS |
| TTCAAATAGATCTCCAGCTG+AGG | 0.612307 | 7.1:+4068794 | MS.gene050816:CDS |
| ATGGAATTGAAACATCTCCC+AGG | 0.638441 | 7.1:-4070112 | None:intergenic |
| AATATGCTAATGAGGTCTGT+TGG | 0.639966 | 7.1:+4067951 | MS.gene050816:CDS |
| TGCAAAAGCACAATACTCGA+CGG | 0.660840 | 7.1:-4070042 | None:intergenic |
| TTATCAGGTTATGGAAGCAG+CGG | 0.668159 | 7.1:+4068735 | MS.gene050816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTCATTTTTTTAAAAAAA+AGG | + | chr7.1:4069325-4069344 | MS.gene050816:intron | 10.0% |
| !!! | ACTCATTTTTTTAAAAAAAA+GGG | + | chr7.1:4069326-4069345 | MS.gene050816:intron | 10.0% |
| !!! | ATCTATTTATTTTTAAAACA+AGG | + | chr7.1:4069280-4069299 | MS.gene050816:intron | 10.0% |
| !!! | CTTAGATTTTTTTTTTTTTA+AGG | + | chr7.1:4068441-4068460 | MS.gene050816:intron | 10.0% |
| !! | AAAAAAATCTTAAACAAACA+GGG | - | chr7.1:4069140-4069159 | None:intergenic | 15.0% |
| !! | AAAGTTTATCATAATAATCT+AGG | + | chr7.1:4068025-4068044 | MS.gene050816:intron | 15.0% |
| !!! | TAAAAAAAAGGGATTTTAAT+GGG | + | chr7.1:4069337-4069356 | MS.gene050816:intron | 15.0% |
| !!! | TATTTATTTTTAAAACAAGG+AGG | + | chr7.1:4069283-4069302 | MS.gene050816:intron | 15.0% |
| !!! | TCTGCAATATTTATATATTT+TGG | + | chr7.1:4069096-4069115 | MS.gene050816:intron | 15.0% |
| !!! | TTAAAAAAAAGGGATTTTAA+TGG | + | chr7.1:4069336-4069355 | MS.gene050816:intron | 15.0% |
| !! | AAATGCAATGTCAAATTAAA+AGG | - | chr7.1:4069938-4069957 | None:intergenic | 20.0% |
| !! | AACAAAGATTAAAGTAATAC+TGG | - | chr7.1:4069884-4069903 | None:intergenic | 20.0% |
| !! | ATGAATTTAATGCAAATCAA+GGG | - | chr7.1:4069847-4069866 | None:intergenic | 20.0% |
| !! | CATGTTTCTTAAATGTTATT+AGG | + | chr7.1:4069697-4069716 | MS.gene050816:intron | 20.0% |
| !! | GAAAAAAATCTTAAACAAAC+AGG | - | chr7.1:4069141-4069160 | None:intergenic | 20.0% |
| !! | TATGAATTTAATGCAAATCA+AGG | - | chr7.1:4069848-4069867 | None:intergenic | 20.0% |
| !! | TATTATGATAAACTTTAACG+AGG | - | chr7.1:4068021-4068040 | None:intergenic | 20.0% |
| !!! | AAAAAATGATTTCTAGGTAA+AGG | - | chr7.1:4069498-4069517 | None:intergenic | 20.0% |
| ! | AAAAAAATGACATGTGGTTT+AGG | - | chr7.1:4069798-4069817 | None:intergenic | 25.0% |
| ! | AAGATATGACTATGTATTGT+TGG | - | chr7.1:4070070-4070089 | None:intergenic | 25.0% |
| ! | AATAGAGTACACTATTTAGT+AGG | - | chr7.1:4068174-4068193 | None:intergenic | 25.0% |
| ! | ATATATAAATATTGCAGAGC+AGG | - | chr7.1:4069094-4069113 | None:intergenic | 25.0% |
| ! | CCTTAAAATGAAAAGCTATT+AGG | + | chr7.1:4069241-4069260 | MS.gene050816:intron | 25.0% |
| ! | GTGCTATAGAAATGAATTAT+GGG | + | chr7.1:4068310-4068329 | MS.gene050816:intron | 25.0% |
| ! | TATATAAATATTGCAGAGCA+GGG | - | chr7.1:4069093-4069112 | None:intergenic | 25.0% |
| ! | TTTCTTGTAAAATGTTGTGT+TGG | + | chr7.1:4068367-4068386 | MS.gene050816:intron | 25.0% |
| !! | AGGCAATACTTTATTTACAA+AGG | - | chr7.1:4068924-4068943 | None:intergenic | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+AGG | - | chr7.1:4069244-4069263 | None:intergenic | 25.0% |
| !! | TCTTTTACTACTTATGATGA+TGG | + | chr7.1:4068765-4068784 | MS.gene050816:CDS | 25.0% |
| !!! | AATCTTTGTTAGCTTTAATG+AGG | + | chr7.1:4069894-4069913 | MS.gene050816:intron | 25.0% |
| !!! | ATCTTTGTTAGCTTTAATGA+GGG | + | chr7.1:4069895-4069914 | MS.gene050816:intron | 25.0% |
| !!! | ATTGCATTTTATTTTGTCTG+TGG | + | chr7.1:4069949-4069968 | MS.gene050816:intron | 25.0% |
| !!! | CTGCAAAATTTTAATCTTTG+TGG | + | chr7.1:4068101-4068120 | MS.gene050816:intron | 25.0% |
| !!! | TCATTTTGAAGTGTTTGTTT+TGG | + | chr7.1:4069178-4069197 | MS.gene050816:intron | 25.0% |
| AAACTGAGAAAGAATCTTAC+TGG | - | chr7.1:4067990-4068009 | None:intergenic | 30.0% | |
| AAAGAGAAGTTAGAACAGTT+GGG | - | chr7.1:4069538-4069557 | None:intergenic | 30.0% | |
| AGCTATACAGGTGAAATTTA+TGG | + | chr7.1:4068835-4068854 | MS.gene050816:intron | 30.0% | |
| ATAAATTTCACCTGTATAGC+TGG | - | chr7.1:4068836-4068855 | None:intergenic | 30.0% | |
| CTCTATTCTTAGACTAATCA+TGG | + | chr7.1:4068187-4068206 | MS.gene050816:intron | 30.0% | |
| GAACATCAAATATGCTAATG+AGG | + | chr7.1:4067943-4067962 | MS.gene050816:CDS | 30.0% | |
| GAGCTGAAAAAATGATTTCT+AGG | - | chr7.1:4069504-4069523 | None:intergenic | 30.0% | |
| TAAAGAGAAGTTAGAACAGT+TGG | - | chr7.1:4069539-4069558 | None:intergenic | 30.0% | |
| TAGAATGCTCACATGTATAA+GGG | + | chr7.1:4068953-4068972 | MS.gene050816:intron | 30.0% | |
| TGAGAGAAAAAAATGACATG+TGG | - | chr7.1:4069804-4069823 | None:intergenic | 30.0% | |
| TGAGCATTCTAATCTTAAAG+AGG | - | chr7.1:4068944-4068963 | None:intergenic | 30.0% | |
| TTAGAATGCTCACATGTATA+AGG | + | chr7.1:4068952-4068971 | MS.gene050816:intron | 30.0% | |
| ! | ATACTTTATTTACAAAGGCC+AGG | - | chr7.1:4068919-4068938 | None:intergenic | 30.0% |
| ! | CTTTGAAGAATAACATACAC+AGG | - | chr7.1:4068539-4068558 | None:intergenic | 30.0% |
| ! | GGTGCTATAGAAATGAATTA+TGG | + | chr7.1:4068309-4068328 | MS.gene050816:intron | 30.0% |
| !! | AAAGCCTTGATTGTTATTTG+AGG | - | chr7.1:4069773-4069792 | None:intergenic | 30.0% |
| !! | AAGAGAGTATCTTTGAAAAC+AGG | + | chr7.1:4068556-4068575 | MS.gene050816:intron | 30.0% |
| !! | AAGCCTTGATTGTTATTTGA+GGG | - | chr7.1:4069772-4069791 | None:intergenic | 30.0% |
| !! | TTTGGTTGATAGAAAGACTT+GGG | + | chr7.1:4069114-4069133 | MS.gene050816:intron | 30.0% |
| !!! | TTGATGATTCTGGCTTTTAT+TGG | + | chr7.1:4068050-4068069 | MS.gene050816:intron | 30.0% |
| !!! | TTTTACTCTAGTTTTGGCTT+GGG | + | chr7.1:4068982-4069001 | MS.gene050816:intron | 30.0% |
| !!! | TTTTGGTTGATAGAAAGACT+TGG | + | chr7.1:4069113-4069132 | MS.gene050816:intron | 30.0% |
| AAAAAAAAGAATGCCTCCGA+TGG | - | chr7.1:4069591-4069610 | None:intergenic | 35.0% | |
| AACTATCTTGTGCATGTCTT+GGG | - | chr7.1:4068252-4068271 | None:intergenic | 35.0% | |
| AATATGCTAATGAGGTCTGT+TGG | + | chr7.1:4067951-4067970 | MS.gene050816:CDS | 35.0% | |
| AGCCAAAACTAGAGTAAAAG+TGG | - | chr7.1:4068981-4069000 | None:intergenic | 35.0% | |
| ATGACCTAAAAGAGATACAC+CGG | - | chr7.1:4068615-4068634 | None:intergenic | 35.0% | |
| CTATCTCTGCATAACAGAAA+AGG | - | chr7.1:4069066-4069085 | None:intergenic | 35.0% | |
| CTGTATGAAATTGGCTATAG+TGG | + | chr7.1:4068394-4068413 | MS.gene050816:intron | 35.0% | |
| GAGCGACAATTTGAATGTTA+GGG | + | chr7.1:4068578-4068597 | MS.gene050816:intron | 35.0% | |
| GTTGGACATCTGTATGAAAT+TGG | + | chr7.1:4068385-4068404 | MS.gene050816:intron | 35.0% | |
| TATTTACAAAGGCCAGGTTA+GGG | - | chr7.1:4068913-4068932 | None:intergenic | 35.0% | |
| TCACCCTCAAATAACAATCA+AGG | + | chr7.1:4069766-4069785 | MS.gene050816:intron | 35.0% | |
| TCTATGCCATTATCAGGTTA+TGG | + | chr7.1:4068726-4068745 | MS.gene050816:CDS | 35.0% | |
| TGAAGAATAACATACACAGG+AGG | - | chr7.1:4068536-4068555 | None:intergenic | 35.0% | |
| TTATTTACAAAGGCCAGGTT+AGG | - | chr7.1:4068914-4068933 | None:intergenic | 35.0% | |
| ! | ATTTCTAGGTAAAGGAACTG+GGG | - | chr7.1:4069490-4069509 | None:intergenic | 35.0% |
| ! | ATTTTGTCTGTGGTTCAGTT+GGG | + | chr7.1:4069959-4069978 | MS.gene050816:intron | 35.0% |
| ! | CTTTTCTGTTATGCAGAGAT+AGG | + | chr7.1:4069064-4069083 | MS.gene050816:intron | 35.0% |
| ! | GATTTCTAGGTAAAGGAACT+GGG | - | chr7.1:4069491-4069510 | None:intergenic | 35.0% |
| ! | TATTTTGTCTGTGGTTCAGT+TGG | + | chr7.1:4069958-4069977 | MS.gene050816:intron | 35.0% |
| ! | TCATTTCTATAGCACCGAAT+TGG | - | chr7.1:4068305-4068324 | None:intergenic | 35.0% |
| ! | TGATTTCTAGGTAAAGGAAC+TGG | - | chr7.1:4069492-4069511 | None:intergenic | 35.0% |
| ! | TGCACAAGATAGTTGATGTT+TGG | + | chr7.1:4068258-4068277 | MS.gene050816:intron | 35.0% |
| !! | AAGGGATTTTAATGGGTAGT+AGG | + | chr7.1:4069344-4069363 | MS.gene050816:intron | 35.0% |
| !! | AATCTAGGAGTTGATGATTC+TGG | + | chr7.1:4068040-4068059 | MS.gene050816:intron | 35.0% |
| !! | GTGTATCTCTTTTAGGTCAT+TGG | + | chr7.1:4068615-4068634 | MS.gene050816:intron | 35.0% |
| !! | TTGATTGTTATTTGAGGGTG+AGG | - | chr7.1:4069767-4069786 | None:intergenic | 35.0% |
| !! | TTGTTTTGCAACTGCCAATT+CGG | + | chr7.1:4068288-4068307 | MS.gene050816:intron | 35.0% |
| !!! | CTTTTACTCTAGTTTTGGCT+TGG | + | chr7.1:4068981-4069000 | MS.gene050816:intron | 35.0% |
| !!! | TGCCACTTTTACTCTAGTTT+TGG | + | chr7.1:4068976-4068995 | MS.gene050816:intron | 35.0% |
| !!! | TTTACTCTAGTTTTGGCTTG+GGG | + | chr7.1:4068983-4069002 | MS.gene050816:intron | 35.0% |
| !!! | TTTTAGGTCATTGGTTTGCA+TGG | + | chr7.1:4068624-4068643 | MS.gene050816:intron | 35.0% |
| ACAAACAGATTGACGACTCT+TGG | - | chr7.1:4068490-4068509 | None:intergenic | 40.0% | |
| ATCCAGTCTATGCCATTATC+AGG | + | chr7.1:4068720-4068739 | MS.gene050816:CDS | 40.0% | |
| ATGCAAATCAAGGGTTCAAC+AGG | - | chr7.1:4069838-4069857 | None:intergenic | 40.0% | |
| ATGGAATTGAAACATCTCCC+AGG | - | chr7.1:4070115-4070134 | None:intergenic | 40.0% | |
| CAACTATCTTGTGCATGTCT+TGG | - | chr7.1:4068253-4068272 | None:intergenic | 40.0% | |
| CTCAAAACTTCCAGCTATAC+AGG | + | chr7.1:4068823-4068842 | MS.gene050816:CDS | 40.0% | |
| CTCCCAGGTATCTATATTGT+GGG | - | chr7.1:4070100-4070119 | None:intergenic | 40.0% | |
| CTGCTTCCATAACCTGATAA+TGG | - | chr7.1:4068735-4068754 | None:intergenic | 40.0% | |
| CTTGGGGTAGATTTACGTTT+AGG | + | chr7.1:4068999-4069018 | MS.gene050816:intron | 40.0% | |
| GAAATAGCTGTAGCAGCAAT+AGG | - | chr7.1:4068696-4068715 | None:intergenic | 40.0% | |
| GATTCTCCTAGATGTTCGAT+AGG | - | chr7.1:4068670-4068689 | None:intergenic | 40.0% | |
| GGAGCGACAATTTGAATGTT+AGG | + | chr7.1:4068577-4068596 | MS.gene050816:intron | 40.0% | |
| TCTCCCAGGTATCTATATTG+TGG | - | chr7.1:4070101-4070120 | None:intergenic | 40.0% | |
| TCTTGGCAACAGTATAGAAG+TGG | - | chr7.1:4068473-4068492 | None:intergenic | 40.0% | |
| TGGGGCAACACAAACTATAT+GGG | - | chr7.1:4069472-4069491 | None:intergenic | 40.0% | |
| TTATCAGGTTATGGAAGCAG+CGG | + | chr7.1:4068735-4068754 | MS.gene050816:CDS | 40.0% | |
| TTCAAATAGATCTCCAGCTG+AGG | + | chr7.1:4068794-4068813 | MS.gene050816:CDS | 40.0% | |
| ! | CTGTATAGCTGGAAGTTTTG+AGG | - | chr7.1:4068825-4068844 | None:intergenic | 40.0% |
| ! | TGAACCGGTGTATCTCTTTT+AGG | + | chr7.1:4068608-4068627 | MS.gene050816:intron | 40.0% |
| ! | TGCAAAAGCACAATACTCGA+CGG | - | chr7.1:4070045-4070064 | None:intergenic | 40.0% |
| ! | TTTACGTTTAGGATTCCCTC+TGG | + | chr7.1:4069010-4069029 | MS.gene050816:intron | 40.0% |
| !! | AACCTGATAATGGCATAGAC+TGG | - | chr7.1:4068725-4068744 | None:intergenic | 40.0% |
| !! | AAGAGATACACCGGTTCAAA+AGG | - | chr7.1:4068606-4068625 | None:intergenic | 40.0% |
| !! | ATTGTTATTTGAGGGTGAGG+TGG | - | chr7.1:4069764-4069783 | None:intergenic | 40.0% |
| !! | TGTTAGGGTACCTTTTGAAC+CGG | + | chr7.1:4068593-4068612 | MS.gene050816:intron | 40.0% |
| !!! | GTTTCCTTTTTTCCCTAACC+TGG | + | chr7.1:4068898-4068917 | MS.gene050816:intron | 40.0% |
| AAATAGATCTCCAGCTGAGG+CGG | + | chr7.1:4068797-4068816 | MS.gene050816:CDS | 45.0% | |
| AAGCACAATACTCGACGGTT+TGG | - | chr7.1:4070040-4070059 | None:intergenic | 45.0% | |
| AAGGCCAGGTTAGGGAAAAA+AGG | - | chr7.1:4068905-4068924 | None:intergenic | 45.0% | |
| CAAACAGCACTAGTCGCATA+TGG | - | chr7.1:4070134-4070153 | None:intergenic | 45.0% | |
| CGCCCACAATATAGATACCT+GGG | + | chr7.1:4070095-4070114 | MS.gene050816:CDS | 45.0% | |
| CTGGGGCAACACAAACTATA+TGG | - | chr7.1:4069473-4069492 | None:intergenic | 45.0% | |
| GTGTTGCCTATCGAACATCT+AGG | + | chr7.1:4068661-4068680 | MS.gene050816:CDS | 45.0% | |
| TATGCAAGTGTCTCTCTGCA+AGG | + | chr7.1:4069557-4069576 | MS.gene050816:intron | 45.0% | |
| TGAGTGCAGAAAGTCTTGCA+AGG | - | chr7.1:4069679-4069698 | None:intergenic | 45.0% | |
| TGCCAAACAAAGTGACTGAC+AGG | - | chr7.1:4069723-4069742 | None:intergenic | 45.0% | |
| TGGGATAATTCGCGAGTGAA+AGG | + | chr7.1:4068329-4068348 | MS.gene050816:intron | 45.0% | |
| ! | CATATGCGACTAGTGCTGTT+TGG | + | chr7.1:4070132-4070151 | MS.gene050816:CDS | 45.0% |
| ! | TGCATGCTCATGGTTGTTTC+TGG | + | chr7.1:4069033-4069052 | MS.gene050816:intron | 45.0% |
| !! | AGGTCATTGGTTTGCATGGA+GGG | + | chr7.1:4068628-4068647 | MS.gene050816:intron | 45.0% |
| !! | TAGGTCATTGGTTTGCATGG+AGG | + | chr7.1:4068627-4068646 | MS.gene050816:intron | 45.0% |
| !!! | TCTTTTTTTTTTTTTTATAA+GGG | + | chr7.1:4069601-4069620 | MS.gene050816:intron | 5.0% |
| !!! | TTCTTTTTTTTTTTTTTATA+AGG | + | chr7.1:4069600-4069619 | MS.gene050816:intron | 5.0% |
| AACCATGAGCATGCACCAGA+GGG | - | chr7.1:4069028-4069047 | None:intergenic | 50.0% | |
| CTCTACTTCCTCAGCCAGAA+TGG | + | chr7.1:4070003-4070022 | MS.gene050816:CDS | 50.0% | |
| CTGCAAGGTTGAAGCTCCAT+CGG | + | chr7.1:4069572-4069591 | MS.gene050816:intron | 50.0% | |
| GCGCCCACAATATAGATACC+TGG | + | chr7.1:4070094-4070113 | MS.gene050816:CDS | 50.0% | |
| TGGGAGACATTTCAGCCTGT+GGG | + | chr7.1:4069978-4069997 | MS.gene050816:CDS | 50.0% | |
| TTGCCACAAACAGTTGCCTC+CGG | - | chr7.1:4070160-4070179 | None:intergenic | 50.0% | |
| TTGGGAGACATTTCAGCCTG+TGG | + | chr7.1:4069977-4069996 | MS.gene050816:CDS | 50.0% | |
| ! | GGCCTGTCAGTCACTTTGTT+TGG | + | chr7.1:4069718-4069737 | MS.gene050816:intron | 50.0% |
| !! | GGTCATTGGTTTGCATGGAG+GGG | + | chr7.1:4068629-4068648 | MS.gene050816:intron | 50.0% |
| !! | TCAGCCAGAATGGACTGCTT+GGG | + | chr7.1:4070013-4070032 | MS.gene050816:CDS | 50.0% |
| ATTTGAGGGTGAGGTGGCAG+TGG | - | chr7.1:4069758-4069777 | None:intergenic | 55.0% | |
| CAACCATGAGCATGCACCAG+AGG | - | chr7.1:4069029-4069048 | None:intergenic | 55.0% | |
| CAAGGTTGAAGCTCCATCGG+AGG | + | chr7.1:4069575-4069594 | MS.gene050816:intron | 55.0% | |
| GGAGACATTTCAGCCTGTGG+GGG | + | chr7.1:4069980-4069999 | MS.gene050816:CDS | 55.0% | |
| GGGAGACATTTCAGCCTGTG+GGG | + | chr7.1:4069979-4069998 | MS.gene050816:CDS | 55.0% | |
| TGGTCCCAAGCAGTCCATTC+TGG | - | chr7.1:4070020-4070039 | None:intergenic | 55.0% | |
| TTCCCTCTGGTGCATGCTCA+TGG | + | chr7.1:4069023-4069042 | MS.gene050816:intron | 55.0% | |
| ! | CAAGCAGTCCATTCTGGCTG+AGG | - | chr7.1:4070014-4070033 | None:intergenic | 55.0% |
| !! | CGACTAGTGCTGTTTGGCAC+CGG | + | chr7.1:4070138-4070157 | MS.gene050816:CDS | 55.0% |
| !! | CTCAGCCAGAATGGACTGCT+TGG | + | chr7.1:4070012-4070031 | MS.gene050816:CDS | 55.0% |
| GCACCGGAGGCAACTGTTTG+TGG | + | chr7.1:4070154-4070173 | MS.gene050816:CDS | 60.0% | |
| TGAGGAAGTAGAGCCCCCAC+AGG | - | chr7.1:4069996-4070015 | None:intergenic | 60.0% | |
| !! | CTAGTGCTGTTTGGCACCGG+AGG | + | chr7.1:4070141-4070160 | MS.gene050816:CDS | 60.0% |
| !! | TTGCATGGAGGGGCACTGCT+TGG | + | chr7.1:4068639-4068658 | MS.gene050816:CDS | 60.0% |
| !!! | TTTTGAGGTGCCGCCTCAGC+TGG | - | chr7.1:4068810-4068829 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4067930 | 4070195 | 4067930 | ID=MS.gene050816 |
| chr7.1 | mRNA | 4067930 | 4070195 | 4067930 | ID=MS.gene050816.t1;Parent=MS.gene050816 |
| chr7.1 | exon | 4067930 | 4067989 | 4067930 | ID=MS.gene050816.t1.exon1;Parent=MS.gene050816.t1 |
| chr7.1 | CDS | 4067930 | 4067989 | 4067930 | ID=cds.MS.gene050816.t1;Parent=MS.gene050816.t1 |
| chr7.1 | exon | 4068630 | 4068844 | 4068630 | ID=MS.gene050816.t1.exon2;Parent=MS.gene050816.t1 |
| chr7.1 | CDS | 4068630 | 4068844 | 4068630 | ID=cds.MS.gene050816.t1;Parent=MS.gene050816.t1 |
| chr7.1 | exon | 4069977 | 4070195 | 4069977 | ID=MS.gene050816.t1.exon3;Parent=MS.gene050816.t1 |
| chr7.1 | CDS | 4069977 | 4070195 | 4069977 | ID=cds.MS.gene050816.t1;Parent=MS.gene050816.t1 |
| Gene Sequence |
| Protein sequence |
