Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28610.t1 | XP_003626104.2 | 99.4 | 957 | 6 | 0 | 1 | 957 | 168 | 1124 | 0.00E+00 | 1781.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28610.t1 | Q54K14 | 21.0 | 877 | 482 | 27 | 11 | 824 | 311 | 1039 | 4.6e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28610.t1 | G7KVH9 | 99.4 | 957 | 6 | 0 | 1 | 957 | 168 | 1124 | 0.0e+00 | 1781.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049209 | MS.gene28610 | 0.814636 | 1.39E-51 | -1.69E-46 |
| MS.gene050257 | MS.gene28610 | 0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene050816 | MS.gene28610 | 0.840316 | 9.36E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene28610 | 0.947041 | 1.45E-105 | -1.69E-46 |
| MS.gene050818 | MS.gene28610 | 0.857365 | 1.72E-62 | -1.69E-46 |
| MS.gene050894 | MS.gene28610 | 0.830145 | 3.46E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene28610 | 0.83609 | 1.15E-56 | -1.69E-46 |
| MS.gene052676 | MS.gene28610 | 0.81024 | 1.27E-50 | -1.69E-46 |
| MS.gene052678 | MS.gene28610 | 0.829423 | 5.19E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene28610 | 0.859622 | 3.64E-63 | -1.69E-46 |
| MS.gene054585 | MS.gene28610 | 0.87745 | 6.22E-69 | -1.69E-46 |
| MS.gene054824 | MS.gene28610 | 0.845657 | 3.54E-59 | -1.69E-46 |
| MS.gene058649 | MS.gene28610 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene05938 | MS.gene28610 | 0.817286 | 3.57E-52 | -1.69E-46 |
| MS.gene060398 | MS.gene28610 | 0.809686 | 1.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCCTCAGTTTCTTATT+AGG | 0.146986 | 7.1:-4014222 | None:intergenic |
| CCTGCCACAGTGTGGCTTCT+TGG | 0.158323 | 7.1:+4013942 | MS.gene28610:CDS |
| ATGGGACACGGTCTCCTTTA+AGG | 0.178355 | 7.1:+4013794 | MS.gene28610:CDS |
| TCATATGTTTGCAGGTATTT+AGG | 0.198111 | 7.1:+4015530 | MS.gene28610:intron |
| TTTCAGGCTCTTCTGGTTTC+GGG | 0.211472 | 7.1:+4013284 | MS.gene28610:intron |
| ACACTGTGGCAGGCCAATTT+TGG | 0.221087 | 7.1:-4013932 | None:intergenic |
| GGTTGGGTTTCAGGCTCTTC+TGG | 0.223591 | 7.1:+4013277 | MS.gene28610:intron |
| GTGATGGATTGCTCATAATT+TGG | 0.228382 | 7.1:+4013312 | MS.gene28610:CDS |
| CAGCCACATCTTGTTGCTAT+TGG | 0.232135 | 7.1:+4014614 | MS.gene28610:CDS |
| GAACTTCCCTTGGGAATTAT+AGG | 0.235093 | 7.1:-4015698 | None:intergenic |
| GTTTCAGGCTCTTCTGGTTT+CGG | 0.246787 | 7.1:+4013283 | MS.gene28610:intron |
| GAAATTCGCAAAAGAGTTCT+TGG | 0.260127 | 7.1:+4021510 | MS.gene28610:CDS |
| GTTCTTTCTGTGAGCAGTTC+AGG | 0.263386 | 7.1:+4014920 | MS.gene28610:CDS |
| TGGTCCCAAGCAGTCCATTC+TGG | 0.264020 | 7.1:-4017896 | None:intergenic |
| GACGGTCCTCTTGTGGCTTT+TGG | 0.273073 | 7.1:+4012677 | MS.gene28610:CDS |
| ATACCCTCAGTTTCTTATTA+GGG | 0.283891 | 7.1:-4014221 | None:intergenic |
| TATAAAGCCAGTTCCAAAAT+TGG | 0.291327 | 7.1:+4013919 | MS.gene28610:CDS |
| GCAGCAGCTGCAGCTGCTGC+TGG | 0.294264 | 7.1:+4015758 | MS.gene28610:CDS |
| CAGATAAGACATTAGCTATA+TGG | 0.304586 | 7.1:+4013775 | MS.gene28610:CDS |
| TGTCGATGTCTTGCTGCTTA+TGG | 0.312448 | 7.1:+4020987 | MS.gene28610:CDS |
| CTCTTGCTTGAAGTCCTTCA+TGG | 0.315401 | 7.1:+4012853 | MS.gene28610:CDS |
| ATGAGTAATAGCCGGGATAT+TGG | 0.317519 | 7.1:+4021379 | MS.gene28610:CDS |
| GATATTGGGCACGATGGTAC+TGG | 0.319051 | 7.1:+4021394 | MS.gene28610:CDS |
| AGATGTAGTTGAAGGTGTTC+AGG | 0.321407 | 7.1:+4021480 | MS.gene28610:CDS |
| CCATCAGCTCTAGATTGTTT+TGG | 0.325688 | 7.1:-4019949 | None:intergenic |
| CTGCAGGCTGGAGTTTGATT+TGG | 0.329519 | 7.1:+4021309 | MS.gene28610:intron |
| AAGTCCTTCATGGCAGCTTC+AGG | 0.343158 | 7.1:+4012863 | MS.gene28610:CDS |
| TCGTGACAGATTTGCTATAC+TGG | 0.343161 | 7.1:+4015652 | MS.gene28610:CDS |
| GTTGCTATTGGAACCAATAT+TGG | 0.343576 | 7.1:+4014626 | MS.gene28610:CDS |
| AGCACCAATACATACCTTAA+AGG | 0.347234 | 7.1:-4013808 | None:intergenic |
| GCAGATAACAACACCAATAT+TGG | 0.347249 | 7.1:-4014639 | None:intergenic |
| GCTGCAGCTGGATCAGTTAA+AGG | 0.351981 | 7.1:+4021598 | MS.gene28610:CDS |
| TTTCCCTGCTTGACAGGTAA+TGG | 0.353036 | 7.1:-4014857 | None:intergenic |
| TTCATTTCAGCATGCTCCTT+CGG | 0.357916 | 7.1:+4019906 | MS.gene28610:CDS |
| ATCCAGTCTATGCCATTATC+AGG | 0.369025 | 7.1:+4016598 | MS.gene28610:CDS |
| GAGAAAGCATGGCAGGATAC+TGG | 0.378910 | 7.1:+4023389 | MS.gene28610:CDS |
| CAGAAGAAAGAATATCATTA+AGG | 0.380973 | 7.1:+4019159 | MS.gene28610:CDS |
| AAGATATGACTATGTATTGT+TGG | 0.384764 | 7.1:-4017946 | None:intergenic |
| ACAGAAAAGTAAGGAATATC+TGG | 0.385954 | 7.1:-4015563 | None:intergenic |
| AACAGCTCCTTGTCAGAAAC+AGG | 0.388078 | 7.1:+4014809 | MS.gene28610:CDS |
| TTCCATCATCCAACATAATT+CGG | 0.388734 | 7.1:-4015802 | None:intergenic |
| ACACACCTCTTTGATATTCC+AGG | 0.390212 | 7.1:-4021204 | None:intergenic |
| GGCACATGACGGCGGGGTTG+TGG | 0.393623 | 7.1:+4013698 | MS.gene28610:intron |
| ACCACAACAAGAGGCCCAAC+CGG | 0.393627 | 7.1:-4020081 | None:intergenic |
| TGAGTAATAGCCGGGATATT+GGG | 0.393707 | 7.1:+4021380 | MS.gene28610:CDS |
| CTCAAAACTTCCAGCTATAC+AGG | 0.400917 | 7.1:+4016701 | MS.gene28610:CDS |
| CTGCTTCCATAACCTGATAA+TGG | 0.403037 | 7.1:-4016610 | None:intergenic |
| TTGCATGGAGGGGCACTGCT+TGG | 0.403387 | 7.1:+4016517 | MS.gene28610:CDS |
| GGGGTAGGTAGGGGAGCAAC+AGG | 0.404564 | 7.1:-4014686 | None:intergenic |
| TCTATGCCATTATCAGGTTA+TGG | 0.412474 | 7.1:+4016604 | MS.gene28610:CDS |
| CTGCTGTATTTGTAATAGAA+AGG | 0.412544 | 7.1:+4014729 | MS.gene28610:CDS |
| AGCACAATTTATGCTAGGAA+TGG | 0.416057 | 7.1:+4021155 | MS.gene28610:CDS |
| ATAAATTTCACCTGTATAGC+TGG | 0.418298 | 7.1:-4016711 | None:intergenic |
| GCACCGGAGGCAACTGTTTG+TGG | 0.418498 | 7.1:+4018033 | MS.gene28610:CDS |
| CACCAACGCCAGATCTATAA+AGG | 0.419157 | 7.1:-4012655 | None:intergenic |
| AGGTCATTGGTTTGCATGGA+GGG | 0.419161 | 7.1:+4016506 | MS.gene28610:intron |
| CTTTCTTCTGTAGTAGATTG+AGG | 0.420013 | 7.1:-4019146 | None:intergenic |
| TCTTGTTGTGGTCGGTGTTA+AGG | 0.425751 | 7.1:+4020092 | MS.gene28610:CDS |
| ATGGAGTTCCTTTATAGATC+TGG | 0.426366 | 7.1:+4012647 | MS.gene28610:CDS |
| GCATTGCGCCTTGCAAATCA+TGG | 0.426731 | 7.1:+4021652 | MS.gene28610:CDS |
| GAAATAGCTGTAGCAGCAAT+AGG | 0.426838 | 7.1:-4016571 | None:intergenic |
| AACCTAATCACGCTTGGCTT+GGG | 0.431062 | 7.1:+4023317 | MS.gene28610:CDS |
| CATATGCGACTAGTGCTGTT+TGG | 0.432824 | 7.1:+4018011 | MS.gene28610:CDS |
| GTGTTAAGGATGGAGTTCTT+TGG | 0.432851 | 7.1:+4020106 | MS.gene28610:CDS |
| GGGCACGATGGTACTGGGCT+GGG | 0.434059 | 7.1:+4021400 | MS.gene28610:CDS |
| ATTCCATGCAGCTTGCTAGA+AGG | 0.434384 | 7.1:+4012804 | MS.gene28610:intron |
| CAACCTAATCACGCTTGGCT+TGG | 0.434812 | 7.1:+4023316 | MS.gene28610:CDS |
| CTGTCTACAAGGTCAGTGAT+TGG | 0.439179 | 7.1:+4015582 | MS.gene28610:CDS |
| GCAGGTATTTAGGAATCGTT+TGG | 0.439695 | 7.1:+4015540 | MS.gene28610:intron |
| CTCAGCCAGAATGGACTGCT+TGG | 0.443742 | 7.1:+4017891 | MS.gene28610:CDS |
| TGGGCACGATGGTACTGGGC+TGG | 0.446155 | 7.1:+4021399 | MS.gene28610:CDS |
| TGCTTCTTTCCCTGCTTGAC+AGG | 0.446324 | 7.1:-4014863 | None:intergenic |
| GAGTATGAATCATGAGGAAC+AGG | 0.446528 | 7.1:-4014896 | None:intergenic |
| CTGGTTTCGGGTGCTAGTGA+TGG | 0.447641 | 7.1:+4013296 | MS.gene28610:CDS |
| GAGTTCTTTGGCTAATTGAC+AGG | 0.448045 | 7.1:+4020118 | MS.gene28610:CDS |
| AAGCACAATACTCGATGGTT+TGG | 0.448711 | 7.1:-4017916 | None:intergenic |
| GCACAATTTATGCTAGGAAT+GGG | 0.449349 | 7.1:+4021156 | MS.gene28610:CDS |
| ACTATCTGATGGGGTAGGTA+GGG | 0.449390 | 7.1:-4014696 | None:intergenic |
| ATGCTGTTAGTGCAGTAAAA+TGG | 0.453501 | 7.1:+4021012 | MS.gene28610:CDS |
| AAGACATCGACAGCGAATAC+CGG | 0.456528 | 7.1:-4020976 | None:intergenic |
| GTCCCAAGCCAAGCGTGATT+AGG | 0.457067 | 7.1:-4023319 | None:intergenic |
| TGGGAGACATTTCAGCCTGT+GGG | 0.458762 | 7.1:+4017857 | MS.gene28610:CDS |
| ACGGAAGCACTTCATTTGCC+TGG | 0.463828 | 7.1:+4021186 | MS.gene28610:CDS |
| AGGTACACTGGAGGTCATAA+AGG | 0.466461 | 7.1:+4012824 | MS.gene28610:CDS |
| CTGAAGAGGTTAGCTGCAGC+TGG | 0.467189 | 7.1:+4021586 | MS.gene28610:CDS |
| TTTGCTGCAGGTGTATTGTA+TGG | 0.469308 | 7.1:+4014577 | MS.gene28610:intron |
| TTGGCTCTAATTACAGTTGA+AGG | 0.469878 | 7.1:+4019122 | MS.gene28610:CDS |
| TGCTGTATTTGTAATAGAAA+GGG | 0.471695 | 7.1:+4014730 | MS.gene28610:CDS |
| AGATAAGACATTAGCTATAT+GGG | 0.473469 | 7.1:+4013776 | MS.gene28610:CDS |
| CTTTACAAGGTCATGAATTG+AGG | 0.474786 | 7.1:+4021623 | MS.gene28610:CDS |
| GCTCCTCAGCTAATTACAAT+TGG | 0.477705 | 7.1:+4013750 | MS.gene28610:CDS |
| TGACACAGGTTAGAATATCA+AGG | 0.478884 | 7.1:-4013985 | None:intergenic |
| CGCTGCAGATGCTACAGCAC+AGG | 0.479021 | 7.1:+4021543 | MS.gene28610:CDS |
| CCTATTCTAGGTGGTTCGAT+TGG | 0.479406 | 7.1:+4019882 | MS.gene28610:intron |
| TTGGGAGACATTTCAGCCTG+TGG | 0.480746 | 7.1:+4017856 | MS.gene28610:CDS |
| CTCTACTTCCTCAGCCAGAA+TGG | 0.481221 | 7.1:+4017882 | MS.gene28610:CDS |
| CTCCCAGGTATCTATATTGT+GGG | 0.482317 | 7.1:-4017976 | None:intergenic |
| GAGCTGATGGTGACGACTCA+TGG | 0.482770 | 7.1:+4019962 | MS.gene28610:CDS |
| TACTATCTGATGGGGTAGGT+AGG | 0.482921 | 7.1:-4014697 | None:intergenic |
| CCAAGAAGCCACACTGTGGC+AGG | 0.482982 | 7.1:-4013942 | None:intergenic |
| CTATCTGATGGGGTAGGTAG+GGG | 0.484183 | 7.1:-4014695 | None:intergenic |
| GCATCTAGGCACATGACGGC+GGG | 0.484753 | 7.1:+4013691 | MS.gene28610:intron |
| GAAGTGCCAGGCTTCTCGCA+TGG | 0.485066 | 7.1:+4015621 | MS.gene28610:CDS |
| TCCGGTTGGGCCTCTTGTTG+TGG | 0.485814 | 7.1:+4020080 | MS.gene28610:CDS |
| GTAGGTAGGGGAGCAACAGG+TGG | 0.488754 | 7.1:-4014683 | None:intergenic |
| TGGAGCAGAAACGTCCGGTT+GGG | 0.489410 | 7.1:+4020067 | MS.gene28610:CDS |
| TGAACCATTACCTGTCAAGC+AGG | 0.494460 | 7.1:+4014853 | MS.gene28610:CDS |
| AGTTGAGCTTTCTAGAGTGA+TGG | 0.494949 | 7.1:+4013722 | MS.gene28610:CDS |
| TCAGCCAGAATGGACTGCTT+GGG | 0.494971 | 7.1:+4017892 | MS.gene28610:CDS |
| TGTTCAAGTCCGAATTATGT+TGG | 0.495823 | 7.1:+4015793 | MS.gene28610:CDS |
| GGTCATTGGTTTGCATGGAG+GGG | 0.497803 | 7.1:+4016507 | MS.gene28610:intron |
| GATGTAGTTGAAGGTGTTCA+GGG | 0.498781 | 7.1:+4021481 | MS.gene28610:CDS |
| TCAAACAGGGCAAGTAGGCT+TGG | 0.498847 | 7.1:+4021111 | MS.gene28610:intron |
| TATAGATCTGGCGTTGGTGA+CGG | 0.499135 | 7.1:+4012659 | MS.gene28610:CDS |
| ATAAACAACCTAATCACGCT+TGG | 0.500648 | 7.1:+4023311 | MS.gene28610:CDS |
| TTCTTACCATGAGTAATAGC+CGG | 0.503075 | 7.1:+4021371 | MS.gene28610:CDS |
| TCTTACCATGAGTAATAGCC+GGG | 0.504763 | 7.1:+4021372 | MS.gene28610:CDS |
| CAAACAGCACTAGTCGCATA+TGG | 0.507974 | 7.1:-4018010 | None:intergenic |
| CCACATATTCTGCTCTCACT+AGG | 0.510622 | 7.1:+4014154 | MS.gene28610:CDS |
| GAATGCTCTCTACTATCTGA+TGG | 0.512710 | 7.1:-4014707 | None:intergenic |
| ATAATTTGGAGTGCTGATCA+TGG | 0.513470 | 7.1:+4013326 | MS.gene28610:CDS |
| GTCCGAATTATGTTGGATGA+TGG | 0.513836 | 7.1:+4015800 | MS.gene28610:CDS |
| TCTTTCAATGATTACATGGA+AGG | 0.517791 | 7.1:+4012724 | MS.gene28610:CDS |
| ATGGTTCAAAAGCATCTCCC+TGG | 0.518104 | 7.1:-4014838 | None:intergenic |
| GAACATCAAATATGCTAATG+AGG | 0.519478 | 7.1:+4015822 | MS.gene28610:CDS |
| CAGGTTAGAATATCAAGGTT+CGG | 0.521517 | 7.1:-4013980 | None:intergenic |
| GAAATAGCGGTTGGTGGAGG+AGG | 0.521857 | 7.1:+4020015 | MS.gene28610:CDS |
| CTCGCCTGAAGCTGCCATGA+AGG | 0.523060 | 7.1:-4012867 | None:intergenic |
| CGACTAGTGCTGTTTGGCAC+CGG | 0.523385 | 7.1:+4018017 | MS.gene28610:CDS |
| TCTCCCAGGTATCTATATTG+TGG | 0.523820 | 7.1:-4017977 | None:intergenic |
| AGTATCCCATGCGAGAAGCC+TGG | 0.523887 | 7.1:-4015627 | None:intergenic |
| CTAACCTCTTCAGAGCTTCA+CGG | 0.524329 | 7.1:-4021576 | None:intergenic |
| GAGCTGTTATTTCCGAGTGA+TGG | 0.524352 | 7.1:-4014794 | None:intergenic |
| GGGTCTTCCTGTTTCTGACA+AGG | 0.524676 | 7.1:-4014816 | None:intergenic |
| GATGCTTACTCAATAGTAGT+TGG | 0.524936 | 7.1:-4018061 | None:intergenic |
| AGACATCGACAGCGAATACC+GGG | 0.525157 | 7.1:-4020975 | None:intergenic |
| GTTGAGCTTTCTAGAGTGAT+GGG | 0.525416 | 7.1:+4013723 | MS.gene28610:CDS |
| GAGTTCTTTCAATGATTACA+TGG | 0.526385 | 7.1:+4012720 | MS.gene28610:CDS |
| TCAGTTAAAGGTGCTTTACA+AGG | 0.528069 | 7.1:+4021610 | MS.gene28610:CDS |
| GCGCCCACAATATAGATACC+TGG | 0.528122 | 7.1:+4017973 | MS.gene28610:CDS |
| CCTAGTGAGAGCAGAATATG+TGG | 0.528222 | 7.1:-4014154 | None:intergenic |
| GATTTAGCACAATTTATGCT+AGG | 0.528425 | 7.1:+4021150 | MS.gene28610:CDS |
| ATATTGGGCACGATGGTACT+GGG | 0.529168 | 7.1:+4021395 | MS.gene28610:CDS |
| TTGTTGACTCTGGAAGTGCC+AGG | 0.529575 | 7.1:+4015609 | MS.gene28610:CDS |
| TAGGTCATTGGTTTGCATGG+AGG | 0.530097 | 7.1:+4016505 | MS.gene28610:intron |
| CCAAAACAATCTAGAGCTGA+TGG | 0.530123 | 7.1:+4019949 | MS.gene28610:CDS |
| TCCGATGGAGCAGAAACGTC+CGG | 0.531504 | 7.1:+4020062 | MS.gene28610:CDS |
| TTGCCACAAACAGTTGCCTC+CGG | 0.540164 | 7.1:-4018036 | None:intergenic |
| ATGGCAGGATACTGGAATGA+TGG | 0.541037 | 7.1:+4023397 | MS.gene28610:CDS |
| ACCGGACGTTTCTGCTCCAT+CGG | 0.542874 | 7.1:-4020063 | None:intergenic |
| TTGGGAATTATAGGAATTCG+AGG | 0.543332 | 7.1:-4015689 | None:intergenic |
| AACCTGATAATGGCATAGAC+TGG | 0.543681 | 7.1:-4016600 | None:intergenic |
| ATTAAGGCCACCGATGCTGC+AGG | 0.544573 | 7.1:+4019175 | MS.gene28610:CDS |
| AGTGAAATAGCGGTTGGTGG+AGG | 0.545934 | 7.1:+4020012 | MS.gene28610:CDS |
| GCCTTATCTTTGAGTCATCC+CGG | 0.546193 | 7.1:+4020957 | MS.gene28610:CDS |
| AATATCAGAGCATGGAGAGT+TGG | 0.549147 | 7.1:+4019103 | MS.gene28610:CDS |
| TGGTTCAAAAGCATCTCCCT+GGG | 0.549450 | 7.1:-4014837 | None:intergenic |
| TCGAATTCCTATAATTCCCA+AGG | 0.550061 | 7.1:+4015691 | MS.gene28610:CDS |
| TAATCACGCTTGGCTTGGGA+CGG | 0.550062 | 7.1:+4023321 | MS.gene28610:CDS |
| GGGAGACATTTCAGCCTGTG+GGG | 0.550620 | 7.1:+4017858 | MS.gene28610:CDS |
| CAAGCAGTCCATTCTGGCTG+AGG | 0.551410 | 7.1:-4017890 | None:intergenic |
| GATAGGAAAGGTGGCACCGA+AGG | 0.552730 | 7.1:-4019922 | None:intergenic |
| CGTTGGTGACGGTCCTCTTG+TGG | 0.553165 | 7.1:+4012670 | MS.gene28610:CDS |
| GGAGACATTTCAGCCTGTGG+GGG | 0.556776 | 7.1:+4017859 | MS.gene28610:CDS |
| AAGTGCCAGGCTTCTCGCAT+GGG | 0.557808 | 7.1:+4015622 | MS.gene28610:CDS |
| GTCAGAAACAGGAAGACCCC+AGG | 0.560823 | 7.1:+4014820 | MS.gene28610:CDS |
| TACCCTCAGTTTCTTATTAG+GGG | 0.561419 | 7.1:-4014220 | None:intergenic |
| TACCATCGTGCCCAATATCC+CGG | 0.561764 | 7.1:-4021390 | None:intergenic |
| GCTAGGAATGGGCTATGCTA+CGG | 0.562069 | 7.1:+4021167 | MS.gene28610:CDS |
| AAGAGCGTGTGGAGGAATAA+CGG | 0.562110 | 7.1:-4014196 | None:intergenic |
| ATGGAGCAGAAACGTCCGGT+TGG | 0.563286 | 7.1:+4020066 | MS.gene28610:CDS |
| AATGCTCTCTACTATCTGAT+GGG | 0.564934 | 7.1:-4014706 | None:intergenic |
| CAAATCATGGAGAGTTGACT+CGG | 0.565410 | 7.1:+4021665 | MS.gene28610:CDS |
| TAACCTCTTCAGAGCTTCAC+GGG | 0.567211 | 7.1:-4021575 | None:intergenic |
| GTTGGGCCTCTTGTTGTGGT+CGG | 0.567755 | 7.1:+4020084 | MS.gene28610:CDS |
| ACAAGTGAAATAGCGGTTGG+TGG | 0.570809 | 7.1:+4020009 | MS.gene28610:CDS |
| TCTAATGGAGAAAGCATGGC+AGG | 0.571254 | 7.1:+4023382 | MS.gene28610:CDS |
| TTCCTTTATAGATCTGGCGT+TGG | 0.572120 | 7.1:+4012653 | MS.gene28610:CDS |
| TGGTGGAGGAGGCGTGTCTG+TGG | 0.573140 | 7.1:+4020026 | MS.gene28610:CDS |
| AATCACGCTTGGCTTGGGAC+GGG | 0.574767 | 7.1:+4023322 | MS.gene28610:CDS |
| TACGTGAGAATCTTTGACAC+AGG | 0.575126 | 7.1:-4013999 | None:intergenic |
| GATTCTCCTAGATGTTCGAT+AGG | 0.575353 | 7.1:-4016545 | None:intergenic |
| CGCCCACAATATAGATACCT+GGG | 0.576267 | 7.1:+4017974 | MS.gene28610:CDS |
| AAATAGATCTCCAGCTGAGG+CGG | 0.578862 | 7.1:+4016675 | MS.gene28610:CDS |
| CAGCTTGCTAGAAGGTACAC+TGG | 0.579852 | 7.1:+4012812 | MS.gene28610:intron |
| AATATCCCGGCTATTACTCA+TGG | 0.580262 | 7.1:-4021377 | None:intergenic |
| TTTGGTAATGATAGGAAAGG+TGG | 0.581242 | 7.1:-4019931 | None:intergenic |
| TTTACAAGGTCATGAATTGA+GGG | 0.581412 | 7.1:+4021624 | MS.gene28610:CDS |
| GTGTCAAAGATTCTCACGTA+TGG | 0.581676 | 7.1:+4014002 | MS.gene28610:CDS |
| CTAGTGCTGTTTGGCACCGG+AGG | 0.583399 | 7.1:+4018020 | MS.gene28610:CDS |
| GTTGTGGTCGGTGTTAAGGA+TGG | 0.585013 | 7.1:+4020096 | MS.gene28610:CDS |
| TTATTAGGGGCAAGAGCGTG+TGG | 0.585452 | 7.1:-4014207 | None:intergenic |
| ACCGGGATGACTCAAAGATA+AGG | 0.586920 | 7.1:-4020958 | None:intergenic |
| ATATCAAGGTTCGGAGCTCG+AGG | 0.588597 | 7.1:-4013971 | None:intergenic |
| GTGTTGCCTATCGAACATCT+AGG | 0.592674 | 7.1:+4016539 | MS.gene28610:CDS |
| TCAACTCTCCATGATTTGCA+AGG | 0.594298 | 7.1:-4021660 | None:intergenic |
| GATTGGTCGATTGTTGACTC+TGG | 0.594520 | 7.1:+4015599 | MS.gene28610:CDS |
| ATGCTCTAATGGAGAAAGCA+TGG | 0.596377 | 7.1:+4023378 | MS.gene28610:CDS |
| GGATACTGGAATGATGGCAG+AGG | 0.598475 | 7.1:+4023403 | MS.gene28610:CDS |
| TCTCTACTATCTGATGGGGT+AGG | 0.600544 | 7.1:-4014701 | None:intergenic |
| TTAACACCGACCACAACAAG+AGG | 0.603163 | 7.1:-4020090 | None:intergenic |
| TGCATCTAGGCACATGACGG+CGG | 0.607347 | 7.1:+4013690 | MS.gene28610:intron |
| AACTCTGTAAATCCATCACT+CGG | 0.608617 | 7.1:+4014782 | MS.gene28610:CDS |
| TTCAAATAGATCTCCAGCTG+AGG | 0.612307 | 7.1:+4016672 | MS.gene28610:CDS |
| TTGCCCGTGAAGCTCTGAAG+AGG | 0.612343 | 7.1:+4021572 | MS.gene28610:CDS |
| TGCCCCTAATAAGAAACTGA+GGG | 0.612486 | 7.1:+4014218 | MS.gene28610:CDS |
| GAACCATTACCTGTCAAGCA+GGG | 0.614271 | 7.1:+4014854 | MS.gene28610:CDS |
| AAGACAAGTGAAATAGCGGT+TGG | 0.620679 | 7.1:+4020006 | MS.gene28610:CDS |
| ACAAGAGCAATATCAGAGCA+TGG | 0.626182 | 7.1:+4019095 | MS.gene28610:CDS |
| CTCATGGACAAAAGAAGCAG+AGG | 0.627228 | 7.1:+4019978 | MS.gene28610:CDS |
| ACCTTGTAGACAGAAAAGTA+AGG | 0.629590 | 7.1:-4015572 | None:intergenic |
| GATGCACCAAAAGCCACAAG+AGG | 0.631832 | 7.1:-4012683 | None:intergenic |
| TGCAAAAGCACAATACTCGA+TGG | 0.635069 | 7.1:-4017921 | None:intergenic |
| TTGCCCCTAATAAGAAACTG+AGG | 0.636362 | 7.1:+4014217 | MS.gene28610:CDS |
| ATTTGCCTGGAATATCAAAG+AGG | 0.636615 | 7.1:+4021199 | MS.gene28610:CDS |
| AGCCGGGATATTGGGCACGA+TGG | 0.637666 | 7.1:+4021388 | MS.gene28610:CDS |
| ATGGAATTGAAACATCTCCC+AGG | 0.638441 | 7.1:-4017991 | None:intergenic |
| AATATGCTAATGAGGTCTGT+TGG | 0.639966 | 7.1:+4015830 | MS.gene28610:CDS |
| GCGCCAATTGTAATTAGCTG+AGG | 0.640157 | 7.1:-4013753 | None:intergenic |
| ATGCTCTCTACTATCTGATG+GGG | 0.640747 | 7.1:-4014705 | None:intergenic |
| GAGAAAGACAAGTGAAATAG+CGG | 0.642053 | 7.1:+4020002 | MS.gene28610:CDS |
| CAAGGTTCGGAGCTCGAGGG+TGG | 0.647667 | 7.1:-4013967 | None:intergenic |
| CGAATTCCTATAATTCCCAA+GGG | 0.648181 | 7.1:+4015692 | MS.gene28610:CDS |
| AGAACTGAGTATGAATCATG+AGG | 0.648295 | 7.1:-4014902 | None:intergenic |
| GTTCCAATAGCAACAAGATG+TGG | 0.650417 | 7.1:-4014617 | None:intergenic |
| CTTCATGGCAGCTTCAGGCG+AGG | 0.650772 | 7.1:+4012868 | MS.gene28610:CDS |
| GCTGCAGATGCTACAGCACA+GGG | 0.652461 | 7.1:+4021544 | MS.gene28610:CDS |
| CATCTAGGCACATGACGGCG+GGG | 0.653225 | 7.1:+4013692 | MS.gene28610:intron |
| TTACAAGGTCATGAATTGAG+GGG | 0.654271 | 7.1:+4021625 | MS.gene28610:CDS |
| TATCAAGGTTCGGAGCTCGA+GGG | 0.657549 | 7.1:-4013970 | None:intergenic |
| TCAGAAACAGGAAGACCCCA+GGG | 0.660386 | 7.1:+4014821 | MS.gene28610:CDS |
| GACATTAGCTATATGGGACA+CGG | 0.665115 | 7.1:+4013782 | MS.gene28610:CDS |
| TTATCAGGTTATGGAAGCAG+CGG | 0.668159 | 7.1:+4016613 | MS.gene28610:CDS |
| TGATGCATCTAGGCACATGA+CGG | 0.671546 | 7.1:+4013687 | MS.gene28610:intron |
| AAAATTGGCCTGCCACAGTG+TGG | 0.682317 | 7.1:+4013934 | MS.gene28610:CDS |
| GAGCTTTCTAGAGTGATGGG+AGG | 0.688391 | 7.1:+4013726 | MS.gene28610:CDS |
| ACGGTAGTCAATTCACACAA+TGG | 0.696769 | 7.1:-4014177 | None:intergenic |
| TTAGGGGCAAGAGCGTGTGG+AGG | 0.698797 | 7.1:-4014204 | None:intergenic |
| TAAATTGTGCTAAATCATCG+TGG | 0.722125 | 7.1:-4021143 | None:intergenic |
| CTTGCTAGAAGGTACACTGG+AGG | 0.722740 | 7.1:+4012815 | MS.gene28610:CDS |
| GGCACCAAGAAGCCACACTG+TGG | 0.725339 | 7.1:-4013946 | None:intergenic |
| GGTTCAAAAGCATCTCCCTG+GGG | 0.735509 | 7.1:-4014836 | None:intergenic |
| CTAGTGAGAGCAGAATATGT+GGG | 0.736342 | 7.1:-4014153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4012646 | 4023442 | 4012646 | ID=MS.gene28610 |
| chr7.1 | mRNA | 4012646 | 4023442 | 4012646 | ID=MS.gene28610.t1;Parent=MS.gene28610 |
| chr7.1 | exon | 4012646 | 4012745 | 4012646 | ID=MS.gene28610.t1.exon1;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4012646 | 4012745 | 4012646 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4012815 | 4012889 | 4012815 | ID=MS.gene28610.t1.exon2;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4012815 | 4012889 | 4012815 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4013290 | 4013388 | 4013290 | ID=MS.gene28610.t1.exon3;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4013290 | 4013388 | 4013290 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4013699 | 4013815 | 4013699 | ID=MS.gene28610.t1.exon4;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4013699 | 4013815 | 4013699 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4013908 | 4014023 | 4013908 | ID=MS.gene28610.t1.exon5;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4013908 | 4014023 | 4013908 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4014140 | 4014239 | 4014140 | ID=MS.gene28610.t1.exon6;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4014140 | 4014239 | 4014140 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4014587 | 4014945 | 4014587 | ID=MS.gene28610.t1.exon7;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4014587 | 4014945 | 4014587 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4015544 | 4015868 | 4015544 | ID=MS.gene28610.t1.exon8;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4015544 | 4015868 | 4015544 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4016508 | 4016722 | 4016508 | ID=MS.gene28610.t1.exon9;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4016508 | 4016722 | 4016508 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4017856 | 4018074 | 4017856 | ID=MS.gene28610.t1.exon10;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4017856 | 4018074 | 4017856 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4019010 | 4019196 | 4019010 | ID=MS.gene28610.t1.exon11;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4019010 | 4019196 | 4019010 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4019892 | 4020139 | 4019892 | ID=MS.gene28610.t1.exon12;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4019892 | 4020139 | 4019892 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4020941 | 4021033 | 4020941 | ID=MS.gene28610.t1.exon13;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4020941 | 4021033 | 4020941 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4021119 | 4021220 | 4021119 | ID=MS.gene28610.t1.exon14;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4021119 | 4021220 | 4021119 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4021315 | 4021693 | 4021315 | ID=MS.gene28610.t1.exon15;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4021315 | 4021693 | 4021315 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| chr7.1 | exon | 4023305 | 4023442 | 4023305 | ID=MS.gene28610.t1.exon16;Parent=MS.gene28610.t1 |
| chr7.1 | CDS | 4023305 | 4023442 | 4023305 | ID=cds.MS.gene28610.t1;Parent=MS.gene28610.t1 |
| Gene Sequence |
| Protein sequence |
