Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051090.t1 | XP_024627600.1 | 91.2 | 171 | 15 | 0 | 1 | 171 | 1 | 171 | 8.30E-84 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051090.t1 | Q6NLG3 | 67.9 | 134 | 43 | 0 | 39 | 172 | 1 | 134 | 7.5e-49 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051090.t1 | A0A396GLG2 | 91.2 | 171 | 15 | 0 | 1 | 171 | 1 | 171 | 6.0e-84 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051090 | MS.gene89149 | 0.879422 | 1.26E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022630 | MS.gene051090 | PPI |
| MS.gene037854 | MS.gene051090 | PPI |
| MS.gene051090 | MS.gene055420 | PPI |
| MS.gene99162 | MS.gene051090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051090.t1 | MTR_8g021233 | 94.074 | 135 | 8 | 0 | 1 | 135 | 39 | 173 | 2.26e-91 | 265 |
| MS.gene051090.t1 | MTR_8g007235 | 34.074 | 135 | 86 | 1 | 34 | 168 | 3 | 134 | 8.13e-24 | 91.7 |
| MS.gene051090.t1 | MTR_4g104030 | 32.847 | 137 | 89 | 1 | 32 | 168 | 81 | 214 | 2.86e-22 | 89.7 |
| MS.gene051090.t1 | MTR_8g099450 | 31.159 | 138 | 92 | 1 | 30 | 167 | 81 | 215 | 9.61e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051090.t1 | AT1G17410 | 65.972 | 144 | 49 | 0 | 29 | 172 | 28 | 171 | 2.23e-69 | 208 |
| MS.gene051090.t1 | AT1G17410 | 67.910 | 134 | 43 | 0 | 39 | 172 | 1 | 134 | 3.36e-66 | 199 |
| MS.gene051090.t1 | AT1G17410 | 67.708 | 96 | 31 | 0 | 39 | 134 | 1 | 96 | 1.31e-44 | 144 |
| MS.gene051090.t1 | AT5G63310 | 36.496 | 137 | 84 | 1 | 32 | 168 | 82 | 215 | 8.09e-26 | 99.0 |
| MS.gene051090.t1 | AT4G09320 | 33.582 | 134 | 86 | 1 | 33 | 166 | 1 | 131 | 4.71e-24 | 92.4 |
| MS.gene051090.t1 | AT4G11010 | 31.646 | 158 | 104 | 2 | 11 | 167 | 65 | 219 | 6.71e-22 | 89.0 |
| MS.gene051090.t1 | AT4G23900 | 30.488 | 164 | 110 | 2 | 5 | 167 | 58 | 218 | 3.19e-21 | 87.0 |
| MS.gene051090.t1 | AT4G23895 | 30.488 | 164 | 110 | 2 | 5 | 167 | 288 | 448 | 3.54e-20 | 87.0 |
Find 33 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTCTTTGTGCAGATT+TGG | 0.258721 | 8.3:+69959667 | None:intergenic |
| TGCTGATTGGCGCGCTTTGA+TGG | 0.267455 | 8.3:-69959873 | MS.gene051090:CDS |
| ATCTCTCTTTGTGCAGATTT+GGG | 0.271587 | 8.3:+69959668 | None:intergenic |
| ACCGGTGTTAGTCATGGTTT+TGG | 0.320603 | 8.3:-69959912 | MS.gene051090:CDS |
| TTCTTCAAAGAGCTCTCTCC+AGG | 0.402768 | 8.3:-69959638 | MS.gene051090:CDS |
| GTTGGATTCATCAGAATACT+TGG | 0.436732 | 8.3:-69961702 | MS.gene051090:CDS |
| GCTGATTGGCGCGCTTTGAT+GGG | 0.447393 | 8.3:-69959872 | MS.gene051090:CDS |
| AGGATAATGCTATTGCTGAT+TGG | 0.490676 | 8.3:-69959886 | MS.gene051090:CDS |
| TTAGCCTTGCTTGCATCCGT+AGG | 0.497061 | 8.3:+69959848 | None:intergenic |
| CTGCATGTTCGTACTTCCAT+CGG | 0.505960 | 8.3:+69960532 | None:intergenic |
| ATTCTGATGAATCCAACAAA+AGG | 0.513129 | 8.3:+69961708 | None:intergenic |
| AACATTAGCGATCATAAAGC+CGG | 0.514278 | 8.3:-69960507 | MS.gene051090:CDS |
| GGTCATGTATTTAACAAGGC+TGG | 0.514757 | 8.3:+69960340 | None:intergenic |
| TAGCCTTGCTTGCATCCGTA+GGG | 0.535822 | 8.3:+69959849 | None:intergenic |
| ATAAAGCCGGATGGATTGCT+TGG | 0.546487 | 8.3:-69960494 | MS.gene051090:CDS |
| CAGTGGACCGGTGTTAGTCA+TGG | 0.550023 | 8.3:-69959918 | MS.gene051090:CDS |
| AGTTGCAGTTCTTCTACCGA+TGG | 0.552688 | 8.3:-69960548 | MS.gene051090:CDS |
| GCGCGCTTTGATGGGCCCTA+CGG | 0.555262 | 8.3:-69959864 | MS.gene051090:CDS |
| GGGCCCTACGGATGCAAGCA+AGG | 0.567906 | 8.3:-69959852 | MS.gene051090:CDS |
| CTAAGATTACTCACCCTCAC+AGG | 0.569339 | 8.3:-69959829 | MS.gene051090:intron |
| AAAGATTGTTCAACTTGATG+AGG | 0.570844 | 8.3:-69960411 | MS.gene051090:CDS |
| GTATGGTTTCAGCATTGTCA+AGG | 0.580768 | 8.3:-69960435 | MS.gene051090:CDS |
| TAGTTACCAAGCAATCCATC+CGG | 0.584541 | 8.3:+69960488 | None:intergenic |
| CATAACTATAATCAGTGGAC+CGG | 0.589528 | 8.3:-69959930 | MS.gene051090:intron |
| AACAGCATCAGAGCAAAATG+TGG | 0.589551 | 8.3:-69959731 | MS.gene051090:intron |
| GCCTTGTTAAATACATGACC+AGG | 0.593010 | 8.3:-69960337 | MS.gene051090:intron |
| TAGAAGTAAAATCATTGACC+TGG | 0.604841 | 8.3:+69959620 | None:intergenic |
| TCCAAAACCATGACTAACAC+CGG | 0.605331 | 8.3:+69959911 | None:intergenic |
| CTGATGAATCCAACAAAAGG+AGG | 0.619847 | 8.3:+69961711 | None:intergenic |
| ACCTGGTCATGTATTTAACA+AGG | 0.639489 | 8.3:+69960336 | None:intergenic |
| TTAGCGATCATAAAGCCGGA+TGG | 0.648445 | 8.3:-69960503 | MS.gene051090:CDS |
| GTAACATGCATGACCTGTGA+GGG | 0.731782 | 8.3:+69959816 | None:intergenic |
| AGTAACATGCATGACCTGTG+AGG | 0.780446 | 8.3:+69959815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTGAAATTTAATATTTT+TGG | - | chr8.3:69959961-69959980 | MS.gene051090:intron | 10.0% |
| !! | ATAGAATTAATAAACACATA+CGG | + | chr8.3:69960563-69960582 | None:intergenic | 15.0% |
| !! | CAACTTATATTTAAATACTA+CGG | + | chr8.3:69960420-69960439 | None:intergenic | 15.0% |
| !! | TTATTAATTCTATAGAAACG+CGG | - | chr8.3:69960570-69960589 | MS.gene051090:intron | 20.0% |
| !! | TTTATATTGTGGTAAAATGT+GGG | - | chr8.3:69961128-69961147 | MS.gene051090:intron | 20.0% |
| !!! | ACAACTTTTTCAAGATTTAT+AGG | - | chr8.3:69960607-69960626 | MS.gene051090:intron | 20.0% |
| !!! | TCTTTTACTAGTTAAATTTC+TGG | + | chr8.3:69960130-69960149 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGATTTATAGGTT+AGG | - | chr8.3:69960612-69960631 | MS.gene051090:intron | 20.0% |
| ! | AATATGATTAAACTGATCAG+TGG | + | chr8.3:69961326-69961345 | None:intergenic | 25.0% |
| ! | ACTAGTAAAAGAAATGACTT+TGG | - | chr8.3:69960138-69960157 | MS.gene051090:intron | 25.0% |
| ! | ACTTTCTATTATTCAAGCTT+AGG | + | chr8.3:69960455-69960474 | None:intergenic | 25.0% |
| ! | ATTCAAATTTATTCTTCTGC+TGG | - | chr8.3:69959886-69959905 | MS.gene051090:CDS | 25.0% |
| ! | CAGATTAATAACTGTTAAGT+AGG | - | chr8.3:69960183-69960202 | MS.gene051090:intron | 25.0% |
| ! | CTTTATATTGTGGTAAAATG+TGG | - | chr8.3:69961127-69961146 | MS.gene051090:intron | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | + | chr8.3:69960454-69960473 | None:intergenic | 25.0% |
| ! | GATGTATAAATGAAAATGCA+TGG | + | chr8.3:69960254-69960273 | None:intergenic | 25.0% |
| ! | TATATTTAAATACTACGGTC+CGG | + | chr8.3:69960415-69960434 | None:intergenic | 25.0% |
| ! | TATTTCCTAAAAGAAACTTG+AGG | - | chr8.3:69961225-69961244 | MS.gene051090:intron | 25.0% |
| ! | TTATTAATCTGATGCATGTA+AGG | + | chr8.3:69960174-69960193 | None:intergenic | 25.0% |
| !! | AAAAACCTCAAGTTTCTTTT+AGG | + | chr8.3:69961233-69961252 | None:intergenic | 25.0% |
| !! | CACATTTTACCACAATATAA+AGG | + | chr8.3:69961129-69961148 | None:intergenic | 25.0% |
| !! | TTACTAGTTAAATTTCTGGA+AGG | + | chr8.3:69960126-69960145 | None:intergenic | 25.0% |
| !!! | AAGAGAACAATTTTTGAGTA+TGG | - | chr8.3:69960896-69960915 | MS.gene051090:intron | 25.0% |
| !!! | ACAACCAAGGTTTTTAAAAA+AGG | + | chr8.3:69960707-69960726 | None:intergenic | 25.0% |
| !!! | ACCATGTACACAATTTTTTT+CGG | + | chr8.3:69961651-69961670 | None:intergenic | 25.0% |
| !!! | ATAAACAATTCTAGAGCTTA+TGG | + | chr8.3:69959818-69959837 | None:intergenic | 25.0% |
| !!! | CTGGTAAGTGTTTTTTTTTT+AGG | - | chr8.3:69959693-69959712 | MS.gene051090:CDS | 25.0% |
| !!! | GTTTTTATTTTATGTAGCTG+AGG | - | chr8.3:69961247-69961266 | MS.gene051090:intron | 25.0% |
| AAAGATTGTTCAACTTGATG+AGG | - | chr8.3:69960937-69960956 | MS.gene051090:intron | 30.0% | |
| AAGCTGAAACAAAAACAAGA+AGG | + | chr8.3:69959672-69959691 | None:intergenic | 30.0% | |
| ACCGAAAAAAATTGTGTACA+TGG | - | chr8.3:69961647-69961666 | MS.gene051090:intron | 30.0% | |
| ATTCTGATGAATCCAACAAA+AGG | + | chr8.3:69959643-69959662 | None:intergenic | 30.0% | |
| ATTTGCACAAGACAAAAGTT+GGG | - | chr8.3:69960297-69960316 | MS.gene051090:intron | 30.0% | |
| CTAATCAAACTTATTGTGCT+TGG | - | chr8.3:69961554-69961573 | MS.gene051090:intron | 30.0% | |
| CTCATAGTTTACTGATAAGT+GGG | - | chr8.3:69960325-69960344 | MS.gene051090:intron | 30.0% | |
| TAAAAGACTAGAAGACATGA+AGG | + | chr8.3:69961370-69961389 | None:intergenic | 30.0% | |
| TATTTGCACAAGACAAAAGT+TGG | - | chr8.3:69960296-69960315 | MS.gene051090:intron | 30.0% | |
| TCCAAACGAGCTTAATATTA+AGG | + | chr8.3:69959737-69959756 | None:intergenic | 30.0% | |
| TCCTTAATATTAAGCTCGTT+TGG | - | chr8.3:69959733-69959752 | MS.gene051090:intron | 30.0% | |
| TTTACAAGATTACCCTTGAA+CGG | + | chr8.3:69960392-69960411 | None:intergenic | 30.0% | |
| ! | ACTATACCGATCTTAATTTG+CGG | - | chr8.3:69961085-69961104 | MS.gene051090:intron | 30.0% |
| ! | TGCATAAAATCTTTTCACAG+TGG | + | chr8.3:69960963-69960982 | None:intergenic | 30.0% |
| AACATTAGCGATCATAAAGC+CGG | - | chr8.3:69960841-69960860 | MS.gene051090:intron | 35.0% | |
| ACCTGGTCATGTATTTAACA+AGG | + | chr8.3:69961015-69961034 | None:intergenic | 35.0% | |
| ACTATAGTCTATAGGATACC+TGG | + | chr8.3:69961032-69961051 | None:intergenic | 35.0% | |
| AGGATAATGCTATTGCTGAT+TGG | - | chr8.3:69961462-69961481 | MS.gene051090:intron | 35.0% | |
| ATCTCTCTTTGTGCAGATTT+GGG | + | chr8.3:69961683-69961702 | None:intergenic | 35.0% | |
| CAAGATAAGCAGAAGAAGAA+TGG | + | chr8.3:69960085-69960104 | None:intergenic | 35.0% | |
| CACTGTGAACCTTTATATTG+TGG | - | chr8.3:69961117-69961136 | MS.gene051090:intron | 35.0% | |
| CATAACTATAATCAGTGGAC+CGG | - | chr8.3:69961418-69961437 | MS.gene051090:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | - | chr8.3:69960324-69960343 | MS.gene051090:intron | 35.0% | |
| GTCAGAGATGTAAACACAAT+TGG | - | chr8.3:69960493-69960512 | MS.gene051090:CDS | 35.0% | |
| GTTGGATTCATCAGAATACT+TGG | - | chr8.3:69959646-69959665 | MS.gene051090:CDS | 35.0% | |
| TATCTCTCTTTGTGCAGATT+TGG | + | chr8.3:69961684-69961703 | None:intergenic | 35.0% | |
| TCAAGGGTAATCTTGTAAAC+CGG | - | chr8.3:69960393-69960412 | MS.gene051090:CDS | 35.0% | |
| TCTAGGCAACTATAGTCTAT+AGG | + | chr8.3:69961040-69961059 | None:intergenic | 35.0% | |
| TGGTAAAATGTGGGTAAATG+CGG | - | chr8.3:69961137-69961156 | MS.gene051090:intron | 35.0% | |
| TTCGCCATAACTATAATCAG+TGG | - | chr8.3:69961413-69961432 | MS.gene051090:intron | 35.0% | |
| ! | CTTAGCATCTTGTGTTTTCT+TGG | - | chr8.3:69960008-69960027 | MS.gene051090:intron | 35.0% |
| ! | GAGAGCTCTTTGAAGAAAAA+TGG | + | chr8.3:69961707-69961726 | None:intergenic | 35.0% |
| !! | AGCTTTACACTTGCTGTTAA+TGG | - | chr8.3:69961277-69961296 | MS.gene051090:intron | 35.0% |
| !!! | ATATTTTTGGCATCTGAGTG+AGG | - | chr8.3:69959974-69959993 | MS.gene051090:intron | 35.0% |
| !!! | GGGTCCTTTTTTAAAAACCT+TGG | - | chr8.3:69960700-69960719 | MS.gene051090:intron | 35.0% |
| !!! | TATTTTTGGCATCTGAGTGA+GGG | - | chr8.3:69959975-69959994 | MS.gene051090:intron | 35.0% |
| !!! | TTGTTTTTGTTTCAGCTTGC+TGG | - | chr8.3:69959674-69959693 | MS.gene051090:CDS | 35.0% |
| AACAGCATCAGAGCAAAATG+TGG | - | chr8.3:69961617-69961636 | MS.gene051090:intron | 40.0% | |
| ACATTACACACACACAACCA+AGG | + | chr8.3:69960720-69960739 | None:intergenic | 40.0% | |
| AGACTAGAAGACATGAAGGA+AGG | + | chr8.3:69961366-69961385 | None:intergenic | 40.0% | |
| AGTCTTCAACCGCAATATAG+CGG | + | chr8.3:69961193-69961212 | None:intergenic | 40.0% | |
| AGTGTCACAGTCAAATGCTT+CGG | - | chr8.3:69960673-69960692 | MS.gene051090:intron | 40.0% | |
| CACAAGACAAAAGTTGGGTA+TGG | - | chr8.3:69960302-69960321 | MS.gene051090:intron | 40.0% | |
| CGAAGCAAAAGAGGTGATTT+AGG | + | chr8.3:69961397-69961416 | None:intergenic | 40.0% | |
| CTGATGAATCCAACAAAAGG+AGG | + | chr8.3:69959640-69959659 | None:intergenic | 40.0% | |
| GAACACACAAGATTTGAGTG+CGG | + | chr8.3:69960526-69960545 | None:intergenic | 40.0% | |
| GGTCATGTATTTAACAAGGC+TGG | + | chr8.3:69961011-69961030 | None:intergenic | 40.0% | |
| GTATGGTTTCAGCATTGTCA+AGG | - | chr8.3:69960913-69960932 | MS.gene051090:intron | 40.0% | |
| TAGTTACCAAGCAATCCATC+CGG | + | chr8.3:69960863-69960882 | None:intergenic | 40.0% | |
| TAGTTATGGCGAAGCAAAAG+AGG | + | chr8.3:69961406-69961425 | None:intergenic | 40.0% | |
| TAGTTTACTGATAAGTGGGC+AGG | - | chr8.3:69960329-69960348 | MS.gene051090:intron | 40.0% | |
| TATCGAAGATAACAACGCGA+CGG | + | chr8.3:69960648-69960667 | None:intergenic | 40.0% | |
| TCCAAAACCATGACTAACAC+CGG | + | chr8.3:69961440-69961459 | None:intergenic | 40.0% | |
| ! | CGGTCCACTGATTATAGTTA+TGG | + | chr8.3:69961420-69961439 | None:intergenic | 40.0% |
| ! | GCCTTGTTAAATACATGACC+AGG | - | chr8.3:69961011-69961030 | MS.gene051090:intron | 40.0% |
| !! | CCTCTAAAACCGCTATATTG+CGG | - | chr8.3:69961181-69961200 | MS.gene051090:intron | 40.0% |
| !!! | GTTAGTCATGGTTTTGGAGA+AGG | - | chr8.3:69961442-69961461 | MS.gene051090:intron | 40.0% |
| AGACTCTTGTTGCATGATGG+TGG | - | chr8.3:69961057-69961076 | MS.gene051090:intron | 45.0% | |
| AGTAACATGCATGACCTGTG+AGG | + | chr8.3:69961536-69961555 | None:intergenic | 45.0% | |
| AGTTGCAGTTCTTCTACCGA+TGG | - | chr8.3:69960800-69960819 | MS.gene051090:intron | 45.0% | |
| CAAGATTTGAGTGCGGAGTT+TGG | + | chr8.3:69960519-69960538 | None:intergenic | 45.0% | |
| CCATCATGCAACAAGAGTCT+AGG | + | chr8.3:69961057-69961076 | None:intergenic | 45.0% | |
| CCGCAACCGCAAATTAAGAT+CGG | + | chr8.3:69961094-69961113 | None:intergenic | 45.0% | |
| CCTAGACTCTTGTTGCATGA+TGG | - | chr8.3:69961054-69961073 | MS.gene051090:intron | 45.0% | |
| CGGTAGAAGAACTGCAACTT+TGG | + | chr8.3:69960799-69960818 | None:intergenic | 45.0% | |
| CTAAGATTACTCACCCTCAC+AGG | - | chr8.3:69961519-69961538 | MS.gene051090:intron | 45.0% | |
| CTGCATGTTCGTACTTCCAT+CGG | + | chr8.3:69960819-69960838 | None:intergenic | 45.0% | |
| GTAACATGCATGACCTGTGA+GGG | + | chr8.3:69961535-69961554 | None:intergenic | 45.0% | |
| TTAGCGATCATAAAGCCGGA+TGG | - | chr8.3:69960845-69960864 | MS.gene051090:intron | 45.0% | |
| TTCTTCAAAGAGCTCTCTCC+AGG | - | chr8.3:69961710-69961729 | MS.gene051090:CDS | 45.0% | |
| ! | GCTTAAAAGTGCGCATCTTG+TGG | - | chr8.3:69960751-69960770 | MS.gene051090:intron | 45.0% |
| !! | ACCGGTGTTAGTCATGGTTT+TGG | - | chr8.3:69961436-69961455 | MS.gene051090:intron | 45.0% |
| !! | ATAAAGCCGGATGGATTGCT+TGG | - | chr8.3:69960854-69960873 | MS.gene051090:intron | 45.0% |
| !! | CCGATCTTAATTTGCGGTTG+CGG | - | chr8.3:69961091-69961110 | MS.gene051090:intron | 45.0% |
| !! | CCGCAATATAGCGGTTTTAG+AGG | + | chr8.3:69961184-69961203 | None:intergenic | 45.0% |
| ACAGTCAAATGCTTCGGTCG+CGG | - | chr8.3:69960679-69960698 | MS.gene051090:intron | 50.0% | |
| AGATTACCCTTGAACGGCAC+AGG | + | chr8.3:69960386-69960405 | None:intergenic | 50.0% | |
| ATTACCCTTGAACGGCACAG+GGG | + | chr8.3:69960384-69960403 | None:intergenic | 50.0% | |
| GATTACCCTTGAACGGCACA+GGG | + | chr8.3:69960385-69960404 | None:intergenic | 50.0% | |
| ! | TAGCCTTGCTTGCATCCGTA+GGG | + | chr8.3:69961502-69961521 | None:intergenic | 50.0% |
| !! | TTAGCCTTGCTTGCATCCGT+AGG | + | chr8.3:69961503-69961522 | None:intergenic | 50.0% |
| CAGTCAAATGCTTCGGTCGC+GGG | - | chr8.3:69960680-69960699 | MS.gene051090:intron | 55.0% | |
| GCTGATTGGCGCGCTTTGAT+GGG | - | chr8.3:69961476-69961495 | MS.gene051090:intron | 55.0% | |
| GGTATCCGCATCAGCAGTTG+TGG | + | chr8.3:69961163-69961182 | None:intergenic | 55.0% | |
| TTACCCTTGAACGGCACAGG+GGG | + | chr8.3:69960383-69960402 | None:intergenic | 55.0% | |
| ! | CAGTGGACCGGTGTTAGTCA+TGG | - | chr8.3:69961430-69961449 | MS.gene051090:intron | 55.0% |
| ! | TGCTGATTGGCGCGCTTTGA+TGG | - | chr8.3:69961475-69961494 | MS.gene051090:intron | 55.0% |
| GGGGGATTCACCTTCCACAC+CGG | + | chr8.3:69960364-69960383 | None:intergenic | 60.0% | |
| TACCCTTGAACGGCACAGGG+GGG | + | chr8.3:69960382-69960401 | None:intergenic | 60.0% | |
| TGCGGCCACAACTGCTGATG+CGG | - | chr8.3:69961155-69961174 | MS.gene051090:intron | 60.0% | |
| ! | AATCCCCCCTGTGCCGTTCA+AGG | - | chr8.3:69960376-69960395 | MS.gene051090:CDS | 60.0% |
| ! | ATCCCCCCTGTGCCGTTCAA+GGG | - | chr8.3:69960377-69960396 | MS.gene051090:CDS | 60.0% |
| AGTGGGCAGGTCGCTTGAGC+CGG | - | chr8.3:69960342-69960361 | MS.gene051090:CDS | 65.0% | |
| GGGCCCTACGGATGCAAGCA+AGG | - | chr8.3:69961496-69961515 | MS.gene051090:intron | 65.0% | |
| GTCGCTTGAGCCGGTGTGGA+AGG | - | chr8.3:69960351-69960370 | MS.gene051090:CDS | 65.0% | |
| ! | GCGCGCTTTGATGGGCCCTA+CGG | - | chr8.3:69961484-69961503 | MS.gene051090:intron | 65.0% |
| GCAGGTCGCTTGAGCCGGTG+TGG | - | chr8.3:69960347-69960366 | MS.gene051090:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 69959631 | 69961739 | 69959631 | ID=MS.gene051090 |
| chr8.3 | mRNA | 69959631 | 69961739 | 69959631 | ID=MS.gene051090.t1;Parent=MS.gene051090 |
| chr8.3 | exon | 69961675 | 69961739 | 69961675 | ID=MS.gene051090.t1.exon1;Parent=MS.gene051090.t1 |
| chr8.3 | CDS | 69961675 | 69961739 | 69961675 | ID=cds.MS.gene051090.t1;Parent=MS.gene051090.t1 |
| chr8.3 | exon | 69960338 | 69960568 | 69960338 | ID=MS.gene051090.t1.exon2;Parent=MS.gene051090.t1 |
| chr8.3 | CDS | 69960338 | 69960568 | 69960338 | ID=cds.MS.gene051090.t1;Parent=MS.gene051090.t1 |
| chr8.3 | exon | 69959830 | 69959937 | 69959830 | ID=MS.gene051090.t1.exon3;Parent=MS.gene051090.t1 |
| chr8.3 | CDS | 69959830 | 69959937 | 69959830 | ID=cds.MS.gene051090.t1;Parent=MS.gene051090.t1 |
| chr8.3 | exon | 69959631 | 69959748 | 69959631 | ID=MS.gene051090.t1.exon4;Parent=MS.gene051090.t1 |
| chr8.3 | CDS | 69959631 | 69959748 | 69959631 | ID=cds.MS.gene051090.t1;Parent=MS.gene051090.t1 |
| Gene Sequence |
| Protein sequence |
