Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055420.t1 | XP_013443870.1 | 100 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 8.20E-80 | 306.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055420.t1 | P47922 | 93.3 | 149 | 10 | 0 | 1 | 149 | 1 | 149 | 3.9e-78 | 292.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055420.t1 | A0A072TWL0 | 100.0 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 5.9e-80 | 306.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055420 | MS.gene74137 | 0.807438 | 5.06E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene89149 | MS.gene055420 | PPI |
MS.gene051090 | MS.gene055420 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055420.t1 | MTR_8g007235 | 100.000 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 3.91e-108 | 304 |
MS.gene055420.t1 | MTR_4g104030 | 64.865 | 148 | 51 | 1 | 3 | 149 | 83 | 230 | 1.50e-66 | 202 |
MS.gene055420.t1 | MTR_8g099450 | 59.184 | 147 | 59 | 1 | 3 | 148 | 85 | 231 | 3.65e-62 | 191 |
MS.gene055420.t1 | MTR_8g021233 | 32.292 | 96 | 65 | 0 | 3 | 98 | 72 | 167 | 2.44e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055420.t1 | AT4G09320 | 83.673 | 147 | 24 | 0 | 3 | 149 | 2 | 148 | 1.74e-91 | 262 |
MS.gene055420.t1 | AT5G63310 | 63.514 | 148 | 53 | 1 | 3 | 149 | 84 | 231 | 9.19e-67 | 202 |
MS.gene055420.t1 | AT4G11010 | 59.184 | 147 | 59 | 1 | 3 | 148 | 89 | 235 | 2.76e-62 | 191 |
MS.gene055420.t1 | AT4G23900 | 59.864 | 147 | 58 | 1 | 3 | 148 | 88 | 234 | 3.19e-62 | 191 |
MS.gene055420.t1 | AT4G23895 | 59.864 | 147 | 58 | 1 | 3 | 148 | 318 | 464 | 5.58e-60 | 192 |
MS.gene055420.t1 | AT1G17410 | 35.556 | 135 | 84 | 1 | 3 | 134 | 33 | 167 | 1.42e-22 | 88.6 |
MS.gene055420.t1 | AT1G17410 | 35.385 | 130 | 81 | 1 | 8 | 134 | 1 | 130 | 2.26e-21 | 84.3 |
MS.gene055420.t1 | AT1G17410 | 34.066 | 91 | 60 | 0 | 8 | 98 | 1 | 91 | 3.85e-12 | 60.1 |
Find 45 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGCGCCAACAAGGAAAT+TGG | 0.280936 | 8.1:+86435737 | MS.gene055420:CDS |
CCCTGTTGTTGCCATGATTT+GGG | 0.284074 | 8.1:+86435117 | MS.gene055420:CDS |
GCCCTGTTGTTGCCATGATT+TGG | 0.311298 | 8.1:+86435116 | MS.gene055420:CDS |
CCACAAACCAATTTCCTTGT+TGG | 0.361994 | 8.1:-86435744 | None:intergenic |
TATCAGCAGGTTTGAGAAGA+AGG | 0.368456 | 8.1:+86434287 | MS.gene055420:CDS |
TCCCAAATCATGGCAACAAC+AGG | 0.371495 | 8.1:-86435118 | None:intergenic |
GGTGACTTTGCTGTTGAGAT+TGG | 0.374163 | 8.1:+86435220 | MS.gene055420:CDS |
TGCCATGCAGCAGGTCCCTC+AGG | 0.393989 | 8.1:-86435770 | None:intergenic |
AGGCTGCTTTGCCATGCAGC+AGG | 0.417205 | 8.1:-86435779 | None:intergenic |
ATTCTTTCCTTCCCAAATCA+TGG | 0.433603 | 8.1:-86435128 | None:intergenic |
GCCTTTCTTCAGCGGATTGG+TGG | 0.441557 | 8.1:+86435078 | MS.gene055420:CDS |
ACAACTGGCAGAAAGATTAT+TGG | 0.443417 | 8.1:+86435157 | MS.gene055420:CDS |
CTCGGATTGAGCAGGGTTTG+TGG | 0.447088 | 8.1:-86435182 | None:intergenic |
CCAACAAGGAAATTGGTTTG+TGG | 0.455431 | 8.1:+86435744 | MS.gene055420:CDS |
AAGTCACCACGAATAGTTCC+AGG | 0.456893 | 8.1:-86435205 | None:intergenic |
GTGACTTTGCTGTTGAGATT+GGG | 0.461283 | 8.1:+86435221 | MS.gene055420:CDS |
GGAAAGAATGTTGTGACAAC+TGG | 0.461299 | 8.1:+86435142 | MS.gene055420:CDS |
GTTCCAGGCTCGGATTGAGC+AGG | 0.463625 | 8.1:-86435190 | None:intergenic |
AACCCTGCTCAATCCGAGCC+TGG | 0.477287 | 8.1:+86435187 | MS.gene055420:CDS |
AAAGCCTTTCTTCAGCGGAT+TGG | 0.477724 | 8.1:+86435075 | MS.gene055420:CDS |
TCCGAGCCTGGAACTATTCG+TGG | 0.486706 | 8.1:+86435199 | MS.gene055420:CDS |
TCCACCAATCCGCTGAAGAA+AGG | 0.496234 | 8.1:-86435079 | None:intergenic |
AGTCCTCTTTGAACACCATC+AGG | 0.504010 | 8.1:-86433632 | None:intergenic |
TTGGTGGAATACATTGTCTC+TGG | 0.506765 | 8.1:+86435094 | MS.gene055420:CDS |
AAGAAGGGTTTCTACTTGAA+AGG | 0.507643 | 8.1:+86434303 | MS.gene055420:CDS |
TCCCTGAGGGACCTGCTGCA+TGG | 0.514590 | 8.1:+86435768 | MS.gene055420:CDS |
AGGTTTGAAATTCTTGAATG+TGG | 0.522184 | 8.1:+86435012 | MS.gene055420:intron |
TCTGCAAAGCCTTTCTTCAG+CGG | 0.530736 | 8.1:+86435070 | MS.gene055420:CDS |
ATCAGCAGGTTTGAGAAGAA+GGG | 0.548918 | 8.1:+86434288 | MS.gene055420:CDS |
ATTGGTTTGTGGTTCCCTGA+GGG | 0.548939 | 8.1:+86435755 | MS.gene055420:CDS |
ACCACGAATAGTTCCAGGCT+CGG | 0.560343 | 8.1:-86435200 | None:intergenic |
TGATGCAGGAACGTTATTCA+CGG | 0.563039 | 8.1:+86435701 | MS.gene055420:intron |
GGCAAAGCAGCCTCCACTCG+TGG | 0.563561 | 8.1:+86435789 | MS.gene055420:CDS |
TTCCAGGCTCGGATTGAGCA+GGG | 0.575170 | 8.1:-86435189 | None:intergenic |
GCCATGCAGCAGGTCCCTCA+GGG | 0.586568 | 8.1:-86435769 | None:intergenic |
AGGTTGGTGAGATTATCAGC+AGG | 0.589081 | 8.1:+86434274 | MS.gene055420:intron |
TTCTGTTGAAAGCGCCAACA+AGG | 0.589117 | 8.1:+86435730 | MS.gene055420:CDS |
TTCATCATGATCAAGCCTGA+TGG | 0.593169 | 8.1:+86433617 | MS.gene055420:CDS |
ACTTTGCTGTTGAGATTGGG+AGG | 0.598896 | 8.1:+86435224 | MS.gene055420:CDS |
AAGCCTGATGGTGTTCAAAG+AGG | 0.613792 | 8.1:+86433629 | MS.gene055420:CDS |
ACTCGTAAATCCACGAGTGG+AGG | 0.617859 | 8.1:-86435799 | None:intergenic |
GTTGTTGCCATGATTTGGGA+AGG | 0.625191 | 8.1:+86435121 | MS.gene055420:CDS |
CCCAAATCATGGCAACAACA+GGG | 0.626477 | 8.1:-86435117 | None:intergenic |
AATTGGTTTGTGGTTCCCTG+AGG | 0.646541 | 8.1:+86435754 | MS.gene055420:CDS |
TTTACTCGTAAATCCACGAG+TGG | 0.672996 | 8.1:-86435802 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAAAAATATTTGAAGT+GGG | + | chr8.1:86434053-86434072 | MS.gene055420:intron | 10.0% |
!!! | TTTTAAAAAAATATTTGAAG+TGG | + | chr8.1:86434052-86434071 | MS.gene055420:intron | 10.0% |
!!! | TTTTTTTATATATTTCATGT+TGG | + | chr8.1:86433987-86434006 | MS.gene055420:intron | 10.0% |
!!! | AAAAAAAACGAAATTTTGAT+AGG | - | chr8.1:86433804-86433823 | None:intergenic | 15.0% |
!!! | AATTTTGTAGATATTTGATA+TGG | + | chr8.1:86434594-86434613 | MS.gene055420:intron | 15.0% |
!!! | ATTCTGGATTTTAAAATATT+TGG | + | chr8.1:86434917-86434936 | MS.gene055420:intron | 15.0% |
!! | CTTAATAAATCATCCTTATT+TGG | + | chr8.1:86433751-86433770 | MS.gene055420:intron | 20.0% |
!! | TAAAATCAAGTATTAAGAAC+AGG | - | chr8.1:86435294-86435313 | None:intergenic | 20.0% |
!! | TTTAGCTAAATTTATTTGTG+TGG | + | chr8.1:86434176-86434195 | MS.gene055420:intron | 20.0% |
!!! | TATTTTGAAATTCAAACTTG+AGG | + | chr8.1:86434820-86434839 | MS.gene055420:intron | 20.0% |
!!! | TGAATCAATTTTTTTAGCTA+AGG | + | chr8.1:86433891-86433910 | MS.gene055420:intron | 20.0% |
!!! | TGATACTTTTAAAACTTTTC+AGG | + | chr8.1:86434891-86434910 | MS.gene055420:intron | 20.0% |
!!! | TTTGTTTTGAACAAATATCA+AGG | - | chr8.1:86435336-86435355 | None:intergenic | 20.0% |
!!! | TTTTAATTTACTATTGATGC+AGG | + | chr8.1:86435687-86435706 | MS.gene055420:intron | 20.0% |
! | AAAAATGCCATTGTTTGATT+TGG | + | chr8.1:86435551-86435570 | MS.gene055420:intron | 25.0% |
! | AAATAGATGATGTTTGATGT+TGG | - | chr8.1:86435505-86435524 | None:intergenic | 25.0% |
! | AACTAAAAGTTAGTATGCTA+TGG | - | chr8.1:86434333-86434352 | None:intergenic | 25.0% |
! | AATAGATGATGTTTGATGTT+GGG | - | chr8.1:86435504-86435523 | None:intergenic | 25.0% |
! | ACTAAAAGTTAGTATGCTAT+GGG | - | chr8.1:86434332-86434351 | None:intergenic | 25.0% |
! | ATACTTGACTGTTTAGAAAA+TGG | + | chr8.1:86434113-86434132 | MS.gene055420:intron | 25.0% |
! | CAGCTAATAATAACCAAATA+AGG | - | chr8.1:86433767-86433786 | None:intergenic | 25.0% |
! | GAATTGTGAATCAAAAAAAG+AGG | - | chr8.1:86433679-86433698 | None:intergenic | 25.0% |
! | GTTGTTATGAGTTTGTAAAT+TGG | + | chr8.1:86433925-86433944 | MS.gene055420:intron | 25.0% |
! | GTTTGAATTTCAAAATAACC+AGG | - | chr8.1:86434817-86434836 | None:intergenic | 25.0% |
! | TACTTGACTGTTTAGAAAAT+GGG | + | chr8.1:86434114-86434133 | MS.gene055420:intron | 25.0% |
! | TCATGCTATGAATTAGTAAA+AGG | - | chr8.1:86434540-86434559 | None:intergenic | 25.0% |
! | TGTTTGACTGTTTAGAAATT+GGG | + | chr8.1:86433847-86433866 | MS.gene055420:intron | 25.0% |
! | TTGTTTGACTGTTTAGAAAT+TGG | + | chr8.1:86433846-86433865 | MS.gene055420:intron | 25.0% |
!! | TTACATAGTCTTACTATTGT+AGG | + | chr8.1:86435260-86435279 | MS.gene055420:intron | 25.0% |
!!! | GAAAAATTTGTTTTTCAGGT+TGG | + | chr8.1:86434258-86434277 | MS.gene055420:intron | 25.0% |
!!! | GACTGAAAAATTTGTTTTTC+AGG | + | chr8.1:86434254-86434273 | MS.gene055420:intron | 25.0% |
!!! | GAGATTACTTGTTGATTTTT+AGG | + | chr8.1:86434011-86434030 | MS.gene055420:intron | 25.0% |
!!! | GATTTTGAAATTATTCGTGA+TGG | + | chr8.1:86434964-86434983 | MS.gene055420:intron | 25.0% |
!!! | GTTGTTTTGAATTTGTAGAT+TGG | + | chr8.1:86434198-86434217 | MS.gene055420:intron | 25.0% |
AAGTATCATTGTTAGACATG+AGG | - | chr8.1:86435388-86435407 | None:intergenic | 30.0% | |
CAAACATGAAATCGTTGATA+TGG | + | chr8.1:86434497-86434516 | MS.gene055420:intron | 30.0% | |
CTAACAATCACTCACTTATT+CGG | - | chr8.1:86434735-86434754 | None:intergenic | 30.0% | |
TACACTTCAAAACCAACATT+TGG | - | chr8.1:86434855-86434874 | None:intergenic | 30.0% | |
TATGCAAGATTCCAAAGTTT+GGG | + | chr8.1:86434695-86434714 | MS.gene055420:intron | 30.0% | |
TCAATAAGCACCTATTAGTA+AGG | - | chr8.1:86435455-86435474 | None:intergenic | 30.0% | |
TTATGCAAGATTCCAAAGTT+TGG | + | chr8.1:86434694-86434713 | MS.gene055420:intron | 30.0% | |
TTCAAAACCAACATTTGGAA+AGG | - | chr8.1:86434850-86434869 | None:intergenic | 30.0% | |
! | AAAGTTTGGTAATTTCTCAC+TGG | + | chr8.1:86433963-86433982 | MS.gene055420:intron | 30.0% |
! | AGGTTTGAAATTCTTGAATG+TGG | + | chr8.1:86435012-86435031 | MS.gene055420:intron | 30.0% |
! | CTTGATTTTACTATTCCTCA+TGG | + | chr8.1:86435304-86435323 | MS.gene055420:intron | 30.0% |
! | TAGAGTTTATTTGCTGAACT+TGG | + | chr8.1:86435639-86435658 | MS.gene055420:intron | 30.0% |
! | TTGATTGACTCAAACATCAA+AGG | - | chr8.1:86435363-86435382 | None:intergenic | 30.0% |
!! | AAATTGGGTTGTTGATAGTT+TGG | + | chr8.1:86433862-86433881 | MS.gene055420:intron | 30.0% |
!! | AGAGCACTTTTGATTAGTTA+AGG | - | chr8.1:86435620-86435639 | None:intergenic | 30.0% |
!! | ATAAAACTTAGAAAAGTGCC+TGG | + | chr8.1:86435426-86435445 | MS.gene055420:intron | 30.0% |
!! | CTTTGGAATCTTGCATAAAA+TGG | - | chr8.1:86434692-86434711 | None:intergenic | 30.0% |
!! | GAGCACTTTTGATTAGTTAA+GGG | - | chr8.1:86435619-86435638 | None:intergenic | 30.0% |
!! | TAGAAAATGGGTTGATTTGT+TGG | + | chr8.1:86434126-86434145 | MS.gene055420:intron | 30.0% |
!! | TTTTAGCTAAGGCTATTTGT+GGG | + | chr8.1:86433902-86433921 | MS.gene055420:intron | 30.0% |
!!! | AAAACTTTTCAGGTCAATTC+TGG | + | chr8.1:86434901-86434920 | MS.gene055420:intron | 30.0% |
!!! | TTTTTAGCTAAGGCTATTTG+TGG | + | chr8.1:86433901-86433920 | MS.gene055420:intron | 30.0% |
AAAACAACAGGATTCAGACT+TGG | - | chr8.1:86434367-86434386 | None:intergenic | 35.0% | |
AAGAAGGGTTTCTACTTGAA+AGG | + | chr8.1:86434303-86434322 | MS.gene055420:CDS | 35.0% | |
ACAACTGGCAGAAAGATTAT+TGG | + | chr8.1:86435157-86435176 | MS.gene055420:CDS | 35.0% | |
ACGTACTAACATATCAACTG+AGG | - | chr8.1:86434781-86434800 | None:intergenic | 35.0% | |
ATTCTTTCCTTCCCAAATCA+TGG | - | chr8.1:86435131-86435150 | None:intergenic | 35.0% | |
CGAGTTTCCAAATCAAACAA+TGG | - | chr8.1:86435561-86435580 | None:intergenic | 35.0% | |
CTTGTTTGATGCTGAAAGTT+TGG | + | chr8.1:86434223-86434242 | MS.gene055420:intron | 35.0% | |
GCTTGTTTGATCTGAAAGTT+TGG | + | chr8.1:86433949-86433968 | MS.gene055420:intron | 35.0% | |
TACGTCACTAATTCATAACC+TGG | + | chr8.1:86434796-86434815 | MS.gene055420:intron | 35.0% | |
TGATCAGAGAACAAAACAAC+AGG | - | chr8.1:86434379-86434398 | None:intergenic | 35.0% | |
TTTAGCTAAGGCTATTTGTG+GGG | + | chr8.1:86433903-86433922 | MS.gene055420:intron | 35.0% | |
! | AAAAAAAGAGGTGTGAGAGA+AGG | - | chr8.1:86433667-86433686 | None:intergenic | 35.0% |
! | AAAAAAGAGGTGTGAGAGAA+GGG | - | chr8.1:86433666-86433685 | None:intergenic | 35.0% |
!!! | CTGAACTTGGTTTTAAGTTG+CGG | + | chr8.1:86435652-86435671 | MS.gene055420:intron | 35.0% |
AGGTCTTCCTTTCCAAATGT+TGG | + | chr8.1:86434840-86434859 | MS.gene055420:intron | 40.0% | |
ATATCAAGGTGACTTCCATG+AGG | - | chr8.1:86435322-86435341 | None:intergenic | 40.0% | |
ATCAGCAGGTTTGAGAAGAA+GGG | + | chr8.1:86434288-86434307 | MS.gene055420:CDS | 40.0% | |
ATTAGTTAAGGGACAGAGCT+TGG | - | chr8.1:86435608-86435627 | None:intergenic | 40.0% | |
CCACAAACCAATTTCCTTGT+TGG | - | chr8.1:86435747-86435766 | None:intergenic | 40.0% | |
GGAAAGAATGTTGTGACAAC+TGG | + | chr8.1:86435142-86435161 | MS.gene055420:CDS | 40.0% | |
TATCAGCAGGTTTGAGAAGA+AGG | + | chr8.1:86434287-86434306 | MS.gene055420:CDS | 40.0% | |
TGATGCAGGAACGTTATTCA+CGG | + | chr8.1:86435701-86435720 | MS.gene055420:intron | 40.0% | |
TGGTGAATGATTCTTGTGAC+TGG | + | chr8.1:86434984-86435003 | MS.gene055420:intron | 40.0% | |
TTCATCATGATCAAGCCTGA+TGG | + | chr8.1:86433617-86433636 | MS.gene055420:CDS | 40.0% | |
TTGGTGGAATACATTGTCTC+TGG | + | chr8.1:86435094-86435113 | MS.gene055420:CDS | 40.0% | |
!! | CCAACAAGGAAATTGGTTTG+TGG | + | chr8.1:86435744-86435763 | MS.gene055420:CDS | 40.0% |
!! | GTGACTTTGCTGTTGAGATT+GGG | + | chr8.1:86435221-86435240 | MS.gene055420:CDS | 40.0% |
!! | TGGGTTGTTGATAGTTTGGT+TGG | + | chr8.1:86433866-86433885 | MS.gene055420:intron | 40.0% |
AAAGCCTTTCTTCAGCGGAT+TGG | + | chr8.1:86435075-86435094 | MS.gene055420:CDS | 45.0% | |
AACCCTCCCACTCGTTTATT+GGG | + | chr8.1:86434648-86434667 | MS.gene055420:intron | 45.0% | |
AACTCGTGGATCCCAAACTT+TGG | - | chr8.1:86434709-86434728 | None:intergenic | 45.0% | |
AAGTCACCACGAATAGTTCC+AGG | - | chr8.1:86435208-86435227 | None:intergenic | 45.0% | |
AGTCCTCTTTGAACACCATC+AGG | - | chr8.1:86433635-86433654 | None:intergenic | 45.0% | |
CACCTATTAGTAAGGATGCC+AGG | - | chr8.1:86435447-86435466 | None:intergenic | 45.0% | |
CCCAAATCATGGCAACAACA+GGG | - | chr8.1:86435120-86435139 | None:intergenic | 45.0% | |
CCCTGTTGTTGCCATGATTT+GGG | + | chr8.1:86435117-86435136 | MS.gene055420:CDS | 45.0% | |
GATTCTTGTGACTGGACTTC+AGG | + | chr8.1:86434992-86435011 | MS.gene055420:intron | 45.0% | |
GCTTCACCCAATAAACGAGT+GGG | - | chr8.1:86434657-86434676 | None:intergenic | 45.0% | |
TAACCCTCCCACTCGTTTAT+TGG | + | chr8.1:86434647-86434666 | MS.gene055420:intron | 45.0% | |
TCCCAAATCATGGCAACAAC+AGG | - | chr8.1:86435121-86435140 | None:intergenic | 45.0% | |
TCTGCAAAGCCTTTCTTCAG+CGG | + | chr8.1:86435070-86435089 | MS.gene055420:CDS | 45.0% | |
TGCCTGGCATCCTTACTAAT+AGG | + | chr8.1:86435442-86435461 | MS.gene055420:intron | 45.0% | |
TGCTTCACCCAATAAACGAG+TGG | - | chr8.1:86434658-86434677 | None:intergenic | 45.0% | |
! | AAGCCTGATGGTGTTCAAAG+AGG | + | chr8.1:86433629-86433648 | MS.gene055420:CDS | 45.0% |
! | CACTTATTCGGTGAAACTCG+TGG | - | chr8.1:86434723-86434742 | None:intergenic | 45.0% |
! | GTTGTTGCCATGATTTGGGA+AGG | + | chr8.1:86435121-86435140 | MS.gene055420:CDS | 45.0% |
!! | AATTGGTTTGTGGTTCCCTG+AGG | + | chr8.1:86435754-86435773 | MS.gene055420:CDS | 45.0% |
!! | ACTTTGCTGTTGAGATTGGG+AGG | + | chr8.1:86435224-86435243 | MS.gene055420:CDS | 45.0% |
!! | AGGTTGGTGAGATTATCAGC+AGG | + | chr8.1:86434274-86434293 | MS.gene055420:intron | 45.0% |
!! | ATTGGTTTGTGGTTCCCTGA+GGG | + | chr8.1:86435755-86435774 | MS.gene055420:CDS | 45.0% |
!! | GAAAGCGCCAACAAGGAAAT+TGG | + | chr8.1:86435737-86435756 | MS.gene055420:CDS | 45.0% |
!! | GGTGACTTTGCTGTTGAGAT+TGG | + | chr8.1:86435220-86435239 | MS.gene055420:CDS | 45.0% |
!! | TTCTGTTGAAAGCGCCAACA+AGG | + | chr8.1:86435730-86435749 | MS.gene055420:CDS | 45.0% |
!!! | CTTGGTTTTAAGTTGCGGAG+TGG | + | chr8.1:86435657-86435676 | MS.gene055420:intron | 45.0% |
AAACGAGTGGGAGGGTTAGA+TGG | - | chr8.1:86434645-86434664 | None:intergenic | 50.0% | |
ACCACGAATAGTTCCAGGCT+CGG | - | chr8.1:86435203-86435222 | None:intergenic | 50.0% | |
ACTCGTAAATCCACGAGTGG+AGG | - | chr8.1:86435802-86435821 | None:intergenic | 50.0% | |
CACCCAATAAACGAGTGGGA+GGG | - | chr8.1:86434653-86434672 | None:intergenic | 50.0% | |
GCCCTGTTGTTGCCATGATT+TGG | + | chr8.1:86435116-86435135 | MS.gene055420:CDS | 50.0% | |
TCACCCAATAAACGAGTGGG+AGG | - | chr8.1:86434654-86434673 | None:intergenic | 50.0% | |
TCCACCAATCCGCTGAAGAA+AGG | - | chr8.1:86435082-86435101 | None:intergenic | 50.0% | |
CTCGGATTGAGCAGGGTTTG+TGG | - | chr8.1:86435185-86435204 | None:intergenic | 55.0% | |
GGGAGGGTTAGATGGAGTGT+TGG | - | chr8.1:86434637-86434656 | None:intergenic | 55.0% | |
TCCGAGCCTGGAACTATTCG+TGG | + | chr8.1:86435199-86435218 | MS.gene055420:CDS | 55.0% | |
TTCCAGGCTCGGATTGAGCA+GGG | - | chr8.1:86435192-86435211 | None:intergenic | 55.0% | |
!! | GCCTTTCTTCAGCGGATTGG+TGG | + | chr8.1:86435078-86435097 | MS.gene055420:CDS | 55.0% |
AACCCTGCTCAATCCGAGCC+TGG | + | chr8.1:86435187-86435206 | MS.gene055420:CDS | 60.0% | |
GTTCCAGGCTCGGATTGAGC+AGG | - | chr8.1:86435193-86435212 | None:intergenic | 60.0% | |
! | AGGCTGCTTTGCCATGCAGC+AGG | - | chr8.1:86435782-86435801 | None:intergenic | 60.0% |
GCCATGCAGCAGGTCCCTCA+GGG | - | chr8.1:86435772-86435791 | None:intergenic | 65.0% | |
GGCAAAGCAGCCTCCACTCG+TGG | + | chr8.1:86435789-86435808 | MS.gene055420:CDS | 65.0% | |
TCCCTGAGGGACCTGCTGCA+TGG | + | chr8.1:86435768-86435787 | MS.gene055420:CDS | 65.0% | |
TGCCATGCAGCAGGTCCCTC+AGG | - | chr8.1:86435773-86435792 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 86433602 | 86435823 | 86433602 | ID=MS.gene055420 |
chr8.1 | mRNA | 86433602 | 86435823 | 86433602 | ID=MS.gene055420.t1;Parent=MS.gene055420 |
chr8.1 | exon | 86433602 | 86433655 | 86433602 | ID=MS.gene055420.t1.exon1;Parent=MS.gene055420.t1 |
chr8.1 | CDS | 86433602 | 86433655 | 86433602 | ID=cds.MS.gene055420.t1;Parent=MS.gene055420.t1 |
chr8.1 | exon | 86434276 | 86434324 | 86434276 | ID=MS.gene055420.t1.exon2;Parent=MS.gene055420.t1 |
chr8.1 | CDS | 86434276 | 86434324 | 86434276 | ID=cds.MS.gene055420.t1;Parent=MS.gene055420.t1 |
chr8.1 | exon | 86435014 | 86435245 | 86435014 | ID=MS.gene055420.t1.exon3;Parent=MS.gene055420.t1 |
chr8.1 | CDS | 86435014 | 86435245 | 86435014 | ID=cds.MS.gene055420.t1;Parent=MS.gene055420.t1 |
chr8.1 | exon | 86435709 | 86435823 | 86435709 | ID=MS.gene055420.t1.exon4;Parent=MS.gene055420.t1 |
chr8.1 | CDS | 86435709 | 86435823 | 86435709 | ID=cds.MS.gene055420.t1;Parent=MS.gene055420.t1 |
Gene Sequence |
Protein sequence |