Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89149.t1 | XP_024627600.1 | 93.6 | 171 | 11 | 0 | 1 | 171 | 1 | 171 | 2.80E-87 | 331.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89149.t1 | Q6NLG3 | 67.9 | 134 | 43 | 0 | 39 | 172 | 1 | 134 | 7.5e-49 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89149.t1 | A0A396GLG2 | 93.6 | 171 | 11 | 0 | 1 | 171 | 1 | 171 | 2.0e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051090 | MS.gene89149 | 0.879422 | 1.26E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89149 | MS.gene022630 | PPI |
| MS.gene89149 | MS.gene99162 | PPI |
| MS.gene89149 | MS.gene055420 | PPI |
| MS.gene037854 | MS.gene89149 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89149.t1 | MTR_8g021233 | 93.333 | 135 | 9 | 0 | 1 | 135 | 39 | 173 | 1.23e-90 | 263 |
| MS.gene89149.t1 | MTR_8g007235 | 34.074 | 135 | 86 | 1 | 34 | 168 | 3 | 134 | 7.62e-24 | 91.7 |
| MS.gene89149.t1 | MTR_4g104030 | 32.847 | 137 | 89 | 1 | 32 | 168 | 81 | 214 | 2.65e-22 | 89.7 |
| MS.gene89149.t1 | MTR_8g099450 | 31.159 | 138 | 92 | 1 | 30 | 167 | 81 | 215 | 9.41e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89149.t1 | AT1G17410 | 65.972 | 144 | 49 | 0 | 29 | 172 | 28 | 171 | 2.21e-69 | 208 |
| MS.gene89149.t1 | AT1G17410 | 67.910 | 134 | 43 | 0 | 39 | 172 | 1 | 134 | 3.55e-66 | 199 |
| MS.gene89149.t1 | AT1G17410 | 67.708 | 96 | 31 | 0 | 39 | 134 | 1 | 96 | 1.36e-44 | 144 |
| MS.gene89149.t1 | AT5G63310 | 36.496 | 137 | 84 | 1 | 32 | 168 | 82 | 215 | 7.43e-26 | 99.0 |
| MS.gene89149.t1 | AT4G09320 | 33.582 | 134 | 86 | 1 | 33 | 166 | 1 | 131 | 4.76e-24 | 92.4 |
| MS.gene89149.t1 | AT4G11010 | 32.609 | 138 | 90 | 1 | 30 | 167 | 85 | 219 | 1.49e-21 | 88.2 |
| MS.gene89149.t1 | AT4G23900 | 29.878 | 164 | 111 | 2 | 5 | 167 | 58 | 218 | 1.22e-20 | 85.5 |
| MS.gene89149.t1 | AT4G23895 | 29.878 | 164 | 111 | 2 | 5 | 167 | 288 | 448 | 1.38e-19 | 85.1 |
Find 33 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTCTTTGTGCAGATT+TGG | 0.258721 | 8.1:-78100252 | None:intergenic |
| TGCTGATTGGCGCGCTTTGA+TGG | 0.267455 | 8.1:+78100046 | MS.gene89149:CDS |
| ATCTCTCTTTGTGCAGATTT+GGG | 0.271587 | 8.1:-78100251 | None:intergenic |
| ACCGGTGTTAGTCATGGTTT+TGG | 0.320603 | 8.1:+78100007 | MS.gene89149:CDS |
| TTCTTCAAAGAGCTCTCTCC+AGG | 0.402768 | 8.1:+78100281 | MS.gene89149:CDS |
| GTTGGATTCATCAGAATACT+TGG | 0.436732 | 8.1:+78098238 | MS.gene89149:CDS |
| GCTGATTGGCGCGCTTTGAT+GGG | 0.447393 | 8.1:+78100047 | MS.gene89149:CDS |
| AGGATAATGCTATTGCTGAT+TGG | 0.490676 | 8.1:+78100033 | MS.gene89149:CDS |
| TTAGCCTTGCTTGCATCCGT+AGG | 0.497061 | 8.1:-78100071 | None:intergenic |
| CTGCATGTTCGTACTTCCAT+CGG | 0.505960 | 8.1:-78099387 | None:intergenic |
| ATTCTGATGAATCCAACAAA+AGG | 0.513129 | 8.1:-78098232 | None:intergenic |
| AACATTAGCGATCATAAAGC+CGG | 0.514278 | 8.1:+78099412 | MS.gene89149:CDS |
| GGTCATGTATTTAACAAGGC+TGG | 0.514757 | 8.1:-78099579 | None:intergenic |
| TAGCCTTGCTTGCATCCGTA+GGG | 0.535822 | 8.1:-78100070 | None:intergenic |
| ATAAAGCCGGATGGATTGCT+TGG | 0.546487 | 8.1:+78099425 | MS.gene89149:CDS |
| CAGTGGACCGGTGTTAGTCA+TGG | 0.550023 | 8.1:+78100001 | MS.gene89149:intron |
| AGTTGCAGTTCTTCTACCGA+TGG | 0.552688 | 8.1:+78099371 | MS.gene89149:intron |
| GCGCGCTTTGATGGGCCCTA+CGG | 0.555262 | 8.1:+78100055 | MS.gene89149:CDS |
| GGGCCCTACGGATGCAAGCA+AGG | 0.567906 | 8.1:+78100067 | MS.gene89149:CDS |
| CTAAGATTACTCACCCTCAC+AGG | 0.569339 | 8.1:+78100090 | MS.gene89149:CDS |
| AAAGATTGTTCAACTTGATG+AGG | 0.570844 | 8.1:+78099508 | MS.gene89149:CDS |
| GTATGGTTTCAGCATTGTCA+AGG | 0.580768 | 8.1:+78099484 | MS.gene89149:CDS |
| TAGTTACCAAGCAATCCATC+CGG | 0.584541 | 8.1:-78099431 | None:intergenic |
| CATAACTATAATCAGTGGAC+CGG | 0.589528 | 8.1:+78099989 | MS.gene89149:intron |
| AACAGCATCAGAGCAAAATG+TGG | 0.589551 | 8.1:+78100188 | MS.gene89149:intron |
| GCCTTGTTAAATACATGACC+AGG | 0.593010 | 8.1:+78099582 | MS.gene89149:CDS |
| TAGAAGTAAAATCATTGACC+TGG | 0.604841 | 8.1:-78100299 | None:intergenic |
| TCCAAAACCATGACTAACAC+CGG | 0.605331 | 8.1:-78100008 | None:intergenic |
| CTGATGAATCCAACAAAAGG+AGG | 0.619847 | 8.1:-78098229 | None:intergenic |
| ACCTGGTCATGTATTTAACA+AGG | 0.639489 | 8.1:-78099583 | None:intergenic |
| TTAGCGATCATAAAGCCGGA+TGG | 0.648445 | 8.1:+78099416 | MS.gene89149:CDS |
| GTAACATGCATGACCTGTGA+GGG | 0.731782 | 8.1:-78100103 | None:intergenic |
| AGTAACATGCATGACCTGTG+AGG | 0.780446 | 8.1:-78100104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTGAAATTTAATATTTT+TGG | + | chr8.1:78098556-78098575 | MS.gene89149:intron | 10.0% |
| !! | ATAGAATTAATAAACACATA+CGG | - | chr8.1:78099134-78099153 | None:intergenic | 15.0% |
| !! | CAACTTATATTTAAATACTA+CGG | - | chr8.1:78098991-78099010 | None:intergenic | 15.0% |
| !! | TTATTAATTCTATAGAAACG+CGG | + | chr8.1:78099141-78099160 | MS.gene89149:intron | 20.0% |
| !! | TTTATATTGTGGTAAAATGT+GGG | + | chr8.1:78099699-78099718 | MS.gene89149:intron | 20.0% |
| !!! | ACAACTTTTTCAAGATTTAT+AGG | + | chr8.1:78099178-78099197 | MS.gene89149:intron | 20.0% |
| !!! | GTAAGCGTTTTTTTTTTTTT+AGG | + | chr8.1:78098288-78098307 | MS.gene89149:intron | 20.0% |
| !!! | TCTTTTACTAGTTAAATTTC+TGG | - | chr8.1:78098701-78098720 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGATTTATAGGTT+AGG | + | chr8.1:78099183-78099202 | MS.gene89149:intron | 20.0% |
| ! | AAGTTGAAACAAAAACAAGA+AGG | - | chr8.1:78098264-78098283 | None:intergenic | 25.0% |
| ! | AATATGATTAAACTGATCAG+TGG | - | chr8.1:78099897-78099916 | None:intergenic | 25.0% |
| ! | ACTAGTAAAAGAAATGACTT+TGG | + | chr8.1:78098709-78098728 | MS.gene89149:intron | 25.0% |
| ! | ACTTTCTATTATTCAAGCTT+AGG | - | chr8.1:78099026-78099045 | None:intergenic | 25.0% |
| ! | CAGATTAATAACTGTTAAGT+AGG | + | chr8.1:78098754-78098773 | MS.gene89149:intron | 25.0% |
| ! | CTTTATATTGTGGTAAAATG+TGG | + | chr8.1:78099698-78099717 | MS.gene89149:intron | 25.0% |
| ! | CTTTCTATTATTCAAGCTTA+GGG | - | chr8.1:78099025-78099044 | None:intergenic | 25.0% |
| ! | GATGTATAAATGAAAATGCA+TGG | - | chr8.1:78098825-78098844 | None:intergenic | 25.0% |
| ! | TATATTTAAATACTACGGTC+CGG | - | chr8.1:78098986-78099005 | None:intergenic | 25.0% |
| ! | TATTTCCTAAAAGAAACTTG+AGG | + | chr8.1:78099796-78099815 | MS.gene89149:intron | 25.0% |
| ! | TTATTAATCTGATGCATGTA+AGG | - | chr8.1:78098745-78098764 | None:intergenic | 25.0% |
| !! | AAAAACCTCAAGTTTCTTTT+AGG | - | chr8.1:78099804-78099823 | None:intergenic | 25.0% |
| !! | CACATTTTACCACAATATAA+AGG | - | chr8.1:78099700-78099719 | None:intergenic | 25.0% |
| !! | TTACTAGTTAAATTTCTGGA+AGG | - | chr8.1:78098697-78098716 | None:intergenic | 25.0% |
| !!! | AAGAGAACAATTTTTGAGTA+TGG | + | chr8.1:78099467-78099486 | MS.gene89149:CDS | 25.0% |
| !!! | ACAACCAAGGTTTTTAAAAA+AGG | - | chr8.1:78099278-78099297 | None:intergenic | 25.0% |
| !!! | ACCATGTACACAATTTTTTT+CGG | - | chr8.1:78100222-78100241 | None:intergenic | 25.0% |
| !!! | ATAAACAATTCTAGAGCTTA+TGG | - | chr8.1:78098413-78098432 | None:intergenic | 25.0% |
| !!! | GTTTTTATTTTATGTAGCTG+AGG | + | chr8.1:78099818-78099837 | MS.gene89149:intron | 25.0% |
| AAAGATTGTTCAACTTGATG+AGG | + | chr8.1:78099508-78099527 | MS.gene89149:CDS | 30.0% | |
| ACCGAAAAAAATTGTGTACA+TGG | + | chr8.1:78100218-78100237 | MS.gene89149:CDS | 30.0% | |
| ATTCTGATGAATCCAACAAA+AGG | - | chr8.1:78098235-78098254 | None:intergenic | 30.0% | |
| ATTTGCACAAGACAAAAGTT+GGG | + | chr8.1:78098868-78098887 | MS.gene89149:intron | 30.0% | |
| CTAATCAAACTTATTGTGCT+TGG | + | chr8.1:78100125-78100144 | MS.gene89149:intron | 30.0% | |
| CTCATAGTTTACTGATAAGT+GGG | + | chr8.1:78098896-78098915 | MS.gene89149:intron | 30.0% | |
| TAAAAGACTAGAAGACATGA+AGG | - | chr8.1:78099941-78099960 | None:intergenic | 30.0% | |
| TATGTTCATAAATAGACCAG+CGG | - | chr8.1:78098500-78098519 | None:intergenic | 30.0% | |
| TATTTGCACAAGACAAAAGT+TGG | + | chr8.1:78098867-78098886 | MS.gene89149:intron | 30.0% | |
| TCCAAACGAGCTTAATATTA+AGG | - | chr8.1:78098332-78098351 | None:intergenic | 30.0% | |
| TCCTTAATATTAAGCTCGTT+TGG | + | chr8.1:78098328-78098347 | MS.gene89149:intron | 30.0% | |
| TTTACAAGATTACCCTTGAA+CGG | - | chr8.1:78098963-78098982 | None:intergenic | 30.0% | |
| ! | ACTATACCGATCTTAATTTG+CGG | + | chr8.1:78099656-78099675 | MS.gene89149:intron | 30.0% |
| ! | TGCATAAAATCTTTTCACAG+TGG | - | chr8.1:78099534-78099553 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTTTCAACTTGC+TGG | + | chr8.1:78098266-78098285 | MS.gene89149:CDS | 30.0% |
| AACATTAGCGATCATAAAGC+CGG | + | chr8.1:78099412-78099431 | MS.gene89149:CDS | 35.0% | |
| ACCTGGTCATGTATTTAACA+AGG | - | chr8.1:78099586-78099605 | None:intergenic | 35.0% | |
| ACTATAGTCTATAGGATACC+TGG | - | chr8.1:78099603-78099622 | None:intergenic | 35.0% | |
| AGGATAATGCTATTGCTGAT+TGG | + | chr8.1:78100033-78100052 | MS.gene89149:CDS | 35.0% | |
| ATCTCTCTTTGTGCAGATTT+GGG | - | chr8.1:78100254-78100273 | None:intergenic | 35.0% | |
| ATTCAAACTTATTCTTCCGC+TGG | + | chr8.1:78098481-78098500 | MS.gene89149:intron | 35.0% | |
| CAAGATAAGCAGAAGAAGAA+TGG | - | chr8.1:78098656-78098675 | None:intergenic | 35.0% | |
| CACTGTGAACCTTTATATTG+TGG | + | chr8.1:78099688-78099707 | MS.gene89149:intron | 35.0% | |
| CATAACTATAATCAGTGGAC+CGG | + | chr8.1:78099989-78100008 | MS.gene89149:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | + | chr8.1:78098895-78098914 | MS.gene89149:intron | 35.0% | |
| GTCAGAGATGTAAACACAAT+TGG | + | chr8.1:78099064-78099083 | MS.gene89149:intron | 35.0% | |
| GTTGGATTCATCAGAATACT+TGG | + | chr8.1:78098238-78098257 | MS.gene89149:CDS | 35.0% | |
| TATCTCTCTTTGTGCAGATT+TGG | - | chr8.1:78100255-78100274 | None:intergenic | 35.0% | |
| TCAAGGGTAATCTTGTAAAC+CGG | + | chr8.1:78098964-78098983 | MS.gene89149:intron | 35.0% | |
| TCTAGGCAACTATAGTCTAT+AGG | - | chr8.1:78099611-78099630 | None:intergenic | 35.0% | |
| TGGTAAAATGTGGGTAAATG+CGG | + | chr8.1:78099708-78099727 | MS.gene89149:intron | 35.0% | |
| TTCGCCATAACTATAATCAG+TGG | + | chr8.1:78099984-78100003 | MS.gene89149:intron | 35.0% | |
| ! | GAGAGCTCTTTGAAGAAAAA+TGG | - | chr8.1:78100278-78100297 | None:intergenic | 35.0% |
| !! | AGCTTTACACTTGCTGTTAA+TGG | + | chr8.1:78099848-78099867 | MS.gene89149:intron | 35.0% |
| !!! | ATATTTTTGGCATCTGAGTG+AGG | + | chr8.1:78098569-78098588 | MS.gene89149:intron | 35.0% |
| !!! | GGGTCCTTTTTTAAAAACCT+TGG | + | chr8.1:78099271-78099290 | MS.gene89149:intron | 35.0% |
| !!! | TATTTTTGGCATCTGAGTGA+GGG | + | chr8.1:78098570-78098589 | MS.gene89149:intron | 35.0% |
| AACAGCATCAGAGCAAAATG+TGG | + | chr8.1:78100188-78100207 | MS.gene89149:intron | 40.0% | |
| ACATTACACACACACAACCA+AGG | - | chr8.1:78099291-78099310 | None:intergenic | 40.0% | |
| AGACTAGAAGACATGAAGGA+AGG | - | chr8.1:78099937-78099956 | None:intergenic | 40.0% | |
| AGTCTTCAACCGCAATATAG+CGG | - | chr8.1:78099764-78099783 | None:intergenic | 40.0% | |
| AGTGTCACAGTCAAATGCTT+CGG | + | chr8.1:78099244-78099263 | MS.gene89149:intron | 40.0% | |
| CACAAGACAAAAGTTGGGTA+TGG | + | chr8.1:78098873-78098892 | MS.gene89149:intron | 40.0% | |
| CGAAGCAAAAGAGGTGATTT+AGG | - | chr8.1:78099968-78099987 | None:intergenic | 40.0% | |
| CTGATGAATCCAACAAAAGG+AGG | - | chr8.1:78098232-78098251 | None:intergenic | 40.0% | |
| GAACACACAAGATTTGAGTG+CGG | - | chr8.1:78099097-78099116 | None:intergenic | 40.0% | |
| GGTCATGTATTTAACAAGGC+TGG | - | chr8.1:78099582-78099601 | None:intergenic | 40.0% | |
| GTATGGTTTCAGCATTGTCA+AGG | + | chr8.1:78099484-78099503 | MS.gene89149:CDS | 40.0% | |
| TAGTTACCAAGCAATCCATC+CGG | - | chr8.1:78099434-78099453 | None:intergenic | 40.0% | |
| TAGTTATGGCGAAGCAAAAG+AGG | - | chr8.1:78099977-78099996 | None:intergenic | 40.0% | |
| TAGTTTACTGATAAGTGGGC+AGG | + | chr8.1:78098900-78098919 | MS.gene89149:intron | 40.0% | |
| TATCGAAGATAACAACGCGA+CGG | - | chr8.1:78099219-78099238 | None:intergenic | 40.0% | |
| TCCAAAACCATGACTAACAC+CGG | - | chr8.1:78100011-78100030 | None:intergenic | 40.0% | |
| ! | CGGTCCACTGATTATAGTTA+TGG | - | chr8.1:78099991-78100010 | None:intergenic | 40.0% |
| ! | GCCTTGTTAAATACATGACC+AGG | + | chr8.1:78099582-78099601 | MS.gene89149:CDS | 40.0% |
| !! | CCTCTAAAACCGCTATATTG+CGG | + | chr8.1:78099752-78099771 | MS.gene89149:intron | 40.0% |
| !!! | GTTAGTCATGGTTTTGGAGA+AGG | + | chr8.1:78100013-78100032 | MS.gene89149:CDS | 40.0% |
| AGACTCTTGTTGCATGATGG+TGG | + | chr8.1:78099628-78099647 | MS.gene89149:intron | 45.0% | |
| AGTAACATGCATGACCTGTG+AGG | - | chr8.1:78100107-78100126 | None:intergenic | 45.0% | |
| AGTTGCAGTTCTTCTACCGA+TGG | + | chr8.1:78099371-78099390 | MS.gene89149:intron | 45.0% | |
| CAAGATTTGAGTGCGGAGTT+TGG | - | chr8.1:78099090-78099109 | None:intergenic | 45.0% | |
| CCATCATGCAACAAGAGTCT+AGG | - | chr8.1:78099628-78099647 | None:intergenic | 45.0% | |
| CCGCAACCGCAAATTAAGAT+CGG | - | chr8.1:78099665-78099684 | None:intergenic | 45.0% | |
| CCTAGACTCTTGTTGCATGA+TGG | + | chr8.1:78099625-78099644 | MS.gene89149:intron | 45.0% | |
| CGGTAGAAGAACTGCAACTT+TGG | - | chr8.1:78099370-78099389 | None:intergenic | 45.0% | |
| CTAAGATTACTCACCCTCAC+AGG | + | chr8.1:78100090-78100109 | MS.gene89149:CDS | 45.0% | |
| CTGCATGTTCGTACTTCCAT+CGG | - | chr8.1:78099390-78099409 | None:intergenic | 45.0% | |
| GTAACATGCATGACCTGTGA+GGG | - | chr8.1:78100106-78100125 | None:intergenic | 45.0% | |
| TTAGCGATCATAAAGCCGGA+TGG | + | chr8.1:78099416-78099435 | MS.gene89149:CDS | 45.0% | |
| TTCTTCAAAGAGCTCTCTCC+AGG | + | chr8.1:78100281-78100300 | MS.gene89149:CDS | 45.0% | |
| ! | GCTTAAAAGTGCGCATCTTG+TGG | + | chr8.1:78099322-78099341 | MS.gene89149:intron | 45.0% |
| !! | ACCGGTGTTAGTCATGGTTT+TGG | + | chr8.1:78100007-78100026 | MS.gene89149:CDS | 45.0% |
| !! | ATAAAGCCGGATGGATTGCT+TGG | + | chr8.1:78099425-78099444 | MS.gene89149:CDS | 45.0% |
| !! | CCGATCTTAATTTGCGGTTG+CGG | + | chr8.1:78099662-78099681 | MS.gene89149:intron | 45.0% |
| !! | CCGCAATATAGCGGTTTTAG+AGG | - | chr8.1:78099755-78099774 | None:intergenic | 45.0% |
| ACAGTCAAATGCTTCGGTCG+CGG | + | chr8.1:78099250-78099269 | MS.gene89149:intron | 50.0% | |
| AGATTACCCTTGAACGGCAC+AGG | - | chr8.1:78098957-78098976 | None:intergenic | 50.0% | |
| ATTACCCTTGAACGGCACAG+GGG | - | chr8.1:78098955-78098974 | None:intergenic | 50.0% | |
| GATTACCCTTGAACGGCACA+GGG | - | chr8.1:78098956-78098975 | None:intergenic | 50.0% | |
| GGCATCTGAGTGAGGGAAAA+TGG | + | chr8.1:78098577-78098596 | MS.gene89149:intron | 50.0% | |
| ! | TAGCCTTGCTTGCATCCGTA+GGG | - | chr8.1:78100073-78100092 | None:intergenic | 50.0% |
| !! | TTAGCCTTGCTTGCATCCGT+AGG | - | chr8.1:78100074-78100093 | None:intergenic | 50.0% |
| CAGTCAAATGCTTCGGTCGC+GGG | + | chr8.1:78099251-78099270 | MS.gene89149:intron | 55.0% | |
| GCTGATTGGCGCGCTTTGAT+GGG | + | chr8.1:78100047-78100066 | MS.gene89149:CDS | 55.0% | |
| GGTATCCGCATCAGCAGTTG+TGG | - | chr8.1:78099734-78099753 | None:intergenic | 55.0% | |
| TTACCCTTGAACGGCACAGG+GGG | - | chr8.1:78098954-78098973 | None:intergenic | 55.0% | |
| ! | CAGTGGACCGGTGTTAGTCA+TGG | + | chr8.1:78100001-78100020 | MS.gene89149:intron | 55.0% |
| ! | TGCTGATTGGCGCGCTTTGA+TGG | + | chr8.1:78100046-78100065 | MS.gene89149:CDS | 55.0% |
| GGGGGATTCACCTTCCACAC+CGG | - | chr8.1:78098935-78098954 | None:intergenic | 60.0% | |
| TACCCTTGAACGGCACAGGG+GGG | - | chr8.1:78098953-78098972 | None:intergenic | 60.0% | |
| TGCGGCCACAACTGCTGATG+CGG | + | chr8.1:78099726-78099745 | MS.gene89149:intron | 60.0% | |
| ! | AATCCCCCCTGTGCCGTTCA+AGG | + | chr8.1:78098947-78098966 | MS.gene89149:intron | 60.0% |
| ! | ATCCCCCCTGTGCCGTTCAA+GGG | + | chr8.1:78098948-78098967 | MS.gene89149:intron | 60.0% |
| AGTGGGCAGGTCGCTTGAGC+CGG | + | chr8.1:78098913-78098932 | MS.gene89149:intron | 65.0% | |
| GGGCCCTACGGATGCAAGCA+AGG | + | chr8.1:78100067-78100086 | MS.gene89149:CDS | 65.0% | |
| GTCGCTTGAGCCGGTGTGGA+AGG | + | chr8.1:78098922-78098941 | MS.gene89149:intron | 65.0% | |
| ! | GCGCGCTTTGATGGGCCCTA+CGG | + | chr8.1:78100055-78100074 | MS.gene89149:CDS | 65.0% |
| GCAGGTCGCTTGAGCCGGTG+TGG | + | chr8.1:78098918-78098937 | MS.gene89149:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78098223 | 78100310 | 78098223 | ID=MS.gene89149 |
| chr8.1 | mRNA | 78098223 | 78100310 | 78098223 | ID=MS.gene89149.t1;Parent=MS.gene89149 |
| chr8.1 | exon | 78098223 | 78098287 | 78098223 | ID=MS.gene89149.t1.exon1;Parent=MS.gene89149.t1 |
| chr8.1 | CDS | 78098223 | 78098287 | 78098223 | ID=cds.MS.gene89149.t1;Parent=MS.gene89149.t1 |
| chr8.1 | exon | 78099373 | 78099603 | 78099373 | ID=MS.gene89149.t1.exon2;Parent=MS.gene89149.t1 |
| chr8.1 | CDS | 78099373 | 78099603 | 78099373 | ID=cds.MS.gene89149.t1;Parent=MS.gene89149.t1 |
| chr8.1 | exon | 78100004 | 78100111 | 78100004 | ID=MS.gene89149.t1.exon3;Parent=MS.gene89149.t1 |
| chr8.1 | CDS | 78100004 | 78100111 | 78100004 | ID=cds.MS.gene89149.t1;Parent=MS.gene89149.t1 |
| chr8.1 | exon | 78100193 | 78100310 | 78100193 | ID=MS.gene89149.t1.exon4;Parent=MS.gene89149.t1 |
| chr8.1 | CDS | 78100193 | 78100310 | 78100193 | ID=cds.MS.gene89149.t1;Parent=MS.gene89149.t1 |
| Gene Sequence |
| Protein sequence |
