Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98636.t1 | XP_013455748.1 | 97.8 | 360 | 8 | 0 | 1 | 360 | 1 | 360 | 1.80E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98636.t1 | Q54NS9 | 33.1 | 375 | 215 | 9 | 3 | 346 | 27 | 396 | 5.2e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98636.t1 | A0A072UJ51 | 97.8 | 360 | 8 | 0 | 1 | 360 | 1 | 360 | 1.3e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene98636 | 0.821657 | 3.59E-53 | -1.69E-46 |
| MS.gene049182 | MS.gene98636 | 0.863114 | 3.14E-64 | -1.69E-46 |
| MS.gene049197 | MS.gene98636 | 0.8014 | 9.17E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene98636 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene98636 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene050379 | MS.gene98636 | 0.845482 | 3.95E-59 | -1.69E-46 |
| MS.gene050559 | MS.gene98636 | 0.800509 | 1.39E-48 | -1.69E-46 |
| MS.gene050945 | MS.gene98636 | 0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene051019 | MS.gene98636 | 0.821524 | 3.86E-53 | -1.69E-46 |
| MS.gene051132 | MS.gene98636 | 0.80684 | 6.77E-50 | -1.69E-46 |
| MS.gene051136 | MS.gene98636 | 0.811997 | 5.29E-51 | -1.69E-46 |
| MS.gene051154 | MS.gene98636 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene05156 | MS.gene98636 | 0.833287 | 5.81E-56 | -1.69E-46 |
| MS.gene051699 | MS.gene98636 | 0.848949 | 4.42E-60 | -1.69E-46 |
| MS.gene051959 | MS.gene98636 | 0.876343 | 1.51E-68 | -1.69E-46 |
| MS.gene051960 | MS.gene98636 | 0.881477 | 2.32E-70 | -1.69E-46 |
| MS.gene052040 | MS.gene98636 | 0.833366 | 5.56E-56 | -1.69E-46 |
| MS.gene052053 | MS.gene98636 | 0.856122 | 3.98E-62 | -1.69E-46 |
| MS.gene052533 | MS.gene98636 | 0.815691 | 8.12E-52 | -1.69E-46 |
| MS.gene052537 | MS.gene98636 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene052559 | MS.gene98636 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene052560 | MS.gene98636 | 0.813119 | 3.01E-51 | -1.69E-46 |
| MS.gene052570 | MS.gene98636 | 0.828689 | 7.82E-55 | -1.69E-46 |
| MS.gene052579 | MS.gene98636 | 0.848135 | 7.43E-60 | -1.69E-46 |
| MS.gene052793 | MS.gene98636 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene053272 | MS.gene98636 | -0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene053602 | MS.gene98636 | 0.846385 | 2.25E-59 | -1.69E-46 |
| MS.gene054413 | MS.gene98636 | 0.808851 | 2.53E-50 | -1.69E-46 |
| MS.gene054490 | MS.gene98636 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene98636 | 0.81642 | 5.58E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene98636 | 0.86399 | 1.68E-64 | -1.69E-46 |
| MS.gene055151 | MS.gene98636 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene055229 | MS.gene98636 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene056100 | MS.gene98636 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene056185 | MS.gene98636 | 0.818844 | 1.59E-52 | -1.69E-46 |
| MS.gene05624 | MS.gene98636 | 0.823201 | 1.57E-53 | -1.69E-46 |
| MS.gene056363 | MS.gene98636 | 0.827685 | 1.36E-54 | -1.69E-46 |
| MS.gene056530 | MS.gene98636 | 0.838262 | 3.19E-57 | -1.69E-46 |
| MS.gene056677 | MS.gene98636 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene98636 | 0.827733 | 1.33E-54 | -1.69E-46 |
| MS.gene057001 | MS.gene98636 | 0.847392 | 1.19E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene98636 | 0.812462 | 4.19E-51 | -1.69E-46 |
| MS.gene057148 | MS.gene98636 | -0.855776 | 5.03E-62 | -1.69E-46 |
| MS.gene057174 | MS.gene98636 | 0.828837 | 7.20E-55 | -1.69E-46 |
| MS.gene057472 | MS.gene98636 | 0.844818 | 5.97E-59 | -1.69E-46 |
| MS.gene058781 | MS.gene98636 | 0.822725 | 2.03E-53 | -1.69E-46 |
| MS.gene05878 | MS.gene98636 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene059436 | MS.gene98636 | 0.829795 | 4.21E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene98636 | 0.862169 | 6.13E-64 | -1.69E-46 |
| MS.gene05985 | MS.gene98636 | -0.849542 | 3.02E-60 | -1.69E-46 |
| MS.gene06023 | MS.gene98636 | 0.809905 | 1.50E-50 | -1.69E-46 |
| MS.gene060338 | MS.gene98636 | 0.828025 | 1.13E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene98636 | 0.860131 | 2.56E-63 | -1.69E-46 |
| MS.gene060906 | MS.gene98636 | 0.833775 | 4.39E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene98636 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene98636 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene98636 | 0.818969 | 1.49E-52 | -1.69E-46 |
| MS.gene060975 | MS.gene98636 | 0.821658 | 3.59E-53 | -1.69E-46 |
| MS.gene060977 | MS.gene98636 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene98636 | 0.814775 | 1.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98636.t1 | MTR_4g051622 | 97.778 | 360 | 8 | 0 | 1 | 360 | 1 | 360 | 0.0 | 717 |
| MS.gene98636.t1 | MTR_4g051645 | 67.416 | 356 | 114 | 2 | 3 | 357 | 6 | 360 | 0.0 | 505 |
| MS.gene98636.t1 | MTR_2g061440 | 55.000 | 80 | 36 | 0 | 138 | 217 | 193 | 272 | 8.28e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98636.t1 | AT5G22140 | 64.972 | 354 | 123 | 1 | 4 | 357 | 12 | 364 | 2.90e-170 | 479 |
| MS.gene98636.t1 | AT3G44190 | 62.994 | 354 | 130 | 1 | 4 | 357 | 12 | 364 | 8.56e-169 | 475 |
| MS.gene98636.t1 | AT3G44190 | 63.344 | 311 | 113 | 1 | 47 | 357 | 1 | 310 | 2.12e-146 | 416 |
| MS.gene98636.t1 | AT5G22140 | 64.309 | 311 | 110 | 1 | 47 | 357 | 1 | 310 | 3.31e-146 | 416 |
Find 68 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCCATGGGCAAGTTTA+AGG | 0.156955 | 4.2:+50603269 | MS.gene98636:CDS |
| TATCAATAGTTTCAGATTCT+TGG | 0.196415 | 4.2:-50604936 | None:intergenic |
| AAGTCTTTCGGTCCTTGTTT+TGG | 0.248727 | 4.2:-50603473 | None:intergenic |
| AATGTCTTTCTTGAAGCTTT+TGG | 0.265463 | 4.2:-50604255 | None:intergenic |
| ACTCCTTCACAAATGAAAAT+AGG | 0.306830 | 4.2:+50604334 | MS.gene98636:CDS |
| CTTCAAGAAAGACATTAAAA+TGG | 0.321115 | 4.2:+50604262 | MS.gene98636:CDS |
| ACAATTGTTGGAAGGCTTCC+TGG | 0.324524 | 4.2:+50605064 | MS.gene98636:CDS |
| GGAGCGAAAGAACGTAAATT+AGG | 0.359944 | 4.2:+50604965 | MS.gene98636:CDS |
| TCAAGATTGCTAGAATATAT+TGG | 0.361205 | 4.2:+50604231 | MS.gene98636:CDS |
| CCAAGTGAAACAATAGATAT+TGG | 0.377879 | 4.2:-50605007 | None:intergenic |
| TTTCCTTTCATGACAATTGT+TGG | 0.378561 | 4.2:+50605052 | MS.gene98636:CDS |
| GATTCCATGGGCAAGTTTAA+GGG | 0.378904 | 4.2:+50603270 | MS.gene98636:CDS |
| TTCAGATTCAGTTATGTTGA+TGG | 0.386308 | 4.2:-50603377 | None:intergenic |
| GAAAAGAAAGTTGTGATTAT+AGG | 0.392457 | 4.2:+50602334 | MS.gene98636:CDS |
| ATTGCTTACCTCCTTTGTAT+TGG | 0.393585 | 4.2:-50603498 | None:intergenic |
| GATTATCTTGTTATCGCAAC+TGG | 0.394119 | 4.2:+50603433 | MS.gene98636:CDS |
| ATTATAGGAGGTGGTGTTGC+TGG | 0.401428 | 4.2:+50602349 | MS.gene98636:CDS |
| TTTGTATTGGTCAAGTCTTT+CGG | 0.415825 | 4.2:-50603485 | None:intergenic |
| CTTCCTGGTATGATCAAGTC+TGG | 0.422078 | 4.2:+50605079 | MS.gene98636:CDS |
| AAGTCTGGAGATTTGTTTGT+TGG | 0.437062 | 4.2:+50605094 | MS.gene98636:CDS |
| GGGAAAACAAGAAAGGGATT+AGG | 0.446814 | 4.2:+50605115 | MS.gene98636:CDS |
| AGTCTGGAGATTTGTTTGTT+GGG | 0.447804 | 4.2:+50605095 | MS.gene98636:CDS |
| GATGAGTACTTGAGAGTGAA+GGG | 0.449684 | 4.2:+50604492 | MS.gene98636:CDS |
| GTTTGTTGGGAAAACAAGAA+AGG | 0.452444 | 4.2:+50605108 | MS.gene98636:CDS |
| AATCTGAAACTATTGATAGA+AGG | 0.453316 | 4.2:+50604941 | MS.gene98636:CDS |
| TGCGATAACAAGATAATCAT+AGG | 0.455029 | 4.2:-50603428 | None:intergenic |
| TTTGTTGGGAAAACAAGAAA+GGG | 0.460435 | 4.2:+50605109 | MS.gene98636:CDS |
| CCAATATCTATTGTTTCACT+TGG | 0.467044 | 4.2:+50605007 | MS.gene98636:CDS |
| CATAGAGAATATTTCACAAA+AGG | 0.477184 | 4.2:+50603334 | MS.gene98636:CDS |
| CATTAAAATGGCTTCAATCA+AGG | 0.485208 | 4.2:+50604274 | MS.gene98636:CDS |
| AAAGTGACTATAGTGCATAA+AGG | 0.487929 | 4.2:+50604207 | MS.gene98636:CDS |
| CTCTCAAGTACTCATCAACT+TGG | 0.488733 | 4.2:-50604485 | None:intergenic |
| CTTTCATGACAATTGTTGGA+AGG | 0.497870 | 4.2:+50605056 | MS.gene98636:CDS |
| ATTGTCGGTGGAGGTCCAAC+TGG | 0.506007 | 4.2:+50604141 | MS.gene98636:CDS |
| GATTACTGTCCTTTCTGCAA+AGG | 0.514545 | 4.2:-50603308 | None:intergenic |
| TGTTATCGCAACTGGTCATA+CGG | 0.523541 | 4.2:+50603441 | MS.gene98636:CDS |
| TGATGAGTACTTGAGAGTGA+AGG | 0.525012 | 4.2:+50604491 | MS.gene98636:CDS |
| AGGACATATCAAACTTCAGT+TGG | 0.525563 | 4.2:+50604354 | MS.gene98636:CDS |
| GATAATCATAGGCAATTTCA+CGG | 0.532473 | 4.2:-50603417 | None:intergenic |
| CCAAGCCATGCTGTAGCAAG+TGG | 0.538403 | 4.2:-50604420 | None:intergenic |
| ATGGGCAAGTTTAAGGGCAA+TGG | 0.538869 | 4.2:+50603276 | MS.gene98636:CDS |
| TCTGAAGTCTTCACTGCTGA+TGG | 0.538947 | 4.2:+50603394 | MS.gene98636:CDS |
| CCACTTGCTACAGCATGGCT+TGG | 0.540166 | 4.2:+50604420 | MS.gene98636:CDS |
| GTTTCACTTGGAAGAAAACA+TGG | 0.548086 | 4.2:+50605019 | MS.gene98636:CDS |
| CTTCCAACAATTGTCATGAA+AGG | 0.551683 | 4.2:-50605055 | None:intergenic |
| GGCAAGTTTAAGGGCAATGG+TGG | 0.562939 | 4.2:+50603279 | MS.gene98636:CDS |
| TGGAGCCATCCTTTGCAGAA+AGG | 0.564597 | 4.2:+50603299 | MS.gene98636:CDS |
| ACTGTCCTTTCTGCAAAGGA+TGG | 0.565164 | 4.2:-50603304 | None:intergenic |
| AAAGTTGTGATTATAGGAGG+TGG | 0.565821 | 4.2:+50602340 | MS.gene98636:CDS |
| AAAGATGATTTGGATGGTCA+TGG | 0.566723 | 4.2:+50604456 | MS.gene98636:CDS |
| AGTGAAACAATAGATATTGG+TGG | 0.570389 | 4.2:-50605004 | None:intergenic |
| AGTACTTGAGAGTGAAGGGA+AGG | 0.576975 | 4.2:+50604496 | MS.gene98636:CDS |
| AAGAAAGTTGTGATTATAGG+AGG | 0.578925 | 4.2:+50602337 | MS.gene98636:CDS |
| TCTCCAGACTTGATCATACC+AGG | 0.579617 | 4.2:-50605082 | None:intergenic |
| GCTGCTAGCTCGACACCAGT+TGG | 0.587572 | 4.2:-50604156 | None:intergenic |
| ATTGCCCTTAAACTTGCCCA+TGG | 0.588671 | 4.2:-50603274 | None:intergenic |
| TTTCTGAAAGATGATTTGGA+TGG | 0.601708 | 4.2:+50604450 | MS.gene98636:CDS |
| CTGAAACTATTGATAGAAGG+AGG | 0.602874 | 4.2:+50604944 | MS.gene98636:CDS |
| CGGAATCTATCCCCAAAACA+AGG | 0.611323 | 4.2:+50603461 | MS.gene98636:CDS |
| ATGATTTGGATGGTCATGGA+AGG | 0.615413 | 4.2:+50604460 | MS.gene98636:CDS |
| ACGTAAATTAGGTACTTACA+AGG | 0.616980 | 4.2:+50604976 | MS.gene98636:CDS |
| CGAGCTAGCAGCAGAGATTG+CGG | 0.623893 | 4.2:+50604167 | MS.gene98636:CDS |
| TGATGGCAGTTGATATAACA+AGG | 0.652543 | 4.2:-50603360 | None:intergenic |
| GGAAACCACTTGCTACAGCA+TGG | 0.653025 | 4.2:+50604415 | MS.gene98636:CDS |
| GAAAGACTTGACCAATACAA+AGG | 0.653500 | 4.2:+50603487 | MS.gene98636:CDS |
| AAACAAGGAGTGTATGCACA+AGG | 0.668753 | 4.2:+50604896 | MS.gene98636:CDS |
| AGACTTGACCAATACAAAGG+AGG | 0.681103 | 4.2:+50603490 | MS.gene98636:CDS |
| ATGTTACAGGAAATAAAACA+AGG | 0.698106 | 4.2:+50604881 | MS.gene98636:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATAATATAAATTTTTTAG+AGG | - | chr4.2:50603065-50603084 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAGAGCA+TGG | - | chr4.2:50602467-50602486 | None:intergenic | 15.0% |
| !! | AAAAAATCTGTATTGAAATA+TGG | - | chr4.2:50603879-50603898 | None:intergenic | 15.0% |
| !! | AAAATTGAATTATATGTTAC+AGG | + | chr4.2:50604868-50604887 | MS.gene98636:intron | 15.0% |
| !!! | ATCAAAATTTTGTATTAACT+AGG | - | chr4.2:50604845-50604864 | None:intergenic | 15.0% |
| !!! | CTTATTCATATATCTTTTAT+TGG | - | chr4.2:50604572-50604591 | None:intergenic | 15.0% |
| !!! | TGTGTTAAATTTAATTTGAA+TGG | + | chr4.2:50602528-50602547 | MS.gene98636:intron | 15.0% |
| !! | AATTCTAGCAATTAATAGTA+TGG | - | chr4.2:50603787-50603806 | None:intergenic | 20.0% |
| !! | GTAACTAAAATAATATCGAT+TGG | + | chr4.2:50602550-50602569 | MS.gene98636:intron | 20.0% |
| !! | TACTATTAATTGCTAGAATT+TGG | + | chr4.2:50603787-50603806 | MS.gene98636:intron | 20.0% |
| !!! | ATACACATTTTCTATGTATA+GGG | + | chr4.2:50604394-50604413 | MS.gene98636:CDS | 20.0% |
| !!! | GTTAGTTTAGAATTTTGATA+TGG | + | chr4.2:50602693-50602712 | MS.gene98636:intron | 20.0% |
| ! | AACTGATCAAATATCAATCA+GGG | + | chr4.2:50603565-50603584 | MS.gene98636:intron | 25.0% |
| ! | ATGTTACAGGAAATAAAACA+AGG | + | chr4.2:50604881-50604900 | MS.gene98636:intron | 25.0% |
| ! | CATAGAGAATATTTCACAAA+AGG | + | chr4.2:50603334-50603353 | MS.gene98636:CDS | 25.0% |
| ! | CTTCAAGAAAGACATTAAAA+TGG | + | chr4.2:50604262-50604281 | MS.gene98636:CDS | 25.0% |
| ! | GAAAAGAAAGTTGTGATTAT+AGG | + | chr4.2:50602334-50602353 | MS.gene98636:CDS | 25.0% |
| ! | GTATTAAAACCTTTCACTTT+CGG | + | chr4.2:50604805-50604824 | MS.gene98636:intron | 25.0% |
| ! | TATAGTCTTTCTCTATGAAT+TGG | + | chr4.2:50602646-50602665 | MS.gene98636:intron | 25.0% |
| ! | TATCAATAGTTTCAGATTCT+TGG | - | chr4.2:50604939-50604958 | None:intergenic | 25.0% |
| ! | TCAAGATTGCTAGAATATAT+TGG | + | chr4.2:50604231-50604250 | MS.gene98636:CDS | 25.0% |
| ! | TGTGATTTCTTACAATATCA+AGG | - | chr4.2:50603616-50603635 | None:intergenic | 25.0% |
| ! | TTAAACACATCAATGATTGT+TGG | - | chr4.2:50603955-50603974 | None:intergenic | 25.0% |
| !! | AATCTGAAACTATTGATAGA+AGG | + | chr4.2:50604941-50604960 | MS.gene98636:CDS | 25.0% |
| !! | CTTTTGTGAAATATTCTCTA+TGG | - | chr4.2:50603336-50603355 | None:intergenic | 25.0% |
| !! | GATACACATTTTCTATGTAT+AGG | + | chr4.2:50604393-50604412 | MS.gene98636:CDS | 25.0% |
| !!! | AACTTTTCTGAAAGATGATT+TGG | + | chr4.2:50604446-50604465 | MS.gene98636:CDS | 25.0% |
| !!! | TTAGAATTTTGATATGGTAC+TGG | + | chr4.2:50602699-50602718 | MS.gene98636:intron | 25.0% |
| AAAGTGACTATAGTGCATAA+AGG | + | chr4.2:50604207-50604226 | MS.gene98636:CDS | 30.0% | |
| AAGAAAGTTGTGATTATAGG+AGG | + | chr4.2:50602337-50602356 | MS.gene98636:CDS | 30.0% | |
| AATGATTGTTGGATTGAGAT+TGG | - | chr4.2:50603944-50603963 | None:intergenic | 30.0% | |
| ACGTAAATTAGGTACTTACA+AGG | + | chr4.2:50604976-50604995 | MS.gene98636:CDS | 30.0% | |
| ACTCCTTCACAAATGAAAAT+AGG | + | chr4.2:50604334-50604353 | MS.gene98636:CDS | 30.0% | |
| AGTGAAACAATAGATATTGG+TGG | - | chr4.2:50605007-50605026 | None:intergenic | 30.0% | |
| ATAAAACCGAACTTGAAATC+CGG | + | chr4.2:50603913-50603932 | MS.gene98636:intron | 30.0% | |
| ATGCAGAGTGATTGTTTATT+TGG | + | chr4.2:50602779-50602798 | MS.gene98636:intron | 30.0% | |
| CAACTGATCAAATATCAATC+AGG | + | chr4.2:50603564-50603583 | MS.gene98636:intron | 30.0% | |
| CACACAACTTGACATAAATT+AGG | - | chr4.2:50604025-50604044 | None:intergenic | 30.0% | |
| CATTAAAATGGCTTCAATCA+AGG | + | chr4.2:50604274-50604293 | MS.gene98636:CDS | 30.0% | |
| CCAAGTGAAACAATAGATAT+TGG | - | chr4.2:50605010-50605029 | None:intergenic | 30.0% | |
| CCAATATCTATTGTTTCACT+TGG | + | chr4.2:50605007-50605026 | MS.gene98636:CDS | 30.0% | |
| CGACCAAACATAAAATTCTA+CGG | - | chr4.2:50603151-50603170 | None:intergenic | 30.0% | |
| CTTGACATAAATTAGGCAAT+TGG | - | chr4.2:50604018-50604037 | None:intergenic | 30.0% | |
| GATAATCATAGGCAATTTCA+CGG | - | chr4.2:50603420-50603439 | None:intergenic | 30.0% | |
| GCATTATAGCATTGTATCAT+AGG | + | chr4.2:50604702-50604721 | MS.gene98636:intron | 30.0% | |
| TAAATTCCATTTGAGTGATG+AGG | + | chr4.2:50604061-50604080 | MS.gene98636:intron | 30.0% | |
| TAATAAGAGTTGTTGAACAC+AGG | + | chr4.2:50603233-50603252 | MS.gene98636:intron | 30.0% | |
| TATAGAGAGTCTTGAAACAA+AGG | - | chr4.2:50603733-50603752 | None:intergenic | 30.0% | |
| TCTAGCAATTAATAGTATGG+TGG | - | chr4.2:50603784-50603803 | None:intergenic | 30.0% | |
| TGATTGTGTGAGATTATTGA+TGG | - | chr4.2:50603821-50603840 | None:intergenic | 30.0% | |
| TGCGATAACAAGATAATCAT+AGG | - | chr4.2:50603431-50603450 | None:intergenic | 30.0% | |
| TTCAGATTCAGTTATGTTGA+TGG | - | chr4.2:50603380-50603399 | None:intergenic | 30.0% | |
| TTGATCAAATGCAAGATCAA+GGG | - | chr4.2:50603757-50603776 | None:intergenic | 30.0% | |
| TTTCCTTTCATGACAATTGT+TGG | + | chr4.2:50605052-50605071 | MS.gene98636:CDS | 30.0% | |
| TTTGATCAAATGCAAGATCA+AGG | - | chr4.2:50603758-50603777 | None:intergenic | 30.0% | |
| TTTGTTGGGAAAACAAGAAA+GGG | + | chr4.2:50605109-50605128 | MS.gene98636:CDS | 30.0% | |
| ! | AATGTCTTTCTTGAAGCTTT+TGG | - | chr4.2:50604258-50604277 | None:intergenic | 30.0% |
| ! | ACGAAACTTTTAGTGTAAAG+TGG | + | chr4.2:50603200-50603219 | MS.gene98636:intron | 30.0% |
| ! | AGATAAGTAAAGACTGGTTA+AGG | - | chr4.2:50602605-50602624 | None:intergenic | 30.0% |
| ! | AGGCAATTGGAATTTGAAAT+CGG | - | chr4.2:50604005-50604024 | None:intergenic | 30.0% |
| ! | GACTATAGTAATCTAGAGTT+CGG | - | chr4.2:50602633-50602652 | None:intergenic | 30.0% |
| ! | GTACCGTAGAATTTTATGTT+TGG | + | chr4.2:50603145-50603164 | MS.gene98636:intron | 30.0% |
| ! | TGTCCTATTTTCATTTGTGA+AGG | - | chr4.2:50604340-50604359 | None:intergenic | 30.0% |
| ! | TTTCTGAAAGATGATTTGGA+TGG | + | chr4.2:50604450-50604469 | MS.gene98636:CDS | 30.0% |
| ! | TTTGTATTGGTCAAGTCTTT+CGG | - | chr4.2:50603488-50603507 | None:intergenic | 30.0% |
| !!! | ACTATAGTCACTTTTTTGTC+AGG | - | chr4.2:50604201-50604220 | None:intergenic | 30.0% |
| !!! | ATGCTGATGGTTTTAAATTG+AGG | + | chr4.2:50602953-50602972 | MS.gene98636:intron | 30.0% |
| !!! | GATGTTGTATAGTTTTAGCA+AGG | - | chr4.2:50602381-50602400 | None:intergenic | 30.0% |
| AAACCACAAAACAACTGCAA+TGG | - | chr4.2:50603662-50603681 | None:intergenic | 35.0% | |
| AAAGTTGTGATTATAGGAGG+TGG | + | chr4.2:50602340-50602359 | MS.gene98636:CDS | 35.0% | |
| ACAGTTCAATCTCAAGCAAA+CGG | - | chr4.2:50603856-50603875 | None:intergenic | 35.0% | |
| AGAATTCCTCATCACTCAAA+TGG | - | chr4.2:50604070-50604089 | None:intergenic | 35.0% | |
| AGGACATATCAAACTTCAGT+TGG | + | chr4.2:50604354-50604373 | MS.gene98636:CDS | 35.0% | |
| AGGTAAGCAATGATACTTAG+TGG | + | chr4.2:50603510-50603529 | MS.gene98636:intron | 35.0% | |
| AGTCTTTCTCTATGAATTGG+AGG | + | chr4.2:50602649-50602668 | MS.gene98636:intron | 35.0% | |
| ATACTTAGTGGTAACTCTCT+AGG | + | chr4.2:50603522-50603541 | MS.gene98636:intron | 35.0% | |
| ATTGCTTACCTCCTTTGTAT+TGG | - | chr4.2:50603501-50603520 | None:intergenic | 35.0% | |
| ATTGTTGGATTGAGATTGGA+CGG | - | chr4.2:50603940-50603959 | None:intergenic | 35.0% | |
| CAATTGCAGCTGCATTATAA+AGG | - | chr4.2:50603100-50603119 | None:intergenic | 35.0% | |
| CCACTGTATATATAGACATC+AGG | + | chr4.2:50602839-50602858 | MS.gene98636:intron | 35.0% | |
| CCTGATGTCTATATATACAG+TGG | - | chr4.2:50602842-50602861 | None:intergenic | 35.0% | |
| CTGAAACTATTGATAGAAGG+AGG | + | chr4.2:50604944-50604963 | MS.gene98636:CDS | 35.0% | |
| CTTCCAACAATTGTCATGAA+AGG | - | chr4.2:50605058-50605077 | None:intergenic | 35.0% | |
| CTTTCATGACAATTGTTGGA+AGG | + | chr4.2:50605056-50605075 | MS.gene98636:CDS | 35.0% | |
| GAAAGACTTGACCAATACAA+AGG | + | chr4.2:50603487-50603506 | MS.gene98636:CDS | 35.0% | |
| GTCTTTCTCTATGAATTGGA+GGG | + | chr4.2:50602650-50602669 | MS.gene98636:intron | 35.0% | |
| GTGAAAATACCGAAAGTGAA+AGG | - | chr4.2:50604817-50604836 | None:intergenic | 35.0% | |
| GTTTCACTTGGAAGAAAACA+TGG | + | chr4.2:50605019-50605038 | MS.gene98636:CDS | 35.0% | |
| ! | AAAGATGATTTGGATGGTCA+TGG | + | chr4.2:50604456-50604475 | MS.gene98636:CDS | 35.0% |
| ! | AACTGATATTTTCCGCTATC+TGG | + | chr4.2:50604736-50604755 | MS.gene98636:intron | 35.0% |
| ! | AAGTCTGGAGATTTGTTTGT+TGG | + | chr4.2:50605094-50605113 | MS.gene98636:CDS | 35.0% |
| ! | ACTGATATTTTCCGCTATCT+GGG | + | chr4.2:50604737-50604756 | MS.gene98636:intron | 35.0% |
| ! | AGTCTGGAGATTTGTTTGTT+GGG | + | chr4.2:50605095-50605114 | MS.gene98636:CDS | 35.0% |
| ! | GATTATCTTGTTATCGCAAC+TGG | + | chr4.2:50603433-50603452 | MS.gene98636:CDS | 35.0% |
| ! | GTTTGTTGGGAAAACAAGAA+AGG | + | chr4.2:50605108-50605127 | MS.gene98636:CDS | 35.0% |
| ! | TGATGGCAGTTGATATAACA+AGG | - | chr4.2:50603363-50603382 | None:intergenic | 35.0% |
| ! | TGTGTGAGATTATTGATGGT+AGG | - | chr4.2:50603817-50603836 | None:intergenic | 35.0% |
| !! | AAGACTGGTTAAGGATGTTT+TGG | - | chr4.2:50602596-50602615 | None:intergenic | 35.0% |
| !! | TACGGTACCGTTTTAAATTG+CGG | - | chr4.2:50603133-50603152 | None:intergenic | 35.0% |
| !!! | ACTGTTATTTTCCGCTATCT+GGG | - | chr4.2:50604787-50604806 | None:intergenic | 35.0% |
| !!! | AGGAGTATTTTGAGATTCCA+TGG | + | chr4.2:50603257-50603276 | MS.gene98636:CDS | 35.0% |
| !!! | GGAGTATTTTGAGATTCCAT+GGG | + | chr4.2:50603258-50603277 | MS.gene98636:CDS | 35.0% |
| !!! | TACTGTTATTTTCCGCTATC+TGG | - | chr4.2:50604788-50604807 | None:intergenic | 35.0% |
| AAGAGTTGTTGAACACAGGA+AGG | + | chr4.2:50603237-50603256 | MS.gene98636:intron | 40.0% | |
| AGAAAGAAAGAGAGAGCTCA+CGG | - | chr4.2:50602427-50602446 | None:intergenic | 40.0% | |
| AGACTTGACCAATACAAAGG+AGG | + | chr4.2:50603490-50603509 | MS.gene98636:CDS | 40.0% | |
| AGATTCCATGGGCAAGTTTA+AGG | + | chr4.2:50603269-50603288 | MS.gene98636:CDS | 40.0% | |
| ATCTCACACAATCAGCACAA+TGG | + | chr4.2:50603827-50603846 | MS.gene98636:intron | 40.0% | |
| CACTAACTGACATCAATGCA+TGG | - | chr4.2:50604597-50604616 | None:intergenic | 40.0% | |
| CTATTGTCAATCCCAGATAG+CGG | + | chr4.2:50604773-50604792 | MS.gene98636:intron | 40.0% | |
| CTCTCAAGTACTCATCAACT+TGG | - | chr4.2:50604488-50604507 | None:intergenic | 40.0% | |
| GAAGACCATATTCGACAACA+GGG | - | chr4.2:50602918-50602937 | None:intergenic | 40.0% | |
| GATACGCTATTTAGCACAGA+TGG | + | chr4.2:50604657-50604676 | MS.gene98636:intron | 40.0% | |
| GATGAGTACTTGAGAGTGAA+GGG | + | chr4.2:50604492-50604511 | MS.gene98636:CDS | 40.0% | |
| GATTACTGTCCTTTCTGCAA+AGG | - | chr4.2:50603311-50603330 | None:intergenic | 40.0% | |
| GATTCCATGGGCAAGTTTAA+GGG | + | chr4.2:50603270-50603289 | MS.gene98636:CDS | 40.0% | |
| GGAGCGAAAGAACGTAAATT+AGG | + | chr4.2:50604965-50604984 | MS.gene98636:CDS | 40.0% | |
| GGGAAAACAAGAAAGGGATT+AGG | + | chr4.2:50605115-50605134 | MS.gene98636:CDS | 40.0% | |
| GTCAGGAGATAAGTAAAGAC+TGG | - | chr4.2:50602611-50602630 | None:intergenic | 40.0% | |
| TAGAATCGTGATGTGTGACT+AGG | - | chr4.2:50602881-50602900 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTATAGTAG+CGG | + | chr4.2:50604607-50604626 | MS.gene98636:intron | 40.0% | |
| TCGTGGACCGCAATTTAAAA+CGG | + | chr4.2:50603123-50603142 | MS.gene98636:intron | 40.0% | |
| TGAAGACCATATTCGACAAC+AGG | - | chr4.2:50602919-50602938 | None:intergenic | 40.0% | |
| TGATGAGTACTTGAGAGTGA+AGG | + | chr4.2:50604491-50604510 | MS.gene98636:CDS | 40.0% | |
| TGTTATCGCAACTGGTCATA+CGG | + | chr4.2:50603441-50603460 | MS.gene98636:CDS | 40.0% | |
| ! | AAACAAGGAGTGTATGCACA+AGG | + | chr4.2:50604896-50604915 | MS.gene98636:CDS | 40.0% |
| ! | AGGAACAACGTTTTCGCTAT+AGG | + | chr4.2:50604516-50604535 | MS.gene98636:CDS | 40.0% |
| ! | ATGATTTGGATGGTCATGGA+AGG | + | chr4.2:50604460-50604479 | MS.gene98636:CDS | 40.0% |
| ! | CATGCATTGATGTCAGTTAG+TGG | + | chr4.2:50604595-50604614 | MS.gene98636:intron | 40.0% |
| ! | TAGTAATCTAGAGTTCGGTC+AGG | - | chr4.2:50602628-50602647 | None:intergenic | 40.0% |
| !! | AAGTCTTTCGGTCCTTGTTT+TGG | - | chr4.2:50603476-50603495 | None:intergenic | 40.0% |
| !!! | AGTCTTTCGGTCCTTGTTTT+GGG | - | chr4.2:50603475-50603494 | None:intergenic | 40.0% |
| !!! | GCACGTTCAGTTTTGATTGT+CGG | + | chr4.2:50604126-50604145 | MS.gene98636:CDS | 40.0% |
| !!! | GGTTAAGGATGTTTTGGTCA+GGG | - | chr4.2:50602590-50602609 | None:intergenic | 40.0% |
| !!! | GTTAAGGATGTTTTGGTCAG+GGG | - | chr4.2:50602589-50602608 | None:intergenic | 40.0% |
| !!! | TGGTTAAGGATGTTTTGGTC+AGG | - | chr4.2:50602591-50602610 | None:intergenic | 40.0% |
| ACAATTGTTGGAAGGCTTCC+TGG | + | chr4.2:50605064-50605083 | MS.gene98636:CDS | 45.0% | |
| ACTGTCCTTTCTGCAAAGGA+TGG | - | chr4.2:50603307-50603326 | None:intergenic | 45.0% | |
| AGTACTTGAGAGTGAAGGGA+AGG | + | chr4.2:50604496-50604515 | MS.gene98636:CDS | 45.0% | |
| ATGGGCAAGTTTAAGGGCAA+TGG | + | chr4.2:50603276-50603295 | MS.gene98636:CDS | 45.0% | |
| ATTGCCCTTAAACTTGCCCA+TGG | - | chr4.2:50603277-50603296 | None:intergenic | 45.0% | |
| CACAGATGGTTTCCAGATAG+TGG | + | chr4.2:50604671-50604690 | MS.gene98636:intron | 45.0% | |
| CAGTTTCGTTACGATGCTGA+TGG | + | chr4.2:50602940-50602959 | MS.gene98636:intron | 45.0% | |
| CCACAAAACAACTGCAATGG+AGG | - | chr4.2:50603659-50603678 | None:intergenic | 45.0% | |
| CGATCTTGATTGCAGCATCA+AGG | - | chr4.2:50603700-50603719 | None:intergenic | 45.0% | |
| CGGAATCTATCCCCAAAACA+AGG | + | chr4.2:50603461-50603480 | MS.gene98636:CDS | 45.0% | |
| CTGTGCTAAATAGCGTATCG+CGG | - | chr4.2:50604656-50604675 | None:intergenic | 45.0% | |
| CTTCCTGGTATGATCAAGTC+TGG | + | chr4.2:50605079-50605098 | MS.gene98636:CDS | 45.0% | |
| GAGAACCCTGTTGTCGAATA+TGG | + | chr4.2:50602910-50602929 | MS.gene98636:intron | 45.0% | |
| TCACACAATCAGCACAATGG+TGG | + | chr4.2:50603830-50603849 | MS.gene98636:intron | 45.0% | |
| TCTCCAGACTTGATCATACC+AGG | - | chr4.2:50605085-50605104 | None:intergenic | 45.0% | |
| TGGGATTGACAATAGCTGAC+AGG | - | chr4.2:50604768-50604787 | None:intergenic | 45.0% | |
| TTTAGAGGTCTTCGCGATTG+CGG | - | chr4.2:50603050-50603069 | None:intergenic | 45.0% | |
| TTTATGTTTGGTCGCAGTCG+TGG | + | chr4.2:50603157-50603176 | MS.gene98636:intron | 45.0% | |
| ! | ATGCTGCTTAAGCCACTATC+TGG | - | chr4.2:50604686-50604705 | None:intergenic | 45.0% |
| ! | TCTGAAGTCTTCACTGCTGA+TGG | + | chr4.2:50603394-50603413 | MS.gene98636:CDS | 45.0% |
| !! | ATTATAGGAGGTGGTGTTGC+TGG | + | chr4.2:50602349-50602368 | MS.gene98636:CDS | 45.0% |
| !! | CCTCCATTGCAGTTGTTTTG+TGG | + | chr4.2:50603656-50603675 | MS.gene98636:intron | 45.0% |
| !!! | ATGTTTTGGTCAGGGGAACT+CGG | - | chr4.2:50602582-50602601 | None:intergenic | 45.0% |
| !!! | CGTTCAGTTTTGATTGTCGG+TGG | + | chr4.2:50604129-50604148 | MS.gene98636:CDS | 45.0% |
| !!! | GTCTTTCGGTCCTTGTTTTG+GGG | - | chr4.2:50603474-50603493 | None:intergenic | 45.0% |
| !!! | TCAGTTTTGATTGTCGGTGG+AGG | + | chr4.2:50604132-50604151 | MS.gene98636:CDS | 45.0% |
| GACAGGTCAATCCCAGATAG+CGG | - | chr4.2:50604751-50604770 | None:intergenic | 50.0% | |
| GGCAAGTTTAAGGGCAATGG+TGG | + | chr4.2:50603279-50603298 | MS.gene98636:CDS | 50.0% | |
| TCAATCAGGGTTTCAAGCCG+TGG | + | chr4.2:50603578-50603597 | MS.gene98636:intron | 50.0% | |
| TGGAGCCATCCTTTGCAGAA+AGG | + | chr4.2:50603299-50603318 | MS.gene98636:CDS | 50.0% | |
| TGGATTGAGATTGGACGGTC+CGG | - | chr4.2:50603935-50603954 | None:intergenic | 50.0% | |
| ! | GGAAACCACTTGCTACAGCA+TGG | + | chr4.2:50604415-50604434 | MS.gene98636:CDS | 50.0% |
| !! | GACGGTCCGGATTTCAAGTT+CGG | - | chr4.2:50603922-50603941 | None:intergenic | 50.0% |
| ATTGTCGGTGGAGGTCCAAC+TGG | + | chr4.2:50604141-50604160 | MS.gene98636:CDS | 55.0% | |
| CAAGGATCGCTACACGACCA+CGG | - | chr4.2:50603598-50603617 | None:intergenic | 55.0% | |
| CCAAGCCATGCTGTAGCAAG+TGG | - | chr4.2:50604423-50604442 | None:intergenic | 55.0% | |
| CGAGCTAGCAGCAGAGATTG+CGG | + | chr4.2:50604167-50604186 | MS.gene98636:CDS | 55.0% | |
| TGCAGCTGCAATTGCTGTCG+TGG | + | chr4.2:50603106-50603125 | MS.gene98636:intron | 55.0% | |
| ! | CCACTTGCTACAGCATGGCT+TGG | + | chr4.2:50604420-50604439 | MS.gene98636:CDS | 55.0% |
| GCTGCTAGCTCGACACCAGT+TGG | - | chr4.2:50604159-50604178 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 50602328 | 50605165 | 50602328 | ID=MS.gene98636 |
| chr4.2 | mRNA | 50602328 | 50605165 | 50602328 | ID=MS.gene98636.t1;Parent=MS.gene98636 |
| chr4.2 | exon | 50602328 | 50602425 | 50602328 | ID=MS.gene98636.t1.exon1;Parent=MS.gene98636.t1 |
| chr4.2 | CDS | 50602328 | 50602425 | 50602328 | ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1 |
| chr4.2 | exon | 50603255 | 50603511 | 50603255 | ID=MS.gene98636.t1.exon2;Parent=MS.gene98636.t1 |
| chr4.2 | CDS | 50603255 | 50603511 | 50603255 | ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1 |
| chr4.2 | exon | 50604106 | 50604557 | 50604106 | ID=MS.gene98636.t1.exon3;Parent=MS.gene98636.t1 |
| chr4.2 | CDS | 50604106 | 50604557 | 50604106 | ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1 |
| chr4.2 | exon | 50604890 | 50605165 | 50604890 | ID=MS.gene98636.t1.exon4;Parent=MS.gene98636.t1 |
| chr4.2 | CDS | 50604890 | 50605165 | 50604890 | ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1 |
| Gene Sequence |
| Protein sequence |
