AlfalfaGEDB | MS.gene98636

M. sativa cultivar XinJiangDaYe / MS.gene98636

KEGG: K22745
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF07992.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98636.t1	XP_013455748.1	97.8	360	8	0	1	360	1	360	1.80E-197	698.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98636.t1	Q54NS9	33.1	375	215	9	3	346	27	396	5.2e-44	179.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98636.t1	A0A072UJ51	97.8	360	8	0	1	360	1	360	1.3e-197	698.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene98636	0.821657	3.59E-53	-1.69E-46
MS.gene049182	MS.gene98636	0.863114	3.14E-64	-1.69E-46
MS.gene049197	MS.gene98636	0.8014	9.17E-49	-1.69E-46
MS.gene049283	MS.gene98636	0.802736	4.87E-49	-1.69E-46
MS.gene049499	MS.gene98636	0.808171	3.53E-50	-1.69E-46
MS.gene050379	MS.gene98636	0.845482	3.95E-59	-1.69E-46
MS.gene050559	MS.gene98636	0.800509	1.39E-48	-1.69E-46
MS.gene050945	MS.gene98636	0.825798	3.85E-54	-1.69E-46
MS.gene051019	MS.gene98636	0.821524	3.86E-53	-1.69E-46
MS.gene051132	MS.gene98636	0.80684	6.77E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98636.t1	MTR_4g051622	97.778	360	8	0	1	360	1	360	0.0	717
MS.gene98636.t1	MTR_4g051645	67.416	356	114	2	3	357	6	360	0.0	505
MS.gene98636.t1	MTR_2g061440	55.000	80	36	0	138	217	193	272	8.28e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98636.t1	AT5G22140	64.972	354	123	1	4	357	12	364	2.90e-170	479
MS.gene98636.t1	AT3G44190	62.994	354	130	1	4	357	12	364	8.56e-169	475
MS.gene98636.t1	AT3G44190	63.344	311	113	1	47	357	1	310	2.12e-146	416
MS.gene98636.t1	AT5G22140	64.309	311	110	1	47	357	1	310	3.31e-146	416

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Find 68 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGAGTGTATGCACA+AGG	0.668753	4.2:+50604896	MS.gene98636:CDS
AAAGATGATTTGGATGGTCA+TGG	0.566723	4.2:+50604456	MS.gene98636:CDS
AAAGTGACTATAGTGCATAA+AGG	0.487929	4.2:+50604207	MS.gene98636:CDS
AAAGTTGTGATTATAGGAGG+TGG	0.565821	4.2:+50602340	MS.gene98636:CDS
AAGAAAGTTGTGATTATAGG+AGG	0.578925	4.2:+50602337	MS.gene98636:CDS
AAGTCTGGAGATTTGTTTGT+TGG	0.437062	4.2:+50605094	MS.gene98636:CDS
AAGTCTTTCGGTCCTTGTTT+TGG	0.248727	4.2:-50603473	None:intergenic
AATCTGAAACTATTGATAGA+AGG	0.453316	4.2:+50604941	MS.gene98636:CDS
AATGTCTTTCTTGAAGCTTT+TGG	0.265463	4.2:-50604255	None:intergenic
ACAATTGTTGGAAGGCTTCC+TGG	0.324524	4.2:+50605064	MS.gene98636:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACTATAGTGCATAA+AGG	+	chr4.2:50604207-50604226	MS.gene98636:CDS	30.0%
AAGAAAGTTGTGATTATAGG+AGG	+	chr4.2:50602337-50602356	MS.gene98636:CDS	30.0%
AATGATTGTTGGATTGAGAT+TGG	-	chr4.2:50603944-50603963	None:intergenic	30.0%
ACGTAAATTAGGTACTTACA+AGG	+	chr4.2:50604976-50604995	MS.gene98636:CDS	30.0%
ACTCCTTCACAAATGAAAAT+AGG	+	chr4.2:50604334-50604353	MS.gene98636:CDS	30.0%
AGTGAAACAATAGATATTGG+TGG	-	chr4.2:50605007-50605026	None:intergenic	30.0%
ATAAAACCGAACTTGAAATC+CGG	+	chr4.2:50603913-50603932	MS.gene98636:intron	30.0%
ATGCAGAGTGATTGTTTATT+TGG	+	chr4.2:50602779-50602798	MS.gene98636:intron	30.0%
CAACTGATCAAATATCAATC+AGG	+	chr4.2:50603564-50603583	MS.gene98636:intron	30.0%
CACACAACTTGACATAAATT+AGG	-	chr4.2:50604025-50604044	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	50602328	50605165	50602328	ID=MS.gene98636
chr4.2	mRNA	50602328	50605165	50602328	ID=MS.gene98636.t1;Parent=MS.gene98636
chr4.2	exon	50602328	50602425	50602328	ID=MS.gene98636.t1.exon1;Parent=MS.gene98636.t1
chr4.2	CDS	50602328	50602425	50602328	ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1
chr4.2	exon	50603255	50603511	50603255	ID=MS.gene98636.t1.exon2;Parent=MS.gene98636.t1
chr4.2	CDS	50603255	50603511	50603255	ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1
chr4.2	exon	50604106	50604557	50604106	ID=MS.gene98636.t1.exon3;Parent=MS.gene98636.t1
chr4.2	CDS	50604106	50604557	50604106	ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1
chr4.2	exon	50604890	50605165	50604890	ID=MS.gene98636.t1.exon4;Parent=MS.gene98636.t1
chr4.2	CDS	50604890	50605165	50604890	ID=cds.MS.gene98636.t1;Parent=MS.gene98636.t1

Gene Sequence

>MS.gene98636

ATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGTGAGCTCTCTCTTTCTTTCTTTGTAGTTCAATTCAATCCATGCTCTTTTTTTTTTTTTTTTTTCTGTTTAATTCAGTTTTGTATGCTTGATTTTTATAGTTTGTGTTAAATTTAATTTGAATGGTAACTAAAATAATATCGATTGGAAGTTTCCGAGTTCCCCTGACCAAAACATCCTTAACCAGTCTTTACTTATCTCCTGACCGAACTCTAGATTACTATAGTCTTTCTCTATGAATTGGAGGGTTAAAAGAAAAAAGTTGAATGTTAGTTTAGAATTTTGATATGGTACTGGAGTGTGCTCTCTTAGAATTAAACATAAGAAAGTGTTATAATAAGCTTATAATATTTCATGCAGAGTGATTGTTTATTTGGTAAATAAGTAATTGATTTTTCAAATTCTGACTAAGAGCCACTGTATATATAGACATCAGGATTTTAAAATCGTAATCCTAGTCACACATCACGATTCTAGCTGTTATAGAGAACCCTGTTGTCGAATATGGTCTTCATCAGTTTCGTTACGATGCTGATGGTTTTAAATTGAGGTTGCAGTCGTGATTACTATGCTACAATCTTTTATTATTGTAGTAAAATGTTGACGAATTCTGTTGATGTGACCGCAATCGCGAAGACCTCTAAAAAATTTATATTATGAAGATCTCTAAAACCTTTATAATGCAGCTGCAATTGCTGTCGTGGACCGCAATTTAAAACGGTACCGTAGAATTTTATGTTTGGTCGCAGTCGTGGATTCTTAGTTAAAACTGTACACGAAACTTTTAGTGTAAAGTGGTTATAGTGACTAATAAGAGTTGTTGAACACAGGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTAAGGGCAATGGTGGAGCCATCCTTTGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAACTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGGTAAGCAATGATACTTAGTGGTAACTCTCTAGGCTTTAGAAATATCTAATTTCAACTGATCAAATATCAATCAGGGTTTCAAGCCGTGGTCGTGTAGCGATCCTTGATATTGTAAGAAATCACAGTTAGATACTGCTGATGCGACCTCCATTGCAGTTGTTTTGTGGTTTCTGAGACATTGAAAACCTTGATGCTGCAATCAAGATCGCAATCGAAGACCTTTGTTTCAAGACTCTCTATAACCCTTGATCTTGCATTTGATCAAAGTTCCACCATACTATTAATTGCTAGAATTTGGATTTCCTACCATCAATAATCTCACACAATCAGCACAATGGTGGCCGTTTGCTTGAGATTGAACTGTCCATATTTCAATACAGATTTTTTATTTGTTAAAATCTATAAAACCGAACTTGAAATCCGGACCGTCCAATCTCAATCCAACAATCATTGATGTGTTTAATGTGTGAGATTGTTGACTATAGACAATCCGATTTCAAATTCCAATTGCCTAATTTATGTCAAGTTGTGTGAAAGATTTTCAATGTATAAATTCCATTTGAGTGATGAGGAATTCTTTTCTTTCGATGACAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGACAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAACAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACATATCAAACTTCAGTTGGAGAGAGTATAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTGCTACAGCATGGCTTGGTGAAACTTTTCTGAAAGATGATTTGGATGGTCATGGAAGGATCCAAGTTGATGAGTACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATAGGAGACATTACAGATATTCAAGTAAGTGCTTACCAATAAAAGATATATGAATAAGCACCATGCATTGATGTCAGTTAGTGGCTATAGTAGCGGAATTTGAACAATTGTCTATTGATCCGCGATACGCTATTTAGCACAGATGGTTTCCAGATAGTGGCTTAAGCAGCATTATAGCATTGTATCATAGGAGAATTTGAACAACTGATATTTTCCGCTATCTGGGATTGACCTGTCAGCTATTGTCAATCCCAGATAGCGGAAAATAACAGTATTAAAACCTTTCACTTTCGGTATTTTCACGCAATCCTAGTTAATACAAAATTTTGATTTGAAAATTGAATTATATGTTACAGGAAATAAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACTTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGAAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGGCTTCCTGGTATGATCAAGTCTGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGACTTGAACCTAATGTTAAAAAATCTTAA

Protein sequence

>MS.gene98636.t1

MVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISTAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESIEADTHFLCIGKPLATAWLGETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKKS