Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051187.t1 | XP_013463505.1 | 83.4 | 326 | 0 | 1 | 1 | 272 | 1 | 326 | 1.00E-139 | 506.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051187.t1 | Q8GZ92 | 50.8 | 360 | 87 | 8 | 1 | 272 | 1 | 358 | 9.5e-78 | 291.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051187.t1 | A0A072VHA9 | 83.4 | 326 | 0 | 1 | 1 | 272 | 1 | 326 | 7.4e-140 | 506.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051187 | MS.gene22538 | 0.820739 | 5.85E-53 | -1.69E-46 |
MS.gene051187 | MS.gene72543 | 0.801675 | 8.05E-49 | -1.69E-46 |
MS.gene051187 | MS.gene77734 | 0.807385 | 5.19E-50 | -1.69E-46 |
MS.gene051187 | MS.gene78065 | 0.809275 | 2.05E-50 | -1.69E-46 |
MS.gene051187 | MS.gene79951 | 0.814282 | 1.67E-51 | -1.69E-46 |
MS.gene051187 | MS.gene85066 | 0.803937 | 2.75E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051187.t1 | MTR_2g041170 | 82.822 | 326 | 2 | 2 | 1 | 272 | 1 | 326 | 1.13e-180 | 501 |
MS.gene051187.t1 | MTR_8g019620 | 51.003 | 349 | 88 | 8 | 1 | 272 | 1 | 343 | 1.02e-105 | 312 |
MS.gene051187.t1 | MTR_8g071220 | 46.429 | 196 | 59 | 8 | 83 | 272 | 152 | 307 | 2.52e-41 | 145 |
MS.gene051187.t1 | MTR_5g026970 | 39.286 | 196 | 71 | 5 | 83 | 272 | 75 | 228 | 3.93e-35 | 127 |
MS.gene051187.t1 | MTR_5g026970 | 38.776 | 196 | 72 | 5 | 83 | 272 | 153 | 306 | 7.52e-35 | 128 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051187.t1 | AT5G20540 | 50.833 | 360 | 87 | 8 | 1 | 272 | 1 | 358 | 6.27e-98 | 293 |
MS.gene051187.t1 | AT3G14000 | 43.978 | 357 | 106 | 9 | 1 | 272 | 1 | 348 | 3.64e-82 | 252 |
MS.gene051187.t1 | AT3G14000 | 43.978 | 357 | 106 | 9 | 1 | 272 | 1 | 348 | 3.64e-82 | 252 |
MS.gene051187.t1 | AT1G54180 | 42.407 | 349 | 93 | 9 | 1 | 272 | 1 | 318 | 2.24e-76 | 236 |
MS.gene051187.t1 | AT1G54180 | 39.200 | 375 | 94 | 10 | 1 | 272 | 1 | 344 | 2.93e-69 | 219 |
MS.gene051187.t1 | AT1G31880 | 47.368 | 190 | 70 | 5 | 83 | 272 | 159 | 318 | 4.75e-43 | 150 |
MS.gene051187.t1 | AT1G31880 | 47.917 | 192 | 66 | 5 | 83 | 272 | 173 | 332 | 5.24e-43 | 150 |
MS.gene051187.t1 | AT2G35600 | 47.644 | 191 | 57 | 7 | 83 | 272 | 157 | 305 | 6.01e-41 | 144 |
MS.gene051187.t1 | AT2G35600 | 47.644 | 191 | 57 | 7 | 83 | 272 | 157 | 305 | 6.01e-41 | 144 |
MS.gene051187.t1 | AT2G35600 | 47.644 | 191 | 57 | 7 | 83 | 272 | 157 | 305 | 6.01e-41 | 144 |
MS.gene051187.t1 | AT2G21030 | 43.787 | 169 | 61 | 5 | 83 | 249 | 22 | 158 | 6.09e-29 | 108 |
Find 78 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGATTGTTGAAACCTTT+GGG | 0.201703 | 2.3:+48673690 | None:intergenic |
GAATCTTCTTCGAGTTTCTT+TGG | 0.221800 | 2.3:+48680467 | None:intergenic |
TTGGTCAGTGGTGGTGTCAC+TGG | 0.272405 | 2.3:+48673842 | None:intergenic |
CCGTTTCGGAGGCGGGTTGC+AGG | 0.299010 | 2.3:+48680341 | None:intergenic |
GCACTGATTGTTGAAACCTT+TGG | 0.347272 | 2.3:+48673689 | None:intergenic |
AGTTTCGGAGGACGAGGACT+TGG | 0.355665 | 2.3:-48680286 | MS.gene051187:CDS |
ATCTCAAGCGGATACGGTTC+AGG | 0.364829 | 2.3:-48680073 | MS.gene051187:intron |
GACATGGCATTGAAAGCTTC+AGG | 0.368472 | 2.3:-48680392 | MS.gene051187:CDS |
TTTCTGACTCGGAGAAGTTT+CGG | 0.382674 | 2.3:-48680301 | MS.gene051187:CDS |
TAAGTCATACTGATAATGTT+TGG | 0.386791 | 2.3:+48673730 | None:intergenic |
ACCTCGTCTTCAGATCTTGC+TGG | 0.388471 | 2.3:+48674655 | None:intergenic |
CGCAATTTATTCCGACCAAC+AGG | 0.409018 | 2.3:-48673806 | MS.gene051187:CDS |
AGATCAGAAGAGTCAGGTTC+AGG | 0.420068 | 2.3:-48673490 | MS.gene051187:CDS |
TCTTCAGATCTTGCTGGAGT+TGG | 0.423708 | 2.3:+48674661 | None:intergenic |
GGTCTATGCCAGGCGGCAAA+AGG | 0.431422 | 2.3:-48673514 | MS.gene051187:CDS |
TCCTCAACCCATTCACTATC+CGG | 0.441147 | 2.3:+48673566 | None:intergenic |
CGACCAACAGGAATGGGAAT+GGG | 0.443580 | 2.3:-48673794 | MS.gene051187:CDS |
CGGAGCCACCGTTTCGGAGG+CGG | 0.452225 | 2.3:+48680333 | None:intergenic |
GTCGCGATATATTTAACAAA+TGG | 0.452492 | 2.3:-48674771 | MS.gene051187:CDS |
GTTTCGGAGGACGAGGACTT+GGG | 0.453927 | 2.3:-48680285 | MS.gene051187:CDS |
GGAGCCACCGTTTCGGAGGC+GGG | 0.454816 | 2.3:+48680334 | None:intergenic |
TTATTCCGACCAACAGGAAT+GGG | 0.458576 | 2.3:-48673800 | MS.gene051187:CDS |
TGGTCAGTGGTGGTGTCACT+GGG | 0.468014 | 2.3:+48673843 | None:intergenic |
CTGACTCGGAGCCACCGTTT+CGG | 0.468024 | 2.3:+48680327 | None:intergenic |
ATTGCGTGATAGTTGTTCCT+TGG | 0.475615 | 2.3:+48673823 | None:intergenic |
GAGTTGGAAGCGGGAAGGCT+TGG | 0.477113 | 2.3:+48674677 | None:intergenic |
TTGGAAGCGGGAAGGCTTGG+CGG | 0.478088 | 2.3:+48674680 | None:intergenic |
GTAACGATCTCAAGCGGATA+CGG | 0.479163 | 2.3:-48680079 | MS.gene051187:CDS |
AGAGAACTATGATAAGGTTA+TGG | 0.488091 | 2.3:-48674728 | MS.gene051187:CDS |
CTAGTGATCCGGATAGTGAA+TGG | 0.493944 | 2.3:-48673574 | MS.gene051187:CDS |
CTGCATTGAGTGTTGATCAT+AGG | 0.502333 | 2.3:+48673754 | None:intergenic |
CATTATCAGTATGACTTAAG+TGG | 0.503249 | 2.3:-48673725 | MS.gene051187:CDS |
AAAGGGAGATCAGAAGAGTC+AGG | 0.507865 | 2.3:-48673496 | MS.gene051187:CDS |
TCTAGAGAAGCTGATCGCTC+TGG | 0.508451 | 2.3:-48673617 | MS.gene051187:CDS |
GATCTTGCTGGAGTTGGAAG+CGG | 0.509553 | 2.3:+48674667 | None:intergenic |
CCTGCAACCCGCCTCCGAAA+CGG | 0.512550 | 2.3:-48680341 | MS.gene051187:CDS |
ATCTTGCTGGAGTTGGAAGC+GGG | 0.512913 | 2.3:+48674668 | None:intergenic |
TTTATTCCGACCAACAGGAA+TGG | 0.522733 | 2.3:-48673801 | MS.gene051187:CDS |
TGGAACTTTACAATGTTCAA+AGG | 0.522894 | 2.3:-48674708 | MS.gene051187:CDS |
GTCTATGCCAGGCGGCAAAA+GGG | 0.525569 | 2.3:-48673513 | MS.gene051187:CDS |
CGAGTCAGAAGTTTCTGACT+CGG | 0.528267 | 2.3:-48680312 | MS.gene051187:CDS |
TACCCCATTCCCATTCCTGT+TGG | 0.532814 | 2.3:+48673791 | None:intergenic |
TTTCGGAGGACGAGGACTTG+GGG | 0.533365 | 2.3:-48680284 | MS.gene051187:CDS |
CTGGTGTTTACATTACCATC+AGG | 0.535325 | 2.3:-48673535 | MS.gene051187:CDS |
AAAGAGTTTAACCACAGCAT+TGG | 0.537364 | 2.3:+48673456 | None:intergenic |
CGGAGAAGTTTCGGAGGACG+AGG | 0.537682 | 2.3:-48680292 | MS.gene051187:CDS |
ACAAATGGCAAGCTCAAAGA+TGG | 0.542072 | 2.3:-48674756 | MS.gene051187:CDS |
GATGAGCAATGCTAGTGATC+CGG | 0.543562 | 2.3:-48673585 | MS.gene051187:CDS |
CCATTCCCATTCCTGTTGGT+CGG | 0.545947 | 2.3:+48673795 | None:intergenic |
CGAGTCAGAAACTTCTGACT+CGG | 0.548367 | 2.3:+48680313 | None:intergenic |
GTGGGCAGAGAACTATGATA+AGG | 0.551197 | 2.3:-48674734 | MS.gene051187:CDS |
CCGACCAACAGGAATGGGAA+TGG | 0.551911 | 2.3:-48673795 | MS.gene051187:CDS |
TGCTGGAGTTGGAAGCGGGA+AGG | 0.553586 | 2.3:+48674672 | None:intergenic |
AATGGCAAGCTCAAAGATGG+TGG | 0.564411 | 2.3:-48674753 | MS.gene051187:CDS |
TCCGGATAGTGAATGGGTTG+AGG | 0.565873 | 2.3:-48673567 | MS.gene051187:CDS |
GCCGCCTGGCATAGACCTGA+TGG | 0.580566 | 2.3:+48673520 | None:intergenic |
AGTTGTTCCTTGGTCAGTGG+TGG | 0.590123 | 2.3:+48673833 | None:intergenic |
AGGCGGGTTGCAGGAGTACA+CGG | 0.595322 | 2.3:+48680350 | None:intergenic |
GACCAACAGGAATGGGAATG+GGG | 0.596999 | 2.3:-48673793 | MS.gene051187:CDS |
TTCGGAGGACGAGGACTTGG+GGG | 0.597418 | 2.3:-48680283 | MS.gene051187:CDS |
ATTACCATCAGGTCTATGCC+AGG | 0.603107 | 2.3:-48673524 | MS.gene051187:CDS |
ACTCGGAGCCACCGTTTCGG+AGG | 0.606185 | 2.3:+48680330 | None:intergenic |
ACTGATTGTTGAAACCTTTG+GGG | 0.610645 | 2.3:+48673691 | None:intergenic |
ATGGCAAGCTCAAAGATGGT+GGG | 0.617913 | 2.3:-48674752 | MS.gene051187:CDS |
GCAACCCGCCTCCGAAACGG+TGG | 0.618150 | 2.3:-48680338 | MS.gene051187:CDS |
AGTGACACCACCACTGACCA+AGG | 0.620546 | 2.3:-48673840 | MS.gene051187:CDS |
TAGTGATCCGGATAGTGAAT+GGG | 0.626102 | 2.3:-48673573 | MS.gene051187:CDS |
CTGACTCGGAGAAGTTTCGG+AGG | 0.640584 | 2.3:-48680298 | MS.gene051187:CDS |
CTGATGGTAATGTAAACACC+AGG | 0.642022 | 2.3:+48673536 | None:intergenic |
GATAGTTGTTCCTTGGTCAG+TGG | 0.649368 | 2.3:+48673830 | None:intergenic |
GTGTTGATCATAGGAATCTG+AGG | 0.660572 | 2.3:+48673763 | None:intergenic |
TGGCATGAACTCGACCCCAA+AGG | 0.664011 | 2.3:-48673705 | MS.gene051187:CDS |
TGGGTTGAGGAAGATGAACC+TGG | 0.668490 | 2.3:-48673554 | MS.gene051187:CDS |
TCCAGCAAGATCTGAAGACG+AGG | 0.678646 | 2.3:-48674656 | MS.gene051187:intron |
GAGGTGGTAACGATCTCAAG+CGG | 0.681808 | 2.3:-48680085 | MS.gene051187:CDS |
GACATGTCAGATAAAAGACA+TGG | 0.696747 | 2.3:-48680408 | MS.gene051187:CDS |
ACCATCAGGTCTATGCCAGG+CGG | 0.705588 | 2.3:-48673521 | MS.gene051187:CDS |
TATGCTATGTACCAATGCTG+TGG | 0.727203 | 2.3:-48673467 | MS.gene051187:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 48673463 | 48680510 | 48673463 | ID=MS.gene051187 |
chr2.3 | mRNA | 48673463 | 48680510 | 48673463 | ID=MS.gene051187.t1;Parent=MS.gene051187 |
chr2.3 | exon | 48680266 | 48680510 | 48680266 | ID=MS.gene051187.t1.exon1;Parent=MS.gene051187.t1 |
chr2.3 | CDS | 48680266 | 48680510 | 48680266 | ID=cds.MS.gene051187.t1;Parent=MS.gene051187.t1 |
chr2.3 | exon | 48680074 | 48680106 | 48680074 | ID=MS.gene051187.t1.exon2;Parent=MS.gene051187.t1 |
chr2.3 | CDS | 48680074 | 48680106 | 48680074 | ID=cds.MS.gene051187.t1;Parent=MS.gene051187.t1 |
chr2.3 | exon | 48674657 | 48674792 | 48674657 | ID=MS.gene051187.t1.exon3;Parent=MS.gene051187.t1 |
chr2.3 | CDS | 48674657 | 48674792 | 48674657 | ID=cds.MS.gene051187.t1;Parent=MS.gene051187.t1 |
chr2.3 | exon | 48673463 | 48673894 | 48673463 | ID=MS.gene051187.t1.exon4;Parent=MS.gene051187.t1 |
chr2.3 | CDS | 48673463 | 48673894 | 48673463 | ID=cds.MS.gene051187.t1;Parent=MS.gene051187.t1 |
Gene Sequence |
Protein sequence |