Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78065.t1 | XP_003605559.2 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 1.10E-207 | 732.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78065.t1 | Q9FHM9 | 75.4 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 1.0e-153 | 544.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78065.t1 | G7JP91 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 7.8e-208 | 732.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene78065 | 0.896298 | 4.22E-76 | -1.69E-46 |
| MS.gene049660 | MS.gene78065 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene050297 | MS.gene78065 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene05054 | MS.gene78065 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene051187 | MS.gene78065 | 0.809275 | 2.05E-50 | -1.69E-46 |
| MS.gene051478 | MS.gene78065 | 0.832137 | 1.12E-55 | -1.69E-46 |
| MS.gene051648 | MS.gene78065 | 0.86348 | 2.42E-64 | -1.69E-46 |
| MS.gene051660 | MS.gene78065 | 0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene052150 | MS.gene78065 | 0.82471 | 6.96E-54 | -1.69E-46 |
| MS.gene052151 | MS.gene78065 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene053536 | MS.gene78065 | 0.828132 | 1.07E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene78065 | 0.823738 | 1.18E-53 | -1.69E-46 |
| MS.gene054614 | MS.gene78065 | 0.807106 | 5.94E-50 | -1.69E-46 |
| MS.gene054999 | MS.gene78065 | 0.828649 | 7.99E-55 | -1.69E-46 |
| MS.gene056704 | MS.gene78065 | 0.839703 | 1.35E-57 | -1.69E-46 |
| MS.gene05709 | MS.gene78065 | 0.824024 | 1.01E-53 | -1.69E-46 |
| MS.gene058197 | MS.gene78065 | 0.80632 | 8.71E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene78065 | 0.801851 | 7.41E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene78065 | 0.806323 | 8.70E-50 | -1.69E-46 |
| MS.gene05866 | MS.gene78065 | 0.817038 | 4.06E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene78065 | 0.821709 | 3.50E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene78065 | 0.802764 | 4.81E-49 | -1.69E-46 |
| MS.gene05930 | MS.gene78065 | 0.807563 | 4.75E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene78065 | 0.827471 | 1.54E-54 | -1.69E-46 |
| MS.gene06057 | MS.gene78065 | 0.807364 | 5.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78065.t1 | MTR_4g033790 | 99.138 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 0.0 | 717 |
| MS.gene78065.t1 | MTR_1g076470 | 63.123 | 301 | 106 | 3 | 50 | 347 | 49 | 347 | 1.02e-129 | 375 |
| MS.gene78065.t1 | MTR_3g074890 | 37.884 | 293 | 163 | 8 | 52 | 341 | 25 | 301 | 1.92e-55 | 183 |
| MS.gene78065.t1 | MTR_5g064345 | 36.149 | 296 | 167 | 8 | 45 | 329 | 16 | 300 | 4.02e-55 | 183 |
| MS.gene78065.t1 | MTR_5g064360 | 36.332 | 289 | 162 | 8 | 52 | 329 | 24 | 301 | 5.51e-55 | 182 |
| MS.gene78065.t1 | MTR_3g074860 | 37.037 | 297 | 160 | 9 | 52 | 341 | 25 | 301 | 1.03e-54 | 181 |
| MS.gene78065.t1 | MTR_5g464340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene78065.t1 | MTR_5g064340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene78065.t1 | MTR_4g094240 | 36.691 | 278 | 158 | 7 | 65 | 340 | 35 | 296 | 2.15e-50 | 170 |
| MS.gene78065.t1 | MTR_2g009070 | 35.816 | 282 | 157 | 8 | 65 | 340 | 37 | 300 | 3.52e-48 | 164 |
| MS.gene78065.t1 | MTR_3g074830 | 38.078 | 281 | 150 | 9 | 65 | 333 | 66 | 334 | 5.01e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78065.t1 | AT5G51550 | 75.449 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 3.08e-180 | 503 |
| MS.gene78065.t1 | AT2G17230 | 57.692 | 312 | 126 | 4 | 40 | 347 | 54 | 363 | 1.27e-120 | 352 |
| MS.gene78065.t1 | AT2G35150 | 54.902 | 306 | 127 | 5 | 50 | 347 | 21 | 323 | 3.18e-106 | 314 |
| MS.gene78065.t1 | AT4G08950 | 36.519 | 293 | 164 | 8 | 60 | 341 | 30 | 311 | 8.06e-50 | 169 |
| MS.gene78065.t1 | AT1G35140 | 32.770 | 296 | 179 | 8 | 55 | 341 | 22 | 306 | 1.88e-47 | 163 |
| MS.gene78065.t1 | AT5G64260 | 35.915 | 284 | 159 | 8 | 65 | 340 | 33 | 301 | 9.75e-47 | 161 |
| MS.gene78065.t1 | AT5G09440 | 35.581 | 267 | 141 | 9 | 77 | 340 | 36 | 274 | 5.74e-37 | 134 |
| MS.gene78065.t1 | AT3G02970 | 25.249 | 301 | 183 | 10 | 77 | 343 | 39 | 331 | 4.73e-20 | 90.1 |
Find 99 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGTGTGAGGGTATTTA+TGG | 0.202112 | 4.1:-64692070 | MS.gene78065:CDS |
| ATCTTATACGGGACAGGTTT+TGG | 0.231495 | 4.1:-64692032 | MS.gene78065:CDS |
| TGATGAACCTTCATATTTCT+TGG | 0.232481 | 4.1:+64692783 | None:intergenic |
| ATACAATTTGGTACGGTAAT+TGG | 0.234330 | 4.1:-64692702 | MS.gene78065:CDS |
| TCATAACCGTTCATACAATT+TGG | 0.244821 | 4.1:-64692714 | MS.gene78065:CDS |
| AAACCACTTCTAGGGTTTAT+AGG | 0.259480 | 4.1:+64692427 | None:intergenic |
| AAGAGATATAAACCACTTCT+AGG | 0.279278 | 4.1:+64692418 | None:intergenic |
| TTTACATTTCCTTCACTTGT+TGG | 0.297918 | 4.1:-64692334 | MS.gene78065:CDS |
| ACACCTCATCCTTCAGTTTC+CGG | 0.298564 | 4.1:-64692622 | MS.gene78065:CDS |
| GGGAGAGGAGGAGGATGGTG+AGG | 0.312687 | 4.1:+64692890 | None:intergenic |
| TCATTATTAGGTGATTTAAA+AGG | 0.321946 | 4.1:+64692211 | None:intergenic |
| TCAACTCCAACATCATTATT+AGG | 0.325164 | 4.1:+64692199 | None:intergenic |
| GATTTAAAAGGTTTCACATT+AGG | 0.332223 | 4.1:+64692223 | None:intergenic |
| GGTATTTATGGAACTGGTGG+GGG | 0.340078 | 4.1:-64692058 | MS.gene78065:CDS |
| ATTGAATAGATAAACGAGTT+AGG | 0.346295 | 4.1:+64692491 | None:intergenic |
| TTGGCTAATGCTTGGTATGC+TGG | 0.365288 | 4.1:-64692124 | MS.gene78065:CDS |
| GTTATGATGTTTGTTAAAAC+AGG | 0.366999 | 4.1:+64692730 | None:intergenic |
| CTTCTAGGGTTTATAGGTAA+TGG | 0.370465 | 4.1:+64692433 | None:intergenic |
| TATCAATGATCAAGAGCATT+AGG | 0.373851 | 4.1:+64691914 | None:intergenic |
| ATCCTTCAGTTTCCGGTTGG+TGG | 0.375376 | 4.1:-64692615 | MS.gene78065:CDS |
| AGAGGAGGAGGATGGTGAGG+GGG | 0.378705 | 4.1:+64692893 | None:intergenic |
| CAAGGACGGTAGCAGGTTAC+TGG | 0.379884 | 4.1:+64692853 | None:intergenic |
| GAGAGGAGGAGGATGGTGAG+GGG | 0.384614 | 4.1:+64692892 | None:intergenic |
| GCAATTTCCACTGGAAAACT+TGG | 0.385252 | 4.1:+64692094 | None:intergenic |
| GTTACACCTTACCTTATGCT+TGG | 0.398067 | 4.1:-64692312 | MS.gene78065:CDS |
| AATAATGATGTTGGAGTTGA+TGG | 0.404139 | 4.1:-64692196 | MS.gene78065:CDS |
| ATAATATGAATGGGATTAGA+AGG | 0.405760 | 4.1:-64691988 | MS.gene78065:CDS |
| TTACACCTTACCTTATGCTT+GGG | 0.413996 | 4.1:-64692311 | MS.gene78065:CDS |
| GGAGAGGAGGAGGATGGTGA+GGG | 0.416490 | 4.1:+64692891 | None:intergenic |
| TTGAATAGATAAACGAGTTA+GGG | 0.419432 | 4.1:+64692492 | None:intergenic |
| CATCAGAGTTTGTAAAACTA+AGG | 0.422535 | 4.1:-64692765 | MS.gene78065:CDS |
| TGTGAGGGTATTTATGGAAC+TGG | 0.428097 | 4.1:-64692064 | MS.gene78065:CDS |
| CACCGTGTACGGTGGTGGTT+GGG | 0.439165 | 4.1:+64692921 | None:intergenic |
| ATGCTTTACACTGATCAAAC+CGG | 0.447179 | 4.1:-64692583 | MS.gene78065:CDS |
| ACCTTACCTTATGCTTGGGT+TGG | 0.460545 | 4.1:-64692307 | MS.gene78065:CDS |
| AAATCACCTAATAATGATGT+TGG | 0.461585 | 4.1:-64692205 | MS.gene78065:CDS |
| CCGTGAGGAGGGAGAGGAGG+AGG | 0.466174 | 4.1:+64692881 | None:intergenic |
| AGGGTATTTATGGAACTGGT+GGG | 0.467908 | 4.1:-64692060 | MS.gene78065:CDS |
| TGAGCTGGCAAGTAACCCTT+TGG | 0.476541 | 4.1:-64692143 | MS.gene78065:CDS |
| CAGTAACCTGCTACCGTCCT+TGG | 0.478495 | 4.1:-64692852 | MS.gene78065:CDS |
| CCACCGTGTACGGTGGTGGT+TGG | 0.480199 | 4.1:+64692920 | None:intergenic |
| TTGTGGCCAAGGACGGTAGC+AGG | 0.487003 | 4.1:+64692846 | None:intergenic |
| AACATAACAGATTACGCCTT+CGG | 0.493579 | 4.1:-64692811 | MS.gene78065:CDS |
| AGAGCCACCGTGTACGGTGG+TGG | 0.496136 | 4.1:+64692916 | None:intergenic |
| GATGGTATGATAAGTGTGAT+AGG | 0.498355 | 4.1:-64692178 | MS.gene78065:CDS |
| AGGACATGAACTTGCTGAGC+TGG | 0.501455 | 4.1:-64692158 | MS.gene78065:CDS |
| CCACCGTGAGGAGGGAGAGG+AGG | 0.502559 | 4.1:+64692878 | None:intergenic |
| CTCATCCTTCAGTTTCCGGT+TGG | 0.502732 | 4.1:-64692618 | MS.gene78065:CDS |
| GGAGCTTCCAAGAAATATGA+AGG | 0.503271 | 4.1:-64692790 | MS.gene78065:CDS |
| CGTGTTTGAGATATTAGACC+CGG | 0.510220 | 4.1:+64692564 | None:intergenic |
| ATATTTCTTGGAAGCTCCGA+AGG | 0.513332 | 4.1:+64692795 | None:intergenic |
| CGGTGGTGGTTGGGTAGGTG+AGG | 0.513909 | 4.1:+64692930 | None:intergenic |
| GTGCCACGTATAATATGAAT+GGG | 0.514329 | 4.1:-64691997 | MS.gene78065:CDS |
| GTAACCCTTTGGCTAATGCT+TGG | 0.515118 | 4.1:-64692132 | MS.gene78065:CDS |
| CTATTACCAACCCAAGCATA+AGG | 0.521989 | 4.1:+64692301 | None:intergenic |
| TTGATCAGTGTAAAGCATAA+CGG | 0.523242 | 4.1:+64692588 | None:intergenic |
| ATCTCAAACACGGTTCATCT+AGG | 0.532471 | 4.1:-64692553 | MS.gene78065:CDS |
| GGTGCCACGTATAATATGAA+TGG | 0.532803 | 4.1:-64691998 | MS.gene78065:CDS |
| GAGGGTATTTATGGAACTGG+TGG | 0.535445 | 4.1:-64692061 | MS.gene78065:CDS |
| CCTCCTCCTCTCCCTCCTCA+CGG | 0.539621 | 4.1:-64692881 | MS.gene78065:CDS |
| ACCGTTCATACAATTTGGTA+CGG | 0.540027 | 4.1:-64692709 | MS.gene78065:CDS |
| GGGTGGATCTTATACGGGAC+AGG | 0.540517 | 4.1:-64692038 | MS.gene78065:CDS |
| CATACCAAGCATTAGCCAAA+GGG | 0.541904 | 4.1:+64692128 | None:intergenic |
| GATCCACCGTGAGGAGGGAG+AGG | 0.544015 | 4.1:+64692875 | None:intergenic |
| TACTGGATCCACCGTGAGGA+GGG | 0.544030 | 4.1:+64692870 | None:intergenic |
| ACCGTACCAAATTGTATGAA+CGG | 0.544036 | 4.1:+64692708 | None:intergenic |
| AGAGATATAAACCACTTCTA+GGG | 0.547947 | 4.1:+64692419 | None:intergenic |
| CACAAATCAGCAATTTCCAC+TGG | 0.549035 | 4.1:+64692085 | None:intergenic |
| GATTTCTGCACGTCAGCATG+TGG | 0.549435 | 4.1:-64692367 | MS.gene78065:CDS |
| GAGGAGGGAGAGGAGGAGGA+TGG | 0.553650 | 4.1:+64692885 | None:intergenic |
| CATAAACTGTGGAACAGCGT+AGG | 0.563772 | 4.1:+64692246 | None:intergenic |
| ATAAACTGTGGAACAGCGTA+GGG | 0.565866 | 4.1:+64692247 | None:intergenic |
| GCTAATGCTTGGTATGCTGG+TGG | 0.566404 | 4.1:-64692121 | MS.gene78065:CDS |
| GGGAGAGCCACCGTGTACGG+TGG | 0.569795 | 4.1:+64692913 | None:intergenic |
| GCATACCAAGCATTAGCCAA+AGG | 0.572741 | 4.1:+64692127 | None:intergenic |
| GTGTACGGTGGTGGTTGGGT+AGG | 0.577747 | 4.1:+64692925 | None:intergenic |
| TACCCAACCACCACCGTACA+CGG | 0.578010 | 4.1:-64692923 | MS.gene78065:CDS |
| ACCAACCCAAGCATAAGGTA+AGG | 0.583852 | 4.1:+64692306 | None:intergenic |
| TTACCTATAAACCCTAGAAG+TGG | 0.584847 | 4.1:-64692430 | MS.gene78065:CDS |
| TTCCACCAACCGGAAACTGA+AGG | 0.593014 | 4.1:+64692613 | None:intergenic |
| GGGTATTTATGGAACTGGTG+GGG | 0.593523 | 4.1:-64692059 | MS.gene78065:CDS |
| AATAGTGAGAAATTCTGTGC+GGG | 0.595168 | 4.1:-64692283 | MS.gene78065:CDS |
| TGCTTTACACTGATCAAACC+GGG | 0.595325 | 4.1:-64692582 | MS.gene78065:CDS |
| AAGGTGTAACCAACAAGTGA+AGG | 0.610334 | 4.1:+64692325 | None:intergenic |
| CAACCGGAAACTGAAGGATG+AGG | 0.620599 | 4.1:+64692619 | None:intergenic |
| TTACTGGATCCACCGTGAGG+AGG | 0.627466 | 4.1:+64692869 | None:intergenic |
| GAAATTGCTGATTTGTGTGA+GGG | 0.629876 | 4.1:-64692079 | MS.gene78065:CDS |
| TGTAAAACTAAGGTACCACA+TGG | 0.633747 | 4.1:-64692755 | MS.gene78065:CDS |
| ATTTCTGCACGTCAGCATGT+GGG | 0.635740 | 4.1:-64692366 | MS.gene78065:CDS |
| CGGGTCTAATATCTCAAACA+CGG | 0.644523 | 4.1:-64692563 | MS.gene78065:CDS |
| CCTCCTCTCCCTCCTCACGG+TGG | 0.665686 | 4.1:-64692878 | MS.gene78065:CDS |
| GGAAATTGCTGATTTGTGTG+AGG | 0.676757 | 4.1:-64692080 | MS.gene78065:CDS |
| TTCACATTAGGCATAAACTG+TGG | 0.683349 | 4.1:+64692235 | None:intergenic |
| TTGTTAAAACAGGTCCCATG+TGG | 0.691037 | 4.1:+64692740 | None:intergenic |
| AATCCCATTCATATTATACG+TGG | 0.705015 | 4.1:+64691994 | None:intergenic |
| AGGTTACTGGATCCACCGTG+AGG | 0.732047 | 4.1:+64692866 | None:intergenic |
| TAATAGTGAGAAATTCTGTG+CGG | 0.740718 | 4.1:-64692284 | MS.gene78065:CDS |
| CCAACCACCACCGTACACGG+TGG | 0.746729 | 4.1:-64692920 | MS.gene78065:CDS |
| GTAAAACTAAGGTACCACAT+GGG | 0.766148 | 4.1:-64692754 | MS.gene78065:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATTAGGTGATTTAAA+AGG | + | chr4.1:64692648-64692667 | None:intergenic | 20.0% |
| !!! | AATCTGTTATGTTTTTTGTA+GGG | + | chr4.1:64692038-64692057 | None:intergenic | 20.0% |
| !!! | TAATCTGTTATGTTTTTTGT+AGG | + | chr4.1:64692039-64692058 | None:intergenic | 20.0% |
| !!! | TCTAATAGCACTTTTAATAA+CGG | + | chr4.1:64692391-64692410 | None:intergenic | 20.0% |
| ! | AAATCACCTAATAATGATGT+TGG | - | chr4.1:64692651-64692670 | MS.gene78065:CDS | 25.0% |
| ! | ATAATATGAATGGGATTAGA+AGG | - | chr4.1:64692868-64692887 | MS.gene78065:CDS | 25.0% |
| ! | ATTGAATAGATAAACGAGTT+AGG | + | chr4.1:64692368-64692387 | None:intergenic | 25.0% |
| ! | GATTTAAAAGGTTTCACATT+AGG | + | chr4.1:64692636-64692655 | None:intergenic | 25.0% |
| ! | TTGAATAGATAAACGAGTTA+GGG | + | chr4.1:64692367-64692386 | None:intergenic | 25.0% |
| !! | ACTCACGTATAATTTTCTTT+TGG | + | chr4.1:64692188-64692207 | None:intergenic | 25.0% |
| !! | GTTATGATGTTTGTTAAAAC+AGG | + | chr4.1:64692129-64692148 | None:intergenic | 25.0% |
| !! | TTTTACCATGAGAATAAAAC+CGG | + | chr4.1:64692344-64692363 | None:intergenic | 25.0% |
| !!! | CATGTTTTGAATTATTGTAC+TGG | - | chr4.1:64692918-64692937 | MS.gene78065:CDS | 25.0% |
| AAGAGATATAAACCACTTCT+AGG | + | chr4.1:64692441-64692460 | None:intergenic | 30.0% | |
| AATAATGATGTTGGAGTTGA+TGG | - | chr4.1:64692660-64692679 | MS.gene78065:CDS | 30.0% | |
| AATCCCATTCATATTATACG+TGG | + | chr4.1:64692865-64692884 | None:intergenic | 30.0% | |
| AGAGATATAAACCACTTCTA+GGG | + | chr4.1:64692440-64692459 | None:intergenic | 30.0% | |
| ATACAATTTGGTACGGTAAT+TGG | - | chr4.1:64692154-64692173 | MS.gene78065:CDS | 30.0% | |
| CATCAGAGTTTGTAAAACTA+AGG | - | chr4.1:64692091-64692110 | MS.gene78065:CDS | 30.0% | |
| TAATAGTGAGAAATTCTGTG+CGG | - | chr4.1:64692572-64692591 | MS.gene78065:CDS | 30.0% | |
| TCAACTCCAACATCATTATT+AGG | + | chr4.1:64692660-64692679 | None:intergenic | 30.0% | |
| TCATAACCGTTCATACAATT+TGG | - | chr4.1:64692142-64692161 | MS.gene78065:CDS | 30.0% | |
| TGATGAACCTTCATATTTCT+TGG | + | chr4.1:64692076-64692095 | None:intergenic | 30.0% | |
| TTGATCAGTGTAAAGCATAA+CGG | + | chr4.1:64692271-64692290 | None:intergenic | 30.0% | |
| TTTACATTTCCTTCACTTGT+TGG | - | chr4.1:64692522-64692541 | MS.gene78065:CDS | 30.0% | |
| !!! | ATGTTTTTTGTAGGGTTTTG+TGG | + | chr4.1:64692030-64692049 | None:intergenic | 30.0% |
| AACATAACAGATTACGCCTT+CGG | - | chr4.1:64692045-64692064 | MS.gene78065:CDS | 35.0% | |
| AATAGTGAGAAATTCTGTGC+GGG | - | chr4.1:64692573-64692592 | MS.gene78065:CDS | 35.0% | |
| ACCGTACCAAATTGTATGAA+CGG | + | chr4.1:64692151-64692170 | None:intergenic | 35.0% | |
| ACCGTTCATACAATTTGGTA+CGG | - | chr4.1:64692147-64692166 | MS.gene78065:CDS | 35.0% | |
| ATGCTTTACACTGATCAAAC+CGG | - | chr4.1:64692273-64692292 | MS.gene78065:CDS | 35.0% | |
| GATGGTATGATAAGTGTGAT+AGG | - | chr4.1:64692678-64692697 | MS.gene78065:CDS | 35.0% | |
| GTGCCACGTATAATATGAAT+GGG | - | chr4.1:64692859-64692878 | MS.gene78065:CDS | 35.0% | |
| TAGGTCAAGAAAAAAACGAC+CGG | - | chr4.1:64692322-64692341 | MS.gene78065:CDS | 35.0% | |
| TTACACCTTACCTTATGCTT+GGG | - | chr4.1:64692545-64692564 | MS.gene78065:CDS | 35.0% | |
| TTACCTATAAACCCTAGAAG+TGG | - | chr4.1:64692426-64692445 | MS.gene78065:CDS | 35.0% | |
| TTCACATTAGGCATAAACTG+TGG | + | chr4.1:64692624-64692643 | None:intergenic | 35.0% | |
| ! | GTAAAACTAAGGTACCACAT+GGG | - | chr4.1:64692102-64692121 | MS.gene78065:CDS | 35.0% |
| ! | TGGGATTAGAAGGAAGTTTT+TGG | - | chr4.1:64692878-64692897 | MS.gene78065:CDS | 35.0% |
| ! | TGTAAAACTAAGGTACCACA+TGG | - | chr4.1:64692101-64692120 | MS.gene78065:CDS | 35.0% |
| !! | AAACCACTTCTAGGGTTTAT+AGG | + | chr4.1:64692432-64692451 | None:intergenic | 35.0% |
| !! | CTTCTAGGGTTTATAGGTAA+TGG | + | chr4.1:64692426-64692445 | None:intergenic | 35.0% |
| !! | GAAATTGCTGATTTGTGTGA+GGG | - | chr4.1:64692777-64692796 | MS.gene78065:CDS | 35.0% |
| !! | GATTTGTGTGAGGGTATTTA+TGG | - | chr4.1:64692786-64692805 | MS.gene78065:CDS | 35.0% |
| AAGGTGTAACCAACAAGTGA+AGG | + | chr4.1:64692534-64692553 | None:intergenic | 40.0% | |
| ATAAACTGTGGAACAGCGTA+GGG | + | chr4.1:64692612-64692631 | None:intergenic | 40.0% | |
| ATATTTCTTGGAAGCTCCGA+AGG | + | chr4.1:64692064-64692083 | None:intergenic | 40.0% | |
| ATCTCAAACACGGTTCATCT+AGG | - | chr4.1:64692303-64692322 | MS.gene78065:CDS | 40.0% | |
| CACAAATCAGCAATTTCCAC+TGG | + | chr4.1:64692774-64692793 | None:intergenic | 40.0% | |
| CATACCAAGCATTAGCCAAA+GGG | + | chr4.1:64692731-64692750 | None:intergenic | 40.0% | |
| CGGGTCTAATATCTCAAACA+CGG | - | chr4.1:64692293-64692312 | MS.gene78065:CDS | 40.0% | |
| CTATTACCAACCCAAGCATA+AGG | + | chr4.1:64692558-64692577 | None:intergenic | 40.0% | |
| GCAATTTCCACTGGAAAACT+TGG | + | chr4.1:64692765-64692784 | None:intergenic | 40.0% | |
| GGAGCTTCCAAGAAATATGA+AGG | - | chr4.1:64692066-64692085 | MS.gene78065:CDS | 40.0% | |
| GTTACACCTTACCTTATGCT+TGG | - | chr4.1:64692544-64692563 | MS.gene78065:CDS | 40.0% | |
| TGCTTTACACTGATCAAACC+GGG | - | chr4.1:64692274-64692293 | MS.gene78065:CDS | 40.0% | |
| TTGTTAAAACAGGTCCCATG+TGG | + | chr4.1:64692119-64692138 | None:intergenic | 40.0% | |
| ! | AGGGTATTTATGGAACTGGT+GGG | - | chr4.1:64692796-64692815 | MS.gene78065:CDS | 40.0% |
| ! | ATCTTATACGGGACAGGTTT+TGG | - | chr4.1:64692824-64692843 | MS.gene78065:CDS | 40.0% |
| ! | CGTGTTTGAGATATTAGACC+CGG | + | chr4.1:64692295-64692314 | None:intergenic | 40.0% |
| ! | GGTGCCACGTATAATATGAA+TGG | - | chr4.1:64692858-64692877 | MS.gene78065:CDS | 40.0% |
| ! | TGAAGGATGAGGTGTGTTTT+TGG | + | chr4.1:64692229-64692248 | None:intergenic | 40.0% |
| !! | GGAAATTGCTGATTTGTGTG+AGG | - | chr4.1:64692776-64692795 | MS.gene78065:CDS | 40.0% |
| !! | TGTGAGGGTATTTATGGAAC+TGG | - | chr4.1:64692792-64692811 | MS.gene78065:CDS | 40.0% |
| !!! | AACGACCGGTTTTATTCTCA+TGG | - | chr4.1:64692336-64692355 | MS.gene78065:CDS | 40.0% |
| !!! | AGTTTTTGGTTCAGTGGCTT+TGG | - | chr4.1:64692892-64692911 | MS.gene78065:CDS | 40.0% |
| !!! | CAGGTTTTGGATGATCATGA+TGG | - | chr4.1:64692837-64692856 | MS.gene78065:CDS | 40.0% |
| !!! | GAAGGAAGTTTTTGGTTCAG+TGG | - | chr4.1:64692886-64692905 | MS.gene78065:CDS | 40.0% |
| ACACCTCATCCTTCAGTTTC+CGG | - | chr4.1:64692234-64692253 | MS.gene78065:CDS | 45.0% | |
| ACCAACCCAAGCATAAGGTA+AGG | + | chr4.1:64692553-64692572 | None:intergenic | 45.0% | |
| ACCTTACCTTATGCTTGGGT+TGG | - | chr4.1:64692549-64692568 | MS.gene78065:CDS | 45.0% | |
| ATTTCTGCACGTCAGCATGT+GGG | - | chr4.1:64692490-64692509 | MS.gene78065:CDS | 45.0% | |
| CATAAACTGTGGAACAGCGT+AGG | + | chr4.1:64692613-64692632 | None:intergenic | 45.0% | |
| GCATACCAAGCATTAGCCAA+AGG | + | chr4.1:64692732-64692751 | None:intergenic | 45.0% | |
| GGGTATTTATGGAACTGGTG+GGG | - | chr4.1:64692797-64692816 | MS.gene78065:CDS | 45.0% | |
| GGTATTTATGGAACTGGTGG+GGG | - | chr4.1:64692798-64692817 | MS.gene78065:CDS | 45.0% | |
| GTAACCCTTTGGCTAATGCT+TGG | - | chr4.1:64692724-64692743 | MS.gene78065:CDS | 45.0% | |
| TTGGCTAATGCTTGGTATGC+TGG | - | chr4.1:64692732-64692751 | MS.gene78065:CDS | 45.0% | |
| ! | CATAACGGTTTTCCACCAAC+CGG | + | chr4.1:64692256-64692275 | None:intergenic | 45.0% |
| ! | TGGAGATCCAAGTTTTCCAG+TGG | - | chr4.1:64692755-64692774 | MS.gene78065:CDS | 45.0% |
| !! | GAGGGTATTTATGGAACTGG+TGG | - | chr4.1:64692795-64692814 | MS.gene78065:CDS | 45.0% |
| !! | TTTGTAGGGTTTTGTGGCCA+AGG | + | chr4.1:64692024-64692043 | None:intergenic | 45.0% |
| ATCCTTCAGTTTCCGGTTGG+TGG | - | chr4.1:64692241-64692260 | MS.gene78065:CDS | 50.0% | |
| ATTTATGGAACTGGTGGGGG+TGG | - | chr4.1:64692801-64692820 | MS.gene78065:CDS | 50.0% | |
| CAACCGGAAACTGAAGGATG+AGG | + | chr4.1:64692240-64692259 | None:intergenic | 50.0% | |
| CTCATCCTTCAGTTTCCGGT+TGG | - | chr4.1:64692238-64692257 | MS.gene78065:CDS | 50.0% | |
| GATTTCTGCACGTCAGCATG+TGG | - | chr4.1:64692489-64692508 | MS.gene78065:CDS | 50.0% | |
| GCTAATGCTTGGTATGCTGG+TGG | - | chr4.1:64692735-64692754 | MS.gene78065:CDS | 50.0% | |
| TGAGCTGGCAAGTAACCCTT+TGG | - | chr4.1:64692713-64692732 | MS.gene78065:CDS | 50.0% | |
| TGGTGGGGGTGGATCTTATA+CGG | - | chr4.1:64692812-64692831 | MS.gene78065:CDS | 50.0% | |
| TTCCACCAACCGGAAACTGA+AGG | + | chr4.1:64692246-64692265 | None:intergenic | 50.0% | |
| !! | AGGACATGAACTTGCTGAGC+TGG | - | chr4.1:64692698-64692717 | MS.gene78065:CDS | 50.0% |
| !! | TAGGGTTTTGTGGCCAAGGA+CGG | + | chr4.1:64692020-64692039 | None:intergenic | 50.0% |
| AGGTTACTGGATCCACCGTG+AGG | + | chr4.1:64691993-64692012 | None:intergenic | 55.0% | |
| CAAGGACGGTAGCAGGTTAC+TGG | + | chr4.1:64692006-64692025 | None:intergenic | 55.0% | |
| CAGTAACCTGCTACCGTCCT+TGG | - | chr4.1:64692004-64692023 | MS.gene78065:CDS | 55.0% | |
| GGGTGGATCTTATACGGGAC+AGG | - | chr4.1:64692818-64692837 | MS.gene78065:CDS | 55.0% | |
| GGTGGGGGTGGATCTTATAC+GGG | - | chr4.1:64692813-64692832 | MS.gene78065:CDS | 55.0% | |
| TACCCAACCACCACCGTACA+CGG | - | chr4.1:64691933-64691952 | MS.gene78065:CDS | 55.0% | |
| TACTGGATCCACCGTGAGGA+GGG | + | chr4.1:64691989-64692008 | None:intergenic | 55.0% | |
| TTACTGGATCCACCGTGAGG+AGG | + | chr4.1:64691990-64692009 | None:intergenic | 55.0% | |
| AGAGGAGGAGGATGGTGAGG+GGG | + | chr4.1:64691966-64691985 | None:intergenic | 60.0% | |
| GAGAGGAGGAGGATGGTGAG+GGG | + | chr4.1:64691967-64691986 | None:intergenic | 60.0% | |
| GGAGAGGAGGAGGATGGTGA+GGG | + | chr4.1:64691968-64691987 | None:intergenic | 60.0% | |
| TTGTGGCCAAGGACGGTAGC+AGG | + | chr4.1:64692013-64692032 | None:intergenic | 60.0% | |
| ! | CACCGTGTACGGTGGTGGTT+GGG | + | chr4.1:64691938-64691957 | None:intergenic | 60.0% |
| ! | GTGTACGGTGGTGGTTGGGT+AGG | + | chr4.1:64691934-64691953 | None:intergenic | 60.0% |
| AGAGCCACCGTGTACGGTGG+TGG | + | chr4.1:64691943-64691962 | None:intergenic | 65.0% | |
| AGGGGGAGAGCCACCGTGTA+CGG | + | chr4.1:64691949-64691968 | None:intergenic | 65.0% | |
| CCAACCACCACCGTACACGG+TGG | - | chr4.1:64691936-64691955 | MS.gene78065:CDS | 65.0% | |
| CCTCCTCCTCTCCCTCCTCA+CGG | - | chr4.1:64691975-64691994 | MS.gene78065:CDS | 65.0% | |
| GAGGAGGGAGAGGAGGAGGA+TGG | + | chr4.1:64691974-64691993 | None:intergenic | 65.0% | |
| GATCCACCGTGAGGAGGGAG+AGG | + | chr4.1:64691984-64692003 | None:intergenic | 65.0% | |
| GGGAGAGGAGGAGGATGGTG+AGG | + | chr4.1:64691969-64691988 | None:intergenic | 65.0% | |
| ! | CCACCGTGTACGGTGGTGGT+TGG | + | chr4.1:64691939-64691958 | None:intergenic | 65.0% |
| ! | CGGTGGTGGTTGGGTAGGTG+AGG | + | chr4.1:64691929-64691948 | None:intergenic | 65.0% |
| CCACCGTGAGGAGGGAGAGG+AGG | + | chr4.1:64691981-64692000 | None:intergenic | 70.0% | |
| CCGTGAGGAGGGAGAGGAGG+AGG | + | chr4.1:64691978-64691997 | None:intergenic | 70.0% | |
| CCTCCTCTCCCTCCTCACGG+TGG | - | chr4.1:64691978-64691997 | MS.gene78065:CDS | 70.0% | |
| GGGAGAGCCACCGTGTACGG+TGG | + | chr4.1:64691946-64691965 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 64691916 | 64692962 | 64691916 | ID=MS.gene78065 |
| chr4.1 | mRNA | 64691916 | 64692962 | 64691916 | ID=MS.gene78065.t1;Parent=MS.gene78065 |
| chr4.1 | exon | 64691916 | 64692962 | 64691916 | ID=MS.gene78065.t1.exon1;Parent=MS.gene78065.t1 |
| chr4.1 | CDS | 64691916 | 64692962 | 64691916 | ID=cds.MS.gene78065.t1;Parent=MS.gene78065.t1 |
| Gene Sequence |
| Protein sequence |
