Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77734.t1 | XP_003605559.2 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 1.10E-207 | 732.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77734.t1 | Q9FHM9 | 75.4 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 1.0e-153 | 544.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77734.t1 | G7JP91 | 99.1 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 7.8e-208 | 732.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene77734 | 0.830138 | 3.48E-55 | -1.69E-46 |
| MS.gene049418 | MS.gene77734 | 0.890317 | 1.10E-73 | -1.69E-46 |
| MS.gene049660 | MS.gene77734 | 0.80678 | 6.97E-50 | -1.69E-46 |
| MS.gene050297 | MS.gene77734 | 0.831571 | 1.55E-55 | -1.69E-46 |
| MS.gene051018 | MS.gene77734 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene051067 | MS.gene77734 | 0.809478 | 1.85E-50 | -1.69E-46 |
| MS.gene051187 | MS.gene77734 | 0.807385 | 5.19E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene77734 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene77734 | 0.823093 | 1.67E-53 | -1.69E-46 |
| MS.gene051648 | MS.gene77734 | 0.882283 | 1.19E-70 | -1.69E-46 |
| MS.gene051660 | MS.gene77734 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene052150 | MS.gene77734 | 0.832896 | 7.28E-56 | -1.69E-46 |
| MS.gene052151 | MS.gene77734 | 0.841259 | 5.30E-58 | -1.69E-46 |
| MS.gene053122 | MS.gene77734 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene77734 | 0.830361 | 3.07E-55 | -1.69E-46 |
| MS.gene053536 | MS.gene77734 | 0.855155 | 7.63E-62 | -1.69E-46 |
| MS.gene053538 | MS.gene77734 | 0.852339 | 4.93E-61 | -1.69E-46 |
| MS.gene054584 | MS.gene77734 | 0.822243 | 2.63E-53 | -1.69E-46 |
| MS.gene054999 | MS.gene77734 | 0.824513 | 7.75E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene77734 | 0.830757 | 2.45E-55 | -1.69E-46 |
| MS.gene055764 | MS.gene77734 | 0.824988 | 5.99E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene77734 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene056228 | MS.gene77734 | 0.811812 | 5.81E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene77734 | 0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene056704 | MS.gene77734 | 0.818253 | 2.16E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene77734 | 0.820104 | 8.18E-53 | -1.69E-46 |
| MS.gene05709 | MS.gene77734 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene77734 | 0.819655 | 1.04E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene77734 | 0.815523 | 8.85E-52 | -1.69E-46 |
| MS.gene05866 | MS.gene77734 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene77734 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene059300 | MS.gene77734 | 0.828107 | 1.08E-54 | -1.69E-46 |
| MS.gene059424 | MS.gene77734 | 0.853705 | 2.00E-61 | -1.69E-46 |
| MS.gene060519 | MS.gene77734 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene77734 | 0.833112 | 6.43E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77734.t1 | MTR_4g033790 | 99.138 | 348 | 3 | 0 | 1 | 348 | 1 | 348 | 0.0 | 717 |
| MS.gene77734.t1 | MTR_1g076470 | 63.123 | 301 | 106 | 3 | 50 | 347 | 49 | 347 | 1.02e-129 | 375 |
| MS.gene77734.t1 | MTR_3g074890 | 37.884 | 293 | 163 | 8 | 52 | 341 | 25 | 301 | 1.92e-55 | 183 |
| MS.gene77734.t1 | MTR_5g064345 | 36.149 | 296 | 167 | 8 | 45 | 329 | 16 | 300 | 4.02e-55 | 183 |
| MS.gene77734.t1 | MTR_5g064360 | 36.332 | 289 | 162 | 8 | 52 | 329 | 24 | 301 | 5.51e-55 | 182 |
| MS.gene77734.t1 | MTR_3g074860 | 37.037 | 297 | 160 | 9 | 52 | 341 | 25 | 301 | 1.03e-54 | 181 |
| MS.gene77734.t1 | MTR_5g464340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene77734.t1 | MTR_5g064340 | 35.811 | 296 | 168 | 7 | 45 | 329 | 16 | 300 | 3.87e-54 | 180 |
| MS.gene77734.t1 | MTR_4g094240 | 36.691 | 278 | 158 | 7 | 65 | 340 | 35 | 296 | 2.15e-50 | 170 |
| MS.gene77734.t1 | MTR_2g009070 | 35.816 | 282 | 157 | 8 | 65 | 340 | 37 | 300 | 3.52e-48 | 164 |
| MS.gene77734.t1 | MTR_3g074830 | 38.078 | 281 | 150 | 9 | 65 | 333 | 66 | 334 | 5.01e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77734.t1 | AT5G51550 | 75.449 | 334 | 80 | 1 | 14 | 347 | 6 | 337 | 3.08e-180 | 503 |
| MS.gene77734.t1 | AT2G17230 | 57.692 | 312 | 126 | 4 | 40 | 347 | 54 | 363 | 1.27e-120 | 352 |
| MS.gene77734.t1 | AT2G35150 | 54.902 | 306 | 127 | 5 | 50 | 347 | 21 | 323 | 3.18e-106 | 314 |
| MS.gene77734.t1 | AT4G08950 | 36.519 | 293 | 164 | 8 | 60 | 341 | 30 | 311 | 8.06e-50 | 169 |
| MS.gene77734.t1 | AT1G35140 | 32.770 | 296 | 179 | 8 | 55 | 341 | 22 | 306 | 1.88e-47 | 163 |
| MS.gene77734.t1 | AT5G64260 | 35.915 | 284 | 159 | 8 | 65 | 340 | 33 | 301 | 9.75e-47 | 161 |
| MS.gene77734.t1 | AT5G09440 | 35.581 | 267 | 141 | 9 | 77 | 340 | 36 | 274 | 5.74e-37 | 134 |
| MS.gene77734.t1 | AT3G02970 | 25.249 | 301 | 183 | 10 | 77 | 343 | 39 | 331 | 4.73e-20 | 90.1 |
Find 98 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTATACGGGACAGGTTT+TGG | 0.231495 | 4.4:-68709405 | MS.gene77734:CDS |
| ATACAATTTGGTACGGTAAT+TGG | 0.234330 | 4.4:-68710075 | MS.gene77734:CDS |
| TCATAACCGTTCATACAATT+TGG | 0.244821 | 4.4:-68710087 | MS.gene77734:CDS |
| GATTTGTGTGAGGGTATTTA+TGG | 0.248402 | 4.4:-68709443 | MS.gene77734:CDS |
| AGATGAACCTTCGTATTTCT+TGG | 0.248923 | 4.4:+68710156 | None:intergenic |
| AAACCACTTCTAGGGTTTAT+AGG | 0.259480 | 4.4:+68709800 | None:intergenic |
| AAGAGATATAAACCACTTCT+AGG | 0.279278 | 4.4:+68709791 | None:intergenic |
| TTTACATTTCCTTCACTTGT+TGG | 0.297918 | 4.4:-68709707 | MS.gene77734:CDS |
| ACACCTCATCCTTCAGTTTC+CGG | 0.298564 | 4.4:-68709995 | MS.gene77734:CDS |
| TCATTATTAGGTGATTTAAA+AGG | 0.321946 | 4.4:+68709584 | None:intergenic |
| TCAACTCCAACATCATTATT+AGG | 0.325164 | 4.4:+68709572 | None:intergenic |
| GGGAGAGGAGGAGGATGGTG+AGG | 0.326709 | 4.4:+68710263 | None:intergenic |
| GATTTAAAAGGTTTCACATT+AGG | 0.332223 | 4.4:+68709596 | None:intergenic |
| GGTATTTATGGAACTGGTGG+GGG | 0.340078 | 4.4:-68709431 | MS.gene77734:CDS |
| ATTGAATAGATAAACGAGTT+AGG | 0.346295 | 4.4:+68709864 | None:intergenic |
| TTGGCTAATGCTTGGTATGC+TGG | 0.365288 | 4.4:-68709497 | MS.gene77734:CDS |
| GTTATGATGTTTGTTAAAAC+AGG | 0.366999 | 4.4:+68710103 | None:intergenic |
| CTTCTAGGGTTTATAGGTAA+TGG | 0.370465 | 4.4:+68709806 | None:intergenic |
| TATCAATGATCAAGAGCATT+AGG | 0.373851 | 4.4:+68709287 | None:intergenic |
| ATCCTTCAGTTTCCGGTTGG+TGG | 0.375376 | 4.4:-68709988 | MS.gene77734:CDS |
| AGAGGAGGAGGATGGTGAGG+GGG | 0.378705 | 4.4:+68710266 | None:intergenic |
| CAAGGACGGTAGCAGGTTAC+TGG | 0.379884 | 4.4:+68710226 | None:intergenic |
| GAGAGGAGGAGGATGGTGAG+GGG | 0.384614 | 4.4:+68710265 | None:intergenic |
| GCTATTTCCACTGGAAAACT+TGG | 0.396875 | 4.4:+68709467 | None:intergenic |
| GTTACACCTTACCTTATGCT+TGG | 0.398067 | 4.4:-68709685 | MS.gene77734:CDS |
| CGGTGGTGGTTGGGTGGGTG+AGG | 0.402699 | 4.4:+68710303 | None:intergenic |
| AATAATGATGTTGGAGTTGA+TGG | 0.404139 | 4.4:-68709569 | MS.gene77734:CDS |
| ATAATATGAATGGGATTAGA+AGG | 0.405760 | 4.4:-68709361 | MS.gene77734:CDS |
| CACCGTGTACGGTGGTGGTT+GGG | 0.408251 | 4.4:+68710294 | None:intergenic |
| TTACACCTTACCTTATGCTT+GGG | 0.413996 | 4.4:-68709684 | MS.gene77734:CDS |
| TTGAATAGATAAACGAGTTA+GGG | 0.419432 | 4.4:+68709865 | None:intergenic |
| TGTGAGGGTATTTATGGAAC+TGG | 0.428097 | 4.4:-68709437 | MS.gene77734:CDS |
| CATCTGAGTTTGTAAAACTA+AGG | 0.432749 | 4.4:-68710138 | MS.gene77734:CDS |
| GGAGAGGAGGAGGATGGTGA+GGG | 0.442214 | 4.4:+68710264 | None:intergenic |
| ATGCTTTACACTGATCAAAC+CGG | 0.447179 | 4.4:-68709956 | MS.gene77734:CDS |
| ACCTTACCTTATGCTTGGGT+TGG | 0.460545 | 4.4:-68709680 | MS.gene77734:CDS |
| AAATCACCTAATAATGATGT+TGG | 0.461585 | 4.4:-68709578 | MS.gene77734:CDS |
| GTATTTCTTGGAAGCTCCGA+AGG | 0.466484 | 4.4:+68710168 | None:intergenic |
| AGGGTATTTATGGAACTGGT+GGG | 0.467908 | 4.4:-68709433 | MS.gene77734:CDS |
| CGTGTACGGTGGTGGTTGGG+TGG | 0.475798 | 4.4:+68710297 | None:intergenic |
| TGAGCTGGCAAGTAACCCTT+TGG | 0.476541 | 4.4:-68709516 | MS.gene77734:CDS |
| CCGTGAGAAGGGAGAGGAGG+AGG | 0.476928 | 4.4:+68710254 | None:intergenic |
| CAGTAACCTGCTACCGTCCT+TGG | 0.478495 | 4.4:-68710225 | MS.gene77734:CDS |
| TTGTGGCCAAGGACGGTAGC+AGG | 0.487003 | 4.4:+68710219 | None:intergenic |
| AACATAACAGATTACGCCTT+CGG | 0.493579 | 4.4:-68710184 | MS.gene77734:CDS |
| AGAGCCACCGTGTACGGTGG+TGG | 0.496136 | 4.4:+68710289 | None:intergenic |
| GATGGTATGATAAGTGTGAT+AGG | 0.498355 | 4.4:-68709551 | MS.gene77734:CDS |
| GTGTACGGTGGTGGTTGGGT+GGG | 0.499310 | 4.4:+68710298 | None:intergenic |
| AGGACATGAACTTGCTGAGC+TGG | 0.501455 | 4.4:-68709531 | MS.gene77734:CDS |
| CTCATCCTTCAGTTTCCGGT+TGG | 0.502732 | 4.4:-68709991 | MS.gene77734:CDS |
| CGTGTTTGAGATATTAGACC+CGG | 0.510220 | 4.4:+68709937 | None:intergenic |
| CCACCGTGTACGGTGGTGGT+TGG | 0.513355 | 4.4:+68710293 | None:intergenic |
| GTGCCACGTATAATATGAAT+GGG | 0.514329 | 4.4:-68709370 | MS.gene77734:CDS |
| GTAACCCTTTGGCTAATGCT+TGG | 0.515118 | 4.4:-68709505 | MS.gene77734:CDS |
| CTATTACCAACCCAAGCATA+AGG | 0.521989 | 4.4:+68709674 | None:intergenic |
| CACAAATCAGCTATTTCCAC+TGG | 0.522774 | 4.4:+68709458 | None:intergenic |
| TTGATCAGTGTAAAGCATAA+CGG | 0.523242 | 4.4:+68709961 | None:intergenic |
| TACTGGATCCACCGTGAGAA+GGG | 0.530634 | 4.4:+68710243 | None:intergenic |
| ATCTCAAACACGGTTCATCT+AGG | 0.532471 | 4.4:-68709926 | MS.gene77734:CDS |
| GGTGCCACGTATAATATGAA+TGG | 0.532803 | 4.4:-68709371 | MS.gene77734:CDS |
| GAGGGTATTTATGGAACTGG+TGG | 0.535445 | 4.4:-68709434 | MS.gene77734:CDS |
| ACCGTTCATACAATTTGGTA+CGG | 0.540027 | 4.4:-68710082 | MS.gene77734:CDS |
| GGGTGGATCTTATACGGGAC+AGG | 0.540517 | 4.4:-68709411 | MS.gene77734:CDS |
| CCTCCTCCTCTCCCTTCTCA+CGG | 0.541596 | 4.4:-68710254 | MS.gene77734:CDS |
| CATACCAAGCATTAGCCAAA+GGG | 0.541904 | 4.4:+68709501 | None:intergenic |
| ACCGTACCAAATTGTATGAA+CGG | 0.544036 | 4.4:+68710081 | None:intergenic |
| AGAGATATAAACCACTTCTA+GGG | 0.547947 | 4.4:+68709792 | None:intergenic |
| CATAAACTGTGGAACAGCGT+AGG | 0.563772 | 4.4:+68709619 | None:intergenic |
| ATAAACTGTGGAACAGCGTA+GGG | 0.565866 | 4.4:+68709620 | None:intergenic |
| GCTAATGCTTGGTATGCTGG+TGG | 0.566404 | 4.4:-68709494 | MS.gene77734:CDS |
| GGGAGAGCCACCGTGTACGG+TGG | 0.569795 | 4.4:+68710286 | None:intergenic |
| CACCCAACCACCACCGTACA+CGG | 0.570985 | 4.4:-68710296 | MS.gene77734:CDS |
| GCATACCAAGCATTAGCCAA+AGG | 0.572741 | 4.4:+68709500 | None:intergenic |
| TTACTGGATCCACCGTGAGA+AGG | 0.583134 | 4.4:+68710242 | None:intergenic |
| GAGAAGGGAGAGGAGGAGGA+TGG | 0.583210 | 4.4:+68710258 | None:intergenic |
| ACCAACCCAAGCATAAGGTA+AGG | 0.583852 | 4.4:+68709679 | None:intergenic |
| TTACCTATAAACCCTAGAAG+TGG | 0.584847 | 4.4:-68709803 | MS.gene77734:CDS |
| TTCCACCAACCGGAAACTGA+AGG | 0.593014 | 4.4:+68709986 | None:intergenic |
| GGGTATTTATGGAACTGGTG+GGG | 0.593523 | 4.4:-68709432 | MS.gene77734:CDS |
| AATAGTGAGAAATTCTGTGC+GGG | 0.595168 | 4.4:-68709656 | MS.gene77734:CDS |
| TGCTTTACACTGATCAAACC+GGG | 0.595325 | 4.4:-68709955 | MS.gene77734:CDS |
| CCACCGTGAGAAGGGAGAGG+AGG | 0.595580 | 4.4:+68710251 | None:intergenic |
| GATTTCTGCACGTCAGCATG+TGG | 0.608608 | 4.4:-68709740 | MS.gene77734:CDS |
| AAGGTGTAACCAACAAGTGA+AGG | 0.610334 | 4.4:+68709698 | None:intergenic |
| CAACCGGAAACTGAAGGATG+AGG | 0.620599 | 4.4:+68709992 | None:intergenic |
| GATCCACCGTGAGAAGGGAG+AGG | 0.624149 | 4.4:+68710248 | None:intergenic |
| CCTCCTCTCCCTTCTCACGG+TGG | 0.632726 | 4.4:-68710251 | MS.gene77734:CDS |
| TGTAAAACTAAGGTACCACA+TGG | 0.633747 | 4.4:-68710128 | MS.gene77734:CDS |
| CGGGTCTAATATCTCAAACA+CGG | 0.644523 | 4.4:-68709936 | MS.gene77734:CDS |
| GAAATAGCTGATTTGTGTGA+GGG | 0.648764 | 4.4:-68709452 | MS.gene77734:CDS |
| GGAGCTTCCAAGAAATACGA+AGG | 0.653895 | 4.4:-68710163 | MS.gene77734:CDS |
| TTCACATTAGGCATAAACTG+TGG | 0.683349 | 4.4:+68709608 | None:intergenic |
| TTGTTAAAACAGGTCCCATG+TGG | 0.691037 | 4.4:+68710113 | None:intergenic |
| GGAAATAGCTGATTTGTGTG+AGG | 0.694894 | 4.4:-68709453 | MS.gene77734:CDS |
| AATCCCATTCATATTATACG+TGG | 0.705015 | 4.4:+68709367 | None:intergenic |
| CCAACCACCACCGTACACGG+TGG | 0.728658 | 4.4:-68710293 | MS.gene77734:CDS |
| TAATAGTGAGAAATTCTGTG+CGG | 0.740718 | 4.4:-68709657 | MS.gene77734:CDS |
| GTAAAACTAAGGTACCACAT+GGG | 0.766148 | 4.4:-68710127 | MS.gene77734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATTAGGTGATTTAAA+AGG | + | chr4.4:68710021-68710040 | None:intergenic | 20.0% |
| !!! | AATCTGTTATGTTTTTTGTA+GGG | + | chr4.4:68709411-68709430 | None:intergenic | 20.0% |
| !!! | TAATCTGTTATGTTTTTTGT+AGG | + | chr4.4:68709412-68709431 | None:intergenic | 20.0% |
| !!! | TCTAATAGCACTTTTAATAA+CGG | + | chr4.4:68709764-68709783 | None:intergenic | 20.0% |
| ! | AAATCACCTAATAATGATGT+TGG | - | chr4.4:68710024-68710043 | MS.gene77734:CDS | 25.0% |
| ! | ATAATATGAATGGGATTAGA+AGG | - | chr4.4:68710241-68710260 | MS.gene77734:CDS | 25.0% |
| ! | ATTGAATAGATAAACGAGTT+AGG | + | chr4.4:68709741-68709760 | None:intergenic | 25.0% |
| ! | GATTTAAAAGGTTTCACATT+AGG | + | chr4.4:68710009-68710028 | None:intergenic | 25.0% |
| ! | TTGAATAGATAAACGAGTTA+GGG | + | chr4.4:68709740-68709759 | None:intergenic | 25.0% |
| !! | ACTCACGTATAATTTTCTTT+TGG | + | chr4.4:68709561-68709580 | None:intergenic | 25.0% |
| !! | GTTATGATGTTTGTTAAAAC+AGG | + | chr4.4:68709502-68709521 | None:intergenic | 25.0% |
| !! | TTTTACCATGTGAATAAAAC+CGG | + | chr4.4:68709717-68709736 | None:intergenic | 25.0% |
| !!! | CATGTTTTGAATTATTGTAC+TGG | - | chr4.4:68710291-68710310 | MS.gene77734:CDS | 25.0% |
| AAGAGATATAAACCACTTCT+AGG | + | chr4.4:68709814-68709833 | None:intergenic | 30.0% | |
| AATAATGATGTTGGAGTTGA+TGG | - | chr4.4:68710033-68710052 | MS.gene77734:CDS | 30.0% | |
| AATCCCATTCATATTATACG+TGG | + | chr4.4:68710238-68710257 | None:intergenic | 30.0% | |
| AGAGATATAAACCACTTCTA+GGG | + | chr4.4:68709813-68709832 | None:intergenic | 30.0% | |
| ATACAATTTGGTACGGTAAT+TGG | - | chr4.4:68709527-68709546 | MS.gene77734:CDS | 30.0% | |
| CATCTGAGTTTGTAAAACTA+AGG | - | chr4.4:68709464-68709483 | MS.gene77734:CDS | 30.0% | |
| TAATAGTGAGAAATTCTGTG+CGG | - | chr4.4:68709945-68709964 | MS.gene77734:CDS | 30.0% | |
| TCAACTCCAACATCATTATT+AGG | + | chr4.4:68710033-68710052 | None:intergenic | 30.0% | |
| TCATAACCGTTCATACAATT+TGG | - | chr4.4:68709515-68709534 | MS.gene77734:CDS | 30.0% | |
| TTGATCAGTGTAAAGCATAA+CGG | + | chr4.4:68709644-68709663 | None:intergenic | 30.0% | |
| TTTACATTTCCTTCACTTGT+TGG | - | chr4.4:68709895-68709914 | MS.gene77734:CDS | 30.0% | |
| !!! | ATGTTTTTTGTAGGGTTTTG+TGG | + | chr4.4:68709403-68709422 | None:intergenic | 30.0% |
| AACATAACAGATTACGCCTT+CGG | - | chr4.4:68709418-68709437 | MS.gene77734:CDS | 35.0% | |
| AATAGTGAGAAATTCTGTGC+GGG | - | chr4.4:68709946-68709965 | MS.gene77734:CDS | 35.0% | |
| ACCGTACCAAATTGTATGAA+CGG | + | chr4.4:68709524-68709543 | None:intergenic | 35.0% | |
| ACCGTTCATACAATTTGGTA+CGG | - | chr4.4:68709520-68709539 | MS.gene77734:CDS | 35.0% | |
| AGATGAACCTTCGTATTTCT+TGG | + | chr4.4:68709449-68709468 | None:intergenic | 35.0% | |
| ATGCTTTACACTGATCAAAC+CGG | - | chr4.4:68709646-68709665 | MS.gene77734:CDS | 35.0% | |
| GATGGTATGATAAGTGTGAT+AGG | - | chr4.4:68710051-68710070 | MS.gene77734:CDS | 35.0% | |
| GTGCCACGTATAATATGAAT+GGG | - | chr4.4:68710232-68710251 | MS.gene77734:CDS | 35.0% | |
| TAGGTCAAGAAAAAAACGAC+CGG | - | chr4.4:68709695-68709714 | MS.gene77734:CDS | 35.0% | |
| TTACACCTTACCTTATGCTT+GGG | - | chr4.4:68709918-68709937 | MS.gene77734:CDS | 35.0% | |
| TTACCTATAAACCCTAGAAG+TGG | - | chr4.4:68709799-68709818 | MS.gene77734:CDS | 35.0% | |
| TTCACATTAGGCATAAACTG+TGG | + | chr4.4:68709997-68710016 | None:intergenic | 35.0% | |
| ! | GTAAAACTAAGGTACCACAT+GGG | - | chr4.4:68709475-68709494 | MS.gene77734:CDS | 35.0% |
| ! | TGGGATTAGAAGGAAGTTTT+TGG | - | chr4.4:68710251-68710270 | MS.gene77734:CDS | 35.0% |
| ! | TGTAAAACTAAGGTACCACA+TGG | - | chr4.4:68709474-68709493 | MS.gene77734:CDS | 35.0% |
| !! | AAACCACTTCTAGGGTTTAT+AGG | + | chr4.4:68709805-68709824 | None:intergenic | 35.0% |
| !! | CTTCTAGGGTTTATAGGTAA+TGG | + | chr4.4:68709799-68709818 | None:intergenic | 35.0% |
| !! | GAAATAGCTGATTTGTGTGA+GGG | - | chr4.4:68710150-68710169 | MS.gene77734:CDS | 35.0% |
| !! | GATTTGTGTGAGGGTATTTA+TGG | - | chr4.4:68710159-68710178 | MS.gene77734:CDS | 35.0% |
| AAGGTGTAACCAACAAGTGA+AGG | + | chr4.4:68709907-68709926 | None:intergenic | 40.0% | |
| ATAAACTGTGGAACAGCGTA+GGG | + | chr4.4:68709985-68710004 | None:intergenic | 40.0% | |
| ATCTCAAACACGGTTCATCT+AGG | - | chr4.4:68709676-68709695 | MS.gene77734:CDS | 40.0% | |
| CATACCAAGCATTAGCCAAA+GGG | + | chr4.4:68710104-68710123 | None:intergenic | 40.0% | |
| CGGGTCTAATATCTCAAACA+CGG | - | chr4.4:68709666-68709685 | MS.gene77734:CDS | 40.0% | |
| CTATTACCAACCCAAGCATA+AGG | + | chr4.4:68709931-68709950 | None:intergenic | 40.0% | |
| GTTACACCTTACCTTATGCT+TGG | - | chr4.4:68709917-68709936 | MS.gene77734:CDS | 40.0% | |
| TGCTTTACACTGATCAAACC+GGG | - | chr4.4:68709647-68709666 | MS.gene77734:CDS | 40.0% | |
| TTGTTAAAACAGGTCCCATG+TGG | + | chr4.4:68709492-68709511 | None:intergenic | 40.0% | |
| ! | AGGGTATTTATGGAACTGGT+GGG | - | chr4.4:68710169-68710188 | MS.gene77734:CDS | 40.0% |
| ! | ATCTTATACGGGACAGGTTT+TGG | - | chr4.4:68710197-68710216 | MS.gene77734:CDS | 40.0% |
| ! | CACAAATCAGCTATTTCCAC+TGG | + | chr4.4:68710147-68710166 | None:intergenic | 40.0% |
| ! | CGTGTTTGAGATATTAGACC+CGG | + | chr4.4:68709668-68709687 | None:intergenic | 40.0% |
| ! | GCTATTTCCACTGGAAAACT+TGG | + | chr4.4:68710138-68710157 | None:intergenic | 40.0% |
| ! | GGTGCCACGTATAATATGAA+TGG | - | chr4.4:68710231-68710250 | MS.gene77734:CDS | 40.0% |
| ! | TGAAGGATGAGGTGTGTTTT+TGG | + | chr4.4:68709602-68709621 | None:intergenic | 40.0% |
| !! | GGAAATAGCTGATTTGTGTG+AGG | - | chr4.4:68710149-68710168 | MS.gene77734:CDS | 40.0% |
| !! | TGTGAGGGTATTTATGGAAC+TGG | - | chr4.4:68710165-68710184 | MS.gene77734:CDS | 40.0% |
| !!! | AACGACCGGTTTTATTCACA+TGG | - | chr4.4:68709709-68709728 | MS.gene77734:CDS | 40.0% |
| !!! | AGTTTTTGGTTCAGTGGCTT+TGG | - | chr4.4:68710265-68710284 | MS.gene77734:CDS | 40.0% |
| !!! | CAGGTTTTGGATGATCATGA+TGG | - | chr4.4:68710210-68710229 | MS.gene77734:CDS | 40.0% |
| !!! | GAAGGAAGTTTTTGGTTCAG+TGG | - | chr4.4:68710259-68710278 | MS.gene77734:CDS | 40.0% |
| ACACCTCATCCTTCAGTTTC+CGG | - | chr4.4:68709607-68709626 | MS.gene77734:CDS | 45.0% | |
| ACCAACCCAAGCATAAGGTA+AGG | + | chr4.4:68709926-68709945 | None:intergenic | 45.0% | |
| ACCTTACCTTATGCTTGGGT+TGG | - | chr4.4:68709922-68709941 | MS.gene77734:CDS | 45.0% | |
| CATAAACTGTGGAACAGCGT+AGG | + | chr4.4:68709986-68710005 | None:intergenic | 45.0% | |
| GCATACCAAGCATTAGCCAA+AGG | + | chr4.4:68710105-68710124 | None:intergenic | 45.0% | |
| GGAGCTTCCAAGAAATACGA+AGG | - | chr4.4:68709439-68709458 | MS.gene77734:CDS | 45.0% | |
| GGGTATTTATGGAACTGGTG+GGG | - | chr4.4:68710170-68710189 | MS.gene77734:CDS | 45.0% | |
| GGTATTTATGGAACTGGTGG+GGG | - | chr4.4:68710171-68710190 | MS.gene77734:CDS | 45.0% | |
| GTAACCCTTTGGCTAATGCT+TGG | - | chr4.4:68710097-68710116 | MS.gene77734:CDS | 45.0% | |
| GTATTTCTTGGAAGCTCCGA+AGG | + | chr4.4:68709437-68709456 | None:intergenic | 45.0% | |
| TTGGCTAATGCTTGGTATGC+TGG | - | chr4.4:68710105-68710124 | MS.gene77734:CDS | 45.0% | |
| ! | CATAACGGTTTTCCACCAAC+CGG | + | chr4.4:68709629-68709648 | None:intergenic | 45.0% |
| ! | TGGAGATCCAAGTTTTCCAG+TGG | - | chr4.4:68710128-68710147 | MS.gene77734:CDS | 45.0% |
| !! | GAGGGTATTTATGGAACTGG+TGG | - | chr4.4:68710168-68710187 | MS.gene77734:CDS | 45.0% |
| !! | TTTGTAGGGTTTTGTGGCCA+AGG | + | chr4.4:68709397-68709416 | None:intergenic | 45.0% |
| ATCCTTCAGTTTCCGGTTGG+TGG | - | chr4.4:68709614-68709633 | MS.gene77734:CDS | 50.0% | |
| ATTTATGGAACTGGTGGGGG+TGG | - | chr4.4:68710174-68710193 | MS.gene77734:CDS | 50.0% | |
| CAACCGGAAACTGAAGGATG+AGG | + | chr4.4:68709613-68709632 | None:intergenic | 50.0% | |
| CTCATCCTTCAGTTTCCGGT+TGG | - | chr4.4:68709611-68709630 | MS.gene77734:CDS | 50.0% | |
| GATTTCTGCACGTCAGCATG+TGG | - | chr4.4:68709862-68709881 | MS.gene77734:CDS | 50.0% | |
| GCTAATGCTTGGTATGCTGG+TGG | - | chr4.4:68710108-68710127 | MS.gene77734:CDS | 50.0% | |
| TACTGGATCCACCGTGAGAA+GGG | + | chr4.4:68709362-68709381 | None:intergenic | 50.0% | |
| TGAGCTGGCAAGTAACCCTT+TGG | - | chr4.4:68710086-68710105 | MS.gene77734:CDS | 50.0% | |
| TGGTGGGGGTGGATCTTATA+CGG | - | chr4.4:68710185-68710204 | MS.gene77734:CDS | 50.0% | |
| TTACTGGATCCACCGTGAGA+AGG | + | chr4.4:68709363-68709382 | None:intergenic | 50.0% | |
| TTCCACCAACCGGAAACTGA+AGG | + | chr4.4:68709619-68709638 | None:intergenic | 50.0% | |
| !! | AGGACATGAACTTGCTGAGC+TGG | - | chr4.4:68710071-68710090 | MS.gene77734:CDS | 50.0% |
| !! | TAGGGTTTTGTGGCCAAGGA+CGG | + | chr4.4:68709393-68709412 | None:intergenic | 50.0% |
| CAAGGACGGTAGCAGGTTAC+TGG | + | chr4.4:68709379-68709398 | None:intergenic | 55.0% | |
| CAGTAACCTGCTACCGTCCT+TGG | - | chr4.4:68709377-68709396 | MS.gene77734:CDS | 55.0% | |
| GGGTGGATCTTATACGGGAC+AGG | - | chr4.4:68710191-68710210 | MS.gene77734:CDS | 55.0% | |
| GGTGGGGGTGGATCTTATAC+GGG | - | chr4.4:68710186-68710205 | MS.gene77734:CDS | 55.0% | |
| AGAGGAGGAGGATGGTGAGG+GGG | + | chr4.4:68709339-68709358 | None:intergenic | 60.0% | |
| CACCCAACCACCACCGTACA+CGG | - | chr4.4:68709306-68709325 | MS.gene77734:CDS | 60.0% | |
| CCTCCTCCTCTCCCTTCTCA+CGG | - | chr4.4:68709348-68709367 | MS.gene77734:CDS | 60.0% | |
| GAGAAGGGAGAGGAGGAGGA+TGG | + | chr4.4:68709347-68709366 | None:intergenic | 60.0% | |
| GAGAGGAGGAGGATGGTGAG+GGG | + | chr4.4:68709340-68709359 | None:intergenic | 60.0% | |
| GATCCACCGTGAGAAGGGAG+AGG | + | chr4.4:68709357-68709376 | None:intergenic | 60.0% | |
| GGAGAGGAGGAGGATGGTGA+GGG | + | chr4.4:68709341-68709360 | None:intergenic | 60.0% | |
| TTGTGGCCAAGGACGGTAGC+AGG | + | chr4.4:68709386-68709405 | None:intergenic | 60.0% | |
| ! | CACCGTGTACGGTGGTGGTT+GGG | + | chr4.4:68709311-68709330 | None:intergenic | 60.0% |
| ! | GTGTACGGTGGTGGTTGGGT+GGG | + | chr4.4:68709307-68709326 | None:intergenic | 60.0% |
| AGAGCCACCGTGTACGGTGG+TGG | + | chr4.4:68709316-68709335 | None:intergenic | 65.0% | |
| AGGGGGAGAGCCACCGTGTA+CGG | + | chr4.4:68709322-68709341 | None:intergenic | 65.0% | |
| CCAACCACCACCGTACACGG+TGG | - | chr4.4:68709309-68709328 | MS.gene77734:CDS | 65.0% | |
| CCACCGTGAGAAGGGAGAGG+AGG | + | chr4.4:68709354-68709373 | None:intergenic | 65.0% | |
| CCGTGAGAAGGGAGAGGAGG+AGG | + | chr4.4:68709351-68709370 | None:intergenic | 65.0% | |
| CCTCCTCTCCCTTCTCACGG+TGG | - | chr4.4:68709351-68709370 | MS.gene77734:CDS | 65.0% | |
| GGGAGAGGAGGAGGATGGTG+AGG | + | chr4.4:68709342-68709361 | None:intergenic | 65.0% | |
| ! | CCACCGTGTACGGTGGTGGT+TGG | + | chr4.4:68709312-68709331 | None:intergenic | 65.0% |
| ! | CGTGTACGGTGGTGGTTGGG+TGG | + | chr4.4:68709308-68709327 | None:intergenic | 65.0% |
| GGGAGAGCCACCGTGTACGG+TGG | + | chr4.4:68709319-68709338 | None:intergenic | 70.0% | |
| ! | CGGTGGTGGTTGGGTGGGTG+AGG | + | chr4.4:68709302-68709321 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 68709289 | 68710335 | 68709289 | ID=MS.gene77734 |
| chr4.4 | mRNA | 68709289 | 68710335 | 68709289 | ID=MS.gene77734.t1;Parent=MS.gene77734 |
| chr4.4 | exon | 68709289 | 68710335 | 68709289 | ID=MS.gene77734.t1.exon1;Parent=MS.gene77734.t1 |
| chr4.4 | CDS | 68709289 | 68710335 | 68709289 | ID=cds.MS.gene77734.t1;Parent=MS.gene77734.t1 |
| Gene Sequence |
| Protein sequence |
