Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051262.t1 | XP_003613438.2 | 96.8 | 95 | 3 | 0 | 8 | 102 | 77 | 171 | 8.20E-45 | 190.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051262.t1 | O48686 | 73.7 | 95 | 25 | 0 | 8 | 102 | 48 | 142 | 4.7e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051262.t1 | G7K6W4 | 96.8 | 95 | 3 | 0 | 8 | 102 | 77 | 171 | 5.9e-45 | 190.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene051262.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051262 | MS.gene76365 | 0.948015 | 2.18E-106 | -1.69E-46 |
| MS.gene051262 | MS.gene76368 | 0.855145 | 7.68E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051262.t1 | MTR_5g036670 | 93.878 | 98 | 6 | 0 | 5 | 102 | 74 | 171 | 2.54e-56 | 191 |
| MS.gene051262.t1 | MTR_8g062700 | 69.388 | 98 | 30 | 0 | 5 | 102 | 73 | 170 | 3.13e-39 | 142 |
| MS.gene051262.t1 | MTR_8g062700 | 69.388 | 98 | 30 | 0 | 5 | 102 | 73 | 170 | 3.16e-39 | 142 |
| MS.gene051262.t1 | MTR_6g008970 | 66.327 | 98 | 33 | 0 | 5 | 102 | 94 | 191 | 2.41e-36 | 134 |
| MS.gene051262.t1 | MTR_6g008995 | 64.286 | 98 | 33 | 2 | 5 | 102 | 11 | 106 | 1.34e-32 | 120 |
| MS.gene051262.t1 | MTR_6g008995 | 64.286 | 98 | 33 | 2 | 5 | 102 | 68 | 163 | 2.39e-32 | 120 |
| MS.gene051262.t1 | MTR_1g023820 | 94.737 | 38 | 2 | 0 | 6 | 43 | 19 | 56 | 2.74e-19 | 79.7 |
| MS.gene051262.t1 | MTR_7g013410 | 43.333 | 90 | 40 | 3 | 8 | 94 | 32 | 113 | 5.06e-16 | 71.6 |
| MS.gene051262.t1 | MTR_1g105955 | 40.909 | 88 | 45 | 2 | 5 | 92 | 47 | 127 | 4.43e-13 | 64.7 |
| MS.gene051262.t1 | MTR_8g062350 | 31.429 | 140 | 53 | 3 | 13 | 113 | 53 | 188 | 2.06e-12 | 63.2 |
| MS.gene051262.t1 | MTR_4g133470 | 36.082 | 97 | 56 | 1 | 8 | 104 | 43 | 133 | 4.91e-12 | 63.2 |
| MS.gene051262.t1 | MTR_1g105960 | 56.818 | 44 | 19 | 0 | 8 | 51 | 35 | 78 | 5.57e-12 | 60.1 |
| MS.gene051262.t1 | MTR_4g133300 | 36.082 | 97 | 56 | 1 | 8 | 104 | 43 | 133 | 7.11e-12 | 62.4 |
| MS.gene051262.t1 | MTR_0091s0080 | 37.333 | 75 | 43 | 2 | 111 | 185 | 403 | 473 | 9.40e-12 | 63.2 |
| MS.gene051262.t1 | MTR_1g104960 | 31.343 | 134 | 81 | 4 | 8 | 137 | 47 | 173 | 1.50e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051262.t1 | AT1G70060 | 75.000 | 96 | 23 | 1 | 8 | 102 | 48 | 143 | 2.85e-40 | 145 |
| MS.gene051262.t1 | AT1G70060 | 75.000 | 96 | 23 | 1 | 8 | 102 | 48 | 143 | 2.85e-40 | 145 |
| MS.gene051262.t1 | AT1G24190 | 73.684 | 95 | 25 | 0 | 8 | 102 | 48 | 142 | 4.75e-39 | 142 |
| MS.gene051262.t1 | AT1G24190 | 73.684 | 95 | 25 | 0 | 8 | 102 | 48 | 142 | 4.89e-39 | 142 |
| MS.gene051262.t1 | AT1G24190 | 73.684 | 95 | 25 | 0 | 8 | 102 | 48 | 142 | 4.99e-39 | 142 |
| MS.gene051262.t1 | AT5G15020 | 64.583 | 96 | 32 | 1 | 7 | 102 | 85 | 178 | 1.21e-32 | 123 |
| MS.gene051262.t1 | AT5G15020 | 64.583 | 96 | 32 | 1 | 7 | 102 | 85 | 178 | 1.21e-32 | 123 |
| MS.gene051262.t1 | AT3G01320 | 63.265 | 98 | 35 | 1 | 5 | 102 | 88 | 184 | 3.78e-32 | 122 |
| MS.gene051262.t1 | AT3G01320 | 63.265 | 98 | 35 | 1 | 5 | 102 | 88 | 184 | 3.85e-32 | 122 |
| MS.gene051262.t1 | AT1G59890 | 61.224 | 98 | 36 | 1 | 5 | 102 | 76 | 171 | 8.20e-32 | 121 |
| MS.gene051262.t1 | AT1G59890 | 61.224 | 98 | 36 | 1 | 5 | 102 | 76 | 171 | 8.52e-32 | 121 |
| MS.gene051262.t1 | AT1G59890 | 61.224 | 98 | 36 | 1 | 5 | 102 | 76 | 171 | 8.61e-32 | 121 |
| MS.gene051262.t1 | AT1G59890 | 61.224 | 98 | 36 | 1 | 5 | 102 | 76 | 171 | 9.38e-32 | 120 |
| MS.gene051262.t1 | AT1G10450 | 61.053 | 95 | 35 | 1 | 8 | 102 | 118 | 210 | 2.85e-31 | 119 |
| MS.gene051262.t1 | AT1G10450 | 61.053 | 95 | 35 | 1 | 8 | 102 | 67 | 159 | 2.92e-31 | 119 |
| MS.gene051262.t1 | AT1G10450 | 61.053 | 95 | 35 | 1 | 8 | 102 | 67 | 159 | 2.92e-31 | 119 |
| MS.gene051262.t1 | AT1G24200 | 58.947 | 95 | 36 | 1 | 8 | 102 | 48 | 139 | 2.10e-30 | 110 |
| MS.gene051262.t1 | AT1G70030 | 48.980 | 98 | 48 | 2 | 5 | 102 | 42 | 137 | 4.65e-23 | 90.5 |
| MS.gene051262.t1 | AT5G35610 | 38.136 | 118 | 57 | 4 | 5 | 111 | 41 | 153 | 1.57e-15 | 70.9 |
| MS.gene051262.t1 | AT1G24230 | 35.514 | 107 | 60 | 4 | 8 | 113 | 120 | 218 | 2.27e-13 | 66.6 |
| MS.gene051262.t1 | AT1G27280 | 34.862 | 109 | 66 | 2 | 8 | 115 | 115 | 219 | 4.08e-13 | 65.5 |
| MS.gene051262.t1 | AT1G70030 | 45.977 | 87 | 44 | 2 | 5 | 89 | 53 | 138 | 5.14e-13 | 63.5 |
| MS.gene051262.t1 | AT1G70030 | 52.308 | 65 | 30 | 1 | 5 | 69 | 53 | 116 | 9.70e-13 | 62.4 |
Find 47 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTTTACAAGTCATTTA+TGG | 0.140196 | 7.3:-51044894 | MS.gene051262:CDS |
| CTCATGGCCCTTTGGCAAAA+AGG | 0.248205 | 7.3:+51045126 | None:intergenic |
| TTCATCTGTGTCGTGTTGAT+TGG | 0.378078 | 7.3:-51044658 | MS.gene051262:CDS |
| TCTTTGTAGACCAGGGTGAT+AGG | 0.392252 | 7.3:+51044839 | None:intergenic |
| AAGTTAACCATTACTTTATG+AGG | 0.408474 | 7.3:-51044456 | MS.gene051262:CDS |
| TTGTATGAGTGCACTGCAAA+GGG | 0.421632 | 7.3:+51044527 | None:intergenic |
| TCGTGTTGATTGGCGGTGAC+TGG | 0.441416 | 7.3:-51044648 | MS.gene051262:CDS |
| TTGCTGGAAATGTGGACTTT+GGG | 0.443532 | 7.3:-51047369 | None:intergenic |
| GAGTTATGTGAACACGATAA+AGG | 0.446913 | 7.3:-51045038 | MS.gene051262:intron |
| AGGGTAATCTCATGGCCCTT+TGG | 0.451315 | 7.3:+51045118 | None:intergenic |
| ACTCGGCATCAGTGGGGAAG+GGG | 0.451431 | 7.3:-51044578 | MS.gene051262:CDS |
| ACTGCAAAGGGGTATGTCTC+AGG | 0.456330 | 7.3:+51044539 | None:intergenic |
| TGGTTGAGGTTGCTCATCCT+CGG | 0.459938 | 7.3:+51045090 | None:intergenic |
| CAGGTACTTTCCCTCTTGGT+AGG | 0.460534 | 7.3:+51044430 | None:intergenic |
| GGTCATAGAGACTTGATCTT+GGG | 0.467943 | 7.3:-51045157 | MS.gene051262:CDS |
| CACATACCTCTTTGTAGACC+AGG | 0.470385 | 7.3:+51044831 | None:intergenic |
| ACATCAGGTACTTTCCCTCT+TGG | 0.471918 | 7.3:+51044426 | None:intergenic |
| GTTGCTGGAAATGTGGACTT+TGG | 0.474949 | 7.3:-51047370 | None:intergenic |
| TTTATGCAGACTCGGTTTCA+GGG | 0.487740 | 7.3:-51044923 | MS.gene051262:intron |
| AAACTCGGCATCAGTGGGGA+AGG | 0.492373 | 7.3:-51044580 | MS.gene051262:CDS |
| CTATAAAACTCGGCATCAGT+GGG | 0.502922 | 7.3:-51044585 | MS.gene051262:CDS |
| AGGTACTTTCCCTCTTGGTA+GGG | 0.505190 | 7.3:+51044431 | None:intergenic |
| GCTATAAAACTCGGCATCAG+TGG | 0.506265 | 7.3:-51044586 | MS.gene051262:CDS |
| ATCTGTGTCGTGTTGATTGG+CGG | 0.509936 | 7.3:-51044655 | MS.gene051262:CDS |
| AGGTCATAGAGACTTGATCT+TGG | 0.513611 | 7.3:-51045158 | MS.gene051262:CDS |
| CTCGGCATCAGTGGGGAAGG+GGG | 0.515169 | 7.3:-51044577 | MS.gene051262:CDS |
| AACTCGGCATCAGTGGGGAA+GGG | 0.528339 | 7.3:-51044579 | MS.gene051262:CDS |
| TTGCTCATCCTCGGACGAAA+GGG | 0.539598 | 7.3:+51045099 | None:intergenic |
| CTTGTATGAGTGCACTGCAA+AGG | 0.547650 | 7.3:+51044526 | None:intergenic |
| GTTGCTCATCCTCGGACGAA+AGG | 0.549267 | 7.3:+51045098 | None:intergenic |
| TATATTCATCCTTCGAGCAA+TGG | 0.563072 | 7.3:-51044502 | MS.gene051262:CDS |
| GGAAATGTGGACTTTGGGTA+TGG | 0.563872 | 7.3:-51047364 | None:intergenic |
| CATATTGAATACGTACAGAA+AGG | 0.566699 | 7.3:-51044870 | MS.gene051262:CDS |
| CGGACGAAAGGGTAATCTCA+TGG | 0.581909 | 7.3:+51045110 | None:intergenic |
| TGAGATTACCCTTTCGTCCG+AGG | 0.584557 | 7.3:-51045107 | MS.gene051262:CDS |
| GTTGGTCATGCTATAAAACT+CGG | 0.605058 | 7.3:-51044595 | MS.gene051262:CDS |
| TCATTGACACCATTGCTCGA+AGG | 0.620805 | 7.3:+51044493 | None:intergenic |
| TAGGGCACCTCATAAAGTAA+TGG | 0.626853 | 7.3:+51044449 | None:intergenic |
| ATTTGTAGAGTTGATACTGA+TGG | 0.633224 | 7.3:-51045211 | MS.gene051262:intron |
| TATGAGGTGCCCTACCAAGA+GGG | 0.635144 | 7.3:-51044440 | MS.gene051262:CDS |
| GGAAAGTAAGCCTATCACCC+TGG | 0.646683 | 7.3:-51044849 | MS.gene051262:CDS |
| TTATGAGGTGCCCTACCAAG+AGG | 0.660657 | 7.3:-51044441 | MS.gene051262:CDS |
| TATCACCCTGGTCTACAAAG+AGG | 0.680013 | 7.3:-51044837 | MS.gene051262:intron |
| ACATACCTCTTTGTAGACCA+GGG | 0.680303 | 7.3:+51044832 | None:intergenic |
| TGGTGTCATTGAAAGAGTGA+AGG | 0.685356 | 7.3:-51045191 | MS.gene051262:CDS |
| TGTATGAGTGCACTGCAAAG+GGG | 0.718580 | 7.3:+51044528 | None:intergenic |
| TATAAAACTCGGCATCAGTG+GGG | 0.747744 | 7.3:-51044584 | MS.gene051262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAATTAATATTAAAAAT+GGG | - | chr7.3:51046146-51046165 | MS.gene051262:intron | 10.0% |
| !! | TGGTTAATTAATATTAAAAA+TGG | - | chr7.3:51046145-51046164 | MS.gene051262:intron | 10.0% |
| !!! | CAATAAAAATTATATTTTGA+CGG | - | chr7.3:51045180-51045199 | MS.gene051262:CDS | 10.0% |
| !! | TAACATATAGAAAATATCAA+TGG | + | chr7.3:51045458-51045477 | None:intergenic | 15.0% |
| !! | TATCAAAGATATTATTATTG+TGG | - | chr7.3:51046084-51046103 | MS.gene051262:intron | 15.0% |
| !!! | ATTTTTCTGTTTTTTTTTCA+AGG | - | chr7.3:51045527-51045546 | MS.gene051262:intron | 15.0% |
| !!! | CGTCAAAATATAATTTTTAT+TGG | + | chr7.3:51045182-51045201 | None:intergenic | 15.0% |
| !!! | GTTGTTTTTGTATATATATT+GGG | - | chr7.3:51046503-51046522 | MS.gene051262:intron | 15.0% |
| !!! | TGTTCTTTACTTTTAATAAA+AGG | - | chr7.3:51044848-51044867 | MS.gene051262:CDS | 15.0% |
| !! | AAAAATACACCAAAAATTAG+AGG | + | chr7.3:51044655-51044674 | None:intergenic | 20.0% |
| !! | AAATTGGATACTTACAATAT+GGG | - | chr7.3:51045574-51045593 | MS.gene051262:intron | 20.0% |
| !! | AGAATGAAACTATTACAAAT+TGG | + | chr7.3:51044549-51044568 | None:intergenic | 20.0% |
| !! | AGTCTGAACTATAATATAAA+AGG | + | chr7.3:51045774-51045793 | None:intergenic | 20.0% |
| !! | ATATATATACAAAAACAACG+TGG | + | chr7.3:51046502-51046521 | None:intergenic | 20.0% |
| !! | GAATGAAACTATTACAAATT+GGG | + | chr7.3:51044548-51044567 | None:intergenic | 20.0% |
| !! | GTCTGAACTATAATATAAAA+GGG | + | chr7.3:51045773-51045792 | None:intergenic | 20.0% |
| !! | TCTGAACTATAATATAAAAG+GGG | + | chr7.3:51045772-51045791 | None:intergenic | 20.0% |
| !! | TCTGTTATTATATTCATCAT+GGG | - | chr7.3:51045704-51045723 | MS.gene051262:intron | 20.0% |
| !! | TGAATATAATAACAGAAGAA+AGG | + | chr7.3:51045700-51045719 | None:intergenic | 20.0% |
| !! | TTCTGTTATTATATTCATCA+TGG | - | chr7.3:51045703-51045722 | MS.gene051262:intron | 20.0% |
| !!! | AATTGATTTGTTTATCCTTT+TGG | - | chr7.3:51046552-51046571 | MS.gene051262:intron | 20.0% |
| !!! | CGTTGTTTTTGTATATATAT+TGG | - | chr7.3:51046502-51046521 | MS.gene051262:intron | 20.0% |
| !!! | GTTTTTTGATCAAATTATGT+GGG | - | chr7.3:51044701-51044720 | MS.gene051262:intron | 20.0% |
| !!! | TAAAATTCAACCTTCTTTTT+TGG | + | chr7.3:51046722-51046741 | None:intergenic | 20.0% |
| !!! | TATATGTTATTTTTGTAGCA+GGG | - | chr7.3:51045469-51045488 | MS.gene051262:intron | 20.0% |
| !!! | TGTTTTTTGATCAAATTATG+TGG | - | chr7.3:51044700-51044719 | MS.gene051262:intron | 20.0% |
| ! | AAGTTAACCATTACTTTATG+AGG | - | chr7.3:51047333-51047352 | MS.gene051262:intron | 25.0% |
| ! | AATAAAAGGTTGAAGAATCT+AGG | - | chr7.3:51044862-51044881 | MS.gene051262:CDS | 25.0% |
| ! | ATATTTCAGTTAAAGGAAGA+TGG | - | chr7.3:51046293-51046312 | MS.gene051262:intron | 25.0% |
| ! | CAAATTGGATACTTACAATA+TGG | - | chr7.3:51045573-51045592 | MS.gene051262:intron | 25.0% |
| ! | CCTTTAACTGAAATATGATA+CGG | + | chr7.3:51046289-51046308 | None:intergenic | 25.0% |
| ! | CTGAACTATAATATAAAAGG+GGG | + | chr7.3:51045771-51045790 | None:intergenic | 25.0% |
| ! | TAGAATGTTTGTGAGTTTAA+TGG | - | chr7.3:51046775-51046794 | MS.gene051262:intron | 25.0% |
| ! | TATAATAACAGAAGAAAGGA+AGG | + | chr7.3:51045696-51045715 | None:intergenic | 25.0% |
| ! | TATAGAATCACATGTTTGTA+AGG | - | chr7.3:51045882-51045901 | MS.gene051262:intron | 25.0% |
| ! | TCATGTTTACAAGTCATTTA+TGG | - | chr7.3:51046895-51046914 | MS.gene051262:intron | 25.0% |
| ! | TTTGTATATATATTGGGAGA+GGG | - | chr7.3:51046509-51046528 | MS.gene051262:intron | 25.0% |
| !! | ACTTCATTTTCAATCTTTTG+AGG | - | chr7.3:51046388-51046407 | MS.gene051262:intron | 25.0% |
| !! | TTTTGTATATATATTGGGAG+AGG | - | chr7.3:51046508-51046527 | MS.gene051262:intron | 25.0% |
| !!! | AGTTTTAGTTTTGAGCTTAA+TGG | - | chr7.3:51046837-51046856 | MS.gene051262:intron | 25.0% |
| !!! | ATATGTTATTTTTGTAGCAG+GGG | - | chr7.3:51045470-51045489 | MS.gene051262:intron | 25.0% |
| !!! | CTATATGTTATTTTTGTAGC+AGG | - | chr7.3:51045468-51045487 | MS.gene051262:intron | 25.0% |
| AATAATCTTGCAAAGCACAA+AGG | - | chr7.3:51046461-51046480 | MS.gene051262:intron | 30.0% | |
| AATAGGAGAAAGACAATTCA+TGG | + | chr7.3:51045655-51045674 | None:intergenic | 30.0% | |
| AATTGAGATCGATACAAAAC+TGG | + | chr7.3:51045411-51045430 | None:intergenic | 30.0% | |
| AGTAATGCAACATTGGAAAT+AGG | + | chr7.3:51045672-51045691 | None:intergenic | 30.0% | |
| ATATCACTATCATTGTGTTC+AGG | - | chr7.3:51044461-51044480 | MS.gene051262:CDS | 30.0% | |
| CAAATGTACATTGCAATCAA+AGG | + | chr7.3:51044813-51044832 | None:intergenic | 30.0% | |
| CATATTGAATACGTACAGAA+AGG | - | chr7.3:51046919-51046938 | MS.gene051262:intron | 30.0% | |
| CATTCCAAATTAAAGAGTAG+TGG | + | chr7.3:51046185-51046204 | None:intergenic | 30.0% | |
| CCGTATCATATTTCAGTTAA+AGG | - | chr7.3:51046286-51046305 | MS.gene051262:intron | 30.0% | |
| CTCTTAACTCTTATGCAAAT+TGG | - | chr7.3:51045558-51045577 | MS.gene051262:intron | 30.0% | |
| GTAAGGATGAATCAGAAAAA+GGG | - | chr7.3:51045899-51045918 | MS.gene051262:intron | 30.0% | |
| TAAATCATACCACACTACTT+GGG | + | chr7.3:51045961-51045980 | None:intergenic | 30.0% | |
| TGATATCAAAGTAGATAGCA+AGG | + | chr7.3:51045040-51045059 | None:intergenic | 30.0% | |
| TGTAACGAACAAAAGAATGA+AGG | + | chr7.3:51045228-51045247 | None:intergenic | 30.0% | |
| TGTAAGGATGAATCAGAAAA+AGG | - | chr7.3:51045898-51045917 | MS.gene051262:intron | 30.0% | |
| TTAAATCATACCACACTACT+TGG | + | chr7.3:51045962-51045981 | None:intergenic | 30.0% | |
| TTCCAAATCAAAATCGTCAA+AGG | + | chr7.3:51045830-51045849 | None:intergenic | 30.0% | |
| ! | ATTTAACACCTTTTTGCCAA+AGG | - | chr7.3:51046655-51046674 | MS.gene051262:intron | 30.0% |
| ! | TTTAACACCTTTTTGCCAAA+GGG | - | chr7.3:51046656-51046675 | MS.gene051262:intron | 30.0% |
| !! | ATTTGTAGAGTTGATACTGA+TGG | - | chr7.3:51046578-51046597 | MS.gene051262:intron | 30.0% |
| !!! | GGCTTTTTTCCTCTAATTTT+TGG | - | chr7.3:51044643-51044662 | MS.gene051262:CDS | 30.0% |
| !!! | TTCTTTTTTCTCTGTCTTAC+TGG | - | chr7.3:51045857-51045876 | MS.gene051262:intron | 30.0% |
| AACTCTACAAATGCACCAAA+AGG | + | chr7.3:51046570-51046589 | None:intergenic | 35.0% | |
| ATAAACCCTTCAAGAAGATC+CGG | + | chr7.3:51047112-51047131 | None:intergenic | 35.0% | |
| ATCAAAACCTTGTGTCAAAC+TGG | + | chr7.3:51044765-51044784 | None:intergenic | 35.0% | |
| CAAATCAAAATCGTCAAAGG+CGG | + | chr7.3:51045827-51045846 | None:intergenic | 35.0% | |
| CTTTAACTCATACCAGAAAG+TGG | + | chr7.3:51046119-51046138 | None:intergenic | 35.0% | |
| GAGTTATGTGAACACGATAA+AGG | - | chr7.3:51046751-51046770 | MS.gene051262:intron | 35.0% | |
| GCATCCACTACTCTTTAATT+TGG | - | chr7.3:51046178-51046197 | MS.gene051262:intron | 35.0% | |
| GTCAGGAAAATCTGTAATGT+TGG | - | chr7.3:51046989-51047008 | MS.gene051262:intron | 35.0% | |
| GTTGGTCATGCTATAAAACT+CGG | - | chr7.3:51047194-51047213 | MS.gene051262:intron | 35.0% | |
| TATATTCATCCTTCGAGCAA+TGG | - | chr7.3:51047287-51047306 | MS.gene051262:intron | 35.0% | |
| TGGAATATGATACCACTTTC+TGG | - | chr7.3:51046104-51046123 | MS.gene051262:intron | 35.0% | |
| TTCTTTGAGTCTGTCATGAA+TGG | - | chr7.3:51045372-51045391 | MS.gene051262:intron | 35.0% | |
| ! | AGAGTGAAGGAACTTTTTAG+AGG | - | chr7.3:51046611-51046630 | MS.gene051262:intron | 35.0% |
| ! | CTTTCTGGTATGAGTTAAAG+AGG | - | chr7.3:51046119-51046138 | MS.gene051262:intron | 35.0% |
| ! | TGAACCTCTCTAGAAAATGA+TGG | + | chr7.3:51045316-51045335 | None:intergenic | 35.0% |
| ! | TGAAGAATCTAGGATCTAGA+TGG | - | chr7.3:51044872-51044891 | MS.gene051262:CDS | 35.0% |
| !! | ATAGCCATCATTTTCTAGAG+AGG | - | chr7.3:51045309-51045328 | MS.gene051262:intron | 35.0% |
| !! | ATCATTTTCTAGAGAGGTTC+AGG | - | chr7.3:51045315-51045334 | MS.gene051262:intron | 35.0% |
| !!! | AGAGTGCTTTTTTGAACATC+TGG | + | chr7.3:51046432-51046451 | None:intergenic | 35.0% |
| !!! | TCAACCTTCTTTTTTGGTTG+AGG | + | chr7.3:51046716-51046735 | None:intergenic | 35.0% |
| AATCATGATTGCACTTCTCC+AGG | - | chr7.3:51047063-51047082 | MS.gene051262:intron | 40.0% | |
| ACATACCTCTTTGTAGACCA+GGG | + | chr7.3:51046960-51046979 | None:intergenic | 40.0% | |
| AGGTCATAGAGACTTGATCT+TGG | - | chr7.3:51046631-51046650 | MS.gene051262:intron | 40.0% | |
| CACAGCAATATGTCAAGTAC+TGG | + | chr7.3:51047032-51047051 | None:intergenic | 40.0% | |
| CTATAAAACTCGGCATCAGT+GGG | - | chr7.3:51047204-51047223 | MS.gene051262:intron | 40.0% | |
| GAAACCGAGTCTGCATAAAA+AGG | + | chr7.3:51046865-51046884 | None:intergenic | 40.0% | |
| GCAACCTCAACCAAAAAAGA+AGG | - | chr7.3:51046709-51046728 | MS.gene051262:intron | 40.0% | |
| GGAAGGAAGTAATGCAACAT+TGG | + | chr7.3:51045679-51045698 | None:intergenic | 40.0% | |
| GGTATGAGTTAAAGAGGCTA+TGG | - | chr7.3:51046125-51046144 | MS.gene051262:intron | 40.0% | |
| GGTCATAGAGACTTGATCTT+GGG | - | chr7.3:51046632-51046651 | MS.gene051262:intron | 40.0% | |
| GTATCGCTCTTTGTTGAATG+AGG | + | chr7.3:51044935-51044954 | None:intergenic | 40.0% | |
| TAAACCCTTCAAGAAGATCC+GGG | + | chr7.3:51047111-51047130 | None:intergenic | 40.0% | |
| TAGAGAGGTTCAGGTATTTC+AGG | - | chr7.3:51045324-51045343 | MS.gene051262:intron | 40.0% | |
| TATAAAACTCGGCATCAGTG+GGG | - | chr7.3:51047205-51047224 | MS.gene051262:intron | 40.0% | |
| TGAGGCTTGAACAACATTGT+TGG | + | chr7.3:51044917-51044936 | None:intergenic | 40.0% | |
| TTGTATGAGTGCACTGCAAA+GGG | + | chr7.3:51047265-51047284 | None:intergenic | 40.0% | |
| ! | AAAGGAAGATGGAAGTGTGT+GGG | - | chr7.3:51046304-51046323 | MS.gene051262:intron | 40.0% |
| ! | AGAATCTAGGATCTAGATGG+TGG | - | chr7.3:51044875-51044894 | MS.gene051262:CDS | 40.0% |
| ! | AGGTATGTGCTGTTATAGTC+AGG | - | chr7.3:51046972-51046991 | MS.gene051262:intron | 40.0% |
| ! | ATATTCATCATGGGAGCATG+AGG | - | chr7.3:51045713-51045732 | MS.gene051262:intron | 40.0% |
| ! | GGTTCCTTTTTATGCAGACT+CGG | - | chr7.3:51046858-51046877 | MS.gene051262:intron | 40.0% |
| ! | GTGTTGCGTAATTTTCGTGT+TGG | - | chr7.3:51047176-51047195 | MS.gene051262:intron | 40.0% |
| ! | TAAAGGAAGATGGAAGTGTG+TGG | - | chr7.3:51046303-51046322 | MS.gene051262:intron | 40.0% |
| ! | TAGGGCACCTCATAAAGTAA+TGG | + | chr7.3:51047343-51047362 | None:intergenic | 40.0% |
| ! | TTCATCTGTGTCGTGTTGAT+TGG | - | chr7.3:51047131-51047150 | MS.gene051262:intron | 40.0% |
| ! | TTTATGCAGACTCGGTTTCA+GGG | - | chr7.3:51046866-51046885 | MS.gene051262:intron | 40.0% |
| !! | AGCAATATGTCAAGTACTGG+AGG | + | chr7.3:51047029-51047048 | None:intergenic | 40.0% |
| !! | TGGTGTCATTGAAAGAGTGA+AGG | - | chr7.3:51046598-51046617 | MS.gene051262:intron | 40.0% |
| !! | TTTTATGCAGACTCGGTTTC+AGG | - | chr7.3:51046865-51046884 | MS.gene051262:intron | 40.0% |
| !!! | CGCCTTTGACGATTTTGATT+TGG | - | chr7.3:51045825-51045844 | MS.gene051262:intron | 40.0% |
| AGCATTGCCAGTTTGACACA+AGG | - | chr7.3:51044755-51044774 | MS.gene051262:intron | 45.0% | |
| AGGTACTTTCCCTCTTGGTA+GGG | + | chr7.3:51047361-51047380 | None:intergenic | 45.0% | |
| CACATACCTCTTTGTAGACC+AGG | + | chr7.3:51046961-51046980 | None:intergenic | 45.0% | |
| CTTGTATGAGTGCACTGCAA+AGG | + | chr7.3:51047266-51047285 | None:intergenic | 45.0% | |
| GCTATAAAACTCGGCATCAG+TGG | - | chr7.3:51047203-51047222 | MS.gene051262:intron | 45.0% | |
| GTACATCCATGAACTCTGTG+TGG | - | chr7.3:51045202-51045221 | MS.gene051262:CDS | 45.0% | |
| GTAGCATGCAATTAACCCCT+AGG | - | chr7.3:51045596-51045615 | MS.gene051262:intron | 45.0% | |
| TATCACCCTGGTCTACAAAG+AGG | - | chr7.3:51046952-51046971 | MS.gene051262:intron | 45.0% | |
| TCAATGGCGTCACTTACTGT+CGG | + | chr7.3:51045442-51045461 | None:intergenic | 45.0% | |
| TCATTGACACCATTGCTCGA+AGG | + | chr7.3:51047299-51047318 | None:intergenic | 45.0% | |
| TCTTTGTAGACCAGGGTGAT+AGG | + | chr7.3:51046953-51046972 | None:intergenic | 45.0% | |
| TGAGTCTGTCATGAATGGCA+CGG | - | chr7.3:51045377-51045396 | MS.gene051262:intron | 45.0% | |
| TGCATTCTTCCAAAACCACC+CGG | - | chr7.3:51047090-51047109 | MS.gene051262:intron | 45.0% | |
| TGTATGAGTGCACTGCAAAG+GGG | + | chr7.3:51047264-51047283 | None:intergenic | 45.0% | |
| TTTGGAAGAATGCAGCAACC+TGG | + | chr7.3:51047084-51047103 | None:intergenic | 45.0% | |
| ! | CTAGATGGTGGTTGCAATTG+TGG | - | chr7.3:51044887-51044906 | MS.gene051262:CDS | 45.0% |
| !! | ATCTGTGTCGTGTTGATTGG+CGG | - | chr7.3:51047134-51047153 | MS.gene051262:intron | 45.0% |
| !! | ATTATGTGGGCACTGACACA+AGG | - | chr7.3:51044714-51044733 | MS.gene051262:intron | 45.0% |
| AAAAAGCCACGCACCAGAAC+TGG | + | chr7.3:51044631-51044650 | None:intergenic | 50.0% | |
| AACCACCCGGATCTTCTTGA+AGG | - | chr7.3:51047103-51047122 | MS.gene051262:intron | 50.0% | |
| ACCACCCGGATCTTCTTGAA+GGG | - | chr7.3:51047104-51047123 | MS.gene051262:intron | 50.0% | |
| AGGGTAATCTCATGGCCCTT+TGG | + | chr7.3:51046674-51046693 | None:intergenic | 50.0% | |
| CAATGGCGTCACTTACTGTC+GGG | + | chr7.3:51045441-51045460 | None:intergenic | 50.0% | |
| CAGGTACTTTCCCTCTTGGT+AGG | + | chr7.3:51047362-51047381 | None:intergenic | 50.0% | |
| CGGACGAAAGGGTAATCTCA+TGG | + | chr7.3:51046682-51046701 | None:intergenic | 50.0% | |
| CTCATGGCCCTTTGGCAAAA+AGG | + | chr7.3:51046666-51046685 | None:intergenic | 50.0% | |
| GGAAAGTAAGCCTATCACCC+TGG | - | chr7.3:51046940-51046959 | MS.gene051262:intron | 50.0% | |
| TAAGCTGCACACGCAACCTA+GGG | + | chr7.3:51045615-51045634 | None:intergenic | 50.0% | |
| TGAAGGCCACACAGAGTTCA+TGG | + | chr7.3:51045211-51045230 | None:intergenic | 50.0% | |
| TGAGATTACCCTTTCGTCCG+AGG | - | chr7.3:51046682-51046701 | MS.gene051262:intron | 50.0% | |
| TGGTTGAGGTTGCTCATCCT+CGG | + | chr7.3:51046702-51046721 | None:intergenic | 50.0% | |
| TTAAGCTGCACACGCAACCT+AGG | + | chr7.3:51045616-51045635 | None:intergenic | 50.0% | |
| TTGCTCATCCTCGGACGAAA+GGG | + | chr7.3:51046693-51046712 | None:intergenic | 50.0% | |
| ! | ACTGCAAAGGGGTATGTCTC+AGG | + | chr7.3:51047253-51047272 | None:intergenic | 50.0% |
| ! | CAAGAAGATCCGGGTGGTTT+TGG | + | chr7.3:51047102-51047121 | None:intergenic | 50.0% |
| ! | TATGAGGTGCCCTACCAAGA+GGG | - | chr7.3:51047349-51047368 | MS.gene051262:intron | 50.0% |
| ! | TTATGAGGTGCCCTACCAAG+AGG | - | chr7.3:51047348-51047367 | MS.gene051262:intron | 50.0% |
| !! | GGCACTGACACAAGGTATTG+AGG | - | chr7.3:51044722-51044741 | MS.gene051262:intron | 50.0% |
| AAACTCGGCATCAGTGGGGA+AGG | - | chr7.3:51047209-51047228 | MS.gene051262:intron | 55.0% | |
| AACTCGGCATCAGTGGGGAA+GGG | - | chr7.3:51047210-51047229 | MS.gene051262:intron | 55.0% | |
| AAGCTGCACACGCAACCTAG+GGG | + | chr7.3:51045614-51045633 | None:intergenic | 55.0% | |
| ACCCTTCAAGAAGATCCGGG+TGG | + | chr7.3:51047108-51047127 | None:intergenic | 55.0% | |
| ACTGGAGCTGCACAGTGGAA+TGG | + | chr7.3:51044613-51044632 | None:intergenic | 55.0% | |
| CAGCAAGCTCCCAAGTAGTG+TGG | - | chr7.3:51045949-51045968 | MS.gene051262:intron | 55.0% | |
| CGTCAAAGGCGGCATAGTCA+CGG | + | chr7.3:51045816-51045835 | None:intergenic | 55.0% | |
| GTTGCTCATCCTCGGACGAA+AGG | + | chr7.3:51046694-51046713 | None:intergenic | 55.0% | |
| TTGTCGAGCAGGCTGGAATG+AGG | - | chr7.3:51045498-51045517 | MS.gene051262:intron | 55.0% | |
| !! | GGTGTTTTTGTCGAGCAGGC+TGG | - | chr7.3:51045491-51045510 | MS.gene051262:intron | 55.0% |
| !! | TCGTGTTGATTGGCGGTGAC+TGG | - | chr7.3:51047141-51047160 | MS.gene051262:intron | 55.0% |
| !!! | CAGGGGTGTTTTTGTCGAGC+AGG | - | chr7.3:51045487-51045506 | MS.gene051262:intron | 55.0% |
| ACTCGGCATCAGTGGGGAAG+GGG | - | chr7.3:51047211-51047230 | MS.gene051262:intron | 60.0% | |
| CCACTGTGCAGCTCCAGTTC+TGG | - | chr7.3:51044615-51044634 | MS.gene051262:CDS | 60.0% | |
| CCAGAACTGGAGCTGCACAG+TGG | + | chr7.3:51044618-51044637 | None:intergenic | 60.0% | |
| CTCGGCATCAGTGGGGAAGG+GGG | - | chr7.3:51047212-51047231 | MS.gene051262:intron | 65.0% | |
| ! | GCAGCTCCAGTTCTGGTGCG+TGG | - | chr7.3:51044622-51044641 | MS.gene051262:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 51044429 | 51047382 | 51044429 | ID=MS.gene051262 |
| chr7.3 | mRNA | 51044429 | 51047382 | 51044429 | ID=MS.gene051262.t1;Parent=MS.gene051262 |
| chr7.3 | exon | 51047363 | 51047382 | 51047363 | ID=MS.gene051262.t1.exon1;Parent=MS.gene051262.t1 |
| chr7.3 | CDS | 51047363 | 51047382 | 51047363 | ID=cds.MS.gene051262.t1;Parent=MS.gene051262.t1 |
| chr7.3 | exon | 51045039 | 51045225 | 51045039 | ID=MS.gene051262.t1.exon2;Parent=MS.gene051262.t1 |
| chr7.3 | CDS | 51045039 | 51045225 | 51045039 | ID=cds.MS.gene051262.t1;Parent=MS.gene051262.t1 |
| chr7.3 | exon | 51044838 | 51044936 | 51044838 | ID=MS.gene051262.t1.exon3;Parent=MS.gene051262.t1 |
| chr7.3 | CDS | 51044838 | 51044936 | 51044838 | ID=cds.MS.gene051262.t1;Parent=MS.gene051262.t1 |
| chr7.3 | exon | 51044429 | 51044686 | 51044429 | ID=MS.gene051262.t1.exon4;Parent=MS.gene051262.t1 |
| chr7.3 | CDS | 51044429 | 51044686 | 51044429 | ID=cds.MS.gene051262.t1;Parent=MS.gene051262.t1 |
| Gene Sequence |
| Protein sequence |
