AlfalfaGEDB | MS.gene05144

M. sativa cultivar XinJiangDaYe / MS.gene05144

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05144.t1	XP_013452818.1	94.1	471	24	2	1	471	1	467	1.70E-243	851.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05144.t1	B3H5A8	34.7	458	164	11	22	470	41	372	2.6e-51	204.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05144.t1	A0A072UBN0	94.1	471	24	2	1	471	1	467	1.2e-243	851.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene05144.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05144	MS.gene64738	0.80871	2.71E-50	-1.69E-46
MS.gene05144	MS.gene79881	-0.82266	2.10E-53	-1.69E-46
MS.gene05144	MS.gene80551	0.986932	1.81E-168	-1.69E-46
MS.gene05144	MS.gene80553	0.974742	1.08E-138	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05144.t1	MTR_6g477860	94.055	471	24	2	1	471	1	467	0.0	862
MS.gene05144.t1	MTR_6g477860	93.478	368	20	2	104	471	9	372	0.0	651
MS.gene05144.t1	MTR_3g064500	47.692	260	121	5	23	280	23	269	1.73e-55	189
MS.gene05144.t1	MTR_5g076960	36.771	446	229	12	32	469	18	418	6.17e-55	189
MS.gene05144.t1	MTR_1g067000	55.357	112	39	3	38	149	28	128	7.09e-34	129
MS.gene05144.t1	MTR_8g028655	60.638	94	29	2	46	139	53	138	1.12e-32	127
MS.gene05144.t1	MTR_7g118330	68.269	104	31	1	38	139	7	110	1.45e-31	129
MS.gene05144.t1	MTR_0123s0070	54.386	114	41	4	46	157	39	143	2.15e-31	122
MS.gene05144.t1	MTR_0123s0070	54.386	114	41	4	46	157	39	143	3.08e-31	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05144.t1	AT1G18330	44.224	303	98	9	46	340	39	278	3.25e-58	196
MS.gene05144.t1	AT1G18330	44.224	303	98	9	46	340	65	304	3.66e-58	196
MS.gene05144.t1	AT5G17300	66.250	160	43	3	40	199	38	186	2.03e-52	181
MS.gene05144.t1	AT3G10113	66.667	135	36	1	46	180	54	179	5.76e-46	163
MS.gene05144.t1	AT5G37260	55.233	172	62	3	33	204	12	168	7.80e-44	156
MS.gene05144.t1	AT3G09600	60.638	94	29	2	46	139	32	117	1.44e-32	126
MS.gene05144.t1	AT3G09600	60.638	94	29	2	46	139	32	117	1.44e-32	126
MS.gene05144.t1	AT3G09600	60.638	94	29	2	46	139	32	117	1.74e-32	125
MS.gene05144.t1	AT3G09600	60.638	94	29	2	46	139	32	117	1.77e-32	125
MS.gene05144.t1	AT3G09600	60.638	94	29	2	46	139	32	117	1.77e-32	125

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Find 118 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGCCTAAGAGGCAC+AGG	0.552171	6.4:-51266787	None:intergenic
AAAGAGTCAACTGATTTGCG+AGG	0.637562	6.4:-51265685	None:intergenic
AAATCAGTTGACTCTTTCAA+AGG	0.561001	6.4:+51265691	MS.gene05144:CDS
AAATTCTTTAATTGCTGGCT+TGG	0.424959	6.4:+51267011	MS.gene05144:CDS
AAGAGTCAACTGATTTGCGA+GGG	0.626425	6.4:-51265684	None:intergenic
AATCTTCATGCAGAACATAT+AGG	0.364568	6.4:+51265336	MS.gene05144:intron
ACAGTACAGAGGTAGGCGAT+TGG	0.570674	6.4:-51265780	None:intergenic
ACCAAGTGCAGACAGTACAG+AGG	0.666189	6.4:-51265791	None:intergenic
ACCCTCTTCCAGATTTCTTA+AGG	0.359010	6.4:-51266951	None:intergenic
ACCTCTGTACTGTCTGCACT+TGG	0.467315	6.4:+51265790	MS.gene05144:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGGAAAAAAAGTCTC+CGG	-	chr6.4:51264504-51264523	None:intergenic	30.0%
AAAAGATAAAGACAAGGGAT+TGG	-	chr6.4:51264627-51264646	None:intergenic	30.0%
AAAGATAAAGACAAGGGATT+GGG	-	chr6.4:51264626-51264645	None:intergenic	30.0%
AATCTTCATGCAGAACATAT+AGG	+	chr6.4:51265336-51265355	MS.gene05144:intron	30.0%
ACATGAAATCATCTAGACTT+TGG	+	chr6.4:51263984-51264003	MS.gene05144:intron	30.0%
AGCTATCAACTCTAATGAAA+TGG	+	chr6.4:51266549-51266568	MS.gene05144:CDS	30.0%
AGCTTAATACTAGTGATTTG+TGG	-	chr6.4:51266460-51266479	None:intergenic	30.0%
ATCACTAGTATTAAGCTGTT+TGG	+	chr6.4:51266463-51266482	MS.gene05144:CDS	30.0%
ATCTTCATGCAGAACATATA+GGG	+	chr6.4:51265337-51265356	MS.gene05144:intron	30.0%
ATTTCAAAACTAGTAAGGCA+TGG	-	chr6.4:51266359-51266378	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	51263416	51267071	51263416	ID=MS.gene05144
chr6.4	mRNA	51263416	51267071	51263416	ID=MS.gene05144.t1;Parent=MS.gene05144
chr6.4	exon	51263416	51263427	51263416	ID=MS.gene05144.t1.exon1;Parent=MS.gene05144.t1
chr6.4	CDS	51263416	51263427	51263416	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1
chr6.4	exon	51264706	51264831	51264706	ID=MS.gene05144.t1.exon2;Parent=MS.gene05144.t1
chr6.4	CDS	51264706	51264831	51264706	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1
chr6.4	exon	51265141	51265252	51265141	ID=MS.gene05144.t1.exon3;Parent=MS.gene05144.t1
chr6.4	CDS	51265141	51265252	51265141	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1
chr6.4	exon	51265349	51265410	51265349	ID=MS.gene05144.t1.exon4;Parent=MS.gene05144.t1
chr6.4	CDS	51265349	51265410	51265349	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1
chr6.4	exon	51265592	51266020	51265592	ID=MS.gene05144.t1.exon5;Parent=MS.gene05144.t1
chr6.4	CDS	51265592	51266020	51265592	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1
chr6.4	exon	51266397	51267071	51266397	ID=MS.gene05144.t1.exon6;Parent=MS.gene05144.t1
chr6.4	CDS	51266397	51267071	51266397	ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1

Gene Sequence

>MS.gene05144

ATGGAGACTAAGGTATATAACAATGAATAGTTCAAACTTGAGCCTTTTTTTAATACCCTTTTTATGATTTTGATCTTAATTTTGCATTTTCTTTAAAAAGTAAGGTTGATTCTTATATACTTCATGTCTCAACAAAAATATCTTTTCAGGTTCGTTGATTAAATAACTGATGTATCTGGTCGTCTATAACGGTTAACTGATGTCAGTTATTCAATGAACCTGAAAAAAGATTATTTGATTATATATGAGACTAGGGAGTAGGGGGAGTTTCTTTTTGGTTAAGAAACACATGTGCTTTAGAAGATATGTGTTTTGTGTACTAAATAGTATTTATTTTTGTTTGTACTTTTTAAGGAAAAACATGTTTTAGAATCTATGTGTTGTTTGTGTATTTCTAGAGTATTTTAGTTCCATAGGGAAGCTAAAAAAGTTCTATAGAAAATGGATTGGATAGTTTCTTGAATGTATTCAATAGTTGATCTCTGAAATAATAAATTGATATGGTAGTTGAGTCATAATTTTATCGGCATCTATGCTTTAAGAACCGATGTTTTAAAAACCGAACCAGACATGAAATCATCTAGACTTTGGCTCATGGTTCAACTGCTTTGAAAGGTTCAATTGTTTGAATCTTCTGGTTCGGTTTTTAAAACATTGGTAAGAAGTTGAAATTGTTGCATCATCTGGTTCGGATTTTAAAACATTGGTTACAAGTTGAAATTGTTTGCTGAATCATTCTTGTTATGCAAAGTGCTTACCTAAATAAGGTTAATTTATAGAAGAAAATCAGTATTTCTTTTGATTCCTTGTTCGTTGTCCCCTAGAATGTTGGAGCGAGGTTATAGAGAAGAGTATGTTATACATTGAATCTTGTAAGCACCTCAGTTGATAGTTTTCATGTATAACATTATTTGACATAGTGTTCTTACTGAAGTATCACTGAATATTTGGTTTTATGTGAGTGTATTTGCATGAGTTAGTATGTGAGATTTGAACGGGACGGCAATTAAGCTTAGGTCTATTTAACATGCTGCTGCTTGGTATGAAGCAGGTTTCATCCATCTTACATTCAATCCTCCACTCTTCCGGAGACTTTTTTTCCTCTTTTCATAGTAAAAGAGGGTTTCAACTTTCAATATGAATTCATCAATTTCTTTAAACGAAACATATTCTAGTGAGCATCAATTTCTTTCATCATGAAATTAGTCCCAATCCCTTGTCTTTATCTTTTGGTTTCAATTTTTTGTTATCGAAACGGTTTTTCAATTCATTAGCTACTTTTGAATGTAGAATCAAGTTCAAGGCACTAAGTCAACTGGAACAGGTAGTAAGTGCCATTCCAAAGGTGGATCACAGTCTGAAAATGATGCGAAGTCGCAGGATATACCTTCTGTCGGAAACAACCTTGCTCCCAAGGTTGTTTTACTTTCAACAATCTATAATATATTTTTTTTTTTAAGTGTTGCTATACAGTCGCTATAGCGGCTATTATTTTTGTAAACAAAAAAAATACCGCTATAGCATAGTGGAATTTGAACTGATGCTGTTCTGCAATACACTATTTAGTACAAAATGTTGTCAAATAGTGGCTATAACGGCACTACAGCACTGTTTCACAACGGCATTAGAACTAACCACTGTTTTCCGTAATTTGCTATTGACAACACTGATTGTTTTTGTTTCAATTTTACTTTTTGTCCTGAAACTTATTTCAATTTTCAACAGGTCAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACCGATGAAGAGCATCAAAAGTTCCTTGAGGCTTTGAAACTTTATGGCCGTGGCTGGCGTCAAATTGAAGGTAAAATTTCTTTACTAAATTTGGTTGTATTACTTTACAATAAGTGATTTTCCATGTCTTCTAGTTAGATATAAAGTCCTCTTAATCTTCATGCAGAACATATAGGGTCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTACTATTTTTTATTTCAGTAGATAATTATTGCTCGCAAATGAAGGTTATAAATGTAGATTTGGATTTTTAATTGGACTTTAAAGGAAAGGATTTGGTATTTCAATTAATAACATAATAAACACGAAGATGTATTATTGCATTTCAACATTCCATGATCTTAATATCTACTTGGTTGCAGGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCCCTTCATCCATACCCTCGCAAATCAGTTGACTCTTTCAAAGGACAGTTTGTCCCAAATGAATCAGAAACATCTCCATCCACTAACCTGTCAGTTGCAGAGAACGACACCCAATCGCCTACCTCTGTACTGTCTGCACTTGGTTCGGAAGCATTTGGCTCAGCAGCATTTTCTGAGCAGACTAACAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTCAGCTTGTCGCCTGTTGAAAAGGAGAATGATTGCCAGACATCCAAACCATCTGAGGAGGAAGAGAAAGGATCTCTAGCTTCAATTCCTTTATCCACCAACTCAAAACCACTTATGTCCATGGTATGATAAACTGCTTGAAATTCTTTGATTTAGCTTATGGTTCATAGGAGGACTCATGCAAAAGATTTTAGGGCCTGTATGAATTAGCATATTTGAGCTTATTTACTAGGATAATAATTTATGACACTGTTTTGGCATAGCTTATGAAAACAGCTTATAACATGTTCATAAGCTGTTTTTAGTTTATTTTCATAAGCTTTGCAGAATAGCTATTGAAAACAGTTTATAGCTTAAACGAAAACACATTGACTTTATTTTATAGAAATAATTTGTACACAAGCACTTATATTATATACGTTTATGTTATAAGTGTTTAAGTAAGTTCTTTATCCAAACCATGCCTTACTAGTTTTGAAATTATCTTGTATTATTGCAGAAGTCCGAGATTATTTCTTCTGAGGAAACTCAATCTTCCAAAGAAGATGCTGCAAATATGCCACAAATCACTAGTATTAAGCTGTTTGGTCGAACACTCTCTATGGGTTCTCAGAAGTCAATGAATGATGATGACGAAAATACTAAGCTAATAGCTATCAACTCTAATGAAATGGATGATCTTGAGAAGGTTGGGCAAAAAGAGGTATCAGAGCAACTTGATACAGAATTATCACTAGGCATGTGTACACCTGATGGAGCTCAAGTGAGCATCATGGAACAACAGAAGGAGAATCCATATGTCGGCGAGTGCGCAACTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCCACCTCATGCCATGCAATCATCAAATTCTTAATCCTGTGCCTCTTAGGCCTTGTTTGAAGGTAATAGCAAGAGAGGAGGAAAGTTCTTGCACTGGTTCGAACACTGAATCAGTCTGCGATATGGAAAATCAAAGCAAGAACAACTCATCAGATACCGATGATTCTCAAACTCAAAAACATCGTCAGGAAGGAGTTGTCCTTAAGAAATCTGGAAGAGGGTTTGTTCCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGCTGGCTTGGAAGAAAGAGAGGGACAAAGAGCTCGTGTGTGTTCATAG

Protein sequence

>MS.gene05144.t1

METKNQVQGTKSTGTGSKCHSKGGSQSENDAKSQDIPSVGNNLAPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQFVPNESETSPSTNLSVAENDTQSPTSVLSALGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPVEKENDCQTSKPSEEEEKGSLASIPLSTNSKPLMSMKSEIISSEETQSSKEDAANMPQITSIKLFGRTLSMGSQKSMNDDDENTKLIAINSNEMDDLEKVGQKEVSEQLDTELSLGMCTPDGAQVSIMEQQKENPYVGECATLPLWSLYQGLPAFHLMPCNHQILNPVPLRPCLKVIAREEESSCTGSNTESVCDMENQSKNNSSDTDDSQTQKHRQEGVVLKKSGRGFVPYKRCLAERDENSLIAGLEEREGQRARVCS