Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05144.t1 | XP_013452818.1 | 94.1 | 471 | 24 | 2 | 1 | 471 | 1 | 467 | 1.70E-243 | 851.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05144.t1 | B3H5A8 | 34.7 | 458 | 164 | 11 | 22 | 470 | 41 | 372 | 2.6e-51 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05144.t1 | A0A072UBN0 | 94.1 | 471 | 24 | 2 | 1 | 471 | 1 | 467 | 1.2e-243 | 851.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05144.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05144 | MS.gene64738 | 0.80871 | 2.71E-50 | -1.69E-46 |
| MS.gene05144 | MS.gene79881 | -0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene05144 | MS.gene80551 | 0.986932 | 1.81E-168 | -1.69E-46 |
| MS.gene05144 | MS.gene80553 | 0.974742 | 1.08E-138 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05144.t1 | MTR_6g477860 | 94.055 | 471 | 24 | 2 | 1 | 471 | 1 | 467 | 0.0 | 862 |
| MS.gene05144.t1 | MTR_6g477860 | 93.478 | 368 | 20 | 2 | 104 | 471 | 9 | 372 | 0.0 | 651 |
| MS.gene05144.t1 | MTR_3g064500 | 47.692 | 260 | 121 | 5 | 23 | 280 | 23 | 269 | 1.73e-55 | 189 |
| MS.gene05144.t1 | MTR_5g076960 | 36.771 | 446 | 229 | 12 | 32 | 469 | 18 | 418 | 6.17e-55 | 189 |
| MS.gene05144.t1 | MTR_1g067000 | 55.357 | 112 | 39 | 3 | 38 | 149 | 28 | 128 | 7.09e-34 | 129 |
| MS.gene05144.t1 | MTR_8g028655 | 60.638 | 94 | 29 | 2 | 46 | 139 | 53 | 138 | 1.12e-32 | 127 |
| MS.gene05144.t1 | MTR_7g118330 | 68.269 | 104 | 31 | 1 | 38 | 139 | 7 | 110 | 1.45e-31 | 129 |
| MS.gene05144.t1 | MTR_0123s0070 | 54.386 | 114 | 41 | 4 | 46 | 157 | 39 | 143 | 2.15e-31 | 122 |
| MS.gene05144.t1 | MTR_0123s0070 | 54.386 | 114 | 41 | 4 | 46 | 157 | 39 | 143 | 3.08e-31 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05144.t1 | AT1G18330 | 44.224 | 303 | 98 | 9 | 46 | 340 | 39 | 278 | 3.25e-58 | 196 |
| MS.gene05144.t1 | AT1G18330 | 44.224 | 303 | 98 | 9 | 46 | 340 | 65 | 304 | 3.66e-58 | 196 |
| MS.gene05144.t1 | AT5G17300 | 66.250 | 160 | 43 | 3 | 40 | 199 | 38 | 186 | 2.03e-52 | 181 |
| MS.gene05144.t1 | AT3G10113 | 66.667 | 135 | 36 | 1 | 46 | 180 | 54 | 179 | 5.76e-46 | 163 |
| MS.gene05144.t1 | AT5G37260 | 55.233 | 172 | 62 | 3 | 33 | 204 | 12 | 168 | 7.80e-44 | 156 |
| MS.gene05144.t1 | AT3G09600 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.44e-32 | 126 |
| MS.gene05144.t1 | AT3G09600 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.44e-32 | 126 |
| MS.gene05144.t1 | AT3G09600 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.74e-32 | 125 |
| MS.gene05144.t1 | AT3G09600 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.77e-32 | 125 |
| MS.gene05144.t1 | AT3G09600 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.77e-32 | 125 |
| MS.gene05144.t1 | AT5G52660 | 59.184 | 98 | 32 | 2 | 42 | 139 | 57 | 146 | 1.09e-31 | 124 |
| MS.gene05144.t1 | AT5G52660 | 59.184 | 98 | 32 | 2 | 42 | 139 | 57 | 146 | 1.10e-31 | 124 |
| MS.gene05144.t1 | AT1G01520 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 6.69e-31 | 121 |
| MS.gene05144.t1 | AT1G01520 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.54e-31 | 120 |
| MS.gene05144.t1 | AT1G01520 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.54e-31 | 120 |
| MS.gene05144.t1 | AT1G01520 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.78e-31 | 120 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.34e-30 | 125 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.39e-30 | 125 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.39e-30 | 125 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.39e-30 | 125 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.39e-30 | 125 |
| MS.gene05144.t1 | AT1G01060 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.39e-30 | 125 |
| MS.gene05144.t1 | AT4G01280 | 60.638 | 94 | 29 | 2 | 46 | 139 | 48 | 133 | 1.39e-30 | 120 |
| MS.gene05144.t1 | AT5G02840 | 58.511 | 94 | 31 | 2 | 46 | 139 | 37 | 122 | 1.71e-30 | 120 |
| MS.gene05144.t1 | AT5G02840 | 58.511 | 94 | 31 | 2 | 46 | 139 | 37 | 122 | 1.96e-30 | 120 |
| MS.gene05144.t1 | AT5G02840 | 58.511 | 94 | 31 | 2 | 46 | 139 | 37 | 122 | 1.96e-30 | 120 |
| MS.gene05144.t1 | AT5G02840 | 58.511 | 94 | 31 | 2 | 46 | 139 | 37 | 122 | 2.26e-30 | 119 |
| MS.gene05144.t1 | AT5G02840 | 58.511 | 94 | 31 | 2 | 46 | 139 | 37 | 122 | 3.37e-30 | 119 |
| MS.gene05144.t1 | AT2G46830 | 63.529 | 85 | 31 | 0 | 38 | 122 | 5 | 89 | 3.53e-30 | 124 |
| MS.gene05144.t1 | AT4G01280 | 39.487 | 195 | 81 | 5 | 46 | 240 | 48 | 205 | 1.44e-29 | 117 |
| MS.gene05144.t1 | AT5G17300 | 59.322 | 118 | 37 | 3 | 82 | 199 | 5 | 111 | 8.59e-22 | 96.3 |
| MS.gene05144.t1 | AT3G09600 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 6.20e-15 | 74.7 |
| MS.gene05144.t1 | AT3G09600 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 6.20e-15 | 74.7 |
| MS.gene05144.t1 | AT3G09600 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 9.77e-15 | 73.9 |
| MS.gene05144.t1 | AT3G09600 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 9.77e-15 | 73.9 |
Find 118 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGGCTTTGAAACTTTA+TGG | 0.148316 | 6.4:+51265207 | MS.gene05144:CDS |
| CTCTTCCTCCTCAGATGGTT+TGG | 0.248334 | 6.4:-51265941 | None:intergenic |
| CATATTTGCAGCATCTTCTT+TGG | 0.255626 | 6.4:-51266434 | None:intergenic |
| TCGAATCTGAACTGCAGTTT+TGG | 0.267753 | 6.4:-51265361 | None:intergenic |
| CCTCAGATGGTTTGGATGTC+TGG | 0.272930 | 6.4:-51265933 | None:intergenic |
| TTCTTAATCCTGTGCCTCTT+AGG | 0.290915 | 6.4:+51266779 | MS.gene05144:CDS |
| CTTTGTTTAGTGATGGTATA+CGG | 0.298682 | 6.4:-51265150 | None:intergenic |
| GATGAAAATTCTTTAATTGC+TGG | 0.298848 | 6.4:+51267006 | MS.gene05144:CDS |
| GGAGATGTTTCTGATTCATT+TGG | 0.303011 | 6.4:-51265724 | None:intergenic |
| ATCTCGGTGGTGCAAGAATT+TGG | 0.321806 | 6.4:-51265868 | None:intergenic |
| GTTTGGTCGAACACTCTCTA+TGG | 0.333118 | 6.4:+51266480 | MS.gene05144:CDS |
| CACTGAATCAGTCTGCGATA+TGG | 0.346626 | 6.4:+51266855 | MS.gene05144:CDS |
| ACCCTCTTCCAGATTTCTTA+AGG | 0.359010 | 6.4:-51266951 | None:intergenic |
| AATCTTCATGCAGAACATAT+AGG | 0.364568 | 6.4:+51265336 | MS.gene05144:intron |
| GCCTCTTAGGCCTTGTTTGA+AGG | 0.370068 | 6.4:+51266792 | MS.gene05144:CDS |
| GGAGTTGTCCTTAAGAAATC+TGG | 0.375864 | 6.4:+51266943 | MS.gene05144:CDS |
| GTTGCGCACTCGCCGACATA+TGG | 0.378386 | 6.4:-51266691 | None:intergenic |
| GAGATGTTTCTGATTCATTT+GGG | 0.381108 | 6.4:-51265723 | None:intergenic |
| GCACTTGGTTCGGAAGCATT+TGG | 0.382637 | 6.4:+51265805 | MS.gene05144:CDS |
| AGCTATCAACTCTAATGAAA+TGG | 0.384116 | 6.4:+51266549 | MS.gene05144:CDS |
| ATCACTAGTATTAAGCTGTT+TGG | 0.389280 | 6.4:+51266463 | MS.gene05144:CDS |
| TTCAGACTGTGATCCACCTT+TGG | 0.402680 | 6.4:-51264755 | None:intergenic |
| GGTATGTCAATTGGCTGAAT+AGG | 0.403494 | 6.4:-51265625 | None:intergenic |
| GGATGAAGGGGTTTCCTCTT+CGG | 0.405395 | 6.4:-51265658 | None:intergenic |
| TCACTAAACAAAGGGAGAAA+TGG | 0.418116 | 6.4:+51265160 | MS.gene05144:CDS |
| AAATTCTTTAATTGCTGGCT+TGG | 0.424959 | 6.4:+51267011 | MS.gene05144:CDS |
| GGCACTAAGTCAACTGGAAC+AGG | 0.425108 | 6.4:+51264718 | MS.gene05144:CDS |
| CCTTTCTCTTCCTCCTCAGA+TGG | 0.426336 | 6.4:-51265946 | None:intergenic |
| ATCTTCATGCAGAACATATA+GGG | 0.428042 | 6.4:+51265337 | MS.gene05144:intron |
| CAGCTTGTCGCCTGTTGAAA+AGG | 0.429297 | 6.4:+51265900 | MS.gene05144:CDS |
| TTCCTCTTCGGCCGAGGAGG+AGG | 0.434146 | 6.4:-51265646 | None:intergenic |
| TGAATGTAGAATCAAGTTCA+AGG | 0.436192 | 6.4:+51264697 | MS.gene05144:intron |
| GGACTTTCAGCACTGCCATC+AGG | 0.443949 | 6.4:-51265604 | None:intergenic |
| TGTACTGTCTGCACTTGGTT+CGG | 0.453033 | 6.4:+51265795 | MS.gene05144:CDS |
| TCAACTGATTTGCGAGGGTA+TGG | 0.453549 | 6.4:-51265679 | None:intergenic |
| GTTCAAGGCACTAAGTCAAC+TGG | 0.454976 | 6.4:+51264712 | MS.gene05144:CDS |
| TTTCTCCCTTTGTTTAGTGA+TGG | 0.457327 | 6.4:-51265157 | None:intergenic |
| CGAGGAGGAGGTATGTCAAT+TGG | 0.460852 | 6.4:-51265634 | None:intergenic |
| TGAAACTTTATGGCCGTGGC+TGG | 0.464106 | 6.4:+51265217 | MS.gene05144:CDS |
| ACCTCTGTACTGTCTGCACT+TGG | 0.467315 | 6.4:+51265790 | MS.gene05144:CDS |
| TGGATGATCTTGAGAAGGTT+GGG | 0.471398 | 6.4:+51266569 | MS.gene05144:CDS |
| ATGCTCACTTGAGCTCCATC+AGG | 0.474418 | 6.4:-51266646 | None:intergenic |
| AGCTTAATACTAGTGATTTG+TGG | 0.477782 | 6.4:-51266457 | None:intergenic |
| CGGAAACAACCTTGCTCCCA+AGG | 0.482656 | 6.4:+51264810 | MS.gene05144:CDS |
| ACCTTCAAACAAGGCCTAAG+AGG | 0.484525 | 6.4:-51266793 | None:intergenic |
| GGTGGAAAGCTGGAAGGCCT+TGG | 0.485291 | 6.4:-51266735 | None:intergenic |
| ATTTGCGAGGGTATGGATGA+AGG | 0.487003 | 6.4:-51265672 | None:intergenic |
| CTCTGCAACTGACAGGTTAG+TGG | 0.488691 | 6.4:-51265749 | None:intergenic |
| CAGTACAGAGGTAGGCGATT+GGG | 0.490395 | 6.4:-51265779 | None:intergenic |
| TACTTGGTTGCAGGTTGTGC+GGG | 0.493357 | 6.4:+51265579 | MS.gene05144:intron |
| AGGGGTTTCCTCTTCGGCCG+AGG | 0.499231 | 6.4:-51265652 | None:intergenic |
| CATGGCATGAGGTGGAAAGC+TGG | 0.502566 | 6.4:-51266745 | None:intergenic |
| CGTGGCTGGCGTCAAATTGA+AGG | 0.507871 | 6.4:+51265231 | MS.gene05144:CDS |
| CAAGCTGACCGGGTGAATCT+CGG | 0.508422 | 6.4:-51265884 | None:intergenic |
| TTTGGTCGAACACTCTCTAT+GGG | 0.514976 | 6.4:+51266481 | MS.gene05144:CDS |
| ATTTGCTACAATGGAGACTA+AGG | 0.515528 | 6.4:+51263406 | None:intergenic |
| TATCATACCATGGACATAAG+TGG | 0.516937 | 6.4:-51266006 | None:intergenic |
| CAACAGGCGACAAGCTGACC+GGG | 0.523649 | 6.4:-51265894 | None:intergenic |
| CCATCTGAGGAGGAAGAGAA+AGG | 0.527813 | 6.4:+51265946 | MS.gene05144:CDS |
| TCAACAGGCGACAAGCTGAC+CGG | 0.528816 | 6.4:-51265895 | None:intergenic |
| TGTCGTTCTCTGCAACTGAC+AGG | 0.529046 | 6.4:-51265756 | None:intergenic |
| TTAAGAATTTGATGATTGCA+TGG | 0.529235 | 6.4:-51266763 | None:intergenic |
| GTCCGAGATTATTTCTTCTG+AGG | 0.535139 | 6.4:+51266399 | MS.gene05144:CDS |
| ATGGATGATCTTGAGAAGGT+TGG | 0.536503 | 6.4:+51266568 | MS.gene05144:CDS |
| CTCAAAACCACTTATGTCCA+TGG | 0.537292 | 6.4:+51265999 | MS.gene05144:CDS |
| GCTTTGAAACTTTATGGCCG+TGG | 0.537498 | 6.4:+51265213 | MS.gene05144:CDS |
| GCAAGGTTGTTTCCGACAGA+AGG | 0.537798 | 6.4:-51264802 | None:intergenic |
| TTGCGAGGGTATGGATGAAG+GGG | 0.537852 | 6.4:-51265670 | None:intergenic |
| TTTGCGAGGGTATGGATGAA+GGG | 0.538270 | 6.4:-51265671 | None:intergenic |
| GTCCTTAAGAAATCTGGAAG+AGG | 0.539236 | 6.4:+51266949 | MS.gene05144:CDS |
| GTATACCATCACTAAACAAA+GGG | 0.540490 | 6.4:+51265152 | MS.gene05144:CDS |
| GTAAAACAACCTTGGGAGCA+AGG | 0.542630 | 6.4:-51264819 | None:intergenic |
| CTACTTGGTTGCAGGTTGTG+CGG | 0.547281 | 6.4:+51265578 | MS.gene05144:intron |
| GAGGAGGAAAGTTCTTGCAC+TGG | 0.548593 | 6.4:+51266826 | MS.gene05144:CDS |
| TTTGAAGGTAATAGCAAGAG+AGG | 0.549454 | 6.4:+51266807 | MS.gene05144:CDS |
| AAACAAGGCCTAAGAGGCAC+AGG | 0.552171 | 6.4:-51266787 | None:intergenic |
| CTAGGCATGTGTACACCTGA+TGG | 0.552985 | 6.4:+51266631 | MS.gene05144:CDS |
| GGTTTCCTCTTCGGCCGAGG+AGG | 0.557391 | 6.4:-51265649 | None:intergenic |
| TTCCTCAGAAGAAATAATCT+CGG | 0.560827 | 6.4:-51266401 | None:intergenic |
| AAATCAGTTGACTCTTTCAA+AGG | 0.561001 | 6.4:+51265691 | MS.gene05144:CDS |
| TCCTTAAGAAATCTGGAAGA+GGG | 0.563781 | 6.4:+51266950 | MS.gene05144:CDS |
| TGAAAATGATGCGAAGTCGC+AGG | 0.563849 | 6.4:+51264774 | MS.gene05144:CDS |
| ACAGTACAGAGGTAGGCGAT+TGG | 0.570674 | 6.4:-51265780 | None:intergenic |
| CTTCAATTTGACGCCAGCCA+CGG | 0.571186 | 6.4:-51265230 | None:intergenic |
| TACCTCCTCCTCGGCCGAAG+AGG | 0.581749 | 6.4:+51265644 | MS.gene05144:CDS |
| CGTATACCATCACTAAACAA+AGG | 0.584691 | 6.4:+51265151 | MS.gene05144:CDS |
| TGCTGGCTTGGAAGAAAGAG+AGG | 0.586743 | 6.4:+51267023 | MS.gene05144:CDS |
| TGGAGCTCAAGTGAGCATCA+TGG | 0.586943 | 6.4:+51266651 | MS.gene05144:CDS |
| CCAGACATCCAAACCATCTG+AGG | 0.593425 | 6.4:+51265933 | MS.gene05144:CDS |
| ACTGTGATCCACCTTTGGAA+TGG | 0.594883 | 6.4:-51264750 | None:intergenic |
| CAGGTTGTGCGGGAACCTGA+TGG | 0.598426 | 6.4:+51265589 | MS.gene05144:intron |
| TTGCACCACCGAGATTCACC+CGG | 0.599354 | 6.4:+51265876 | MS.gene05144:CDS |
| AGTGCGCAACTTTACCATTG+TGG | 0.600355 | 6.4:+51266704 | MS.gene05144:CDS |
| CTTGATACAGAATTATCACT+AGG | 0.603577 | 6.4:+51266613 | MS.gene05144:CDS |
| CTTGCTATTACCTTCAAACA+AGG | 0.605820 | 6.4:-51266802 | None:intergenic |
| AGTAAGTGCCATTCCAAAGG+TGG | 0.606494 | 6.4:+51264742 | MS.gene05144:CDS |
| GAGCATCATGGAACAACAGA+AGG | 0.607887 | 6.4:+51266663 | MS.gene05144:CDS |
| GCAACTGACAGGTTAGTGGA+TGG | 0.608909 | 6.4:-51265745 | None:intergenic |
| GAAGGTAATAGCAAGAGAGG+AGG | 0.609367 | 6.4:+51266810 | MS.gene05144:CDS |
| GCATGAGGTGGAAAGCTGGA+AGG | 0.615795 | 6.4:-51266741 | None:intergenic |
| CATAAAGTTTCAAAGCCTCA+AGG | 0.622366 | 6.4:-51265206 | None:intergenic |
| GATGATTGCATGGCATGAGG+TGG | 0.625757 | 6.4:-51266753 | None:intergenic |
| AAGAGTCAACTGATTTGCGA+GGG | 0.626425 | 6.4:-51265684 | None:intergenic |
| GGTAGTAAGTGCCATTCCAA+AGG | 0.631426 | 6.4:+51264739 | MS.gene05144:CDS |
| TCGCAGGATATACCTTCTGT+CGG | 0.637342 | 6.4:+51264790 | MS.gene05144:CDS |
| AGTGCAGACAGTACAGAGGT+AGG | 0.637534 | 6.4:-51265787 | None:intergenic |
| AAAGAGTCAACTGATTTGCG+AGG | 0.637562 | 6.4:-51265685 | None:intergenic |
| GACATCCAAACCATCTGAGG+AGG | 0.638275 | 6.4:+51265936 | MS.gene05144:CDS |
| CAGAAGGAGAATCCATATGT+CGG | 0.647729 | 6.4:+51266679 | MS.gene05144:CDS |
| CAATTGACATACCTCCTCCT+CGG | 0.655187 | 6.4:+51265635 | MS.gene05144:CDS |
| TGAAATGGATGATCTTGAGA+AGG | 0.659901 | 6.4:+51266564 | MS.gene05144:CDS |
| TTTGATGATTGCATGGCATG+AGG | 0.660991 | 6.4:-51266756 | None:intergenic |
| ACCAAGTGCAGACAGTACAG+AGG | 0.666189 | 6.4:-51265791 | None:intergenic |
| CCATTGTGGAGTTTGTACCA+AGG | 0.677183 | 6.4:+51266718 | MS.gene05144:CDS |
| GCTGGCTTGGAAGAAAGAGA+GGG | 0.682057 | 6.4:+51267024 | MS.gene05144:CDS |
| AGAGCATCAAAAGTTCCTTG+AGG | 0.696601 | 6.4:+51265191 | MS.gene05144:CDS |
| CCTTGGTACAAACTCCACAA+TGG | 0.705024 | 6.4:-51266718 | None:intergenic |
| GCTGACCGGGTGAATCTCGG+TGG | 0.721988 | 6.4:-51265881 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTCTTTACTAAATT+TGG | + | chr6.4:51265254-51265273 | MS.gene05144:intron | 10.0% |
| !! | TAAAAAAGTTCTATAGAAAA+TGG | + | chr6.4:51263838-51263857 | MS.gene05144:intron | 15.0% |
| !! | TAAGATCAAAATCATAAAAA+GGG | - | chr6.4:51263474-51263493 | None:intergenic | 15.0% |
| !! | TTAAGATCAAAATCATAAAA+AGG | - | chr6.4:51263475-51263494 | None:intergenic | 15.0% |
| !!! | ATAAAAAGGGTATTAAAAAA+AGG | - | chr6.4:51263461-51263480 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTTGTACTTTTTA+AGG | + | chr6.4:51263748-51263767 | MS.gene05144:intron | 15.0% |
| !!! | TAATCAAATAATCTTTTTTC+AGG | - | chr6.4:51263637-51263656 | None:intergenic | 15.0% |
| !!! | TCTATAAATTAACCTTATTT+AGG | - | chr6.4:51264176-51264195 | None:intergenic | 15.0% |
| !!! | TCTGAAATAATAAATTGATA+TGG | + | chr6.4:51263897-51263916 | MS.gene05144:intron | 15.0% |
| !! | AGATAATTTCAAAACTAGTA+AGG | - | chr6.4:51266364-51266383 | None:intergenic | 20.0% |
| !! | ATTTGATTATATATGAGACT+AGG | + | chr6.4:51263648-51263667 | MS.gene05144:intron | 20.0% |
| !! | TGAAAATTGAAATAAGTTTC+AGG | - | chr6.4:51265117-51265136 | None:intergenic | 20.0% |
| !! | TTTGATTATATATGAGACTA+GGG | + | chr6.4:51263649-51263668 | MS.gene05144:intron | 20.0% |
| !!! | AAATTCTTTGATTTAGCTTA+TGG | + | chr6.4:51266038-51266057 | MS.gene05144:intron | 20.0% |
| !!! | AACTTATTTCAATTTTCAAC+AGG | + | chr6.4:51265119-51265138 | MS.gene05144:intron | 20.0% |
| !!! | AATAATTTATGACACTGTTT+TGG | + | chr6.4:51266133-51266152 | MS.gene05144:intron | 20.0% |
| !!! | GATTTTTAATTGGACTTTAA+AGG | + | chr6.4:51265475-51265494 | MS.gene05144:intron | 20.0% |
| !!! | TAGTTGAGTCATAATTTTAT+CGG | + | chr6.4:51263920-51263939 | MS.gene05144:intron | 20.0% |
| !!! | TCAATTTTTTGTTATCGAAA+CGG | + | chr6.4:51264651-51264670 | MS.gene05144:intron | 20.0% |
| !!! | TGCATTTTCTTTAAAAAGTA+AGG | + | chr6.4:51263498-51263517 | MS.gene05144:intron | 20.0% |
| !!! | TGTAGATTTGGATTTTTAAT+TGG | + | chr6.4:51265465-51265484 | MS.gene05144:intron | 20.0% |
| ! | AAACCAAAAGATAAAGACAA+GGG | - | chr6.4:51264632-51264651 | None:intergenic | 25.0% |
| ! | AAGTTCTATAGAAAATGGAT+TGG | + | chr6.4:51263843-51263862 | MS.gene05144:intron | 25.0% |
| ! | CATATTTGAGCTTATTTACT+AGG | + | chr6.4:51266108-51266127 | MS.gene05144:intron | 25.0% |
| ! | GAAGGTTATAAATGTAGATT+TGG | + | chr6.4:51265453-51265472 | MS.gene05144:intron | 25.0% |
| ! | GATGAAAATTCTTTAATTGC+TGG | + | chr6.4:51267006-51267025 | MS.gene05144:CDS | 25.0% |
| ! | GATTAAATAACTGATGTATC+TGG | + | chr6.4:51263572-51263591 | MS.gene05144:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | + | chr6.4:51264982-51265001 | MS.gene05144:intron | 25.0% |
| ! | TCAAATATGCTAATTCATAC+AGG | - | chr6.4:51266097-51266116 | None:intergenic | 25.0% |
| ! | TTATATCTAACTAGAAGACA+TGG | - | chr6.4:51265307-51265326 | None:intergenic | 25.0% |
| !! | CTCAACAAAAATATCTTTTC+AGG | + | chr6.4:51263543-51263562 | MS.gene05144:intron | 25.0% |
| !! | TCAGCTAAACATCTTTTATA+TGG | - | chr6.4:51266982-51267001 | None:intergenic | 25.0% |
| !! | TTAAGAATTTGATGATTGCA+TGG | - | chr6.4:51266766-51266785 | None:intergenic | 25.0% |
| !! | TTAATTGGACTTTAAAGGAA+AGG | + | chr6.4:51265480-51265499 | MS.gene05144:intron | 25.0% |
| !!! | TAGAGTATTTTAGTTCCATA+GGG | + | chr6.4:51263811-51263830 | MS.gene05144:intron | 25.0% |
| !!! | TTTTTGAGTTTGAGAATCAT+CGG | - | chr6.4:51266911-51266930 | None:intergenic | 25.0% |
| AAAAGAGGAAAAAAAGTCTC+CGG | - | chr6.4:51264504-51264523 | None:intergenic | 30.0% | |
| AAAAGATAAAGACAAGGGAT+TGG | - | chr6.4:51264627-51264646 | None:intergenic | 30.0% | |
| AAAGATAAAGACAAGGGATT+GGG | - | chr6.4:51264626-51264645 | None:intergenic | 30.0% | |
| AATCTTCATGCAGAACATAT+AGG | + | chr6.4:51265336-51265355 | MS.gene05144:intron | 30.0% | |
| ACATGAAATCATCTAGACTT+TGG | + | chr6.4:51263984-51264003 | MS.gene05144:intron | 30.0% | |
| AGCTATCAACTCTAATGAAA+TGG | + | chr6.4:51266549-51266568 | MS.gene05144:CDS | 30.0% | |
| AGCTTAATACTAGTGATTTG+TGG | - | chr6.4:51266460-51266479 | None:intergenic | 30.0% | |
| ATCACTAGTATTAAGCTGTT+TGG | + | chr6.4:51266463-51266482 | MS.gene05144:CDS | 30.0% | |
| ATCTTCATGCAGAACATATA+GGG | + | chr6.4:51265337-51265356 | MS.gene05144:intron | 30.0% | |
| ATTTCAAAACTAGTAAGGCA+TGG | - | chr6.4:51266359-51266378 | None:intergenic | 30.0% | |
| CCAAGTAGATATTAAGATCA+TGG | - | chr6.4:51265566-51265585 | None:intergenic | 30.0% | |
| CCATGATCTTAATATCTACT+TGG | + | chr6.4:51265563-51265582 | MS.gene05144:intron | 30.0% | |
| CTTGATACAGAATTATCACT+AGG | + | chr6.4:51266613-51266632 | MS.gene05144:CDS | 30.0% | |
| GAAACCAAAAGATAAAGACA+AGG | - | chr6.4:51264633-51264652 | None:intergenic | 30.0% | |
| GTATACCATCACTAAACAAA+GGG | + | chr6.4:51265152-51265171 | MS.gene05144:CDS | 30.0% | |
| GTGTTGTCAATAGCAAATTA+CGG | - | chr6.4:51265063-51265082 | None:intergenic | 30.0% | |
| GTTAGTATGTGAGATTTGAA+CGG | + | chr6.4:51264391-51264410 | MS.gene05144:intron | 30.0% | |
| GTTCAATTGTTTGAATCTTC+TGG | + | chr6.4:51264031-51264050 | MS.gene05144:intron | 30.0% | |
| GTTGAAAGTAAAACAACCTT+GGG | - | chr6.4:51264829-51264848 | None:intergenic | 30.0% | |
| TAATTATTGCTCGCAAATGA+AGG | + | chr6.4:51265435-51265454 | MS.gene05144:intron | 30.0% | |
| TACATGAAAACTATCAACTG+AGG | - | chr6.4:51264298-51264317 | None:intergenic | 30.0% | |
| TGAATGTAGAATCAAGTTCA+AGG | + | chr6.4:51264697-51264716 | MS.gene05144:intron | 30.0% | |
| TGTTGAAAGTAAAACAACCT+TGG | - | chr6.4:51264830-51264849 | None:intergenic | 30.0% | |
| TTAGTATGTGAGATTTGAAC+GGG | + | chr6.4:51264392-51264411 | MS.gene05144:intron | 30.0% | |
| TTCCTCAGAAGAAATAATCT+CGG | - | chr6.4:51266404-51266423 | None:intergenic | 30.0% | |
| TTGTCAAATAGTGGCTATAA+CGG | + | chr6.4:51264991-51265010 | MS.gene05144:intron | 30.0% | |
| ! | AAATCAGTTGACTCTTTCAA+AGG | + | chr6.4:51265691-51265710 | MS.gene05144:CDS | 30.0% |
| ! | AAATTCTTTAATTGCTGGCT+TGG | + | chr6.4:51267011-51267030 | MS.gene05144:CDS | 30.0% |
| ! | AATCCCTTGTCTTTATCTTT+TGG | + | chr6.4:51264626-51264645 | MS.gene05144:intron | 30.0% |
| ! | ATTGTTTGAATCTTCTGGTT+CGG | + | chr6.4:51264036-51264055 | MS.gene05144:intron | 30.0% |
| ! | ATTTCAATTTTCAACAGGTC+AGG | + | chr6.4:51265124-51265143 | MS.gene05144:intron | 30.0% |
| ! | CCTCTTTTCATAGTAAAAGA+GGG | + | chr6.4:51264516-51264535 | MS.gene05144:intron | 30.0% |
| ! | CTGAAGTATCACTGAATATT+TGG | + | chr6.4:51264344-51264363 | MS.gene05144:intron | 30.0% |
| ! | CTTTGTTTAGTGATGGTATA+CGG | - | chr6.4:51265153-51265172 | None:intergenic | 30.0% |
| ! | GACTCATGCAAAAGATTTTA+GGG | + | chr6.4:51266071-51266090 | MS.gene05144:intron | 30.0% |
| ! | GAGATGTTTCTGATTCATTT+GGG | - | chr6.4:51265726-51265745 | None:intergenic | 30.0% |
| ! | TAGAGAAAAACTTTTGAGCA+TGG | - | chr6.4:51265389-51265408 | None:intergenic | 30.0% |
| ! | TCCTCTTTTCATAGTAAAAG+AGG | + | chr6.4:51264515-51264534 | MS.gene05144:intron | 30.0% |
| ! | TGATTTAGCTTATGGTTCAT+AGG | + | chr6.4:51266046-51266065 | MS.gene05144:intron | 30.0% |
| ! | TGCTCAAAAGTTTTTCTCTA+AGG | + | chr6.4:51265389-51265408 | MS.gene05144:CDS | 30.0% |
| !!! | CTAGAGTATTTTAGTTCCAT+AGG | + | chr6.4:51263810-51263829 | MS.gene05144:intron | 30.0% |
| !!! | TGGTTCGGATTTTAAAACAT+TGG | + | chr6.4:51264100-51264119 | MS.gene05144:intron | 30.0% |
| !!! | TGGTTCGGTTTTTAAAACAT+CGG | - | chr6.4:51264070-51264051 | None:intergenic | 30.0% |
| !!! | TGGTTCGGTTTTTAAAACAT+TGG | + | chr6.4:51264051-51264070 | MS.gene05144:intron | 30.0% |
| AAAACTAGTAAGGCATGGTT+TGG | - | chr6.4:51266354-51266373 | None:intergenic | 35.0% | |
| AAAATACCGCTATAGCATAG+TGG | + | chr6.4:51264922-51264941 | MS.gene05144:intron | 35.0% | |
| AATTGTTGCATCATCTGGTT+CGG | + | chr6.4:51264085-51264104 | MS.gene05144:intron | 35.0% | |
| AGATGATTTCATGTCTGGTT+CGG | - | chr6.4:51263978-51263997 | None:intergenic | 35.0% | |
| AGTCTAGATGATTTCATGTC+TGG | - | chr6.4:51263983-51264002 | None:intergenic | 35.0% | |
| ATATATGAGACTAGGGAGTA+GGG | + | chr6.4:51263656-51263675 | MS.gene05144:intron | 35.0% | |
| ATGTATCTGGTCGTCTATAA+CGG | + | chr6.4:51263585-51263604 | MS.gene05144:intron | 35.0% | |
| CAAATTCCACTATGCTATAG+CGG | - | chr6.4:51264931-51264950 | None:intergenic | 35.0% | |
| CATAAAGTTTCAAAGCCTCA+AGG | - | chr6.4:51265209-51265228 | None:intergenic | 35.0% | |
| CATATTTGCAGCATCTTCTT+TGG | - | chr6.4:51266437-51266456 | None:intergenic | 35.0% | |
| CGTATACCATCACTAAACAA+AGG | + | chr6.4:51265151-51265170 | MS.gene05144:CDS | 35.0% | |
| CTTAATATCTACTTGGTTGC+AGG | + | chr6.4:51265570-51265589 | MS.gene05144:intron | 35.0% | |
| GTTGAAATTGTTGCATCATC+TGG | + | chr6.4:51264080-51264099 | MS.gene05144:intron | 35.0% | |
| TAGCAAATTACGGAAAACAG+TGG | - | chr6.4:51265053-51265072 | None:intergenic | 35.0% | |
| TATATATGAGACTAGGGAGT+AGG | + | chr6.4:51263655-51263674 | MS.gene05144:intron | 35.0% | |
| TATCATACCATGGACATAAG+TGG | - | chr6.4:51266009-51266028 | None:intergenic | 35.0% | |
| TCAAACTCAAAAACATCGTC+AGG | + | chr6.4:51266918-51266937 | MS.gene05144:CDS | 35.0% | |
| TCAAGCAGTTTATCATACCA+TGG | - | chr6.4:51266019-51266038 | None:intergenic | 35.0% | |
| TCACTAAACAAAGGGAGAAA+TGG | + | chr6.4:51265160-51265179 | MS.gene05144:CDS | 35.0% | |
| TCCTTAAGAAATCTGGAAGA+GGG | + | chr6.4:51266950-51266969 | MS.gene05144:CDS | 35.0% | |
| TGAAATGGATGATCTTGAGA+AGG | + | chr6.4:51266564-51266583 | MS.gene05144:CDS | 35.0% | |
| TGTTCTGCATGAAGATTAAG+AGG | - | chr6.4:51265333-51265352 | None:intergenic | 35.0% | |
| TTTGAAGGTAATAGCAAGAG+AGG | + | chr6.4:51266807-51266826 | MS.gene05144:CDS | 35.0% | |
| ! | CAATCATTCTCCTTTTCAAC+AGG | - | chr6.4:51265913-51265932 | None:intergenic | 35.0% |
| ! | CCCTCTTTTACTATGAAAAG+AGG | - | chr6.4:51264519-51264538 | None:intergenic | 35.0% |
| ! | GAACTTTTGATGCTCTTCAT+CGG | - | chr6.4:51265187-51265206 | None:intergenic | 35.0% |
| ! | GCAAAGTGCTTACCTAAATA+AGG | + | chr6.4:51264161-51264180 | MS.gene05144:intron | 35.0% |
| ! | GGACTCATGCAAAAGATTTT+AGG | + | chr6.4:51266070-51266089 | MS.gene05144:intron | 35.0% |
| ! | GGACTTTAAAGGAAAGGATT+TGG | + | chr6.4:51265486-51265505 | MS.gene05144:intron | 35.0% |
| ! | GGAGATGTTTCTGATTCATT+TGG | - | chr6.4:51265727-51265746 | None:intergenic | 35.0% |
| ! | TTTAGCTTATGGTTCATAGG+AGG | + | chr6.4:51266049-51266068 | MS.gene05144:intron | 35.0% |
| ! | TTTCTCCCTTTGTTTAGTGA+TGG | - | chr6.4:51265160-51265179 | None:intergenic | 35.0% |
| !! | CTTGAGGCTTTGAAACTTTA+TGG | + | chr6.4:51265207-51265226 | MS.gene05144:CDS | 35.0% |
| !! | CTTGCTATTACCTTCAAACA+AGG | - | chr6.4:51266805-51266824 | None:intergenic | 35.0% |
| !!! | GAACTTTTTTAGCTTCCCTA+TGG | - | chr6.4:51263829-51263848 | None:intergenic | 35.0% |
| AAAAAAAGTCTCCGGAAGAG+TGG | - | chr6.4:51264496-51264515 | None:intergenic | 40.0% | |
| ACCCTCTTCCAGATTTCTTA+AGG | - | chr6.4:51266954-51266973 | None:intergenic | 40.0% | |
| ACTACAGCACTGTTTCACAA+CGG | + | chr6.4:51265015-51265034 | MS.gene05144:intron | 40.0% | |
| ACTCAAAAACATCGTCAGGA+AGG | + | chr6.4:51266922-51266941 | MS.gene05144:CDS | 40.0% | |
| ATGGATGATCTTGAGAAGGT+TGG | + | chr6.4:51266568-51266587 | MS.gene05144:CDS | 40.0% | |
| CAGAAGGAGAATCCATATGT+CGG | + | chr6.4:51266679-51266698 | MS.gene05144:CDS | 40.0% | |
| CTATTTAACATGCTGCTGCT+TGG | + | chr6.4:51264434-51264453 | MS.gene05144:intron | 40.0% | |
| CTCAAAACCACTTATGTCCA+TGG | + | chr6.4:51265999-51266018 | MS.gene05144:CDS | 40.0% | |
| GGAGTTGTCCTTAAGAAATC+TGG | + | chr6.4:51266943-51266962 | MS.gene05144:CDS | 40.0% | |
| GGTATGTCAATTGGCTGAAT+AGG | - | chr6.4:51265628-51265647 | None:intergenic | 40.0% | |
| GTCCTTAAGAAATCTGGAAG+AGG | + | chr6.4:51266949-51266968 | MS.gene05144:CDS | 40.0% | |
| GTGGAGGATTGAATGTAAGA+TGG | - | chr6.4:51264477-51264496 | None:intergenic | 40.0% | |
| TATATGAGACTAGGGAGTAG+GGG | + | chr6.4:51263657-51263676 | MS.gene05144:intron | 40.0% | |
| TATGTGAGATTTGAACGGGA+CGG | + | chr6.4:51264396-51264415 | MS.gene05144:intron | 40.0% | |
| TGGATGATCTTGAGAAGGTT+GGG | + | chr6.4:51266569-51266588 | MS.gene05144:CDS | 40.0% | |
| TTCTTAATCCTGTGCCTCTT+AGG | + | chr6.4:51266779-51266798 | MS.gene05144:CDS | 40.0% | |
| TTGCTATACAGTCGCTATAG+CGG | + | chr6.4:51264878-51264897 | MS.gene05144:intron | 40.0% | |
| TTTGGTCGAACACTCTCTAT+GGG | + | chr6.4:51266481-51266500 | MS.gene05144:CDS | 40.0% | |
| ! | AGAGCATCAAAAGTTCCTTG+AGG | + | chr6.4:51265191-51265210 | MS.gene05144:CDS | 40.0% |
| ! | ATCATCTAGACTTTGGCTCA+TGG | + | chr6.4:51263991-51264010 | MS.gene05144:intron | 40.0% |
| ! | CATGGTTCAACTGCTTTGAA+AGG | + | chr6.4:51264009-51264028 | MS.gene05144:intron | 40.0% |
| ! | GTCCGAGATTATTTCTTCTG+AGG | + | chr6.4:51266399-51266418 | MS.gene05144:CDS | 40.0% |
| ! | TCGAATCTGAACTGCAGTTT+TGG | - | chr6.4:51265364-51265383 | None:intergenic | 40.0% |
| ! | TTTGATGATTGCATGGCATG+AGG | - | chr6.4:51266759-51266778 | None:intergenic | 40.0% |
| !! | AAAGAGTCAACTGATTTGCG+AGG | - | chr6.4:51265688-51265707 | None:intergenic | 40.0% |
| !! | AAGAGTCAACTGATTTGCGA+GGG | - | chr6.4:51265687-51265706 | None:intergenic | 40.0% |
| !!! | CATAAGTGGTTTTGAGTTGG+TGG | - | chr6.4:51265995-51266014 | None:intergenic | 40.0% |
| !!! | GGACATAAGTGGTTTTGAGT+TGG | - | chr6.4:51265998-51266017 | None:intergenic | 40.0% |
| !!! | GGTTTTGAGTTGGTGGATAA+AGG | - | chr6.4:51265988-51266007 | None:intergenic | 40.0% |
| AACCTCGCTCCAACATTCTA+GGG | - | chr6.4:51264237-51264256 | None:intergenic | 45.0% | |
| ACCTTCAAACAAGGCCTAAG+AGG | - | chr6.4:51266796-51266815 | None:intergenic | 45.0% | |
| AGTGCGCAACTTTACCATTG+TGG | + | chr6.4:51266704-51266723 | MS.gene05144:CDS | 45.0% | |
| ATATGAGACTAGGGAGTAGG+GGG | + | chr6.4:51263658-51263677 | MS.gene05144:intron | 45.0% | |
| ATCTCGGTGGTGCAAGAATT+TGG | - | chr6.4:51265871-51265890 | None:intergenic | 45.0% | |
| CAATTGACATACCTCCTCCT+CGG | + | chr6.4:51265635-51265654 | MS.gene05144:CDS | 45.0% | |
| CACTGAATCAGTCTGCGATA+TGG | + | chr6.4:51266855-51266874 | MS.gene05144:CDS | 45.0% | |
| CATTCAATCCTCCACTCTTC+CGG | + | chr6.4:51264482-51264501 | MS.gene05144:intron | 45.0% | |
| CCATTGTGGAGTTTGTACCA+AGG | + | chr6.4:51266718-51266737 | MS.gene05144:CDS | 45.0% | |
| CCTTGGTACAAACTCCACAA+TGG | - | chr6.4:51266721-51266740 | None:intergenic | 45.0% | |
| GAAGGTAATAGCAAGAGAGG+AGG | + | chr6.4:51266810-51266829 | MS.gene05144:CDS | 45.0% | |
| GAGCATCATGGAACAACAGA+AGG | + | chr6.4:51266663-51266682 | MS.gene05144:CDS | 45.0% | |
| GTAAAACAACCTTGGGAGCA+AGG | - | chr6.4:51264822-51264841 | None:intergenic | 45.0% | |
| GTTTGGTCGAACACTCTCTA+TGG | + | chr6.4:51266480-51266499 | MS.gene05144:CDS | 45.0% | |
| TAACCTCGCTCCAACATTCT+AGG | - | chr6.4:51264238-51264257 | None:intergenic | 45.0% | |
| TCGCAGGATATACCTTCTGT+CGG | + | chr6.4:51264790-51264809 | MS.gene05144:CDS | 45.0% | |
| TGAAAATGATGCGAAGTCGC+AGG | + | chr6.4:51264774-51264793 | MS.gene05144:CDS | 45.0% | |
| TGAGAAGGTTGGGCAAAAAG+AGG | + | chr6.4:51266579-51266598 | MS.gene05144:CDS | 45.0% | |
| TGTACTGTCTGCACTTGGTT+CGG | + | chr6.4:51265795-51265814 | MS.gene05144:CDS | 45.0% | |
| TTCAGACTGTGATCCACCTT+TGG | - | chr6.4:51264758-51264777 | None:intergenic | 45.0% | |
| TTCGTTGTCCCCTAGAATGT+TGG | + | chr6.4:51264225-51264244 | MS.gene05144:intron | 45.0% | |
| ! | ACTGTGATCCACCTTTGGAA+TGG | - | chr6.4:51264753-51264772 | None:intergenic | 45.0% |
| ! | AGTAAGTGCCATTCCAAAGG+TGG | + | chr6.4:51264742-51264761 | MS.gene05144:CDS | 45.0% |
| ! | ATTCTAGGGGACAACGAACA+AGG | - | chr6.4:51264223-51264242 | None:intergenic | 45.0% |
| ! | ATTTGCGAGGGTATGGATGA+AGG | - | chr6.4:51265675-51265694 | None:intergenic | 45.0% |
| ! | GAGTAGGGGGAGTTTCTTTT+TGG | + | chr6.4:51263671-51263690 | MS.gene05144:intron | 45.0% |
| ! | GGTAGTAAGTGCCATTCCAA+AGG | + | chr6.4:51264739-51264758 | MS.gene05144:CDS | 45.0% |
| ! | GTTCAAGGCACTAAGTCAAC+TGG | + | chr6.4:51264712-51264731 | MS.gene05144:CDS | 45.0% |
| ! | TTTGCGAGGGTATGGATGAA+GGG | - | chr6.4:51265674-51265693 | None:intergenic | 45.0% |
| !! | GCTTTGAAACTTTATGGCCG+TGG | + | chr6.4:51265213-51265232 | MS.gene05144:CDS | 45.0% |
| !! | TCAACTGATTTGCGAGGGTA+TGG | - | chr6.4:51265682-51265701 | None:intergenic | 45.0% |
| AAAAGTCTCCGGAAGAGTGG+AGG | - | chr6.4:51264493-51264512 | None:intergenic | 50.0% | |
| ACAGTACAGAGGTAGGCGAT+TGG | - | chr6.4:51265783-51265802 | None:intergenic | 50.0% | |
| ACCAAGTGCAGACAGTACAG+AGG | - | chr6.4:51265794-51265813 | None:intergenic | 50.0% | |
| ACCTCGCTCCAACATTCTAG+GGG | - | chr6.4:51264236-51264255 | None:intergenic | 50.0% | |
| ACCTCTGTACTGTCTGCACT+TGG | + | chr6.4:51265790-51265809 | MS.gene05144:CDS | 50.0% | |
| ACGGGACGGCAATTAAGCTT+AGG | + | chr6.4:51264410-51264429 | MS.gene05144:intron | 50.0% | |
| AGTGCAGACAGTACAGAGGT+AGG | - | chr6.4:51265790-51265809 | None:intergenic | 50.0% | |
| ATGCTCACTTGAGCTCCATC+AGG | - | chr6.4:51266649-51266668 | None:intergenic | 50.0% | |
| CAGCTTGTCGCCTGTTGAAA+AGG | + | chr6.4:51265900-51265919 | MS.gene05144:CDS | 50.0% | |
| CAGTACAGAGGTAGGCGATT+GGG | - | chr6.4:51265782-51265801 | None:intergenic | 50.0% | |
| CCAGACATCCAAACCATCTG+AGG | + | chr6.4:51265933-51265952 | MS.gene05144:CDS | 50.0% | |
| CCATCTGAGGAGGAAGAGAA+AGG | + | chr6.4:51265946-51265965 | MS.gene05144:CDS | 50.0% | |
| CCTTTCTCTTCCTCCTCAGA+TGG | - | chr6.4:51265949-51265968 | None:intergenic | 50.0% | |
| CTACTTGGTTGCAGGTTGTG+CGG | + | chr6.4:51265578-51265597 | MS.gene05144:intron | 50.0% | |
| CTAGGCATGTGTACACCTGA+TGG | + | chr6.4:51266631-51266650 | MS.gene05144:CDS | 50.0% | |
| CTCTGCAACTGACAGGTTAG+TGG | - | chr6.4:51265752-51265771 | None:intergenic | 50.0% | |
| CTCTTCCTCCTCAGATGGTT+TGG | - | chr6.4:51265944-51265963 | None:intergenic | 50.0% | |
| CTTCAATTTGACGCCAGCCA+CGG | - | chr6.4:51265233-51265252 | None:intergenic | 50.0% | |
| GACATCCAAACCATCTGAGG+AGG | + | chr6.4:51265936-51265955 | MS.gene05144:CDS | 50.0% | |
| GAGGAGGAAAGTTCTTGCAC+TGG | + | chr6.4:51266826-51266845 | MS.gene05144:CDS | 50.0% | |
| GATGATTGCATGGCATGAGG+TGG | - | chr6.4:51266756-51266775 | None:intergenic | 50.0% | |
| GCAACTGACAGGTTAGTGGA+TGG | - | chr6.4:51265748-51265767 | None:intergenic | 50.0% | |
| GGATGAAGGGGTTTCCTCTT+CGG | - | chr6.4:51265661-51265680 | None:intergenic | 50.0% | |
| GGCACTAAGTCAACTGGAAC+AGG | + | chr6.4:51264718-51264737 | MS.gene05144:CDS | 50.0% | |
| TACTTGGTTGCAGGTTGTGC+GGG | + | chr6.4:51265579-51265598 | MS.gene05144:intron | 50.0% | |
| TGAAACTTTATGGCCGTGGC+TGG | + | chr6.4:51265217-51265236 | MS.gene05144:CDS | 50.0% | |
| TGGAGCTCAAGTGAGCATCA+TGG | + | chr6.4:51266651-51266670 | MS.gene05144:CDS | 50.0% | |
| TGTCGTTCTCTGCAACTGAC+AGG | - | chr6.4:51265759-51265778 | None:intergenic | 50.0% | |
| ! | AAACAAGGCCTAAGAGGCAC+AGG | - | chr6.4:51266790-51266809 | None:intergenic | 50.0% |
| ! | CCTCAGATGGTTTGGATGTC+TGG | - | chr6.4:51265936-51265955 | None:intergenic | 50.0% |
| ! | CGAGGAGGAGGTATGTCAAT+TGG | - | chr6.4:51265637-51265656 | None:intergenic | 50.0% |
| ! | GCAAGGTTGTTTCCGACAGA+AGG | - | chr6.4:51264805-51264824 | None:intergenic | 50.0% |
| ! | TTGCGAGGGTATGGATGAAG+GGG | - | chr6.4:51265673-51265692 | None:intergenic | 50.0% |
| !! | GCACTTGGTTCGGAAGCATT+TGG | + | chr6.4:51265805-51265824 | MS.gene05144:CDS | 50.0% |
| !! | GCCTCTTAGGCCTTGTTTGA+AGG | + | chr6.4:51266792-51266811 | MS.gene05144:CDS | 50.0% |
| !! | GCTGGCTTGGAAGAAAGAGA+GGG | + | chr6.4:51267024-51267043 | MS.gene05144:CDS | 50.0% |
| !! | TGCTGGCTTGGAAGAAAGAG+AGG | + | chr6.4:51267023-51267042 | MS.gene05144:CDS | 50.0% |
| CAAGCTGACCGGGTGAATCT+CGG | - | chr6.4:51265887-51265906 | None:intergenic | 55.0% | |
| CATGGCATGAGGTGGAAAGC+TGG | - | chr6.4:51266748-51266767 | None:intergenic | 55.0% | |
| CGGAAACAACCTTGCTCCCA+AGG | + | chr6.4:51264810-51264829 | MS.gene05144:CDS | 55.0% | |
| CGTGGCTGGCGTCAAATTGA+AGG | + | chr6.4:51265231-51265250 | MS.gene05144:CDS | 55.0% | |
| GCATGAGGTGGAAAGCTGGA+AGG | - | chr6.4:51266744-51266763 | None:intergenic | 55.0% | |
| GGACTTTCAGCACTGCCATC+AGG | - | chr6.4:51265607-51265626 | None:intergenic | 55.0% | |
| TCAACAGGCGACAAGCTGAC+CGG | - | chr6.4:51265898-51265917 | None:intergenic | 55.0% | |
| TCCCCTAGAATGTTGGAGCG+AGG | + | chr6.4:51264232-51264251 | MS.gene05144:intron | 55.0% | |
| TTGCACCACCGAGATTCACC+CGG | + | chr6.4:51265876-51265895 | MS.gene05144:CDS | 55.0% | |
| ! | GCTGCTGCTTGGTATGAAGC+AGG | + | chr6.4:51264445-51264464 | MS.gene05144:intron | 55.0% |
| CAACAGGCGACAAGCTGACC+GGG | - | chr6.4:51265897-51265916 | None:intergenic | 60.0% | |
| CAGGTTGTGCGGGAACCTGA+TGG | + | chr6.4:51265589-51265608 | MS.gene05144:intron | 60.0% | |
| GGTGGAAAGCTGGAAGGCCT+TGG | - | chr6.4:51266738-51266757 | None:intergenic | 60.0% | |
| GTTGCGCACTCGCCGACATA+TGG | - | chr6.4:51266694-51266713 | None:intergenic | 60.0% | |
| AGGGGTTTCCTCTTCGGCCG+AGG | - | chr6.4:51265655-51265674 | None:intergenic | 65.0% | |
| GCTGACCGGGTGAATCTCGG+TGG | - | chr6.4:51265884-51265903 | None:intergenic | 65.0% | |
| GGTTTCCTCTTCGGCCGAGG+AGG | - | chr6.4:51265652-51265671 | None:intergenic | 65.0% | |
| TACCTCCTCCTCGGCCGAAG+AGG | + | chr6.4:51265644-51265663 | MS.gene05144:CDS | 65.0% | |
| TTCCTCTTCGGCCGAGGAGG+AGG | - | chr6.4:51265649-51265668 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 51263416 | 51267071 | 51263416 | ID=MS.gene05144 |
| chr6.4 | mRNA | 51263416 | 51267071 | 51263416 | ID=MS.gene05144.t1;Parent=MS.gene05144 |
| chr6.4 | exon | 51263416 | 51263427 | 51263416 | ID=MS.gene05144.t1.exon1;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51263416 | 51263427 | 51263416 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| chr6.4 | exon | 51264706 | 51264831 | 51264706 | ID=MS.gene05144.t1.exon2;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51264706 | 51264831 | 51264706 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| chr6.4 | exon | 51265141 | 51265252 | 51265141 | ID=MS.gene05144.t1.exon3;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51265141 | 51265252 | 51265141 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| chr6.4 | exon | 51265349 | 51265410 | 51265349 | ID=MS.gene05144.t1.exon4;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51265349 | 51265410 | 51265349 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| chr6.4 | exon | 51265592 | 51266020 | 51265592 | ID=MS.gene05144.t1.exon5;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51265592 | 51266020 | 51265592 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| chr6.4 | exon | 51266397 | 51267071 | 51266397 | ID=MS.gene05144.t1.exon6;Parent=MS.gene05144.t1 |
| chr6.4 | CDS | 51266397 | 51267071 | 51266397 | ID=cds.MS.gene05144.t1;Parent=MS.gene05144.t1 |
| Gene Sequence |
| Protein sequence |
