AlfalfaGEDB | MS.gene79881

M. sativa cultivar XinJiangDaYe / MS.gene79881

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79881.t1	KEH35241.1	94.1	102	6	0	1	102	1	102	2.60E-45	191

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79881.t1	Q9LIS2	62.7	102	36	2	1	101	1	101	2.5e-28	125.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79881.t1	A0A072V0K5	94.1	102	6	0	1	102	1	102	1.9e-45	191.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050427	MS.gene79881	0.812469	4.17E-51	-1.69E-46
MS.gene051329	MS.gene79881	0.862821	3.86E-64	-1.69E-46
MS.gene05144	MS.gene79881	-0.82266	2.10E-53	-1.69E-46
MS.gene052224	MS.gene79881	-0.82834	9.49E-55	-1.69E-46
MS.gene053401	MS.gene79881	0.840132	1.05E-57	-1.69E-46
MS.gene056091	MS.gene79881	0.822534	2.25E-53	-1.69E-46
MS.gene058030	MS.gene79881	0.839049	2.00E-57	-1.69E-46
MS.gene059935	MS.gene79881	0.800402	1.47E-48	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene063816	MS.gene79881	PPI
MS.gene88428	MS.gene79881	PPI
MS.gene79881	MS.gene016534	PPI
MS.gene87189	MS.gene79881	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79881.t1	MTR_3g084040	94.118	102	6	0	1	102	1	102	1.68e-68	200
MS.gene79881.t1	MTR_3g084040	94.059	101	6	0	1	101	1	101	3.36e-67	198
MS.gene79881.t1	MTR_4g109540	51.852	108	45	3	1	101	1	108	5.94e-30	107
MS.gene79881.t1	MTR_7g013730	46.847	111	49	2	1	101	1	111	7.56e-28	102
MS.gene79881.t1	MTR_4g109540	48.276	116	45	4	1	101	1	116	2.90e-27	100
MS.gene79881.t1	MTR_7g013740	46.296	108	49	3	1	101	1	106	3.00e-27	97.8
MS.gene79881.t1	MTR_3g025880	45.370	108	50	3	1	99	1	108	3.35e-24	95.1
MS.gene79881.t1	MTR_3g080130	54.412	68	30	1	36	102	36	103	4.72e-23	86.7
MS.gene79881.t1	MTR_7g105260	49.315	73	37	0	23	95	19	91	1.74e-20	80.1
MS.gene79881.t1	MTR_4g070080	48.485	66	33	1	37	101	7	72	8.62e-20	78.2
MS.gene79881.t1	MTR_4g070080	48.485	66	33	1	37	101	7	72	1.80e-19	78.2
MS.gene79881.t1	MTR_4g063560	42.045	88	50	1	15	101	12	99	2.36e-19	76.6
MS.gene79881.t1	MTR_3g014000	43.617	94	47	2	1	94	1	88	2.52e-19	77.0
MS.gene79881.t1	MTR_4g070190	46.970	66	34	1	37	101	9	74	2.81e-18	75.1
MS.gene79881.t1	MTR_4g070140	48.485	66	33	1	37	101	9	74	6.96e-18	74.7
MS.gene79881.t1	MTR_7g099940	43.299	97	46	3	1	93	1	92	3.32e-17	71.6
MS.gene79881.t1	MTR_3g055990	49.275	69	31	1	37	101	7	75	2.89e-15	70.1
MS.gene79881.t1	MTR_3g055990	49.275	69	31	1	37	101	7	75	3.31e-15	69.7
MS.gene79881.t1	MTR_1g092860	37.647	85	52	1	18	101	174	258	3.74e-15	68.9
MS.gene79881.t1	MTR_4g081520	46.269	67	35	1	34	99	49	115	7.02e-15	65.9
MS.gene79881.t1	MTR_3g075500	42.424	66	37	1	37	101	207	272	2.96e-14	66.6
MS.gene79881.t1	MTR_5g097580	58.000	50	21	0	35	84	5	54	5.29e-14	66.2
MS.gene79881.t1	MTR_5g097580	58.000	50	21	0	35	84	5	54	5.69e-14	66.2
MS.gene79881.t1	MTR_4g035310	40.299	67	39	1	36	102	16	81	8.69e-14	65.1
MS.gene79881.t1	MTR_4g035310	40.299	67	39	1	36	102	16	81	9.15e-14	65.1
MS.gene79881.t1	MTR_8g024520	46.552	58	31	0	36	93	25	82	1.02e-13	65.1
MS.gene79881.t1	MTR_8g024520	46.552	58	31	0	36	93	25	82	1.04e-13	65.1
MS.gene79881.t1	MTR_3g075500	42.188	64	36	1	37	99	207	270	1.07e-13	64.7
MS.gene79881.t1	MTR_3g116130	41.667	60	35	0	36	95	29	88	1.47e-13	64.7
MS.gene79881.t1	MTR_7g117495	43.103	58	33	0	36	93	18	75	1.90e-13	63.9
MS.gene79881.t1	MTR_3g092490	46.552	58	31	0	36	93	26	83	1.92e-13	62.8
MS.gene79881.t1	MTR_7g117495	43.103	58	33	0	36	93	18	75	1.99e-13	63.9
MS.gene79881.t1	MTR_3g029580	35.294	85	51	3	18	99	13	96	2.43e-13	61.6
MS.gene79881.t1	MTR_4g104470	44.615	65	35	1	37	100	217	281	2.77e-13	63.9
MS.gene79881.t1	MTR_3g116130	43.103	58	33	0	36	93	29	86	2.97e-13	64.3
MS.gene79881.t1	MTR_3g029580	35.294	85	51	3	18	99	13	96	4.03e-13	61.2
MS.gene79881.t1	MTR_5g064120	38.806	67	40	1	36	102	16	81	5.74e-13	63.2
MS.gene79881.t1	MTR_3g092490	46.552	58	31	0	36	93	26	83	6.28e-13	62.8
MS.gene79881.t1	MTR_3g092490	46.552	58	31	0	36	93	26	83	6.42e-13	62.4
MS.gene79881.t1	MTR_6g004810	45.161	62	34	0	35	96	132	193	1.00e-12	62.8
MS.gene79881.t1	MTR_1g064230	45.312	64	34	1	36	98	196	259	1.00e-12	62.4
MS.gene79881.t1	MTR_2g026180	42.466	73	38	1	33	101	1	73	1.28e-12	62.4
MS.gene79881.t1	MTR_1g045510	45.000	60	33	0	37	96	205	264	7.34e-12	60.1
MS.gene79881.t1	MTR_4g124940	46.552	58	31	0	38	95	133	190	1.07e-11	59.7
MS.gene79881.t1	MTR_8g022050	48.276	58	30	0	38	95	149	206	1.47e-11	59.3
MS.gene79881.t1	MTR_2g096560	40.278	72	37	2	36	101	7	78	1.59e-11	55.8
MS.gene79881.t1	MTR_8g463890	46.774	62	33	0	33	94	70	131	1.94e-11	58.9
MS.gene79881.t1	MTR_4g081510	41.270	63	36	1	38	99	46	108	1.96e-11	57.8
MS.gene79881.t1	MTR_3g065190	43.939	66	35	2	36	99	112	177	2.13e-11	58.9
MS.gene79881.t1	MTR_1g073690	46.939	49	26	0	37	85	7	55	2.18e-11	58.9
MS.gene79881.t1	MTR_6g477870	32.308	65	43	1	36	99	95	159	2.81e-11	57.0
MS.gene79881.t1	MTR_1g097280	39.286	56	34	0	38	93	31	86	3.44e-11	58.5
MS.gene79881.t1	MTR_7g106440	42.029	69	39	1	34	101	210	278	3.52e-11	58.2
MS.gene79881.t1	MTR_6g477870	32.308	65	43	1	36	99	95	159	3.92e-11	57.0
MS.gene79881.t1	MTR_5g017280	42.857	63	36	0	33	95	1	63	6.52e-11	57.4
MS.gene79881.t1	MTR_5g017280	42.857	63	36	0	33	95	1	63	6.76e-11	57.4
MS.gene79881.t1	MTR_4g074930	41.096	73	42	1	30	102	358	429	7.34e-11	57.4
MS.gene79881.t1	MTR_4g074930	41.096	73	42	1	30	102	370	441	7.35e-11	57.4
MS.gene79881.t1	MTR_1g019150	37.349	83	47	1	19	96	10	92	8.12e-11	57.4
MS.gene79881.t1	MTR_4g074930	41.096	73	42	1	30	102	323	394	8.37e-11	57.4
MS.gene79881.t1	MTR_4g074930	41.096	73	42	1	30	102	335	406	8.39e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79881.t1	AT3G23830	62.745	102	36	2	1	101	1	101	1.83e-41	133
MS.gene79881.t1	AT3G23830	62.745	102	36	2	1	101	1	101	1.83e-41	133
MS.gene79881.t1	AT4G13850	61.765	102	37	2	1	101	1	101	1.59e-39	128
MS.gene79881.t1	AT4G13850	61.765	102	37	2	1	101	1	101	2.41e-39	128
MS.gene79881.t1	AT4G13850	61.765	102	37	2	1	101	1	101	3.14e-39	128
MS.gene79881.t1	AT4G13850	61.765	102	37	2	1	101	1	101	3.63e-39	128
MS.gene79881.t1	AT5G61030	55.660	106	42	2	1	101	1	106	1.37e-32	115
MS.gene79881.t1	AT5G61030	55.660	106	42	2	1	101	1	106	1.37e-32	115
MS.gene79881.t1	AT5G47320	57.843	102	37	3	1	101	1	97	2.05e-32	112
MS.gene79881.t1	AT1G74230	53.465	101	45	1	1	101	1	99	4.52e-31	111
MS.gene79881.t1	AT3G08000	46.078	102	47	2	9	102	7	108	1.34e-22	85.9
MS.gene79881.t1	AT2G21660	46.970	66	34	1	37	101	9	74	4.81e-18	74.3
MS.gene79881.t1	AT2G21660	46.970	66	34	1	37	101	9	74	6.91e-18	74.3
MS.gene79881.t1	AT1G18630	42.105	95	50	2	1	94	4	94	7.55e-18	73.9
MS.gene79881.t1	AT2G37510	50.820	61	30	0	33	93	31	91	2.96e-17	72.0
MS.gene79881.t1	AT5G06210	48.611	72	36	1	31	101	29	100	1.56e-16	70.1
MS.gene79881.t1	AT2G37220	50.000	64	31	1	36	98	204	267	1.12e-15	70.5
MS.gene79881.t1	AT3G46020	47.059	68	35	1	35	101	6	73	1.12e-15	67.0
MS.gene79881.t1	AT4G39260	39.394	66	39	1	37	101	7	72	2.01e-15	65.9
MS.gene79881.t1	AT3G53460	44.444	72	34	1	36	101	278	349	2.69e-15	70.1
MS.gene79881.t1	AT3G53460	44.444	72	34	1	36	101	257	328	2.85e-15	69.7
MS.gene79881.t1	AT3G53460	44.444	72	34	1	36	101	257	328	2.85e-15	69.7
MS.gene79881.t1	AT3G53460	44.444	72	34	1	36	101	257	328	2.85e-15	69.7
MS.gene79881.t1	AT4G39260	39.394	66	39	1	37	101	7	72	3.07e-15	66.2
MS.gene79881.t1	AT5G59865	52.941	51	24	0	34	84	24	74	3.97e-15	65.9
MS.gene79881.t1	AT4G39260	40.678	59	35	0	37	95	7	65	4.78e-15	65.5
MS.gene79881.t1	AT1G76460	45.000	60	33	0	36	95	24	83	6.58e-15	68.6
MS.gene79881.t1	AT4G39260	39.394	66	39	1	37	101	7	72	7.59e-15	66.2
MS.gene79881.t1	AT5G50250	43.939	66	36	1	37	101	208	273	1.12e-14	67.8
MS.gene79881.t1	AT5G55550	47.143	70	33	1	37	102	7	76	1.18e-14	68.2
MS.gene79881.t1	AT5G55550	47.143	70	33	1	37	102	7	76	1.21e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.39e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.39e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.39e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.39e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.40e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.40e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.40e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.40e-14	68.2
MS.gene79881.t1	AT5G55550	47.826	69	32	1	37	101	7	75	1.40e-14	68.2
MS.gene79881.t1	AT1G22910	43.284	67	37	1	36	102	13	78	2.02e-14	66.6
MS.gene79881.t1	AT3G13224	48.529	68	35	0	28	95	101	168	2.14e-14	66.2
MS.gene79881.t1	AT1G20880	46.552	58	31	0	36	93	24	81	2.17e-14	67.0
MS.gene79881.t1	AT1G20880	46.552	58	31	0	36	93	24	81	2.17e-14	67.0
MS.gene79881.t1	AT1G20880	46.552	58	31	0	36	93	24	81	2.17e-14	67.0
MS.gene79881.t1	AT1G22910	43.284	67	37	1	36	102	13	78	2.30e-14	66.6
MS.gene79881.t1	AT4G24770	45.455	66	35	1	37	101	245	310	2.60e-14	67.0
MS.gene79881.t1	AT4G24770	45.455	66	35	1	37	101	245	310	2.60e-14	67.0
MS.gene79881.t1	AT1G33470	43.284	67	37	1	36	102	7	72	2.98e-14	66.2
MS.gene79881.t1	AT1G33470	43.284	67	37	1	36	102	7	72	3.13e-14	66.2
MS.gene79881.t1	AT1G33470	43.284	67	37	1	36	102	7	72	3.36e-14	65.9
MS.gene79881.t1	AT1G22910	43.284	67	37	1	36	102	13	78	3.37e-14	67.0
MS.gene79881.t1	AT5G47620	50.847	59	29	0	32	90	2	60	3.52e-14	67.0
MS.gene79881.t1	AT5G47620	51.724	58	28	0	33	90	3	60	3.94e-14	66.6
MS.gene79881.t1	AT5G47620	51.724	58	28	0	33	90	3	60	3.94e-14	66.6
MS.gene79881.t1	AT5G47620	51.724	58	28	0	33	90	3	60	3.94e-14	66.6
MS.gene79881.t1	AT3G07810	45.070	71	35	1	35	101	5	75	4.39e-14	66.6
MS.gene79881.t1	AT3G07810	45.070	71	35	1	35	101	5	75	4.47e-14	66.6
MS.gene79881.t1	AT2G46780	46.552	58	31	0	36	93	22	79	5.32e-14	66.2
MS.gene79881.t1	AT2G46780	46.552	58	31	0	36	93	22	79	5.32e-14	66.2
MS.gene79881.t1	AT3G26420	40.278	72	37	1	37	102	8	79	6.73e-14	65.1
MS.gene79881.t1	AT2G21690	46.429	56	30	0	39	94	10	65	7.49e-14	62.8
MS.gene79881.t1	AT1G60000	50.000	70	34	1	30	98	171	240	7.74e-14	65.1
MS.gene79881.t1	AT3G13224	45.946	74	40	0	22	95	95	168	8.15e-14	65.9
MS.gene79881.t1	AT5G54580	46.269	67	35	1	34	99	54	120	9.69e-14	63.2
MS.gene79881.t1	AT1G78260	40.299	67	39	1	36	102	17	82	1.02e-13	65.1
MS.gene79881.t1	AT3G13224	48.529	68	35	0	28	95	92	159	1.06e-13	65.5
MS.gene79881.t1	AT1G78260	40.299	67	39	1	36	102	17	82	1.10e-13	65.1
MS.gene79881.t1	AT3G20930	40.000	70	41	1	33	101	279	348	1.34e-13	65.1
MS.gene79881.t1	AT4G13860	45.588	68	36	1	35	101	2	69	1.36e-13	61.2
MS.gene79881.t1	AT1G60650	41.176	68	39	1	35	101	11	78	2.29e-13	64.3
MS.gene79881.t1	AT1G60650	41.176	68	39	1	35	101	11	78	2.29e-13	64.3
MS.gene79881.t1	AT2G22100	43.750	64	36	0	31	94	158	221	3.85e-13	63.9
MS.gene79881.t1	AT3G52380	47.826	69	35	1	34	101	217	285	4.72e-13	63.5
MS.gene79881.t1	AT4G26650	43.478	69	35	1	37	101	13	81	5.71e-13	63.5
MS.gene79881.t1	AT4G26650	43.478	69	35	1	37	101	16	84	5.89e-13	63.5
MS.gene79881.t1	AT1G22330	40.299	67	39	1	36	102	17	82	7.19e-13	62.8
MS.gene79881.t1	AT4G14300	55.102	49	22	0	37	85	7	55	1.46e-12	62.4
MS.gene79881.t1	AT4G14300	55.102	49	22	0	37	85	7	55	1.46e-12	62.4
MS.gene79881.t1	AT5G11412	39.655	58	35	0	36	93	52	109	1.65e-12	60.5
MS.gene79881.t1	AT1G54080	44.615	65	35	1	38	101	150	214	2.53e-12	61.6
MS.gene79881.t1	AT1G01080	32.955	88	59	0	11	98	187	274	3.50e-12	60.8
MS.gene79881.t1	AT1G17640	42.424	66	37	1	34	99	155	219	4.26e-12	60.8
MS.gene79881.t1	AT1G17640	42.424	66	37	1	34	99	155	219	4.26e-12	60.8
MS.gene79881.t1	AT1G17640	42.424	66	37	1	34	99	155	219	4.26e-12	60.8
MS.gene79881.t1	AT2G19380	32.558	86	58	0	9	94	381	466	4.70e-12	60.8
MS.gene79881.t1	AT1G01080	32.955	88	59	0	11	98	188	275	4.72e-12	60.5
MS.gene79881.t1	AT3G54770	41.379	58	34	0	36	93	17	74	5.02e-12	60.5
MS.gene79881.t1	AT1G01080	32.955	88	59	0	11	98	187	274	5.14e-12	60.5
MS.gene79881.t1	AT5G53680	36.364	66	42	0	36	101	13	78	5.27e-12	58.9
MS.gene79881.t1	AT3G54770	41.379	58	34	0	36	93	17	74	5.43e-12	60.1
MS.gene79881.t1	AT5G40490	42.623	61	35	0	35	95	112	172	6.58e-12	60.5
MS.gene79881.t1	AT5G04280	40.678	59	35	0	36	94	7	65	1.19e-11	59.7
MS.gene79881.t1	AT2G37510	36.047	86	30	1	33	93	31	116	1.20e-11	58.2
MS.gene79881.t1	AT5G40490	46.296	54	29	0	35	88	129	182	1.96e-11	59.3
MS.gene79881.t1	AT3G20930	37.333	75	41	2	33	101	279	353	2.12e-11	58.9
MS.gene79881.t1	AT5G53720	38.889	72	39	1	35	101	8	79	2.81e-11	55.5
MS.gene79881.t1	AT2G27330	37.838	74	40	1	35	102	20	93	3.02e-11	55.8
MS.gene79881.t1	AT3G14100	42.857	63	35	1	38	99	146	208	3.35e-11	58.5
MS.gene79881.t1	AT2G33410	48.980	49	25	0	37	85	7	55	4.40e-11	58.2
MS.gene79881.t1	AT4G36960	44.828	58	32	0	37	94	4	61	7.71e-11	57.4
MS.gene79881.t1	AT4G36960	44.828	58	32	0	37	94	4	61	7.71e-11	57.4

Find 26 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTGGAAGATCAAGGGGATT+TGG	0.334462	3.1:-65560978	MS.gene79881:CDS
ATGGCTTTCTGTAACAAGAT+TGG	0.370753	3.1:-65561659	MS.gene79881:CDS
TGTTGATGACCAGTCTCTTA+AGG	0.428494	3.1:-65561441	MS.gene79881:CDS
TAGTTAAGCATGGATGAAAC+AGG	0.461015	3.1:+65561596	None:intergenic
AGCACTCTCCATGGATGGAC+AGG	0.490812	3.1:-65560919	MS.gene79881:intron
ATAGAGACACTGGAAGATCA+AGG	0.517492	3.1:-65560986	MS.gene79881:CDS
TAAATGCATCCTTAAGAGAC+TGG	0.532048	3.1:+65561432	None:intergenic
AAGGATGCATTTACAACCTA+CGG	0.532917	3.1:-65561422	MS.gene79881:CDS
GGTCATCAACATGGTAAGAA+AGG	0.538171	3.1:+65561453	None:intergenic
TATTACAACCTGTCCATCCA+TGG	0.550532	3.1:+65560911	None:intergenic
TGAAGTTGCAGACTCTTCAC+TGG	0.556568	3.1:+65560941	None:intergenic
TGCAACTTCAGCACTCTCCA+TGG	0.559718	3.1:-65560928	MS.gene79881:CDS
AACCTACGGAGAAGTGGTTG+AGG	0.563954	3.1:-65561408	MS.gene79881:CDS
ACTTCAGCACTCTCCATGGA+TGG	0.565520	3.1:-65560924	MS.gene79881:CDS
GAGTAGCACCTTGCCTCAAG+AGG	0.579009	3.1:+65561633	None:intergenic
GTTATCACTGATAGAGACAC+TGG	0.581409	3.1:-65560996	MS.gene79881:CDS
TAGAGACACTGGAAGATCAA+GGG	0.594765	3.1:-65560985	MS.gene79881:CDS
ACCTACGGAGAAGTGGTTGA+GGG	0.603405	3.1:-65561407	MS.gene79881:intron
AGAGACACTGGAAGATCAAG+GGG	0.604078	3.1:-65560984	MS.gene79881:CDS
ATTTACAACCTACGGAGAAG+TGG	0.607456	3.1:-65561414	MS.gene79881:CDS
GTGGCGCAAGTAGTTAAGCA+TGG	0.622132	3.1:+65561586	None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG	0.631105	3.1:-65561641	MS.gene79881:CDS
TAAGAGACTGGTCATCAACA+TGG	0.631495	3.1:+65561444	None:intergenic
ACAAGATTGGAAACCTCTTG+AGG	0.658250	3.1:-65561646	MS.gene79881:CDS
ACCCTCAACCACTTCTCCGT+AGG	0.658961	3.1:+65561406	None:intergenic
AAAGCTTGCTTGAAGACATG+TGG	0.718559	3.1:+65561567	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTTTTATAATAAATAACTT+TGG	-	chr3.1:65561478-65561497	MS.gene79881:intron	10.0%
!!	ATAAAATGTATGGTTATCAT+AGG	-	chr3.1:65561040-65561059	MS.gene79881:intron	20.0%
!!	GAATGTTAGAAGTTAAATTT+GGG	-	chr3.1:65561229-65561248	MS.gene79881:intron	20.0%
!!!	ATTCTAATTGTCATTTTAGT+CGG	-	chr3.1:65561651-65561670	MS.gene79881:CDS	20.0%
!!!	TTTATCTAGTTTTTTTATGC+TGG	-	chr3.1:65560994-65561013	MS.gene79881:CDS	20.0%
!	AGTGTTATGTTGATACAAAA+GGG	+	chr3.1:65561197-65561216	None:intergenic	25.0%
!	GCTGGTTAGTATTATTATTA+TGG	-	chr3.1:65561012-65561031	MS.gene79881:intron	25.0%
!	GGAATGTTAGAAGTTAAATT+TGG	-	chr3.1:65561228-65561247	MS.gene79881:intron	25.0%
!!	TTGATACATTAAAGTGTCTT+TGG	-	chr3.1:65561402-65561421	MS.gene79881:intron	25.0%
!!!	TATGGCTCTAATAAAATGTA+TGG	-	chr3.1:65561030-65561049	MS.gene79881:intron	25.0%
	CACTTTAATGTATCAACTAC+CGG	+	chr3.1:65561398-65561417	None:intergenic	30.0%
	CAGTGTTATGTTGATACAAA+AGG	+	chr3.1:65561198-65561217	None:intergenic	30.0%
	GTGTTATGTTGATACAAAAG+GGG	+	chr3.1:65561196-65561215	None:intergenic	30.0%
	TGAAGAGTAAGTCAAATTTC+CGG	-	chr3.1:65561376-65561395	MS.gene79881:intron	30.0%
!!	TTTCATTGGAGGTATTGATT+TGG	-	chr3.1:65560970-65560989	MS.gene79881:CDS	30.0%
	AAGGATGCATTTACAACCTA+CGG	-	chr3.1:65561094-65561113	MS.gene79881:intron	35.0%
	ATGGCTTTCTGTAACAAGAT+TGG	-	chr3.1:65560857-65560876	MS.gene79881:intron	35.0%
	TAAATGCATCCTTAAGAGAC+TGG	+	chr3.1:65561087-65561106	None:intergenic	35.0%
	TAGTTAAGCATGGATGAAAC+AGG	+	chr3.1:65560923-65560942	None:intergenic	35.0%
!	ACATAACACTGCATTGACAT+TGG	-	chr3.1:65561207-65561226	MS.gene79881:intron	35.0%
!	TCTTCAAGCAAGCTTTTCAT+TGG	-	chr3.1:65560956-65560975	MS.gene79881:CDS	35.0%
!!	GCATCTGCTTTGTTTGATTA+TGG	-	chr3.1:65561454-65561473	MS.gene79881:CDS	35.0%
	ACAAGATTGGAAACCTCTTG+AGG	-	chr3.1:65560870-65560889	MS.gene79881:intron	40.0%
	ATAGAGACACTGGAAGATCA+AGG	-	chr3.1:65561530-65561549	MS.gene79881:intron	40.0%
	ATTTACAACCTACGGAGAAG+TGG	-	chr3.1:65561102-65561121	MS.gene79881:intron	40.0%
	CTGAAGAACACATTTCAGTG+GGG	-	chr3.1:65561268-65561287	MS.gene79881:intron	40.0%
	GCTGAAGAACACATTTCAGT+GGG	-	chr3.1:65561267-65561286	MS.gene79881:intron	40.0%
	GGTCATCAACATGGTAAGAA+AGG	+	chr3.1:65561066-65561085	None:intergenic	40.0%
	GTTATCACTGATAGAGACAC+TGG	-	chr3.1:65561520-65561539	MS.gene79881:intron	40.0%
	TAGAGACACTGGAAGATCAA+GGG	-	chr3.1:65561531-65561550	MS.gene79881:intron	40.0%
	TATTACAACCTGTCCATCCA+TGG	+	chr3.1:65561608-65561627	None:intergenic	40.0%
	TGCTGAAGAACACATTTCAG+TGG	-	chr3.1:65561266-65561285	MS.gene79881:intron	40.0%
!	AAAGCTTGCTTGAAGACATG+TGG	+	chr3.1:65560952-65560971	None:intergenic	40.0%
!	TAAGAGACTGGTCATCAACA+TGG	+	chr3.1:65561075-65561094	None:intergenic	40.0%
!	TCAAGCAAGCTTTTCATTGG+AGG	-	chr3.1:65560959-65560978	MS.gene79881:CDS	40.0%
!!	TGTTGATGACCAGTCTCTTA+AGG	-	chr3.1:65561075-65561094	MS.gene79881:intron	40.0%
	ACTGGAAGATCAAGGGGATT+TGG	-	chr3.1:65561538-65561557	MS.gene79881:intron	45.0%
	AGAGACACTGGAAGATCAAG+GGG	-	chr3.1:65561532-65561551	MS.gene79881:intron	45.0%
	ATTGGAAACCTCTTGAGGCA+AGG	-	chr3.1:65560875-65560894	MS.gene79881:intron	45.0%
	TGAAGTTGCAGACTCTTCAC+TGG	+	chr3.1:65561578-65561597	None:intergenic	45.0%
	AACCTACGGAGAAGTGGTTG+AGG	-	chr3.1:65561108-65561127	MS.gene79881:intron	50.0%
	ACCTACGGAGAAGTGGTTGA+GGG	-	chr3.1:65561109-65561128	MS.gene79881:intron	50.0%
	ACTTCAGCACTCTCCATGGA+TGG	-	chr3.1:65561592-65561611	MS.gene79881:CDS	50.0%
	GTGGCGCAAGTAGTTAAGCA+TGG	+	chr3.1:65560933-65560952	None:intergenic	50.0%
	TGCAACTTCAGCACTCTCCA+TGG	-	chr3.1:65561588-65561607	MS.gene79881:CDS	50.0%
	ACCCTCAACCACTTCTCCGT+AGG	+	chr3.1:65561113-65561132	None:intergenic	55.0%
	AGCACTCTCCATGGATGGAC+AGG	-	chr3.1:65561597-65561616	MS.gene79881:CDS	55.0%
	GAGTAGCACCTTGCCTCAAG+AGG	+	chr3.1:65560886-65560905	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	65560857	65561681	65560857	ID=MS.gene79881
chr3.1	mRNA	65560857	65561681	65560857	ID=MS.gene79881.t1;Parent=MS.gene79881
chr3.1	exon	65561558	65561681	65561558	ID=MS.gene79881.t1.exon1;Parent=MS.gene79881.t1
chr3.1	CDS	65561558	65561681	65561558	ID=cds.MS.gene79881.t1;Parent=MS.gene79881.t1
chr3.1	exon	65561408	65561476	65561408	ID=MS.gene79881.t1.exon2;Parent=MS.gene79881.t1
chr3.1	CDS	65561408	65561476	65561408	ID=cds.MS.gene79881.t1;Parent=MS.gene79881.t1
chr3.1	exon	65560920	65561023	65560920	ID=MS.gene79881.t1.exon3;Parent=MS.gene79881.t1
chr3.1	CDS	65560920	65561023	65560920	ID=cds.MS.gene79881.t1;Parent=MS.gene79881.t1
chr3.1	exon	65560857	65560868	65560857	ID=MS.gene79881.t1.exon4;Parent=MS.gene79881.t1
chr3.1	CDS	65560857	65560868	65560857	ID=cds.MS.gene79881.t1;Parent=MS.gene79881.t1

Gene Sequence

>MS.gene79881

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACTCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGTATTGATTTGGTTTTATCTAGTTTTTTTATGCTGGTTAGTATTATTATTATGGCTCTAATAAAATGTATGGTTATCATAGGCCTTTCTTACCATGTTGATGACCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGGTGAGTTCATCTTAATTTATTGTTAAGTGAATAAATTTAGCTTCATTTTGCAATGTGTTTATCCCCTTTTGTATCAACATAACACTGCATTGACATTGGAATGTTAGAAGTTAAATTTGGGTAATTTGTATTGAATGCTGAAGAACACATTTCAGTGGGGAATATGTTTTGTCTTTGAATTTTGAGTAGACATGCTATTTACAATCTTAGCAAGCAAACATGATATCTGTAACTTGTTGTAATTCTGAAGAGTAAGTCAAATTTCCGGTAGTTGATACATTAAAGTGTCTTTGGTTTATGATTATTGAAACAAAAAAAAAAAAGCATCTGCTTTGTTTGATTATGGCGTTTTTATAATAAATAACTTTGGCTGTGTTTTTGCAGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCTGCAACTTCAGCACTCTCCATGGATGGACAGGTTGTAATATTATGCTGTTAAATGTTGATTGTATTCTAATTGTCATTTTAGTCGGTTGTCTGA

Protein sequence

>MS.gene79881.t1

MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTSEESATSALSMDGQSVV